NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|403263688|ref|XP_003924149|]
View 

transcription factor YY2 [Saimiri boliviensis boliviensis]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
280-371 3.05e-06

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 3.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 280 KVHVCAECGKSFIESSKLKRHQ--LVHTGE--KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPFVCPFDICNRRFAQST 355
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367

                         90
                 ....*....|....*...
gi 403263688 356 NLKTH--MLTHVKNKNSQ 371
Cdd:COG5048  368 NNEPPqsLQQYKDLKNDK 385
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
280-371 3.05e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 3.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 280 KVHVCAECGKSFIESSKLKRHQ--LVHTGE--KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPFVCPFDICNRRFAQST 355
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367

                         90
                 ....*....|....*...
gi 403263688 356 NLKTH--MLTHVKNKNSQ 371
Cdd:COG5048  368 NNEPPqsLQQYKDLKNDK 385
zf-H2C2_2 pfam13465
Zinc-finger double domain;
326-353 9.60e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 9.60e-05
                          10        20
                  ....*....|....*....|....*...
gi 403263688  326 NLRTHVRIHTGDKPFVCPFdiCNRRFAQ 353
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPE--CGKSFKS 26
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
280-371 3.05e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 3.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 280 KVHVCAECGKSFIESSKLKRHQ--LVHTGE--KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPFVCPFDICNRRFAQST 355
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367

                         90
                 ....*....|....*...
gi 403263688 356 NLKTH--MLTHVKNKNSQ 371
Cdd:COG5048  368 NNEPPqsLQQYKDLKNDK 385
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
188-371 8.15e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.30  E-value: 8.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 188 SPSDNNDKGTVGEGRADNSPDYSEYMTGKKLPP-EGLPGIDLSDPKQLaeFTKMKPKRSKEEPPRTVPCAHNGCGKMFRD 266
Cdd:COG5048  258 SESPRSSLPTASSQSSSPNESDSSSEKGFSLPIkSKQCNISFSRSSPL--TRHLRSVNHSGESLKPFSCPYSLCGKLFSR 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 267 YAAMRKHLHVHGPKVHVCA---ECGKSFIESSKLKRHQLVH-----TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDK 338
Cdd:COG5048  336 NDALKRHILLHTSISPAKEkllNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFR 415

                        170       180       190
                 ....*....|....*....|....*....|...
gi 403263688 339 PFVCPFDICNRRFAQSTNLKTHMLTHVKNKNSQ 371
Cdd:COG5048  416 PYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448
zf-H2C2_2 pfam13465
Zinc-finger double domain;
326-353 9.60e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 9.60e-05
                          10        20
                  ....*....|....*....|....*...
gi 403263688  326 NLRTHVRIHTGDKPFVCPFdiCNRRFAQ 353
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPE--CGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
279-360 9.98e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.30  E-value: 9.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403263688 279 PKVHVCAECGKSFIESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPFVCPFDICNRRFAQSTNLK 358
Cdd:COG5048   31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSL 110


                 ..
gi 403263688 359 TH 360
Cdd:COG5048  111 SS 112
zf-H2C2_2 pfam13465
Zinc-finger double domain;
297-322 1.68e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.51  E-value: 1.68e-04
                          10        20
                  ....*....|....*....|....*.
gi 403263688  297 LKRHQLVHTGEKPFQCTFegCGKRFS 322
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPE--CGKSFK 25
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 302-360 6.65e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 41.63  E-value: 6.65e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 403263688 302 LVHTGEKPFQCTFEGCGKRFSLDFNLRTHvRIH--------------------TGDKPFVCPFdiCNRRFAQSTNLKTH 360
Cdd:COG5189  342 LKVKDGKPYKCPVEGCNKKYKNQNGLKYH-MLHghqnqklhenpspekmnifsAKDKPYRCEV--CDKRYKNLNGLKYH 417
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 282-304 8.71e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.12  E-value: 8.71e-04
                          10        20
                  ....*....|....*....|...
gi 403263688  282 HVCAECGKSFIESSKLKRHQLVH 304
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH