|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
50-238 |
5.95e-22 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 95.11 E-value: 5.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 50 VIYALNTRQDEAQAGVEALREAHQEELQSVVAETKARLLQEQGHPkDDEEALFRRIQALESALELQKKLTQEALAESATC 129
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKI-GEELDLKRRIQTLEESLEQHERMKRQALTEFEQY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 130 RLETKERELRVEAEHAERVLTLSKEMLELKADYEKRLRHLAnhegppwgrLSQERPEAKAESGQVPGMQEVLLEVERLRA 209
Cdd:pfam15665 80 KRRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFE---------QLQAQFEQEKRKALEELRAKHRQEIQELLT 150
|
170 180
....*....|....*....|....*....
gi 512970280 210 ENQQLSQDYAHKAEELQATYERENEAIRQ 238
Cdd:pfam15665 151 TQRAQSASSLAEQEKLEELHKAELESLRK 179
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
598-889 |
7.41e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 7.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRALEqRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKA 677
Cdd:COG1196 235 RELEAELEELEAELEELEAELE-ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 678 QELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEMLR 757
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 758 SAGRMQATVLYPGDSEDREvpsedcggpgaaepgAGEGCGLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGH 837
Cdd:COG1196 394 AAAELAAQLEELEEAEEAL---------------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 512970280 838 QAQRAREVETLRQEHQKEmqAVVADFSGAQARLQARLAALEAELKDSGEKPG 889
Cdd:COG1196 459 EALLELLAELLEEAALLE--AALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
601-917 |
1.00e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQ----EAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAK 676
Cdd:COG1196 208 QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEaeleELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 677 AQELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEML 756
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 757 RSAGRMQATVLypgDSEDREvpsedcggpgaaepgagegcgLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEg 836
Cdd:COG1196 368 LEAEAELAEAE---EELEEL---------------------AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 837 hQAQRAREVETLRQEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGEKPGKAASRPEDLQLLGRLQSRLKEREEIIK 916
Cdd:COG1196 423 -LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
.
gi 512970280 917 Q 917
Cdd:COG1196 502 D 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
81-883 |
1.75e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.56 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 81 AETKARLLQEQGH---PKDDEEALFRRIQALESALELQKKLTQEALAESATCRLETKERELRVEAEHAERVLTLSKEMLE 157
Cdd:PTZ00121 1060 AEAKAHVGQDEGLkpsYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 158 LKADYEKRLRHLANHEgppWGRLSQE--RPEAKAESGQVPGMQEVLLEVERLRAENQQLSQDYAHKAEELQATYERENEA 235
Cdd:PTZ00121 1140 RKAEEARKAEDAKRVE---IARKAEDarKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE 1216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 236 IRQAMQQSVSEALWQWQEKESDLRKNFQVQESALQAQVRKLE-GDLEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQE 314
Cdd:PTZ00121 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEeARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 315 NSELKSTAKKLGEKLAVAK--DRLMLQECHVTQKADDMKTENDVLGEASDLEAHSLHPQQDQSlpkECPSMKGGTDIQSK 392
Cdd:PTZ00121 1297 KAEEKKKADEAKKKAEEAKkaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA---EAAEEKAEAAEKKK 1373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 393 KEANVETECMKQQYEEdlheIRRQTEEEKKHLQDQllKRLEDLVKKHTVEIKSVRCSVEAERKKLQKEVEAQVEEVKKKS 472
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEE----KKKADEAKKKAEEDK--KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 473 EKEiRQLEEEKSALNVQLQSswlEVLRLEEFIQQHKVSPQRAEERPQELDsqpcsilESQDPCSKLEEPSRTLPREDRQH 552
Cdd:PTZ00121 1448 EAK-KKAEEAKKAEEAKKKA---EEAKKADEAKKKAEEAKKADEAKKKAE-------EAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 553 KlaAEEGPSSDEEERTEvpleEEHDLQPPLSSSLKEKTPDTQCPPEdwqSQKAQLQAQVSQLQRALEQRANAHRAdlREL 632
Cdd:PTZ00121 1517 K--AEEAKKADEAKKAE----EAKKADEAKKAEEKKKADELKKAEE---LKKAEEKKKAEEAKKAEEDKNMALRK--AEE 1585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 633 RQQAEQEAEQLRRELQDGLQQSQAAraQLEAAHQRALRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALEEK 712
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 713 ARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEMLRSAgrmqatvlypgDSEDREVPSEdcggpgaaepga 792
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK-----------EAEEKKKAEE------------ 1720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 793 gegcgLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRllEEGHQAQRAREVETLRQEHQKEMQAVVADfsGAQARLQA 872
Cdd:PTZ00121 1721 -----LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE--EKKKIAHLKKEEEKKAEEIRKEKEAVIEE--ELDEEDEK 1791
|
810
....*....|.
gi 512970280 873 RLAALEAELKD 883
Cdd:PTZ00121 1792 RRMEVDKKIKD 1802
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-741 |
1.86e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 136 RELRVEAEHAERVLTLSKEMLELKAdyEKRLRHLAnhegppwgRLSQERPEAKAEsgqvpgMQEVLLEVERLRAENQQLS 215
Cdd:COG1196 203 EPLERQAEKAERYRELKEELKELEA--ELLLLKLR--------ELEAELEELEAE------LEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 216 QdyahKAEELQATYERENEAIRQAmqqsvsealwqwqekesdlrknfQVQESALQAQVRKLEGDLEHRGRKISDLKKYGQ 295
Cdd:COG1196 267 A----ELEELRLELEELELELEEA-----------------------QAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 296 KLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLMLQEchvTQKADDMKTENDVLGEASDLEAHSLHPQQDQS 375
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 376 LPKecpsmKGGTDIQSKKEANVETECMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEIKSVRCSVEAERK 455
Cdd:COG1196 397 ELA-----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 456 KLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSSWLEVLRLEEF--IQQHKVSPQRAEERPQELDSQPCSILESQD 533
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrgLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 534 PCSKLEEPSRTLPREDRQHKLAAEEGPSSDEEERTEVPLEEEHDLQPPLSSSLKEKTPDtqcppEDWQSQKAQLQAQVSQ 613
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE-----ADARYYVLGDTLLGRT 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 614 LQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTH 693
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 512970280 694 SLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSE 741
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
113-918 |
3.77e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 3.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 113 ELQKKL--TQEALA--ESATCRLETKERELRVEAEHAERVLTLSKEMLELKA--------DYEKRLRHLANHEGppwgRL 180
Cdd:TIGR02168 176 ETERKLerTRENLDrlEDILNELERQLKSLERQAEKAERYKELKAELRELELallvlrleELREELEELQEELK----EA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 181 SQERPEAKAEsgqvpgMQEVLLEVERLRAENQQLSQDYAHKAEELQATY------ERENEAIRQAMQQSVSEALWQWQEK 254
Cdd:TIGR02168 252 EEELEELTAE------LQELEEKLEELRLEVSELEEEIEELQKELYALAneisrlEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 255 ESDLRKNFQVQES--ALQAQVRKLEGDLEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVA 332
Cdd:TIGR02168 326 EELESKLDELAEElaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 333 KDRLMLQECHVTQKADDMKTENDVLGEASDLEAHSLHPQQDQSLpkecpsmkggTDIQSKKEANVETECMKQQYEEDLHE 412
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL----------EELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 413 IRRQTEEEKKHLQdQLLKRLEDLVKKHTVEIKSVRcSVEAERKKL---------QKEVEAQVEEVKKKSEKEIRQ----- 478
Cdd:TIGR02168 476 ALDAAERELAQLQ-ARLDSLERLQENLEGFSEGVK-ALLKNQSGLsgilgvlseLISVDEGYEAAIEAALGGRLQavvve 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 479 -LEEEKSALNVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDS--QPCSILESQDP-CSKLEEP--SRTLPREDRQH 552
Cdd:TIGR02168 554 nLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGflGVAKDLVKFDPkLRKALSYllGGVLVVDDLDN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 553 klAAEEGPSSDEEERTeVPLEEE----HDLQPPLSSSLKEKTPDTQCPPEDWQSQKAQLQAQVSQLQRALeqranahrAD 628
Cdd:TIGR02168 634 --ALELAKKLRPGYRI-VTLDGDlvrpGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL--------AE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 629 LRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKA-------KAQELKATEEHLKKESTHSLQIQHQA 701
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaqlskelTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 702 HRLELQALEEKARQELQEERERMQAQQARlLESLKQELSEQRAACSEHQKDLEMLRSAGRMQAtvlypgdsEDREVPSED 781
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERLESLERRIAATERRLEDLE--------EQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 782 cggpgaAEPGAGEGCGLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQA--QRAREVETLRQEHQKEMQAV 859
Cdd:TIGR02168 854 ------IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREleSKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 512970280 860 VADFSGAQARLQARLAALEAELKDSGEKPGKAASRPEDLQLlgRLQSRLKEREEIIKQL 918
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE--EARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-918 |
4.32e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 4.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 260 KNFQVQESALQAQVRKLEgdLEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRlmlq 339
Cdd:COG1196 216 RELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE---- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 340 echvtqkaddmktENDVLGEASDLEAhslhpqqdqslpkecpsmkggtDIQSKKEanvetecMKQQYEEDLHEIRRQTEE 419
Cdd:COG1196 290 -------------EYELLAELARLEQ----------------------DIARLEE-------RRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 420 EKKHLQDQLLKRLEDLVKKHTVEIKsvrcsvEAERKKLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSSWLEVLR 499
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEE------LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 500 LEEFIQQHKVSPQRAEERPQELDSQpcsilesqdpcskLEEPSRTLPREDRQHKLAAeegpssdEEERTEVPLEEEHDLQ 579
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEEL-------------EEALAELEEEEEEEEEALE-------EAAEEEAELEEEEEAL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 580 PPLSSSLKEKTPDTQcppEDWQSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARA 659
Cdd:COG1196 462 LELLAELLEEAALLE---AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 660 QLEAAHQRALRALEKAKAQELKATEEHLKkesthslqiQHQAHRLELQALEE-KARQELQEERERMQAQQARLLESLKQE 738
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLK---------AAKAGRATFLPLDKiRARAALAAALARGAIGAAVDLVASDLR 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 739 LSEQRAACSEHQKDLEMLRSAGRMQATVLYPGDSEDREVPSEDcgGPGAAEPGAGEGCGLREENAQLRDAVVRLRAEAEQ 818
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 819 HQQEARQLREQRRLLEEGHQAQRAREVETLRQEHQKEMQavvadfsgAQARLQARLAALEAELKDSGEKPGKAASRPEDL 898
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL--------EEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
650 660
....*....|....*....|
gi 512970280 899 QLLGRLQSRLKEREEIIKQL 918
Cdd:COG1196 760 PDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
621-923 |
6.35e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 6.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 621 RANAHRAD--LRELRQQAEQ---EAEQLRR--ELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTH 693
Cdd:COG1196 185 EENLERLEdiLGELERQLEPlerQAEKAERyrELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 694 sLQIQHQAHRLELQALEEKArQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEMLRSAGRMQAtvlypGDSE 773
Cdd:COG1196 265 -LEAELEELRLELEELELEL-EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE-----ELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 774 DREvpsedcggpgaaepgagegcglREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRAREVETLRQEHQ 853
Cdd:COG1196 338 ELE----------------------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512970280 854 KEMQAVVADFSGAQARLQARLAALEAELKDSGEKPGKAASRPEDLQL-LGRLQSRLKEREEIIKQLTEERR 923
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEaLEEAAEEEAELEEEEEALLELLA 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
201-744 |
1.56e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 201 LLEVERLRAENQQLSQDYAH---KAEELQATYERENEAIRQAMQQsvsealwqwQEKESDLRKNFQVQESALQAQVRKLE 277
Cdd:COG1196 231 LLKLRELEAELEELEAELEEleaELEELEAELAELEAELEELRLE---------LEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 278 GDLEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLMLQEchvTQKADDMKTENDVL 357
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 358 GEASDLEAHSLHPQQDQSLPKecpsmKGGTDIQSKKEANVETECMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVK 437
Cdd:COG1196 379 EELEELAEELLEALRAAAELA-----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 438 KHTVEIKSVRCSVEAERKKLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSSWLEVLRLEEF---------IQQHK 508
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 509 VSPQRAEE-----------RPQELDSQPCSILESQDPCSKLEEPSRTLPREDRQHKLAAEEGPSSDEEERTEVPLEEEHD 577
Cdd:COG1196 534 AAYEAALEaalaaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 578 LQPPLSSSLKEKTPDTQCPPEDWQSQKAQLQ---------AQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQ 648
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGrlrevtlegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 649 DGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQA---LEEKARQELQEERERMQ 725
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALeelPEPPDLEELERELERLE 773
|
570 580 590
....*....|....*....|....*....|..
gi 512970280 726 AQQARL----------LESLK---QELSEQRA 744
Cdd:COG1196 774 REIEALgpvnllaieeYEELEeryDFLSEQRE 805
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
291-883 |
3.17e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 3.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 291 KKYgQKLKEKIQDLDVQL-----REARQENSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTENDVLGEASDLEA 365
Cdd:COG1196 213 ERY-RELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 366 hslhpqqdqslpkecpsMKGGTDIQSKKEANVETEcMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEIKs 445
Cdd:COG1196 292 -----------------ELLAELARLEQDIARLEE-RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 446 vrcsvEAERKKLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQp 525
Cdd:COG1196 353 -----LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL- 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 526 csilesqdpcskLEEPSRTLPREDRQHKLAAEEgpssdeeERTEVPLEEEHDLQPPLSSSLKEKTPDTQcppEDWQSQKA 605
Cdd:COG1196 427 ------------EEALAELEEEEEEEEEALEEA-------AEEEAELEEEEEALLELLAELLEEAALLE---AALAELLE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 606 QLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEE 685
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 686 HLKkesthslqiQHQAHRLELQALEE-KARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEMLRSAGRMQA 764
Cdd:COG1196 565 YLK---------AAKAGRATFLPLDKiRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 765 TVLYPGDSEDREVPSEDcgGPGAAEPGAGEGCGLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRARE 844
Cdd:COG1196 636 LRRAVTLAGRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 512970280 845 VETLRQEHQKEMQAVVADFSGAQARLQ-------------------ARLAALEAELKD 883
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEElleeeelleeealeelpepPDLEELERELER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
391-923 |
2.73e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 391 SKKEANVETECM---KQQYEEDLHEIRRQTEEEKKhlQDQLLKRLEDLVKKHTV-EIKSVRCSVEAERKKLQKEVEAQVE 466
Cdd:PTZ00121 1082 DAKEDNRADEATeeaFGKAEEAKKTETGKAEEARK--AEEAKKKAEDARKAEEArKAEDARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 467 EVKKKSEKEIRQLEEEKSAlnvQLQSSWLEVLRLEEFIQQHKVspQRAEERPQELDSQPCSILESQDPCSKLEEPSRT-- 544
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKA---EAARKAEEVRKAEELRKAEDA--RKAEAARKAEEERKAEEARKAEDAKKAEAVKKAee 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 545 LPREDRQHKLAAEEGPSSDEEERTEVPLEEEHDLQPPLSSSLKEKTPDTQCPPEDWQSQKAQLQAQVSQLQRALEQRANA 624
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 625 HRAD-LRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTH---------- 693
Cdd:PTZ00121 1315 KKADeAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkaeekkkad 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 694 -----SLQIQHQAHRLELQALEEKARQELQEERE--------RMQAQQARLLESLKQELSEQRAA------CSEHQKDLE 754
Cdd:PTZ00121 1395 eakkkAEEDKKKADELKKAAAAKKKADEAKKKAEekkkadeaKKKAEEAKKADEAKKKAEEAKKAeeakkkAEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 755 MLRSAGRMQATVLYPGDSEDREVPSEDCGGPGAAEPGAGEGCGLREENA--------------------QLRDAVVRLRA 814
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKadeakkaeeakkadeakkaeEKKKADELKKA 1554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 815 EAEQHQQEARQLREQRRLLEEGHQAQR----AREVETLRQEHQKEMQAVVADFSGAQARL--QARLAALEAELKDSGEKP 888
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRkaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKaeEAKIKAEELKKAEEEKKK 1634
|
570 580 590
....*....|....*....|....*....|....*
gi 512970280 889 GKAASRPEDLQLLGRLQSRLKEREEIIKQLTEERR 923
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
601-922 |
9.37e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 9.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQ----LQAQVSQLQRALE-QRANAHRADLRELRQQAEqEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALE-- 673
Cdd:TIGR02168 208 QAEKAErykeLKAELRELELALLvLRLEELREELEELQEELK-EAEEELEELTAELQELEEKLEELRLEVSELEEEIEel 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 674 -------KAKAQELKATEEHLKkESTHSLQIQHQAHRLELQALEEKaRQELQEERERMQAQqarlLESLKQELSEQRAAC 746
Cdd:TIGR02168 287 qkelyalANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESK-LDELAEELAELEEK----LEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 747 SEHQKDLEMLRSAGRMQATVLypgDSEDREVPSedcggpgaaepgagegcgLREENAQLRDAVVRLRAEAEQHQQEARQL 826
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQL---ETLRSKVAQ------------------LELQIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 827 REQRRLLEEGHQAQRAREVETLRQEHQKEMQavvadfsGAQARLQARLAALEAELKDSGEKPGKAASRPEDLQ------- 899
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELE-------ELQEELERLEEALEELREELEEAEQALDAAERELAqlqarld 492
|
330 340
....*....|....*....|...
gi 512970280 900 LLGRLQSRLKEREEIIKQLTEER 922
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQ 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-853 |
1.07e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRALEQRAnahRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEkaka 677
Cdd:COG4913 272 AELEYLRAALRLWFAQRRLELLEAE---LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE---- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 678 QELKATEEHLKKESTHSLQIQHQAHRLELQA-LEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEML 756
Cdd:COG4913 345 REIERLERELEERERRRARLEALLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 757 RS--AGRMQATVLYPGDSED-REVPSEDCGGPGAAEPGAGEGCGLREENAQLRDAVVRLraeaeqhqqearqLREQRR-- 831
Cdd:COG4913 425 EAeiASLERRKSNIPARLLAlRDALAEALGLDEAELPFVGELIEVRPEEERWRGAIERV-------------LGGFALtl 491
|
250 260
....*....|....*....|..
gi 512970280 832 LLEEGHQAQRAREVETLRQEHQ 853
Cdd:COG4913 492 LVPPEHYAAALRWVNRLHLRGR 513
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
75-737 |
1.72e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 75 ELQSVVAEtKARLLQEQGHPKDDEEALfRRIQALESALELQKKLTQEALAESATCRLETKERELRVEAEHAERvLTLSKE 154
Cdd:COG1196 206 ERQAEKAE-RYRELKEELKELEAELLL-LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-EELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 155 MLELKADYEKRLRHLANHEGppwgRLSQERPEAKAESGQvpgMQEVLLEVERLRAENQQLSQDYAHKAEELQatyerENE 234
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQ----DIARLEERRRELEER---LEELEEELAELEEELEELEEELEELEEELE-----EAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 235 AIRQAMQQSVSEALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKisdlkkygQKLKEKIQDLDVQLREARQE 314
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL--------EELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 315 NSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTENDVLGEASDLEAHSLHPQQDQSLPKEcpsmkggtDIQSKKE 394
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA--------EAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 395 ANVEtecMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEIKSVRCSVEAERKKLQKEVEAQVEEVKKKSEK 474
Cdd:COG1196 495 LLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 475 EIRQLEEEKSALNVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQPCSILESQDPCSKLEEPSRTLPREDRQHKL 554
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 555 AAEEGPSSDEEERTEVPLEEEHDLQPPLSSSLKEktpdtqcppedwQSQKAQLQAQVSQLQRALEQRANAHRADLRELRQ 634
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELA------------ERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 635 QAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKEsthslqIQhqahRLE---LQALEE 711
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE------IE----ALGpvnLLAIEE 789
|
650 660
....*....|....*....|....*.
gi 512970280 712 kaRQELQEERERMQAQQARLLESLKQ 737
Cdd:COG1196 790 --YEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
43-755 |
1.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 43 KIAQLTKVIYALNTRQDEAQAGVEALREAhQEELQSVVAETKARLLQEQGHPKDDEEAL---FRRIQALESALELQKKLT 119
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLeelESKLDELAEELAELEEKL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 120 QEALAESATCRLETKERElRVEAEHAERVLTLSKEMLELKADYEKRLRHLANHegppwgRLSQERPEAKAESGQVpgmqe 199
Cdd:TIGR02168 347 EELKEELESLEAELEELE-AELEELESRLEELEEQLETLRSKVAQLELQIASL------NNEIERLEARLERLED----- 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 200 vllEVERLRAENQQLSQDYA-HKAEELQATYERENEAIRQAmqqsvSEALWQWQEKESDLRKNFQVQESALQAqvrkLEG 278
Cdd:TIGR02168 415 ---RRERLQQEIEELLKKLEeAELKELQAELEELEEELEEL-----QEELERLEEALEELREELEEAEQALDA----AER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 279 DLEHRGRKISDLkkygQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKD---------RLMLQECHVTQKADD 349
Cdd:TIGR02168 483 ELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalGGRLQAVVVENLNAA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 350 MKT----ENDVLGEASDLEAHSLHPQQDQSLPKECPSMKGGTD------IQSKKEANVETECMKQQYE--EDLHEIRRQT 417
Cdd:TIGR02168 559 KKAiaflKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgvakdlVKFDPKLRKALSYLLGGVLvvDDLDNALELA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 418 EEEKKH-----LQDQLLKRlEDLVKKHTVEIKSVRCSVEAERKKLQKEVEAQVEEVKKKS------EKEIRQLEEEKSAL 486
Cdd:TIGR02168 639 KKLRPGyrivtLDGDLVRP-GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEkalaelRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 487 NVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQpcsilesqdpcskleepsrtlpREDRQHKLAAEEGPSSDEEE 566
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE----------------------LTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 567 RTEVPLEEEHDLQPPLssslkektpdtqcppEDWQSQKAQLQAQVSQLQRALeQRANAHRADLRELRQQAEQEAEQLRRE 646
Cdd:TIGR02168 776 ELAEAEAEIEELEAQI---------------EQLKEELKALREALDELRAEL-TLLNEEAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 647 LQDGLQQSQAARAQLEAAhQRALRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALE----EKARQELQEERE 722
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESL-AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEElrelESKRSELRRELE 918
|
730 740 750
....*....|....*....|....*....|....*.
gi 512970280 723 RMQAQQARL---LESLKQELSEQRAACSEHQKDLEM 755
Cdd:TIGR02168 919 ELREKLAQLelrLEGLEVRIDNLQERLSEEYSLTLE 954
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-462 |
3.62e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 34 AEMHVKMCKKIAQLTKVIYALNTRQDEAQAGVEALREAHQEELQSVVAETKARLLQEQGHPKDDEEALFRRIQALESALE 113
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 114 LQKKLTQEALAESATCRLETKER--ELRVEAEHAERVLTLSKEMLELKADYEKRLRHLANHEGPPWGRLSQERPEA-KAE 190
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKadEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdEAK 1528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 191 SGQVPGMQEVLLEVERLRAENQQLSQDYAHKAEELQATYERENEAIRQAMQQSVSEALWQWQEKESDLRKNFQVQESALQ 270
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 271 AQVRKLEgdlEHRGRKISDLKKyGQKLKEKIQDLDVQLREARQENSELkstaKKLGEKLAVAKDRLMLQECHVTQKADDM 350
Cdd:PTZ00121 1609 AEEAKKA---EEAKIKAEELKK-AEEEKKKVEQLKKKEAEEKKKAEEL----KKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 351 -KTENDVLGEASDLEAHSLHPQQDQSLPK-ECPSMKGGTDIQSKKEAN-VETECMKQQYEED---LHEIRRQTEEEKK-- 422
Cdd:PTZ00121 1681 kKAEEDEKKAAEALKKEAEEAKKAEELKKkEAEEKKKAEELKKAEEENkIKAEEAKKEAEEDkkkAEEAKKDEEEKKKia 1760
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 512970280 423 HLQDQLLKRLEDLVKKHTVEIKSvrcSVEAERKKLQKEVE 462
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEE---ELDEEDEKRRMEVD 1797
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
412-923 |
1.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 412 EIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEIKSVRCSVEAERKKLQKEV---EAQVEEVKKKSEKEIRQLEEEKSALNV 488
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkkaEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 489 QLQSSWLEVlRLEEFIQQHKVSPQRAEERPQELDSQPCSILESQDPCSKLEEPSRTLPREDRQHKLAAEEGPSSDEEERT 568
Cdd:PTZ00121 1314 AKKADEAKK-KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 569 EVPLEEEHDLQPPLSSSLKEKTPDTQCPPEdwQSQKAQLQAQVSQLQRALEQRANAHradlrELRQQAEQ--EAEQLRRE 646
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKAD-----EAKKKAEEakKAEEAKKK 1465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 647 LQDGLQQSQAARaqleaahqralRALEKAKAQELKATEEHLKKesthslqiqhQAHRLELQALEEKARQELQEERERMQA 726
Cdd:PTZ00121 1466 AEEAKKADEAKK-----------KAEEAKKADEAKKKAEEAKK----------KADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 727 QQARLLESLKQELSEQRAacsEHQKDLEMLRSAGRMQATVLYPGDSEDREVPSEDCGGPGAAEPGAgegcglREENAQLR 806
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKA---EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK------KAEEARIE 1595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 807 DAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRAREVETLRQEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGE 886
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 512970280 887 KPGKAASRPED----LQLLGRLQSRLKEREEIIKQLTEERR 923
Cdd:PTZ00121 1676 KAEEAKKAEEDekkaAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
644-883 |
2.79e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 2.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 644 RRELQDGLQQSQAARAQLEAAHQRALRALEKAKA-QELKATEEHLKKESTHSLQIQHQAHRLELQALEEKaRQELQEERE 722
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELlEPIRELAERYAAARERLAELEYLRAALRLWFAQRR-LELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 723 RMQAQQARLleslKQELSEQRAACSEHQKDLEMLRSAgRMQAtvlyPGDSEDRevpsedcggpgaaepgagegcgLREEN 802
Cdd:COG4913 299 ELRAELARL----EAELERLEARLDALREELDELEAQ-IRGN----GGDRLEQ----------------------LEREI 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 803 AQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRAREVETLRQ--EHQKEMQAVVADFSGAQARLQARLAALEAE 880
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEAleEELEALEEALAEAEAALRDLRRELRELEAE 427
|
...
gi 512970280 881 LKD 883
Cdd:COG4913 428 IAS 430
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
35-758 |
3.25e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 35 EMHVKMCKKIAQLTKVIYALNTRQDEAQAGVEALrEAHQEELQSVVAETKARLLQEQGHPKDDEEALFRRIQALESALEL 114
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL-EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 115 QKKLTQEALAESATCRLETKERELRVeAEHAERVLTLSKEMLELKADYEKRLRHLAnhegppwgRLSQERPEAKAESGQV 194
Cdd:TIGR00618 270 EELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRA--------KLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 195 PGMQEVLLEVERLRAENQQLSQDYAHKAEELQATYERENEAIRQAMQQSVSEALWQWQEKESDLRKNFQVQESALQAQVR 274
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 275 KLEGDLEHRGRKISDLKKYGQKLKEKIQDldvQLREARQENSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTEN 354
Cdd:TIGR00618 421 DLQGQLAHAKKQQELQQRYAELCAAAITC---TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 355 DVLGEASDLEAHSLHP----QQDQSLPKECPSMKGGTDIQSKKEANVETecmkqqYEEDLHEIRRQTEEEKKHLQdqllk 430
Cdd:TIGR00618 498 ELQEEPCPLCGSCIHPnparQDIDNPGPLTRRMQRGEQTYAQLETSEED------VYHQLTSERKQRASLKEQMQ----- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 431 RLEDLVKKHTVEIKSVRCSVEAERK---KLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSswLEVLRLEEFIQQH 507
Cdd:TIGR00618 567 EIQQSFSILTQCDNRSKEDIPNLQNitvRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR--LHLQQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 508 KVSPQRAEERPQELDSQPCSILESQDPCSKLEEPSRTLPREdrQHKLAAEEGPSSDEEERTEVPLEEEhdlqpplsSSLK 587
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKM--QSEKEQLTYWKEMLAQCQTLLRELE--------THIE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 588 EKTPDTQCPPEDWQSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQR 667
Cdd:TIGR00618 715 EYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLR 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 668 AlralekAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQ--ELQEERERMQAQQARLLESLKQ--ELSEQR 743
Cdd:TIGR00618 795 E------EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRleEKSATLGEITHQLLKYEECSKQlaQLTQEQ 868
|
730
....*....|....*
gi 512970280 744 AACSEHQKDLEMLRS 758
Cdd:TIGR00618 869 AKIIQLSDKLNGINQ 883
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
634-892 |
3.28e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 634 QQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQeLKATEEHLKKesthsLQIQHQAHRLELQALEEKa 713
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-IAALARRIRA-----LEQELAALEAELAELEKE- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 714 RQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKD-LEMLRSAGRMQAtvLYPGDSEDREvpsedcggpgaaepga 792
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKY--LAPARREQAE---------------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 793 gegcGLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEgHQAQRAREVETLRQEhQKEMQAVVADFSGAQARLQA 872
Cdd:COG4942 154 ----ELRADLAELAALRAELEAERAELEALLAELEEERAALEA-LKAERQKLLARLEKE-LAELAAELAELQQEAEELEA 227
|
250 260
....*....|....*....|
gi 512970280 873 RLAALEAELKDSGEKPGKAA 892
Cdd:COG4942 228 LIARLEAEAAAAAERTPAAG 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
608-894 |
8.27e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 8.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 608 QAQVSQLQRALEQR------ANAHRADLRELRQQAEQEAEQLRRELQDgLQQS---QAARAqleAAHQRALRALEKAKAQ 678
Cdd:COG3096 353 QEDLEELTERLEEQeevveeAAEQLAEAEARLEAAEEEVDSLKSQLAD-YQQAldvQQTRA---IQYQQAVQALEKARAL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 679 elkateehlkkesthslqiqhqahrLELQALE-EKARQELQEERERMQAQQARLLEsLKQELSEQRAACSEHQKDLEMLR 757
Cdd:COG3096 429 -------------------------CGLPDLTpENAEDYLAAFRAKEQQATEEVLE-LEQKLSVADAARRQFEKAYELVC 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 758 S-AGrmqatvlypgdsedrEVPSEDcggpgAAEPGAGEGCGLREENAQLrDAVVRLRAE-AEQHQQEARQLREQRRLLEE 835
Cdd:COG3096 483 KiAG---------------EVERSQ-----AWQTARELLRRYRSQQALA-QRLQQLRAQlAELEQRLRQQQNAERLLEEF 541
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 512970280 836 GHQAQRAREVETLRQEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGEKPGKAASR 894
Cdd:COG3096 542 CQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
626-932 |
1.11e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 626 RADLRELRQQAE--QEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKesthsLQIQHQAHR 703
Cdd:TIGR02168 199 ERQLKSLERQAEkaERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE-----LEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 704 LELQALEEKArQELQEERERMQAQQARLlESLKQELSEQRAACSEHQKDLEMLRSAGRMQATvlypgdsEDREVPSEdcg 783
Cdd:TIGR02168 274 LEVSELEEEI-EELQKELYALANEISRL-EQQKQILRERLANLERQLEELEAQLEELESKLD-------ELAEELAE--- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 784 gpgaaepgagegcgLREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRAREVETLRQEhqkemqavvadf 863
Cdd:TIGR02168 342 --------------LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI------------ 395
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512970280 864 sgaqARLQARLAALEAELKDSGEKPGKAASRPEDLQL------LGRLQSRLKEREEIIKQLTEERRFHYAAFPSA 932
Cdd:TIGR02168 396 ----ASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaeLKELQAELEELEEELEELQEELERLEEALEEL 466
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
414-763 |
1.14e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 414 RRQTEEEKKHLQDQLLKRLEDLVKkhtvEIKSVRCSVEAERKKLQK--EVEAQVEEVKKK-SEKEIRQLEEEKSALNVQL 490
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILN----ELERQLKSLERQAEKAERykELKAELRELELAlLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 491 QSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQpcsILESQdpcSKLEEPSRTLPREDRQHKLAAEegpSSDEEERTEV 570
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEE---IEELQ---KELYALANEISRLEQQKQILRE---RLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 571 PLEEEHDLQPPLSSSLKEKTpdtqcppEDWQSQKAQLQAQVSQLQRALEqRANAHRADLRELRQQAEQEAEQLRRELQDG 650
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEEL-------AELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 651 LQQSQAARAQLEAAHQRaLRALEKAKAQELKATEEHLKKESTHSLQIQHQAhrlelQALEEKARQELQEERERMQAQQAR 730
Cdd:TIGR02168 392 ELQIASLNNEIERLEAR-LERLEDRRERLQQEIEELLKKLEEAELKELQAE-----LEELEEELEELQEELERLEEALEE 465
|
330 340 350
....*....|....*....|....*....|...
gi 512970280 731 LLESLKQELSEQRAACSEHQKDLEMLRSAGRMQ 763
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
564-923 |
3.33e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 564 EEERTEVPLEEEHDLQPPLSSsLKEKTPDTQCPPEDWQSQKAQLQAQVSQLQRALE---------QRANAHRADLRELRQ 634
Cdd:PRK02224 190 DQLKAQIEEKEEKDLHERLNG-LESELAELDEEIERYEEQREQARETRDEADEVLEeheerreelETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 635 QAEQEAEQLRRELQDglQQSQAARAQLEAAHQRALRALEKAKAQELkateehlkkesthslqiqhQAHRLELQALEEKAR 714
Cdd:PRK02224 269 ETEREREELAEEVRD--LRERLEELEEERDDLLAEAGLDDADAEAV-------------------EARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 715 QELQEERERMQA---QQARLLES---LKQELSEQRAACSEHQKDLEMLRSAGRMQATVLYPGDSEDREVPSEDCGGPGAA 788
Cdd:PRK02224 328 DRLEECRVAAQAhneEAESLREDaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 789 EPGAGEGCGLREENAQLRDAVVRLRAEAeqhQQEARQLREQRRLLEEGHQAQRAREVEtlrqehQKEMQAVVADFSGAQA 868
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATL---RTARERVEEAEALLEAGKCPECGQPVE------GSPHVETIEEDRERVE 478
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 512970280 869 RLQARLAALEAELKDSGEKpgkaASRPEDLQLLGRLQSRLKEREEIIKQLTEERR 923
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEER----LERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
601-754 |
3.52e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQrANAHRADLRELRQQAEQEAEQLRR------------ELQDGLQQSQAARAQLEAAHQ-- 666
Cdd:COG4913 609 RAKLAALEAELAELEEELAE-AEERLEALEAELDALQERREALQRlaeyswdeidvaSAEREIAELEAELERLDASSDdl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 667 RALRALEKAKAQELKATEEHLKKEST---------HSLQIQHQAHRLELQALEEKARQELQEERERM--QAQQARLLESL 735
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGeigrlekelEQAEEELDELQDRLEAAEDLARLELRALLEERfaAALGDAVEREL 767
|
170
....*....|....*....
gi 512970280 736 KQELSEQRAACSEHQKDLE 754
Cdd:COG4913 768 RENLEERIDALRARLNRAE 786
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
601-910 |
1.10e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.57 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQR------ANAHRADLRELRQQAEQEAEQLRRELQDgLQQS---QAARAqleAAHQRALRA 671
Cdd:PRK04863 347 QEKIERYQADLEELEERLEEQnevveeADEQQEENEARAEAAEEEVDELKSQLAD-YQQAldvQQTRA---IQYQQAVQA 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 672 LEKAKAQelkateehlkkesthslqiqhqahrLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQK 751
Cdd:PRK04863 423 LERAKQL-------------------------CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 752 DLEMLRSAgrmqatvlypGDSEDREVpsedcggpgaAEPGAGEGCGLREENAQLRDAVVRLRAEAEQHQQEARQLREQRR 831
Cdd:PRK04863 478 AYQLVRKI----------AGEVSRSE----------AWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 832 LLEEGHQAQRAR-EVETLRQEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGEKPGK-AASRPEDLQLLGRLqSRLK 909
Cdd:PRK04863 538 LLAEFCKRLGKNlDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRlAARAPAWLAAQDAL-ARLR 616
|
.
gi 512970280 910 E 910
Cdd:PRK04863 617 E 617
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
605-735 |
1.25e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRALEqRANAHRADLRELRQQAEQeaeqLRRELQDG---LQQSQAARAQLEAAHQRALRALEKAKAQELK 681
Cdd:COG4913 664 ASAEREIAELEAELE-RLDASSDDLAALEEQLEE----LEAELEELeeeLDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 512970280 682 ATEEhlkKESTHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESL 735
Cdd:COG4913 739 AEDL---ARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
550-923 |
1.35e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 550 RQHKLAAEEGPSSDEEERTEVP-LEEE-HDLQPPLSSSLKEKtpdtqcppEDWQSQKAQLQAQVSQLQRALEQRA----- 622
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELEtLEAEiEDLRETIAETERER--------EELAEEVRDLRERLEELEEERDDLLaeagl 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 623 -NAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTHSlqiQHQA 701
Cdd:PRK02224 305 dDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE---AVED 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 702 HRLELQALEEkarqELQEERERMQAQQARL------LESLKQELSEQRAACSEHQKDLEMLRSAGRMQATVLYPGDSEDR 775
Cdd:PRK02224 382 RREEIEELEE----EIEELRERFGDAPVDLgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEC 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 776 EVPSEDCGGPGAAEPGAGEGCGLREENAQLRDAVVRLRAEAEQHQQ------EARQLREQRRLLEEGHQAQRAR------ 843
Cdd:PRK02224 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlveaedRIERLEERREDLEELIAERRETieekre 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 844 EVETLRQEHQK-EMQAVVADFSGAQARLQA-----RLAALE---AELKDSGEKPGKAASRPEDLQLLGRLQSRLKEREEI 914
Cdd:PRK02224 538 RAEELRERAAElEAEAEEKREAAAEAEEEAeeareEVAELNsklAELKERIESLERIRTLLAAIADAEDEIERLREKREA 617
|
....*....
gi 512970280 915 IKQLTEERR 923
Cdd:PRK02224 618 LAELNDERR 626
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
798-920 |
2.33e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 47.45 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 798 LREENAQLRDAVVRLRAE----AEQHQQEARQLREQRRLLEEGHQAQRA--REVETLRQEHQKEMQAVVADFSGAQARLQ 871
Cdd:pfam09787 59 LREEIQKLRGQIQQLRTElqelEAQQQEEAESSREQLQELEEQLATERSarREAEAELERLQEELRYLEEELRRSKATLQ 138
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 512970280 872 ARLAALEAELKDSgekpgkaasrpeDLQLLGRLQSRLK--EREEIIKQLTE 920
Cdd:pfam09787 139 SRIKDREAEIEKL------------RNQLTSKSQSSSSqsELENRLHQLTE 177
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-781 |
2.44e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 512 QRAEERPQELDSQPCSILESQDPC-SKLEEPSRTLPREDRQHKLAAEEGPSSDEEERTEVplEEEHDLQPPLSSsLKEKT 590
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIeNRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK--ERLEELEEDLSS-LEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 591 PDTQCPPEDWQSQKAQLQAQVSQLQRALEQ-RANAHRADLRELRQQAEQEAEQLRR------ELQDGLQQSQAARAQLEA 663
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRiearlrEIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 664 AHQRALRALEKAKAQ--ELKATEEHLKKEsTHSLQIQHQAHRLELQALEEKaRQELQEERERMQAQqARLLESLKQELSE 741
Cdd:TIGR02169 834 EIQELQEQRIDLKEQikSIEKEIENLNGK-KEELEEELEELEAALRDLESR-LGDLKKERDELEAQ-LRELERKIEELEA 910
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 512970280 742 QRAACSEHQKDLEMLRSAGRMQATVLYPGDSEDREVPSED 781
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
598-743 |
3.22e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKA------QLQAQVSQLQRALEQRANAHRAdLRELRQQAEQE---AEQLRRELQDglQQSQAARAQLEAAHQRA 668
Cdd:PRK04863 503 RRLREQRHlaeqlqQLRMRLSELEQRLRQQQRAERL-LAEFCKRLGKNlddEDELEQLQEE--LEARLESLSESVSEARE 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 669 LRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALEEKA-RQELQE------ERERMQAQQARLLESLKQELSE 741
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEdSQDVTEymqqllERERELTVERDELAARKQALDE 659
|
..
gi 512970280 742 QR 743
Cdd:PRK04863 660 EI 661
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
798-923 |
4.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 798 LREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQRAREVETLRQEhQKEMQAVVADFSGAQARLQARLAAL 877
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLERE-IERLERELEERERRRARLEALLAAL 371
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 512970280 878 EAELKDS----GEKPGKAASRPEDL-QLLGRLQSRLKEREEIIKQLTEERR 923
Cdd:COG4913 372 GLPLPASaeefAALRAEAAALLEALeEELEALEEALAEAEAALRDLRRELR 422
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
601-745 |
5.29e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQR--------ANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAhQRALRAL 672
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGpdalpellQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAL-RAQLQQE 310
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512970280 673 EKAKAQELKATEEHLKKESThSLQIQHQAHRLELQALEEKARQ--ELQEERERMQAQQARLLESLkQELSEQRAA 745
Cdd:COG3206 311 AQRILASLEAELEALQAREA-SLQAQLAQLEARLAELPELEAElrRLEREVEVARELYESLLQRL-EEARLAEAL 383
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
601-721 |
5.61e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.50 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQrANAHRADLREL-------RQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQR--ALRA 671
Cdd:PRK09039 73 RQGNQDLQDSVANLRASLSA-AEAERSRLQALlaelagaGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQiaALRR 151
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 512970280 672 LEKAKAQELKATEehlKKESTHSLQIQHQAHRLELqALEEKArQELQEER 721
Cdd:PRK09039 152 QLAALEAALDASE---KRDRESQAKIADLGRRLNV-ALAQRV-QELNRYR 196
|
|
| DUF2968 |
pfam11180 |
Protein of unknown function (DUF2968); This family of proteins has no known function. |
603-675 |
8.79e-05 |
|
Protein of unknown function (DUF2968); This family of proteins has no known function.
Pssm-ID: 431707 [Multi-domain] Cd Length: 180 Bit Score: 44.29 E-value: 8.79e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512970280 603 QKAQLQAQVSQLQRAL---EQRANAHRADLRELRQQAEQEAE---QLRRELQDGLQQSQAARAQLEAAhQRALRALEKA 675
Cdd:pfam11180 100 RRAQLEAQKAQTERQIaasEARAARLQADLQVARQQEQQVASrqkQTRQEAAALEAQRQAAQAQLRAL-QRQIRQLQRQ 177
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
600-761 |
9.68e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 600 WQSQKAQLQAQVSQLQRALEQRA-------NAHRADLRELRQQAEQEAEQLRR---------ELQDGLQQSQAARAQLEA 663
Cdd:COG3096 862 LRQQLDQLKEQLQLLNKLLPQANlladetlADRLEELREELDAAQEAQAFIQQhgkalaqlePLVAVLQSDPEQFEQLQA 941
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 664 AHQRALRALEKAKAQ-----ELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQARllesLKQE 738
Cdd:COG3096 942 DYLQAKEQQRRLKQQifalsEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQ----YSQY 1017
|
170 180
....*....|....*....|...
gi 512970280 739 LSEQRAACSEHQKDLEMLRSAGR 761
Cdd:COG3096 1018 NQVLASLKSSRDAKQQTLQELEQ 1040
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
289-922 |
1.48e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 289 DLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTENDVLGEASDLEAHSL 368
Cdd:TIGR00618 209 CTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 369 HPQQDQSLPK-------ECPSMKGGTDIQSKKEANVETECMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTV 441
Cdd:TIGR00618 289 ARKAAPLAAHikavtqiEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIR 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 442 EIKSVRCSVEAERKKLQKEVEAqVEEVKKKSEKEIRQLEEEKSALNVQLQSswlevlrlEEFIQQHKVSPQRAEERPQEL 521
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT-LTQKLQSLCKELDILQREQATIDTRTSA--------FRDLQGQLAHAKKQQELQQRY 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 522 DSQPCSILESQDPCSKLEEPSRTLPRE---DRQHKLAAEEGPSSDEEERTEVP---LEEEHDLQPPLSSSLKEKTPDTQC 595
Cdd:TIGR00618 440 AELCAAAITCTAQCEKLEKIHLQESAQslkEREQQLQTKEQIHLQETRKKAVVlarLLELQEEPCPLCGSCIHPNPARQD 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 596 P--PEDWQSQKAQLQAQVSQLQRALEQrANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAhQRALRALE 673
Cdd:TIGR00618 520 IdnPGPLTRRMQRGEQTYAQLETSEED-VYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL-QNITVRLQ 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 674 KAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEErerMQAQQARLLESLKQELSEQRAACSEHQKDL 753
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALK---LTALHALQLTLTQERVREHALSIRVLPKEL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 754 EMLRSAGRMQATVLYPGDSEDREVPSEDCGGPGAAEPGAGEGCGLREENAQ-LRDAVVRLRAEAEQHQQEARQLREQRR- 831
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENaSSSLGSDLAAREDALNQSLKELMHQARt 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 832 -LLEEGHQAQRAREVETLRQEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGEKpgkaasRPEDLQLLGRLQSRLKE 910
Cdd:TIGR00618 755 vLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE------IPSDEDILNLQCETLVQ 828
|
650
....*....|..
gi 512970280 911 REEIIKQLTEER 922
Cdd:TIGR00618 829 EEEQFLSRLEEK 840
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
596-715 |
1.58e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 45.71 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 596 PPEDWQSQKAQLQAQVSQLQRALEQRANAhradlrelRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRalraLEKA 675
Cdd:PRK11448 136 PPEDPENLLHALQQEVLTLKQQLELQARE--------KAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ----LEQL 203
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 512970280 676 KAQELKATEEHLKKESTHSLQiqhQAHRLELQalEEKARQ 715
Cdd:PRK11448 204 QEKAAETSQERKQKRKEITDQ---AAKRLELS--EEETRI 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
798-921 |
1.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 798 LREENAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQ----RAREVETLRQEHQKEMQAVVADfSGAQARLQAR 873
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeiDVASAEREIAELEAELERLDAS-SDDLAALEEQ 693
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 512970280 874 LAALEAELKDSGEKPGKAASRpedlqlLGRLQSRLKEREEIIKQLTEE 921
Cdd:COG4913 694 LEELEAELEELEEELDELKGE------IGRLEKELEQAEEELDELQDR 735
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
598-918 |
1.88e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRAL---EQRANAHRADLRELRQQAEQEAEQLRrELQDGLQQSQAARAQLEA--AHQRALRAL 672
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELsdaSRKIGEIEKEIEQLEQEEEKLKERLE-ELEEDLSSLEQEIENVKSelKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 673 EKAKAQELKATEEHLKKESTHSL--QIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQ 750
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLSHSRipEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 751 KDlemlrsagrmqatvlypgdsedrevpsedcggpgaaepgagegcgLREENAQLRDAVVRLRAEAEQHQQEARQLREQR 830
Cdd:TIGR02169 850 KS---------------------------------------------IEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 831 RLLEEghqaQRAREVETLR--QEHQKEMQAVVADFSGAQARLQARLAALEAELKDSGEKPGKAASRPEDLQLLGRLQSRL 908
Cdd:TIGR02169 885 GDLKK----ERDELEAQLRelERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAEL 960
|
330
....*....|
gi 512970280 909 KEREEIIKQL 918
Cdd:TIGR02169 961 QRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
414-728 |
3.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 414 RRQTEEEKKHLQDQLLKRLEDLvkKHTVEIKSVRcSVEAERKKLQKEVEAqveevkkksekeirqLEEEKSALNVQLQSS 493
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREY--EGYELLKEKE-ALERQKEAIERQLAS---------------LEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 494 WLEVLRLEEFIQQhkvspqrAEERPQELDSQpcsilESQDPCSKLEEPSRTLPREDRQHKLAAEEGPSSDEEERTevpLE 573
Cdd:TIGR02169 264 EKRLEEIEQLLEE-------LNKKIKDLGEE-----EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK---LE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 574 EEHDLQPPLSSSLKEKTpdtqcppEDWQSQKAQLQAQVSQLQ---RALEQRANAHRADLRELRQ---QAEQEAEQLRRE- 646
Cdd:TIGR02169 329 AEIDKLLAEIEELEREI-------EEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDelkDYREKLEKLKREi 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 647 ---------LQDGLQQSQAARAQLEA------AHQRALRALEKAKAQELKATEEHLK--KESTHSLQIQHQAHRLELQAL 709
Cdd:TIGR02169 402 nelkreldrLQEELQRLSEELADLNAaiagieAKINELEEEKEDKALEIKKQEWKLEqlAADLSKYEQELYDLKEEYDRV 481
|
330
....*....|....*....
gi 512970280 710 EEKaRQELQEERERMQAQQ 728
Cdd:TIGR02169 482 EKE-LSKLQRELAEAEAQA 499
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
585-758 |
3.08e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 585 SLKEKTPDTQCPPEDWQSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEqlrrELQDGLQQSQAARAQLEAA 664
Cdd:pfam01576 303 ALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALE----ELTEQLEQAKRNKANLEKA 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 665 HQralrALEKakaqELKATEEHLKKESTHSLQIQHQAHRLELQALE--------EKARQELQEERERMQAQqarlLESLK 736
Cdd:pfam01576 379 KQ----ALES----ENAELQAELRTLQQAKQDSEHKRKKLEGQLQElqarlsesERQRAELAEKLSKLQSE----LESVS 446
|
170 180
....*....|....*....|..
gi 512970280 737 QELSEQRAACSEHQKDLEMLRS 758
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSLES 468
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
407-760 |
3.10e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 407 EEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEIKSVR---CSVEAERKKLQKEVEAQVEEVKKKSEKEIRQLEEEK 483
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTekaSSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 484 SALNvQLQSSWLEVLRLEEfiqqhkvspQRAEERPQELDSQPCSILESQDPCSKLEEPSRTLprEDRQHKLAAEEgpssd 563
Cdd:pfam15921 324 STVS-QLRSELREAKRMYE---------DKIEELEKQLVLANSELTEARTERDQFSQESGNL--DDQLQKLLADL----- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 564 EEERTEVPLEEEHDLQ------------PPLSSSLKEKTPDTQCPPEDWQSQKAQLQAQVSQlQRALEQRANAHRADLRE 631
Cdd:pfam15921 387 HKREKELSLEKEQNKRlwdrdtgnsitiDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER-QMAAIQGKNESLEKVSS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 632 LRQQAEQEAEQLRRELQD------GLQQSQAARAQLEAAHQRALRALEKAKAQ--------ELKATE-EHLKKESTHSLQ 696
Cdd:pfam15921 466 LTAQLESTKEMLRKVVEEltakkmTLESSERTVSDLTASLQEKERAIEATNAEitklrsrvDLKLQElQHLKNEGDHLRN 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 697 IQHQAHRLELQALE-------------------------------EKARQELQEERERMQAQQARLLESLKQ-ELSEQRA 744
Cdd:pfam15921 546 VQTECEALKLQMAEkdkvieilrqqienmtqlvgqhgrtagamqvEKAQLEKEINDRRLELQEFKILKDKKDaKIRELEA 625
|
410
....*....|....*.
gi 512970280 745 ACSEHQKDLEMLRSAG 760
Cdd:pfam15921 626 RVSDLELEKVKLVNAG 641
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
605-938 |
3.10e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRALEQRAnAHRADLRELRQQAEQ------------EAEQLRRELQDGLQQSQAARAQLEAAHQRALRAL 672
Cdd:PRK04863 789 EQLRAEREELAERYATLS-FDVQKLQRLHQAFSRfigshlavafeaDPEAELRQLNRRRVELERALADHESQEQQQRSQL 867
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 673 EKAKAQeLKATEEHLKkesthslqiqhQAHRLELQALEEKARqELQEERERMQ------AQQARLLESLKQELS------ 740
Cdd:PRK04863 868 EQAKEG-LSALNRLLP-----------RLNLLADETLADRVE-EIREQLDEAEeakrfvQQHGNALAQLEPIVSvlqsdp 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 741 EQRAACSEHQKDLEMLRSAGRMQATVLYPGDSEDREVPSEDCGGPGAAEPGAGEgcGLREENAQLRDAVVRLRAEAEQHQ 820
Cdd:PRK04863 935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNE--KLRQRLEQAEQERTRAREQLRQAQ 1012
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 821 QEARQLREQRRLLEEGHQAQRareveTLRQEHQKEMQA--VVADfSGAQARLQARLAALEAELKdsgekpgkaASRPEDL 898
Cdd:PRK04863 1013 AQLAQYNQVLASLKSSYDAKR-----QMLQELKQELQDlgVPAD-SGAEERARARRDELHARLS---------ANRSRRN 1077
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 512970280 899 QLLGRLQSRLKEREEIIKQLTEERRFHYAAFPSAVSHRNR 938
Cdd:PRK04863 1078 QLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
602-745 |
4.01e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 4.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 602 SQKAQLQAQ--VSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDgLQQSQaaraqleaahqralRALEKaKAQE 679
Cdd:PRK12704 55 KKEALLEAKeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL-LEKRE--------------EELEK-KEKE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512970280 680 LKATEEHLKKESThslqiqhqahrlELQALEEKARQELqEERERMQAQQAR--LLESLKQELSEQRAA 745
Cdd:PRK12704 119 LEQKQQELEKKEE------------ELEELIEEQLQEL-ERISGLTAEEAKeiLLEKVEEEARHEAAV 173
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
620-759 |
4.44e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 620 QRANAHRADLRELRQQAEQeAEQLRRELQDG---LQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKESTHSLQ 696
Cdd:COG3096 495 QTARELLRRYRSQQALAQR-LQQLRAQLAELeqrLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQA 573
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512970280 697 IQHQAHRLELQALEEKARQELQEERER----MQAQQA--RLLESLKQELSEQRAACSEHQKDLEMLRSA 759
Cdd:COG3096 574 AEAVEQRSELRQQLEQLRARIKELAARapawLAAQDAleRLREQSGEALADSQEVTAAMQQLLEREREA 642
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
605-748 |
4.83e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRALEQranaHRADLRELRQQAEQEAEQL---------------------RRELQDGLQQSQAARAQLeA 663
Cdd:COG3096 839 AALRQRRSELERELAQ----HRAQEQQLRQQLDQLKEQLqllnkllpqanlladetladrLEELREELDAAQEAQAFI-Q 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 664 AHQRALRALEKaKAQELKATEEHLKKESTHSLQIQHQAHRLELQ--ALEEKARQELQ---EERERMQAQQARLLESLKQE 738
Cdd:COG3096 914 QHGKALAQLEP-LVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQifALSEVVQRRPHfsyEDAVGLLGENSDLNEKLRAR 992
|
170
....*....|
gi 512970280 739 LSEQRAACSE 748
Cdd:COG3096 993 LEQAEEARRE 1002
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
601-764 |
5.77e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQEL 680
Cdd:pfam12128 681 NERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 681 KATEEHLKKESTHSLQIQHQAHRLELQALEEKA----RQELQE----ERERMQAQQA---RLLESLKQELSEQRAACSEH 749
Cdd:pfam12128 761 ASLGVDPDVIAKLKREIRTLERKIERIAVRRQEvlryFDWYQEtwlqRRPRLATQLSnieRAISELQQQLARLIADTKLR 840
|
170
....*....|....*
gi 512970280 750 QKDLEMLRSAGRMQA 764
Cdd:pfam12128 841 RAKLEMERKASEKQQ 855
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
607-758 |
5.95e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 607 LQAQVSQLQRALEqRANAHRADLRELRQQAEQEAEQLRRE---LQDGLQQSQAARAQLEAAHQRALRALEKA--KAQELK 681
Cdd:PRK09039 44 LSREISGKDSALD-RLNSQIAELADLLSLERQGNQDLQDSvanLRASLSAAEAERSRLQALLAELAGAGAAAegRAGELA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 682 ATEEHLKKESTHS------LQIQHQAHRLELQALEEKarqeLQEERERMQAQQARlLESLKQELSeqrAACSEHQKDLEM 755
Cdd:PRK09039 123 QELDSEKQVSARAlaqvelLNQQIAALRRQLAALEAA----LDASEKRDRESQAK-IADLGRRLN---VALAQRVQELNR 194
|
...
gi 512970280 756 LRS 758
Cdd:PRK09039 195 YRS 197
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
598-757 |
5.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRALEQRAnahraDLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKA 677
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELE-----ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 678 QELKATEEHLKkesthslqiQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDLEMLR 757
Cdd:COG4717 149 EELEERLEELR---------ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ 219
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
617-743 |
6.81e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 617 ALEQRANAHRADLRELRQQAEQEAEQLRrELQDGL-----QQSQAARAQLEAahQRALRALEKAKAQELKATEEHLKKES 691
Cdd:PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAR-EISDSLsqlpqQQTEARRQLNEI--ERRLQTLGTPNTPLAQAQLTALQAES 182
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 512970280 692 ThslQIQHQAHRLELQALEEKARQELQEER-ERMQAQQARL---LESLKQELSEQR 743
Cdd:PRK10929 183 A---ALKALVDELELAQLSANNRQELARLRsELAKKRSQQLdayLQALRNQLNSQR 235
|
|
| ComP |
COG4585 |
Signal transduction histidine kinase ComP [Signal transduction mechanisms]; |
614-688 |
7.74e-04 |
|
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
Pssm-ID: 443642 [Multi-domain] Cd Length: 252 Bit Score: 42.30 E-value: 7.74e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512970280 614 LQRALEQRANAHRADLRELRQQAEQEAEQLR--RELQDGLQQS-QAARAQLEAAHQRALRALEKAKaQELKATEEHLK 688
Cdd:COG4585 26 LLRARRAERAAELERELAARAEEAREEERRRiaRELHDGVGQSlSAIKLQLEAARRLLDADPEAAR-EELEEIRELAR 102
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
598-697 |
8.97e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRALEQRANahradlrELRQQAEQEAEQLRRELQDGLQQSQAA--RAQLEAAHqralRALEka 675
Cdd:PRK00409 551 EELEEKKEKLQEEEDKLLEEAEKEAQ-------QAIKEAKKEADEIIKELRQLQKGGYASvkAHELIEAR----KRLN-- 617
|
90 100
....*....|....*....|..
gi 512970280 676 KAQELKATEEHLKKESTHSLQI 697
Cdd:PRK00409 618 KANEKKEKKKKKQKEKQEELKV 639
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
597-743 |
1.16e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 42.41 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 597 PEDWQSQKAQLQAQVSQLQRALeQRANAHRADLREL---RQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALE 673
Cdd:pfam00529 53 PTDYQAALDSAEAQLAKAQAQV-ARLQAELDRLQALeseLAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRV 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512970280 674 KAK-----AQELKATEEHLKKESTHSLQIQHQAHRLELQAL--EEKARQELQEERERMQAQQARLLESLKQELSEQR 743
Cdd:pfam00529 132 LAPiggisRESLVTAGALVAQAQANLLATVAQLDQIYVQITqsAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLE 208
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
315-882 |
1.23e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 315 NSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTENDVLGEASDLEAHSLHPQQDQ--SLPKECPSMKGGTDIQSK 392
Cdd:pfam12128 289 NQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQlpSWQSELENLEERLKALTG 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 393 KEANVEtecmkQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDLVKKHTVEiksvRCSVEAERKKLQKEVEAQVEEVKKKS 472
Cdd:pfam12128 369 KHQDVT-----AKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVA----EDDLQALESELREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 473 EKEIRQLEEEKSALNvqlqsswlEVLRLEEFIQQHKVSPQRAEERPQELDSQPCSILESQDPCSKLEEPSRTLPREDRQH 552
Cdd:pfam12128 440 YRLKSRLGELKLRLN--------QATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 553 KLAAEEGPSSDEEE---------------RTEVPLEEEHdLQPPLSSSLKEKTpdtQCPPEDWQSQKAQLQAQVS---QL 614
Cdd:pfam12128 512 SRRLEERQSALDELelqlfpqagtllhflRKEAPDWEQS-IGKVISPELLHRT---DLDPEVWDGSVGGELNLYGvklDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 615 QRALEQRANAHRADLRELRQQAEQEaeqlrrelqdgLQQSQAARAQLEAAHQRALRALEKAKAQE------LKATEEHLK 688
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEA-----------LQSAREKQAAAEEQLVQANGELEKASREEtfartaLKNARLDLR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 689 KesthsLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDlemlrsagrMQATVLY 768
Cdd:pfam12128 657 R-----LFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTE---------KQAYWQV 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 769 PGDSEDREVPSEDCGGPGAAEPGAGEGCGLREENAQLRDA-------VVRLRAEAEQHQQEARQLREQRRLLEEGHQAQR 841
Cdd:pfam12128 723 VEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASlgvdpdvIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQ 802
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 512970280 842 arevETLRQEHQKeMQAVVADFSGAQARLQARLAALEAELK 882
Cdd:pfam12128 803 ----ETWLQRRPR-LATQLSNIERAISELQQQLARLIADTK 838
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
601-759 |
1.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQ---RALEQRANAHRA---------DLRELR---QQAEQEAEQLR------RELQDGLQQSQAARA 659
Cdd:COG4913 623 EEELAEAEERLEALEaelDALQERREALQRlaeyswdeiDVASAEreiAELEAELERLDassddlAALEEQLEELEAELE 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 660 QLEAAhQRALRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEERERmqaqqaRLLESLKQEL 739
Cdd:COG4913 703 ELEEE-LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER------ELRENLEERI 775
|
170 180
....*....|....*....|
gi 512970280 740 SEQRAACSEHQKDLEMLRSA 759
Cdd:COG4913 776 DALRARLNRAEEELERAMRA 795
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
42-325 |
1.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 42 KKIAQLTKVIYALNTRQDEAQAGVEALREAhQEELQSVVAETKARLLQEQGHPKDDEEAL----FRRIQ---ALeSALEL 114
Cdd:PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQ-QEENEARAEAAEEEVDELKSQLADYQQALdvqqTRAIQyqqAV-QALER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 115 QKKLTQEA--LAESATCRLET---KERELRVEAEHAERVLTLSKEMLELKADYEKRLRHLANHEGPP----WGR-LSQER 184
Cdd:PRK04863 426 AKQLCGLPdlTADNAEDWLEEfqaKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdVAReLLRRL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 185 PEAKAESGQVPGMQEVLLE----------VERLRAE-NQQLSQDYAhKAEELQATYEReneaiRQAMQQSVSEALWQWQE 253
Cdd:PRK04863 506 REQRHLAEQLQQLRMRLSEleqrlrqqqrAERLLAEfCKRLGKNLD-DEDELEQLQEE-----LEARLESLSESVSEARE 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 254 KESDLRKnfqvQESALQAQVRKLEGD----------LEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAK 323
Cdd:PRK04863 580 RRMALRQ----QLEQLQARIQRLAARapawlaaqdaLARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQ 655
|
..
gi 512970280 324 KL 325
Cdd:PRK04863 656 AL 657
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-727 |
1.58e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 42 KKIAQLTKVIYALNTR----QDEAQAGVEALREAHQEELQSVVAETKARLLQEQGHPKDDEEALFRRIQALESALELQKK 117
Cdd:pfam02463 264 EEKLAQVLKENKEEEKekklQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 118 LTQEALAESAtcrLETKERELRVEAEHAERVLTLSKEMLELKADYEKRLRHLANHEGPPWGRLSQERPEAKAESGQVPGM 197
Cdd:pfam02463 344 LKELEIKREA---EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 198 QEVLLEVERLRAENQQLSQDYAHKAEELQATYERENEAIRQAMQQSVS--EALWQWQEKESDLRKNFQVQESALQAQVRK 275
Cdd:pfam02463 421 LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKksEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 276 LEGDLEHRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLMLQEC--HVTQKADDMKTE 353
Cdd:pfam02463 501 KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLvrALTELPLGARKL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 354 NDVLGEASDLEAHSLHPQQDQSLPKECPSMKGGTDIQSKKEANVETECMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLE 433
Cdd:pfam02463 581 RLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 434 DLVKKHTVEIKSVRCSVEAERKKLQKEVEAQVEEVKKKSEKEIRQLEEEKSALNVQLQsswLEVLRLEEFIQQHKVSPQR 513
Cdd:pfam02463 661 KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE---AEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 514 AEERPQELDSQPCSILESqdpcskleepsrtlpredRQHKLAAEEGPSSDEEERTEVPLEEEHDLQPPLSSSLKEKTpdt 593
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKS------------------RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL--- 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 594 qcppedwQSQKAQLQAQVSQLQRALEQranAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALE 673
Cdd:pfam02463 797 -------KAQEEELRALEEELKEEAEL---LEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 512970280 674 KAKAQELKATEEHLKKESTHSLQiqhqahrlELQALEEKARQELQEERERMQAQ 727
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELE--------SKEEKEKEEKKELEEESQKLNLL 912
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-463 |
1.78e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 203 EVERLRAENQQLSQDYahkaEELQATYERENEAIRQAMQQ-SVSEALWqwqEKESDLRKNFQVQESALQAQVRKLEGDLE 281
Cdd:TIGR04523 413 QIKKLQQEKELLEKEI----ERLKETIIKNNSEIKDLTNQdSVKELII---KNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 282 HRGRKISDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLmlqechvTQKADDMKTENDVLgEAS 361
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI-------SDLEDELNKDDFEL-KKE 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 362 DLEAHSLHPQQDQSLPKEcpsmkggtDIQSKKEANVETECMKQQYEEDLHEIRRQTeEEKKHLQDQLLKRLEDLVKKHTv 441
Cdd:TIGR04523 558 NLEKEIDEKNKEIEELKQ--------TQKSLKKKQEEKQELIDQKEKEKKDLIKEI-EEKEKKISSLEKELEKAKKENE- 627
|
250 260
....*....|....*....|..
gi 512970280 442 EIKSVRCSVEAERKKLQKEVEA 463
Cdd:TIGR04523 628 KLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
295-644 |
1.89e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 295 QKLKEKIQDLDVQLREARQENSELKSTAKKLGEKLAVAKDRLMLQECHVTQKADDMKTENdvlGEASDLEAhslhpqQDQ 374
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELEE------DLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 375 SLPKEcpsmkggtdIQSKKEANVETECMKQQYEEDLHEIRRQTEEEKKHLQDQLLKRLEDL---VKKHTVEIKSVRCSVE 451
Cdd:TIGR02169 748 SLEQE---------IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElskLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 452 AERKKLQKEvEAQVEEVKKKSEKEIRQLEEEKSALNVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQpcsiles 531
Cdd:TIGR02169 819 QKLNRLTLE-KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE------- 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 532 qdpCSKLEEPSRTLPREDRQHKLAAEEGPSSDEE--ERTEVPLEEEHDLQPPLSSSLKEktPDTQCPPEDWQSQKAQLQA 609
Cdd:TIGR02169 891 ---RDELEAQLRELERKIEELEAQIEKKRKRLSElkAKLEALEEELSEIEDPKGEDEEI--PEEELSLEDVQAELQRVEE 965
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 512970280 610 QVSQLQ----RALEQ--RANAHRADLRELRQQAEQEAEQLR 644
Cdd:TIGR02169 966 EIRALEpvnmLAIQEyeEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
645-887 |
1.93e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.98 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 645 RELQDGLQQSQAARAQLEAAHQrALRALEKAKAQELKATEEHLKKESTHSLQIQhQAHRLELQALEEkarQELQEERERM 724
Cdd:COG0497 144 RELLDAFAGLEELLEEYREAYR-AWRALKKELEELRADEAERARELDLLRFQLE-ELEAAALQPGEE---EELEEERRRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 725 QAqqarlLESLKQELSEQRAACSEHQKD-LEMLRSAGR-MQATVLYPGDSEDrevpsedcggpgAAEPgagegcgLREEN 802
Cdd:COG0497 219 SN-----AEKLREALQEALEALSGGEGGaLDLLGQALRaLERLAEYDPSLAE------------LAER-------LESAL 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 803 AQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEGHQAQR-----AREVETLRQEHQKEMQAvVADFSGAQARLQARLAAL 877
Cdd:COG0497 275 IELEEAASELRRYLDSLEFDPERLEEVEERLALLRRLARkygvtVEELLAYAEELRAELAE-LENSDERLEELEAELAEA 353
|
250
....*....|
gi 512970280 878 EAELKDSGEK 887
Cdd:COG0497 354 EAELLEAAEK 363
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
598-841 |
1.98e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.99 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 598 EDWQSQKAQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLR--RELQDGLQQSQAARAQLEAAhqraLRALEKA 675
Cdd:PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRklRETQNTLNQLNKQIDELNAS----IAKLEQQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 676 KAQELKATEEHLkkeSTHSLQIQHQAHRLELQALEEK--------------ARQE----LQEERERMQAQQARLLESLKQ 737
Cdd:PRK11637 119 QAAQERLLAAQL---DAAFRQGEHTGLQLILSGEESQrgerilayfgylnqARQEtiaeLKQTREELAAQKAELEEKQSQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 738 E---LSEQRAAcsehQKDLEMLRSAGRMQATVLYPGDSEDREVPSEdcggpgaaepgagegcgLREENAQLRDAVVRlrA 814
Cdd:PRK11637 196 QktlLYEQQAQ----QQKLEQARNERKKTLTGLESSLQKDQQQLSE-----------------LRANESRLRDSIAR--A 252
|
250 260
....*....|....*....|....*..
gi 512970280 815 EAEQHQQEARQLREQRRLLEEGHQAQR 841
Cdd:PRK11637 253 EREAKARAEREAREAARVRDKQKQAKR 279
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
606-848 |
2.12e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 606 QLQAQVSQLQRALEQRANAHR--ADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKA-----Q 678
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEEliAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAElnsklA 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 679 ELKATEEHLKKESTHSLQIQHQAHRLE--------LQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQ 750
Cdd:PRK02224 583 ELKERIESLERIRTLLAAIADAEDEIErlrekreaLAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYL 662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 751 KDLEmlrsagrmqatvlyPGDSEDREVPSEDCGGPGAAEPGAGEGCGLREENAQLRDAVVRLRA---EAEQHQQEARQLR 827
Cdd:PRK02224 663 EQVE--------------EKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAlydEAEELESMYGDLR 728
|
250 260
....*....|....*....|.
gi 512970280 828 EQrrlleeghqaQRAREVETL 848
Cdd:PRK02224 729 AE----------LRQRNVETL 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
611-727 |
2.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 611 VSQLQRALEQRANAHRADLRELRQQaEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQELKATEEHLKKe 690
Cdd:COG4942 141 LKYLAPARREQAEELRADLAELAAL-RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL- 218
|
90 100 110
....*....|....*....|....*....|....*..
gi 512970280 691 sthslqiqhQAHRLELQALEEKARQELQEERERMQAQ 727
Cdd:COG4942 219 ---------QQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| RapA_C |
pfam12137 |
RNA polymerase recycling family C-terminal; This domain is found in bacteria. This domain is ... |
605-709 |
2.55e-03 |
|
RNA polymerase recycling family C-terminal; This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with pfam00271, pfam00176. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement.
Pssm-ID: 432354 Cd Length: 359 Bit Score: 41.37 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRAL-EQRANAHRADLRELRQQAEQEAEQLRRELQDglQQSQAARAQLEAAHQR--ALRALEKA-KAQEL 680
Cdd:pfam12137 254 ESLNRQLSPVNRHTaRKLVKAQRDLIEKLLAKAEQLAEEQAEALIE--QAKARMDQTLSAELERleALQAVNPNiRDDEI 331
|
90 100
....*....|....*....|....*....
gi 512970280 681 kateEHLKKESTHSLQIQHQAhRLELQAL 709
Cdd:pfam12137 332 ----EALEEQRAQLLAALDQA-RLRLDAI 355
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
601-753 |
2.64e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 601 QSQKAQLQAQVSQLQRALEQRANAHRAdLRELRQQAEQEA-EQLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKAQE 679
Cdd:PRK04863 934 PEQFEQLKQDYQQAQQTQRDAKQQAFA-LTEVVQRRAHFSyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQ 1012
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512970280 680 LKATEehlKKESTHSLQIQHQAHRLELQALEekarQELQE----ERERMQAQQARLLESLKQELSEQRAACSEHQKDL 753
Cdd:PRK04863 1013 AQLAQ---YNQVLASLKSSYDAKRQMLQELK----QELQDlgvpADSGAEERARARRDELHARLSANRSRRNQLEKQL 1083
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
106-549 |
2.95e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 106 QALESAL-----ELQKKLTQEALAESATCRLETKERELRVEAEHA----ERVLTLSKEMLELKADYEKRLRHLANHEGPP 176
Cdd:TIGR00606 635 QDEESDLerlkeEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKST 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 177 WGRLSQERPEAKAESGQVPGMQEVL----LEVERLRAENQQLSQDYAHKAEELQAtyereneairqamQQSVSEALWQWQ 252
Cdd:TIGR00606 715 ESELKKKEKRRDEMLGLAPGRQSIIdlkeKEIPELRNKLQKVNRDIQRLKNDIEE-------------QETLLGTIMPEE 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 253 EKESDLRKNFQVQESaLQAQVRKLEGDLEHRGRKI--SDLKKYGQKLKEKIQDLDVQLREARQENSELKSTAKKLGEkla 330
Cdd:TIGR00606 782 ESAKVCLTDVTIMER-FQMELKDVERKIAQQAAKLqgSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE--- 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 331 vakdrlmlQECHVTQKADDMKTENDVLGEAsdLEAHSLHPQQDQSLPKECPSMKggTDIQSKKEANVETECMKQQYEEDL 410
Cdd:TIGR00606 858 --------QIQHLKSKTNELKSEKLQIGTN--LQRRQQFEEQLVELSTEVQSLI--REIKDAKEQDSPLETFLEKDQQEK 925
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 411 HEIRRQTEEEKKHLQDQLlkrleDLVKKHTVEIKSVRCSVEaerKKLQKEVEAQVEEVKKKSEKEIRQLEE-----EKSA 485
Cdd:TIGR00606 926 EELISSKETSNKKAQDKV-----NDIKEKVKNIHGYMKDIE---NKIQDGKDDYLKQKETELNTVNAQLEEcekhqEKIN 997
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512970280 486 LNVQLQSSWLEVLRLEEFIQQHKVSPQRAEERPQELDSQPCS---------ILESQDPCSKLEEPSRTLPRED 549
Cdd:TIGR00606 998 EDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEENIDLIKRNH 1070
|
|
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
597-667 |
3.07e-03 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 41.08 E-value: 3.07e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512970280 597 PEDWQSQKAQLQAQVSQLQRALEQ-RANAHRAdlRELRQQ---AEQEAEQLRRELQDGLQQSQAARAQLEAAHQR 667
Cdd:COG0845 56 PPDLQAALAQAQAQLAAAQAQLELaKAELERY--KALLKKgavSQQELDQAKAALDQAQAALAAAQAALEQARAN 128
|
|
| DUF4456 |
pfam14644 |
Domain of unknown function (DUF4456); This domain family is found in bacteria and eukaryotes, ... |
613-741 |
3.27e-03 |
|
Domain of unknown function (DUF4456); This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. There is a single completely conserved residue E that may be functionally important.
Pssm-ID: 464232 Cd Length: 209 Bit Score: 39.96 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 613 QLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGL--------QQSQAARAQLEAAHQRALRALEKAKAQELKATE 684
Cdd:pfam14644 22 QIPETFEQCAENIQQKLLSYQEQADEYHNSCLQELRNQVerleellpSVPELIFESLLKRHLQKLERAMKNIAAEFSQKQ 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512970280 685 ---EHLKKESTHSL--QIQHQAHRLELQAL--EEKARQelQEERERMQAQQARLLESLKQELSE 741
Cdd:pfam14644 102 kqlEQLKQQHEQQLrpTLGHPQNAQELEQLcdREEDRQ--KEHIELIQAHREALLEAVDKVAST 163
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
656-769 |
3.31e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 656 AARAQLEAAHQ-RALRALEKaKAQELKATEEHLKKESthslQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLE- 733
Cdd:COG0542 399 AARVRMEIDSKpEELDELER-RLEQLEIEKEALKKEQ----DEASFERLAELRDELAELEEELEALKARWEAEKELIEEi 473
|
90 100 110
....*....|....*....|....*....|....*..
gi 512970280 734 -SLKQELSEQRAACSEHQKDLEMLRSAGRMQATVLYP 769
Cdd:COG0542 474 qELKEELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
602-738 |
3.32e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.54 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 602 SQKAQlQAQVSQLQRALEQRAnahRADLRELRQQAEQEAEQLRRELQD------GLQQSQAARAQLEAAHQRALRALEKA 675
Cdd:PTZ00491 660 TTKSQ-EAAARHQAELLEQEA---RGRLERQKMHDKAKAEEQRTKLLElqaesaAVESSGQSRAEALAEAEARLIEAEAE 735
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512970280 676 -KAQELKATEEHLKKESthSLQIQHQAHRLELQALEEKARQELQEERERMQAQQ---ARLLESLKQE 738
Cdd:PTZ00491 736 vEQAELRAKALRIEAEA--ELEKLRKRQELELEYEQAQNELEIAKAKELADIEAtkfERIVEALGRE 800
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
605-753 |
3.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLR--RELQDGLQQSQAARAQLEAAHQRALRALEKAKAqeLKA 682
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEK--LLQ 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512970280 683 TEEHLKKESTHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRAACSEHQKDL 753
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL 197
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
628-758 |
4.13e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 628 DLRELRQQAEQeAEQLR---RELQDGLQQSQAARAQLEAAHQRALRALEKAK-----AQELKATEEHLK--KESTHSLQI 697
Cdd:PRK04863 504 RLREQRHLAEQ-LQQLRmrlSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleqlQEELEARLESLSesVSEARERRM 582
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512970280 698 QHQAHRLELQALEEKARQ------ELQEERERMQAQQARLLESlKQELSEQRAACSEHQKDLEMLRS 758
Cdd:PRK04863 583 ALRQQLEQLQARIQRLAArapawlAAQDALARLREQSGEEFED-SQDVTEYMQQLLERERELTVERD 648
|
|
| DUF4407 |
pfam14362 |
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins ... |
701-880 |
4.47e-03 |
|
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.
Pssm-ID: 464151 [Multi-domain] Cd Length: 295 Bit Score: 40.31 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 701 AHRLELQALEEKARQELQEERERMQAQQARLLESL----KQELSEQRAACSEHQKDLEMLRSAGRMQATVLYPGDSedre 776
Cdd:pfam14362 96 SEPLELKIFEKEIDRELLEIQQEEADAAKAQLAAAyrarLAELEAQIAALDAEIDAAEARLDALQAEARCELDGTP---- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 777 vpsedcgGPGAAEPGAGEGCglREENAQLRDAVVRLRAEAEQHQQEARQLREQRrlleEGHQAQRAREVETLrqehqkem 856
Cdd:pfam14362 172 -------GTGTGVPGDGPVA--KTKQAQLDAAQAELAALQAQNDARLAALRAEL----ARLTAERAAARARS-------- 230
|
170 180
....*....|....*....|....
gi 512970280 857 QAVVADFSGAQARLQArLAALEAE 880
Cdd:pfam14362 231 QAAIDGDDGLLARLEA-LNRLTTE 253
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
606-744 |
4.55e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 606 QLQAQVSQLQRALEQRAnahrADLRELRqqaeQEAEQLRRELQDglqqsqaARAQLEAAHQRALRALEKAKAQELKAtee 685
Cdd:PRK00409 520 ELIASLEELERELEQKA----EEAEALL----KEAEKLKEELEE-------KKEKLQEEEDKLLEEAEKEAQQAIKE--- 581
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 512970280 686 hLKKESThslQIQHQAHRLELQALEEKARQELQEERERMQAQQARLLESLKQELSEQRA 744
Cdd:PRK00409 582 -AKKEAD---EIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
607-838 |
4.83e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 607 LQAQVSQLQRALEQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQLEAAHQRALR----ALEKAKAQ---- 678
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAfldaDIETAAADqeql 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 679 -----ELKATEEHLKKESTHSLQIQHQAHRLELQALEE---------KARQELQEERERMQAQQARLLESLKQELSEQ-R 743
Cdd:pfam12128 350 pswqsELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdiagikDKLAKIREARDRQLAVAEDDLQALESELREQlE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 744 AACSEHQKDLEMLRSA-----GRMQATVLYPGDSEDREVPSEDCGGPGAAEpgagEGCGLREENAQLRDAVVRLRAE--A 816
Cdd:pfam12128 430 AGKLEFNEEEYRLKSRlgelkLRLNQATATPELLLQLENFDERIERAREEQ----EAANAEVERLQSELRQARKRRDqaS 505
|
250 260
....*....|....*....|..
gi 512970280 817 EQHQQEARQLREQRRLLEEGHQ 838
Cdd:pfam12128 506 EALRQASRRLEERQSALDELEL 527
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
589-752 |
5.79e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 589 KTPDTQCPPEDWQSQK-AQLQAQVSQLQRALeQRANAHRADLRELRQQAEQEAEQLRRELQDGLQQSQAARAQL--EAAH 665
Cdd:PRK11281 107 KDDNDEETRETLSTLSlRQLESRLAQTLDQL-QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLkgGKVG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 666 QRALRALEKAKAQ-ELKATEehlkkesthsLQIQHQAHRLE----LQALEEKARQELQEERERMQAQQARLLESLKQ--- 737
Cdd:PRK11281 186 GKALRPSQRVLLQaEQALLN----------AQNDLQRKSLEgntqLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSkrl 255
|
170
....*....|....*
gi 512970280 738 ELSEQRAACSEHQKD 752
Cdd:PRK11281 256 TLSEKTVQEAQSQDE 270
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
605-745 |
7.35e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.24 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 605 AQLQAQVSQLQRALEQRANAHRADLRELRQQAEQEAE--QLRRELQDGLQQSQAARAQLEAAHQRALRALEKAKA---QE 679
Cdd:COG2268 188 ALGRRKIAEIIRDARIAEAEAERETEIAIAQANREAEeaELEQEREIETARIAEAEAELAKKKAEERREAETARAeaeAA 267
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512970280 680 LKATEEHLKKESTHSLQIQHQAHRLELQAlEEKARQELQEERERMQAQQARLLESLKQELSEQRAA 745
Cdd:COG2268 268 YEIAEANAEREVQRQLEIAEREREIELQE-KEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAI 332
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
630-880 |
8.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 630 RELRQQAEQEAEQLRRELQdglqqsqAARAQLEAAhQRALRALEKAKAQELKATEEHLKKESTHSLQIQHQAHRLELQAL 709
Cdd:COG4913 609 RAKLAALEAELAELEEELA-------EAEERLEAL-EAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 710 eEKARQELQEERERMQAQQARL--LESLKQELSEQRAACSEHQKDLEMLRSAGRMQAtvlypgdsedrevpsEDCGGPGA 787
Cdd:COG4913 681 -DASSDDLAALEEQLEELEAELeeLEEELDELKGEIGRLEKELEQAEEELDELQDRL---------------EAAEDLAR 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 788 AEPgagegcglreenAQLRDAVVRLRAEAEQHQQEARQLREQRRLLEEgHQAQRAREVETLRQEHQKEMQAVVADFSGAQ 867
Cdd:COG4913 745 LEL------------RALLEERFAAALGDAVERELRENLEERIDALRA-RLNRAEEELERAMRAFNREWPAETADLDADL 811
|
250
....*....|....*.
gi 512970280 868 ARL---QARLAALEAE 880
Cdd:COG4913 812 ESLpeyLALLDRLEED 827
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
614-727 |
9.98e-03 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 37.42 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512970280 614 LQRALEQRANAHRADLRELrQQAEQEAEQLRRElqdglqqsqaARAQLEAAHQRALRALEKAKAQELKATEEhlkkesth 693
Cdd:cd06503 24 ILKALDEREEKIAESLEEA-EKAKEEAEELLAE----------YEEKLAEARAEAQEIIEEARKEAEKIKEE-------- 84
|
90 100 110
....*....|....*....|....*....|....
gi 512970280 694 slqIQHQAHRlELQALEEKARQELQEERERMQAQ 727
Cdd:cd06503 85 ---ILAEAKE-EAERILEQAKAEIEQEKEKALAE 114
|
|
| |
