NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|460415081|ref|XP_004252889|]
View 

homeobox-DDT domain protein RLT1-like [Solanum lycopersicum]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
20-75 1.39e-17

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 76.38  E-value: 1.39e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 460415081   20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
20-75 1.39e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 76.38  E-value: 1.39e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 460415081   20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 20-74 9.55e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.51  E-value: 9.55e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 460415081    20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDK 74
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 20-75 1.17e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.12  E-value: 1.17e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 460415081  20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
SASP COG5864
Small acid-soluble spore protein SAS2, clostridial type [Cell cycle control, cell division, ...
 43-86 8.91e-04

Small acid-soluble spore protein SAS2, clostridial type [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444566  Cd Length: 67  Bit Score: 37.68  E-value: 8.91e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 460415081  43 PTESMKLEVAQSLGLTEK-QVSGWfchrrlkdKRLSSRETnakGR 86
Cdd:COG5864   12 PLEKLKYEIAEELGLLDKvEKEGW--------GSLTARET---GR 45
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
20-75 1.39e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 76.38  E-value: 1.39e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 460415081   20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 20-74 9.55e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.51  E-value: 9.55e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 460415081    20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDK 74
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 20-75 1.17e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.12  E-value: 1.17e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 460415081  20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 38-66 2.88e-05

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 40.96  E-value: 2.88e-05
                          10        20
                  ....*....|....*....|....*....
gi 460415081   38 QEHKYPTESMKLEVAQSLGLTEKQVSGWF 66
Cdd:pfam05920   5 LHNPYPSEEEKAELAKETGLSRKQISNWF 33
SASP COG5864
Small acid-soluble spore protein SAS2, clostridial type [Cell cycle control, cell division, ...
 43-86 8.91e-04

Small acid-soluble spore protein SAS2, clostridial type [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444566  Cd Length: 67  Bit Score: 37.68  E-value: 8.91e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 460415081  43 PTESMKLEVAQSLGLTEK-QVSGWfchrrlkdKRLSSRETnakGR 86
Cdd:COG5864   12 PLEKLKYEIAEELGLLDKvEKEGW--------GSLTARET---GR 45
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
22-80 1.69e-03

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 39.34  E-value: 1.69e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 460415081  22 RIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKRLSSRE 80
Cdd:COG5576   55 RRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH