NCBI Conserved Domain Search

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

268-967

0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 587.35 E-value: 0e+00

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLD---------MAILHYKQAVACDPRFLEA 338
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAeaaaaallaLAAGEAAAAAAALLLLAAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 339 YNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMewnmvaaaaqyykatlnvttglsapynnlaiiykQQG 418
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL----------------------------------ALG 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 419 NYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQA 498
Cdd:COG3914  127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 499 LILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESIIRRQINMSvlpsvqPFHAIAYP-LDPMLALEISRKYAAHCsvi 577
Cdd:COG3914  207 LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS------PFALLYLPdDDPAELLALARAWAQLV--- 277

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 578 asRFALPPFNHPSPIPIKREGgyeRLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSAnDGTEWRQRIQSEAE 657
Cdd:COG3914  278 --AAAAAPELPPPPNPRDPDR---KLRIGYVSADFRRHAVGYLLEPLLEHHDRSRFEIYAYSTGP-DDDALTQRLRAAAD 351

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 658 HFVDVSAMSSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLGYANI 737
Cdd:COG3914  352 HWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAY 431

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 738 YSEKIVHLPHCYFvndYKQKNQDVLDPNCPHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFP 817
Cdd:COG3914  432 YSEKLVRLPGSYL---CYQPNDRAPEVAPLPTRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGG 508

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 818 -AAGEMRLRAYAAAQGVQPDQIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 896
Cdd:COG3914  509 lPEARERLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGAS 588

                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 356535232 897 LCLATGLgDEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNLERSYFKMWNLHC 967
Cdd:COG3914  589 LLTALGL-PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRWC 658

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

102-366

1.73e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 173.76 E-value: 1.73e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 102 LLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGR 181
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 182 LTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAV 261
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 262 KLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRfLEAYNN 341
Cdd:COG2956  172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                        250       260
                 ....*....|....*....|....*
gi 356535232 342 LGNALKDVGRVEEAIQCYNQCLTLQ 366
Cdd:COG2956  251 LADLLERKEGLEAALALLERQLRRH 275

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

54-115

7.06e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 7.06e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  54 LRGHDSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNP---LRTDNLLLLGAVYYQLHDFD 115
Cdd:COG1729   20 LKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYD 84

Name

Accession

Description

Interval

E-value

Spy

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

268-967

0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 587.35 E-value: 0e+00

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLD---------MAILHYKQAVACDPRFLEA 338
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAeaaaaallaLAAGEAAAAAAALLLLAAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 339 YNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMewnmvaaaaqyykatlnvttglsapynnlaiiykQQG 418
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL----------------------------------ALG 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 419 NYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQA 498
Cdd:COG3914  127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 499 LILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESIIRRQINMSvlpsvqPFHAIAYP-LDPMLALEISRKYAAHCsvi 577
Cdd:COG3914  207 LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS------PFALLYLPdDDPAELLALARAWAQLV--- 277

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 578 asRFALPPFNHPSPIPIKREGgyeRLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSAnDGTEWRQRIQSEAE 657
Cdd:COG3914  278 --AAAAAPELPPPPNPRDPDR---KLRIGYVSADFRRHAVGYLLEPLLEHHDRSRFEIYAYSTGP-DDDALTQRLRAAAD 351

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 658 HFVDVSAMSSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLGYANI 737
Cdd:COG3914  352 HWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAY 431

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 738 YSEKIVHLPHCYFvndYKQKNQDVLDPNCPHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFP 817
Cdd:COG3914  432 YSEKLVRLPGSYL---CYQPNDRAPEVAPLPTRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGG 508

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 818 -AAGEMRLRAYAAAQGVQPDQIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 896
Cdd:COG3914  509 lPEARERLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGAS 588

                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 356535232 897 LCLATGLgDEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNLERSYFKMWNLHC 967
Cdd:COG3914  589 LLTALGL-PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRWC 658

Glyco_transf_41

pfam13844

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...

519-955

3.06e-174

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.

Pssm-ID: 404688 Cd Length: 543 Bit Score: 518.49 E-value: 3.06e-174

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  519 VCCWEDRDKMFKEVESIIRRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFALPPFNHPSPIPIKreG 598
Cdd:pfam13844   1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLS--G 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  599 GyeRLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSANDGTEWRQRIQSEAEHFVDVSAMSSD-AIAKMINED 677
Cdd:pfam13844  79 G--RLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNgKAADRIHAD 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  678 KIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLGYANIYSEKIVHLPHCYFVNDYKQ- 756
Cdd:pfam13844 157 GIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQm 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  757 ----KNQDVLD--------------------------------------------------------------------- 763
Cdd:pfam13844 237 fphlKERAIVTdksdgtkvrdnvavvnatdlkpllektevkdkvkevvvvettgnsrdsskvevvlpvielpttepiesm 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  764 ---------------PNCP------HK---------------RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVP 807
Cdd:pfam13844 317 iqsgqiqtsvngvvvQNGLattqtnNKaatgeevpssivvttRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  808 NSALWLLRFPAAGEMRLRAYAAAQGVQPDQIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLE 887
Cdd:pfam13844 397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232  888 KMATRVAGSLcLATgLG-DEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNL 955
Cdd:pfam13844 477 TLASRVAASQ-LAT-LGcPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

102-366

1.73e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 173.76 E-value: 1.73e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 102 LLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGR 181
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 182 LTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAV 261
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 262 KLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRfLEAYNN 341
Cdd:COG2956  172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                        250       260
                 ....*....|....*....|....*
gi 356535232 342 LGNALKDVGRVEEAIQCYNQCLTLQ 366
Cdd:COG2956  251 LADLLERKEGLEAALALLERQLRRH 275

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-498

6.37e-36

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 147.15 E-value: 6.37e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG 477

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYL 224
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  225 EALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA 304
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  305 YGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWN 384
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  385 MVAAAAQYYKATLNvTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRA 464
Cdd:TIGR02917 718 DYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 356535232  465 IVVRPTMAEAHANLASAY---KDSGHVEAAVKSYKQA 498
Cdd:TIGR02917 797 VKKAPDNAVVLNNLAWLYlelKDPRALEYAERALKLA 833

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-431

6.82e-27

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 118.26 E-value: 6.82e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYL 224
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  225 EALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSfPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA 304
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  305 YGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDvGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWN 384
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 356535232  385 MVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVL 431
Cdd:TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

211-365

4.34e-09

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 59.18 E-value: 4.34e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 211 KAQGLVQ-----EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPS-FPDAYLNLGNvykaLGMP 284
Cdd:cd24142    6 KAEELLDqgnfeLALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQ----LSGG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 285 QEAIACYQHALQ----------------------TRPNYGMAYGNLASIYyeQGQLDM----------AIlhyKQAVACD 332
Cdd:cd24142   82 EEALQYYEKGIEileeelqalqaasaeaeeeaeeLKRKLSSALCALAEIY--MTDLCDepdaeqrceeLI---TKALELD 156

                        170       180       190
                 ....*....|....*....|....*....|...
gi 356535232 333 PRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTL 365
Cdd:cd24142  157 PTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

244-367

1.41e-08

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 56.79 E-value: 1.41e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 244 FMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNvykalgmpqeaiacyqhalqtrpnygmaygnlasIYYEQGQLDMAIL 323
Cdd:NF033920 166 LEQTGQPEAALAAYQTATKRWPDSWLAYFGLGN----------------------------------AAYAAGDYAAAAA 211

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 356535232 324 HYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQP 367
Cdd:NF033920 212 AFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255

TPR_11

TPR repeat;

243-282

1.53e-08

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 51.32 E-value: 1.53e-08

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  243 LFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALG 282
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

PRK11447

cellulose synthase subunit BcsC; Provisional

282-446

1.80e-08

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 58.56 E-value: 1.80e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  282 GMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP---------------RFLEAYNNLGNAL 346
Cdd:PRK11447  283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPhssnrdkwesllkvnRYWLLIQQGDAAL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  347 KdVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQG-----NYV 421
Cdd:PRK11447  363 K-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSpekalAFI 441

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 356535232  422 DAISC-----YNEVLR---IDPLA--ADGLVNRGN 446
Cdd:PRK11447  442 ASLSAsqrrsIDDIERslqNDRLAqqAEALENQGK 476

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

139-296

1.98e-08

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 56.87 E-value: 1.98e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 139 ANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLmvDAHS---NLGNLM----- 210
Cdd:cd24142    7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGYEkylYLGQLSggeea 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 211 -------------KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM---------ESgdfnRALQYYKEAVKLKPSFP 268
Cdd:cd24142   85 lqyyekgieileeELQALQAASAEAEEEAEELKRKLSSALCALAEIYMtdlcdepdaEQ----RCEELITKALELDPTNP 160

                        170       180
                 ....*....|....*....|....*...
gi 356535232 269 DAYLNLGNVYKALGMPQEAIACYQHALQ 296
Cdd:cd24142  161 EALQTLASLRISQQRPDEAKEALRRSLE 188

FxSxx_TPR

NF040586

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...

176-491

1.79e-07

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.

Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 1.79e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 176 YMRkGRLTEAAQCCRQALAI--------NPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----------PTFAIAW 237
Cdd:NF040586 403 YLR-GDYESARDLAERALERwrerlgpdDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQrrvlglgedhPHTLMTA 481

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 238 SNLAGLFMESGDFNRALQYYKEAV-KLKPSFPDAYL-------NLGNVYKALGMPQEAIACYQHALQTR--------PNY 301
Cdd:NF040586 482 GGLGADLRALGRFREALELDEETLeRHRRVFGEDHPrtlraanNLAVSLRLLGDYREALELDREVLRRRrrvlgpdhPRT 561

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 302 GMAYGNLASIYYEQGQLDMAI------LHYKQAVACDPRF---LEAYNNLGNALKDVGRVEEAIQ----CYNQCLTLQ-P 367
Cdd:NF040586 562 LLSANNLARDLRELGRYAEALdlleeaLERYREVLGGPDHpdtLRAAKSLAVALRRAGRLEEALElaedTYERYRRRFgP 641

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 368 NHPQALT---NLGNIYMEWNMVAAAAQYYKATLNV---TTGLSAPY-----NNLAIIYKQQGNYVDAiscynevLRIDPL 436
Cdd:NF040586 642 DHPDTLAaalSLANDLRALGDADEARELAREVLDRyrrVLGEDHPFtlacrNNLAVLLRALGDPEEA-------RELAEA 714

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 437 AADGL---------------VNRGNTYKEIGRVSDAI-----QDYIRAIVVRPTMAEAH-------ANLASAYKDSGHVE 489
Cdd:NF040586 715 ALEGLrerlgpdhpytlaaaVNLANDLAALGDLDAALgeealERLRRLLGEDLRAGPDHpdtlacaANLALDLRATGRTE 794


                 ..
gi 356535232 490 AA 491
Cdd:NF040586 795 EA 796

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

337-369

1.72e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 45.13 E-value: 1.72e-06

                           10        20        30
                   ....*....|....*....|....*....|...
gi 356535232   337 EAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNH 369
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

166-197

7.71e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.59 E-value: 7.71e-06

                           10        20        30
                   ....*....|....*....|....*....|..
gi 356535232   166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

344-426

8.57e-05

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 45.23 E-value: 8.57e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 344 NALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYV-- 421
Cdd:NF033920 164 QDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAqa 243


                 ....*.
gi 356535232 422 -DAISC 426
Cdd:NF033920 244 rAAAEC 249

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

166-265

9.21e-05

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 45.23 E-value: 9.21e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245
Cdd:NF033920 156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                         90       100
                 ....*....|....*....|
gi 356535232 246 ESGDFNRALQYYKEAVKLKP 265
Cdd:NF033920 236 AQGCTAQARAAAECALALAP 255

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

149-203

4.74e-04

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 43.62 E-value: 4.74e-04

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 356535232 149 DLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAH 203
Cdd:PLN03088  19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

54-115

7.06e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 7.06e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  54 LRGHDSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNP---LRTDNLLLLGAVYYQLHDFD 115
Cdd:COG1729   20 LKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYD 84

TPR_12

Tetratricopeptide repeat;

66-127

8.94e-03

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.94e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   66 VYLSLAHQMYKTGNYKQALEHSNTVYER--------NPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRI 127
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74

Name

Accession

Description

Interval

E-value

Spy

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

268-967

0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 587.35 E-value: 0e+00

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLD---------MAILHYKQAVACDPRFLEA 338
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAeaaaaallaLAAGEAAAAAAALLLLAAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 339 YNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMewnmvaaaaqyykatlnvttglsapynnlaiiykQQG 418
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL----------------------------------ALG 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 419 NYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQA 498
Cdd:COG3914  127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 499 LILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESIIRRQINMSvlpsvqPFHAIAYP-LDPMLALEISRKYAAHCsvi 577
Cdd:COG3914  207 LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS------PFALLYLPdDDPAELLALARAWAQLV--- 277

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 578 asRFALPPFNHPSPIPIKREGgyeRLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSAnDGTEWRQRIQSEAE 657
Cdd:COG3914  278 --AAAAAPELPPPPNPRDPDR---KLRIGYVSADFRRHAVGYLLEPLLEHHDRSRFEIYAYSTGP-DDDALTQRLRAAAD 351

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 658 HFVDVSAMSSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLGYANI 737
Cdd:COG3914  352 HWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAY 431

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 738 YSEKIVHLPHCYFvndYKQKNQDVLDPNCPHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFP 817
Cdd:COG3914  432 YSEKLVRLPGSYL---CYQPNDRAPEVAPLPTRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGG 508

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 818 -AAGEMRLRAYAAAQGVQPDQIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 896
Cdd:COG3914  509 lPEARERLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGAS 588

                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 356535232 897 LCLATGLgDEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNLERSYFKMWNLHC 967
Cdd:COG3914  589 LLTALGL-PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRWC 658

Glyco_transf_41

pfam13844

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...

519-955

3.06e-174

Pssm-ID: 404688 Cd Length: 543 Bit Score: 518.49 E-value: 3.06e-174

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  519 VCCWEDRDKMFKEVESIIRRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFALPPFNHPSPIPIKreG 598
Cdd:pfam13844   1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLS--G 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  599 GyeRLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSANDGTEWRQRIQSEAEHFVDVSAMSSD-AIAKMINED 677
Cdd:pfam13844  79 G--RLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNgKAADRIHAD 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  678 KIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLGYANIYSEKIVHLPHCYFVNDYKQ- 756
Cdd:pfam13844 157 GIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQm 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  757 ----KNQDVLD--------------------------------------------------------------------- 763
Cdd:pfam13844 237 fphlKERAIVTdksdgtkvrdnvavvnatdlkpllektevkdkvkevvvvettgnsrdsskvevvlpvielpttepiesm 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  764 ---------------PNCP------HK---------------RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVP 807
Cdd:pfam13844 317 iqsgqiqtsvngvvvQNGLattqtnNKaatgeevpssivvttRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  808 NSALWLLRFPAAGEMRLRAYAAAQGVQPDQIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLE 887
Cdd:pfam13844 397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232  888 KMATRVAGSLcLATgLG-DEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNL 955
Cdd:pfam13844 477 TLASRVAASQ-LAT-LGcPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

165-434

7.05e-54

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 189.17 E-value: 7.05e-54

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 165 FADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 244
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 245 MESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILH 324
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 325 YKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLS 404
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246

                        250       260       270
                 ....*....|....*....|....*....|
gi 356535232 405 ApYNNLAIIYKQQGNYVDAISCYNEVLRID 434
Cdd:COG2956  247 L-LLALADLLERKEGLEAALALLERQLRRH 275

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

139-398

1.13e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 179.92 E-value: 1.13e-50

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 139 ANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQE 218
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 219 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTR 298
Cdd:COG2956   95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 299 PNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALtNLGN 378
Cdd:COG2956  175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALAD 253

                        250       260
                 ....*....|....*....|
gi 356535232 379 IYMEWNMVAAAAQYYKATLN 398
Cdd:COG2956  254 LLERKEGLEAALALLERQLR 273

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

102-366

1.73e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 173.76 E-value: 1.73e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 102 LLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGR 181
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 182 LTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAV 261
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 262 KLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRfLEAYNN 341
Cdd:COG2956  172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                        250       260
                 ....*....|....*....|....*
gi 356535232 342 LGNALKDVGRVEEAIQCYNQCLTLQ 366
Cdd:COG2956  251 LADLLERKEGLEAALALLERQLRRH 275

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

233-499

2.62e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 170.29 E-value: 2.62e-47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 233 FAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIY 312
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 313 YEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQY 392
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 393 YKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTmA 472
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                        250       260
                 ....*....|....*....|....*..
gi 356535232 473 EAHANLASAYKDSGHVEAAVKSYKQAL 499
Cdd:COG2956  246 DLLLALADLLERKEGLEAALALLERQL 272

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

159-355

4.29e-46

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 165.95 E-value: 4.29e-46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 159 IELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 238
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 239 NLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQL 318
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 356535232 319 DMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEA 355
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

193-380

1.48e-45

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 164.41 E-value: 1.48e-45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 193 LAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYL 272
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 273 NLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRV 352
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180
                 ....*....|....*....|....*...
gi 356535232 353 EEAIQCYNQCLTLQPNHPQALTNLGNIY 380
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAAL 188

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

227-394

1.85e-45

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 164.02 E-value: 1.85e-45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 227 LRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYG 306
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 307 NLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMV 386
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                 ....*...
gi 356535232 387 AAAAQYYK 394
Cdd:COG0457  161 EEALELLE 168

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

125-365

4.56e-44

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 160.17 E-value: 4.56e-44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 125 LRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHS 204
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 205 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMP 284
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 285 QEAIACYQHALQTRPNYgmAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLT 364
Cdd:COG0457  161 EEALELLEKLEAAALAA--LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                 .
gi 356535232 365 L 365
Cdd:COG0457  239 A 239

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

206-465

2.76e-42

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 156.04 E-value: 2.76e-42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 206 LGNLMKAQGLV-----QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKA 280
Cdd:COG2956    9 LGWYFKGLNYLlngqpDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 281 LGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYN 360
Cdd:COG2956   89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 361 QCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPlAADG 440
Cdd:COG2956  169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDL 247

                        250       260
                 ....*....|....*....|....*
gi 356535232 441 LVNRGNTYKEIGRVSDAIQDYIRAI 465
Cdd:COG2956  248 LLALADLLERKEGLEAALALLERQL 272

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

295-482

4.98e-39

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 145.53 E-value: 4.98e-39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 295 LQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALT 374
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 375 NLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 454
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180
                 ....*....|....*....|....*...
gi 356535232 455 SDAIQDYIRAIVVRPTMAEAHANLASAY 482
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAAL 188

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

329-508

3.31e-38

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 143.22 E-value: 3.31e-38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 329 VACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYN 408
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 409 NLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHV 488
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180
                 ....*....|....*....|
gi 356535232 489 EAAVKSYKQALILRPDFPEA 508
Cdd:COG0457  161 EEALELLEKLEAAALAALLA 180

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

63-298

2.31e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 141.79 E-value: 2.31e-37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG2956   41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSC 222
Cdd:COG2956  121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA 200

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 223 YLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSfPDAYLNLGNVYKALGMPQEAIACYQHALQTR 298
Cdd:COG2956  201 LERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

92-330

5.78e-36

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 136.68 E-value: 5.78e-36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  92 ERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSN 171
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 172 LASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFN 251
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232 252 RALQYYKEAVKLKPSFPDAYLNLGNVYKALGmpQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVA 330
Cdd:COG0457  162 EALELLEKLEAAALAALLAAALGEAALALAA--AEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-498

6.37e-36

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 147.15 E-value: 6.37e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG 477

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYL 224
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  225 EALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA 304
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  305 YGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWN 384
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  385 MVAAAAQYYKATLNvTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRA 464
Cdd:TIGR02917 718 DYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 356535232  465 IVVRPTMAEAHANLASAY---KDSGHVEAAVKSYKQA 498
Cdd:TIGR02917 797 VKKAPDNAVVLNNLAWLYlelKDPRALEYAERALKLA 833

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

308-545

8.51e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 134.09 E-value: 8.51e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 308 LASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVA 387
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 388 AAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVV 467
Cdd:COG2956   94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 356535232 468 RPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNLLHTLQCVccwEDRDKMFKEVESIIRRQINMSVL 545
Cdd:COG2956  174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL---GDPEEALELLRKALELDPSDDLL 248

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

75-508

8.55e-33

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 137.14 E-value: 8.55e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   75 YKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRY 154
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  155 YLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 234
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  235 IAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYE 314
Cdd:TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  315 QGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLqpnHPQALtnlgniymewnmvaaaaqyyk 394
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEI--------------------- 567

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  395 atlnvttglsAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEA 474
Cdd:TIGR02917 568 ----------EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                         410       420       430
                  ....*....|....*....|....*....|....
gi 356535232  475 HANLASAYKDSGHVEAAVKSYKQALILRPDFPEA 508
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

Spy

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

68-273

2.60e-31

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 131.27 E-value: 2.60e-31

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  68 LSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGN 147
Cdd:COG3914   48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGR 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 148 IDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEAL 227
Cdd:COG3914  128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 356535232 228 RIQPTFAIAWSNLAGLFMESGD------FNRALQYYKEAVKLKPSFPDAYLN 273
Cdd:COG3914  208 ELDPDNADAHSNLLFALRQACDwevydrFEELLAALARGPSELSPFALLYLP 259

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

363-512

1.50e-30

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 120.88 E-value: 1.50e-30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 363 LTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLV 442
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 443 NRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

63-236

1.76e-30

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 120.88 E-value: 1.76e-30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSC 222
Cdd:COG0457   87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166

                        170
                 ....*....|....
gi 356535232 223 YLEALRIQPTFAIA 236
Cdd:COG0457  167 LEKLEAAALAALLA 180

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

76-513

3.78e-30

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 128.66 E-value: 3.78e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   76 KTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEA-LRIEPHFAECYGNMANAWKEKGNIDLAIRY 154
Cdd:TIGR02917  68 ALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKS 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  155 YLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 234
Cdd:TIGR02917 148 YEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  235 IAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPdaylnLGNVYKAL-----GMPQEAIACYQHALQTRPNYGMAYGNLA 309
Cdd:TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSP-----LAHYLKALvdfqkKNYEDARETLQDALKSAPEYLPALLLAG 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  310 SIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAA 389
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  390 AQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRP 469
Cdd:TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 356535232  470 TMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNLL 513
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

58-262

4.34e-29

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 117.52 E-value: 4.34e-29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  58 DSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGN 137
Cdd:COG2956   70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 138 MANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQ 217
Cdd:COG2956  150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 356535232 218 EAYSCYLEALRIQPTfAIAWSNLAGLFMESGDFNRALQYYKEAVK 262
Cdd:COG2956  230 EALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273

Spy

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

67-255

1.06e-27

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 120.10 E-value: 1.06e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  67 YLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKG 146
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 147 NIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEaYSCYLEA 226
Cdd:COG3914  161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV-YDRFEEL 239

                        170       180       190
                 ....*....|....*....|....*....|.
gi 356535232 227 LRIQPTFAIAWSNLAGLFMESGD--FNRALQ 255
Cdd:COG3914  240 LAALARGPSELSPFALLYLPDDDpaELLALA 270

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

234-369

1.37e-27

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 108.74 E-value: 1.37e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 234 AIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYY 313
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 314 EQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNH 369
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-486

2.49e-27

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 119.80 E-value: 2.49e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP-------LMVDAHSNLGNLMKA----- 212
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPqeiepalALAQYYLGKGQLKKAlailn 591

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  213 ----------------------QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDA 270
Cdd:TIGR02917 592 eaadaapdspeawlmlgraqlaAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  271 YLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNnLGNALKDVG 350
Cdd:TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASG 750

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  351 RVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVdAISCYNEV 430
Cdd:TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERA 829

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232  431 LRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSG 486
Cdd:TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

166-301

2.91e-27

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 107.97 E-value: 2.91e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 246 ESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNY 301
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-431

6.82e-27

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 118.26 E-value: 6.82e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYL 224
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  225 EALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSfPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA 304
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  305 YGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDvGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWN 384
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 356535232  385 MVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVL 431
Cdd:TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

200-335

5.55e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 104.12 E-value: 5.55e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 200 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYK 279
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 280 ALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRF 335
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

269-397

1.55e-25

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 102.96 E-value: 1.55e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 269 DAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKD 348
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 356535232 349 VGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATL 397
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

252-372

2.46e-24

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 99.31 E-value: 2.46e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 252 RALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVAC 331
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 356535232 332 DPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQA 372
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

218-333

1.62e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 93.92 E-value: 1.62e-22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 218 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQT 297
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 356535232 298 RPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP 333
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

151-272

2.79e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 93.53 E-value: 2.79e-22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 151 AIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 230
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 356535232 231 PTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYL 272
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

184-300

1.01e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 91.61 E-value: 1.01e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 184 EAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKL 263
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 356535232 264 KPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPN 300
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

63-260

1.44e-21

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.07 E-value: 1.44e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG0457   41 DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSC 222
Cdd:COG0457  121 LELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 356535232 223 YLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEA 260
Cdd:COG0457  201 LALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

155-330

1.35e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 91.52 E-value: 1.35e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 155 YLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQAL------AINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALR 228
Cdd:COG4785   22 AAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 229 IQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNL 308
Cdd:COG4785  102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 356535232 309 ASIYYE--------------------QGQLDMAILHYKQAVA 330
Cdd:COG4785  182 YLAERKldpekalallledwatayllQGDTEEARELFKLALA 223

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

308-435

2.87e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.94 E-value: 2.87e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 308 LASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVA 387
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 356535232 388 AAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDP 435
Cdd:COG4783   90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

243-337

1.37e-19

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 84.45 E-value: 1.37e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 243 LFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIAcYQHALQTRPNYGMAYGNLASIYYEQGQLDMAI 322
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 356535232 323 LHYKQAVACDPRFLE 337
Cdd:COG3063   80 AYLERALELDPSALR 94

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

286-399

2.18e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 85.06 E-value: 2.18e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 286 EAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTL 365
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 356535232 366 QPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNV 399
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

336-469

2.82e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.24 E-value: 2.82e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 336 LEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYK 415
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 356535232 416 QQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRP 469
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

101-231

6.42e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.09 E-value: 6.42e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 101 LLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKG 180
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 356535232 181 RLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 231
Cdd:COG4783   87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

118-231

8.81e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.52 E-value: 8.81e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 118 VAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 356535232 198 LMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 231
Cdd:COG4235   83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

249-432

1.10e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.12 E-value: 1.10e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 249 DFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQA 328
Cdd:COG4785   54 AAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 329 VACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKAtlnvttglsapyn 408
Cdd:COG4785  134 LELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLED------------- 200

                        170       180
                 ....*....|....*....|....
gi 356535232 409 nLAIIYKQQGNYVDAISCYNEVLR 432
Cdd:COG4785  201 -WATAYLLQGDTEEARELFKLALA 223

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

63-197

1.43e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 82.93 E-value: 1.43e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:COG4783   83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

150-299

5.01e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 82.32 E-value: 5.01e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 150 LAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 229
Cdd:COG5010    4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 230 QPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRP 299
Cdd:COG5010   84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

277-368

5.84e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 79.83 E-value: 5.84e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 277 VYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAIlHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAI 356
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 356535232 357 QCYNQCLTLQPN 368
Cdd:COG3063   80 AYLERALELDPS 91

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

175-266

8.38e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 79.44 E-value: 8.38e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 175 AYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYScYLEALRIQPTFAIAWSNLAGLFMESGDFNRAL 254
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 356535232 255 QYYKEAVKLKPS 266
Cdd:COG3063   80 AYLERALELDPS 91

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

190-333

1.32e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 80.77 E-value: 1.32e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 190 RQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPD 269
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356535232 270 AYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP 333
Cdd:COG5010   90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

224-367

1.46e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 80.77 E-value: 1.46e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 224 LEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGM 303
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356535232 304 AYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQP 367
Cdd:COG5010   90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

91-262

4.91e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.11 E-value: 4.91e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  91 YERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWS 170
Cdd:COG4785   66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 171 NLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLgnlmkaqglvqeayscYLEALRIQPTFAIAW--SNLAGLFMESG 248
Cdd:COG4785  146 NRGIALYYLGRYELAIADLEKALELDPNDPERALWL----------------YLAERKLDPEKALALllEDWATAYLLQG 209

                        170
                 ....*....|....
gi 356535232 249 DFNRALQYYKEAVK 262
Cdd:COG4785  210 DTEEARELFKLALA 223

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

141-231

9.64e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 76.36 E-value: 9.64e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 141 AWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQcCRQALAINPLMVDAHSNLGNLMKAQGLVQEAY 220
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|.
gi 356535232 221 SCYLEALRIQP 231
Cdd:COG3063   80 AYLERALELDP 90

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

311-397

1.23e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.98 E-value: 1.23e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 311 IYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQcYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAA 390
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                 ....*..
gi 356535232 391 QYYKATL 397
Cdd:COG3063   80 AYLERAL 86

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

119-231

1.27e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 78.08 E-value: 1.27e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 119 AKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPL 198
Cdd:COG5010   41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120

                         90       100       110
                 ....*....|....*....|....*....|...
gi 356535232 199 MVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 231
Cdd:COG5010  121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

135-265

1.84e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 77.69 E-value: 1.84e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 135 YGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQG 214
Cdd:COG5010   23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 356535232 215 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKP 265
Cdd:COG5010  103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

249-398

2.10e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 77.31 E-value: 2.10e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 249 DFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQA 328
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 329 VACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLN 398
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

201-363

2.64e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 79.19 E-value: 2.64e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 201 DAHSNLGNLMKAQGLVQEAYSCYLEALRiQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKA 280
Cdd:COG4785   41 LADLALALAAAALAAAALAAERIDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 281 LGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDV----------- 349
Cdd:COG4785  120 LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLdpekalallle 199

                        170       180
                 ....*....|....*....|...
gi 356535232 350 ---------GRVEEAIQCYNQCL 363
Cdd:COG4785  200 dwatayllqGDTEEARELFKLAL 222

Spy

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

65-196

9.96e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.96 E-value: 9.96e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  65 DVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKE 144
Cdd:COG3914  113 EALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQD 192

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 356535232 145 KGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAIN 196
Cdd:COG3914  193 LGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

407-512

1.11e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 77.26 E-value: 1.11e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 407 YNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSG 486
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155

                         90       100
                 ....*....|....*....|....*.
gi 356535232 487 HVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:COG4785  156 RYELAIADLEKALELDPNDPERALWL 181

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

294-437

1.24e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 75.38 E-value: 1.24e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 294 ALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQAL 373
Cdd:COG5010   12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356535232 374 TNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLA 437
Cdd:COG5010   92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

226-508

1.86e-15

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 1.86e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  226 ALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPS------------------------FPDAYLN-------- 273
Cdd:TIGR02917  48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPknqvlpllarayllqgkfqqvldeLPGKTLLddegaael 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  274 ---LGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVG 350
Cdd:TIGR02917 128 lalRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  351 RVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAA----------------AQYYKATL------------NVTTG 402
Cdd:TIGR02917 208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnsplAHYLKALVdfqkknyedareTLQDA 287

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  403 LSAPYNNL------AIIYKQQGNYVDAISCYNEVLRIDP--------LAADGLVNrgntykeiGRVSDAIQDYIRAIVVR 468
Cdd:TIGR02917 288 LKSAPEYLpalllaGASEYQLGNLEQAYQYLNQILKYAPnshqarrlLASIQLRL--------GRVDEAIATLSPALGLD 359

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 356535232  469 PTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEA 508
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

51-198

2.39e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 74.61 E-value: 2.39e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  51 LLPLRGHDSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPH 130
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 356535232 131 FAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPL 198
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

332-499

2.63e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.11 E-value: 2.63e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 332 DPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQAltnlgniymewnmvaaaaqyykatlnvttglsapYNNLA 411
Cdd:COG4785   69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA----------------------------------YNNRG 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 412 IIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANL------------- 478
Cdd:COG4785  115 LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaerkldpekal 194

                        170       180
                 ....*....|....*....|....*...
gi 356535232 479 -------ASAYKDSGHVEAAVKSYKQAL 499
Cdd:COG4785  195 allledwATAYLLQGDTEEARELFKLAL 222

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

107-197

5.32e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.35 E-value: 5.32e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 107 VYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRyYLIAIELRPNFADAWSNLASAYMRKGRLTEAA 186
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|.
gi 356535232 187 QCCRQALAINP 197
Cdd:COG3063   80 AYLERALELDP 90

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

387-503

5.59e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 73.46 E-value: 5.59e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 387 AAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIV 466
Cdd:COG5010   37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 356535232 467 VRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRP 503
Cdd:COG5010  117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

401-512

7.46e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 7.46e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 401 TGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLAS 480
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 356535232 481 AYKDSGHVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

321-476

1.19e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.58 E-value: 1.19e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 321 AILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMewnmvaaaaqyykatlnvt 400
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL------------------- 62

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 401 tglsapynnlaiiykQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHA 476
Cdd:COG4235   63 ---------------AAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

82-197

3.41e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 3.41e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  82 QALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIEL 161
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 356535232 162 RPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

354-508

1.57e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.49 E-value: 1.57e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 354 EAIQCYNQCLTLQPNHPQALTNLGNIYMewnmvaaaaqyykatlnvttglsapynnlaiiykQQGNYVDAISCYNEVLRI 433
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYL----------------------------------RLGRYDEALAAYEKALRL 46

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232 434 DPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEA 508
Cdd:COG4235   47 DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

413-504

2.26e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 66.73 E-value: 2.26e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 413 IYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQdYIRAIVVRPTMAEAHANLASAYKDSGHVEAAV 492
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 356535232 493 KSYKQALILRPD 504
Cdd:COG3063   80 AYLERALELDPS 91

type_IV_pilW

TIGR02521

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...

304-506

2.97e-13

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 70.44 E-value: 2.97e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  304 AYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIY--- 380
Cdd:TIGR02521  33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLcqq 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  381 ------MEWNMVAAAAQYYKATlnvttglSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 454
Cdd:TIGR02521 113 gkyeqaMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  455 SDA---IQDYIRAIVVRPTMAEAHANLASAYKDsghvEAAVKSYkqALILRPDFP 506
Cdd:TIGR02521 186 KDArayLERYQQTYNQTAESLWLGIRIARALGD----VAAAQRY--GAQLQKLFP 234

type_IV_pilW

TIGR02521

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...

166-345

1.57e-12

Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.13 E-value: 1.57e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  246 ESGDFNRALQYYKEAVK--LKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQldmail 323
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ------ 184

                         170       180
                  ....*....|....*....|..
gi 356535232  324 hYKQAVAcdprFLEAYNNLGNA 345
Cdd:TIGR02521 185 -YKDARA----YLERYQQTYNQ 201

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

55-196

5.24e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 5.24e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  55 RGHDSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAEC 134
Cdd:COG2956  135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 356535232 135 YGNMANAWKEKGNIDLAIRYYLIAIELRPNfADAWSNLASAYMRKGRLTEAAQCCRQALAIN 196
Cdd:COG2956  215 LPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

70-473

3.41e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 67.32 E-value: 3.41e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   70 LAHQMYKTGNYKQALEHSNTVYE--RNPLRTDNLlllGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGN 147
Cdd:TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEckPDPVYYSNR---AACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  148 IDLAIrYYLIAIELRPNFADAwsnlASAYMRKGRLTEAAQC-CRQALAINPLMVDAHSNLGNLMKA-------------- 212
Cdd:TIGR00990 210 YADAL-LDLTASCIIDGFRNE----QSAQAVERLLKKFAESkAKEILETKPENLPSVTFVGNYLQSfrpkprpagledsn 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  213 -------QGLVQ---------------EAYSCYLEAL---RIQPTFAIAWsNLAGLF-MESGDFNRALQYYKEAVKLKPS 266
Cdd:TIGR00990 285 eldeetgNGQLQlglkspeskadesyeEAARAFEKALdlgKLGEKEAIAL-NLRGTFkCLKGKHLEALADLSKSIELDPR 363

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  267 FPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNAL 346
Cdd:TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  347 KDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLA-------IIYKQQGN 419
Cdd:TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLplinkalALFQWKQD 523

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 356535232  420 YVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAE 473
Cdd:TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

18-328

5.42e-11

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 66.55 E-value: 5.42e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   18 QPQLPGSAdtsrqqFTADRVEPFSVKQEPASLtllplrgHDSSEVDEDVYLSLAHQmyktgnYKQALE-HSNTVYERNPL 96
Cdd:TIGR00990 255 PENLPSVT------FVGNYLQSFRPKPRPAGL-------EDSNELDEETGNGQLQL------GLKSPEsKADESYEEAAR 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   97 RTDNLLLLG------AVYYQLHD-FDMCVAKNEEAL-------RIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELR 162
Cdd:TIGR00990 316 AFEKALDLGklgekeAIALNLRGtFKCLKGKHLEALadlsksiELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  163 PNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 242
Cdd:TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  243 LFMESGDFNRALQYYKEAVKLKPSFPDAYLN-LGNVYKALGMPQ------EAIACYQHALQTRPNYGMAYGNLASIYYEQ 315
Cdd:TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNvLPLINKALALFQwkqdfiEAENLCEKALIIDPECDIAVATMAQLLLQQ 555

                         330
                  ....*....|...
gi 356535232  316 GQLDMAILHYKQA 328
Cdd:TIGR00990 556 GDVDEALKLFERA 568

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

63-168

6.13e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 6.13e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG4235   16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95

                         90       100
                 ....*....|....*....|....*.
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNFADA 168
Cdd:COG4235   96 FQQGDYAEAIAAWQKLLALLPADAPA 121

Ycf37

COG5714

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...

271-372

1.69e-10

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I

Pssm-ID: 444424 [Multi-domain] Cd Length: 176 Bit Score: 61.11 E-value: 1.69e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 271 YLNLGNVYKALGMPQEAIACYQHALQTR-----PNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNA 345
Cdd:COG5714   55 YYELGSIYLDKKLYVQAIALFQKALKAAeeeepENLALIYNALGFAYFAQEQYDLAIRQYKEALKLKPDYVTALNNLGHA 134

                         90       100
                 ....*....|....*....|....*..
gi 356535232 346 LKDVGRVEEAIQCYNQCLTLQPNHPQA 372
Cdd:COG5714  135 YEKKKLTAQALETYEEALKLDPNNKTA 161

TPR_12

Tetratricopeptide repeat;

270-330

2.04e-10

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 57.78 E-value: 2.04e-10

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232  270 AYLNLGNVYKALGMPQEAIACYQHALQ--------TRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVA 330
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

379-469

2.09e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 2.09e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 379 IYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAIScYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAI 458
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|.
gi 356535232 459 QDYIRAIVVRP 469
Cdd:COG3063   80 AYLERALELDP 90

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

63-165

2.52e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 2.52e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  63 DEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAW 142
Cdd:COG4783   37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116

                         90       100
                 ....*....|....*....|...
gi 356535232 143 KEKGNIDLAIRYYLIAIELRPNF 165
Cdd:COG4783  117 RALGRPDEAIAALEKALELDPDD 139

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

386-508

2.68e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.47 E-value: 2.68e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 386 VAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVSDA 457
Cdd:COG4785   13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridralaLPDLAQLYYERGVAYDSLGDYDLA 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 356535232 458 IQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEA 508
Cdd:COG4785   93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

244-508

3.02e-10

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.33 E-value: 3.02e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  244 FMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAI- 322
Cdd:TIGR02917  32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLd 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  323 LHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTG 402
Cdd:TIGR02917 112 ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  403 LSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQ--DYIRAIVvrPTMAEAHANLAS 480
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKhaDALLKKA--PNSPLAHYLKAL 269

                         250       260
                  ....*....|....*....|....*...
gi 356535232  481 AYKDSGHVEAAVKSYKQALILRPDFPEA 508
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPA 297

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

75-164

3.27e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 3.27e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  75 YKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAkNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRY 154
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                         90
                 ....*....|
gi 356535232 155 YLIAIELRPN 164
Cdd:COG3063   82 LERALELDPS 91

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

244-372

4.12e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.00 E-value: 4.12e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 244 FMESGDFNRALQYYKEAVKLKPS---FPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNygmaygnlasiyyeqgqldm 320
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD-------------------- 62

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 356535232 321 ailhykqavacDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQA 372
Cdd:COG1729   63 -----------SPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

211-365

4.34e-09

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 59.18 E-value: 4.34e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 211 KAQGLVQ-----EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPS-FPDAYLNLGNvykaLGMP 284
Cdd:cd24142    6 KAEELLDqgnfeLALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQ----LSGG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 285 QEAIACYQHALQ----------------------TRPNYGMAYGNLASIYyeQGQLDM----------AIlhyKQAVACD 332
Cdd:cd24142   82 EEALQYYEKGIEileeelqalqaasaeaeeeaeeLKRKLSSALCALAEIY--MTDLCDepdaeqrceeLI---TKALELD 156

                        170       180       190
                 ....*....|....*....|....*....|...
gi 356535232 333 PRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTL 365
Cdd:cd24142  157 PTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

244-367

1.41e-08

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 56.79 E-value: 1.41e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 244 FMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNvykalgmpqeaiacyqhalqtrpnygmaygnlasIYYEQGQLDMAIL 323
Cdd:NF033920 166 LEQTGQPEAALAAYQTATKRWPDSWLAYFGLGN----------------------------------AAYAAGDYAAAAA 211

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 356535232 324 HYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQP 367
Cdd:NF033920 212 AFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255

TPR_11

TPR repeat;

243-282

1.53e-08

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 51.32 E-value: 1.53e-08

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  243 LFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALG 282
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

PRK11447

cellulose synthase subunit BcsC; Provisional

282-446

1.80e-08

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 58.56 E-value: 1.80e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  282 GMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP---------------RFLEAYNNLGNAL 346
Cdd:PRK11447  283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPhssnrdkwesllkvnRYWLLIQQGDAAL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  347 KdVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQG-----NYV 421
Cdd:PRK11447  363 K-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSpekalAFI 441

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 356535232  422 DAISC-----YNEVLR---IDPLA--ADGLVNRGN 446
Cdd:PRK11447  442 ASLSAsqrrsIDDIERslqNDRLAqqAEALENQGK 476

Ycf37

COG5714

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...

249-300

1.94e-08

Pssm-ID: 444424 [Multi-domain] Cd Length: 176 Bit Score: 54.95 E-value: 1.94e-08

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 356535232 249 DFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPN 300
Cdd:COG5714  106 QYDLAIRQYKEALKLKPDYVTALNNLGHAYEKKKLTAQALETYEEALKLDPN 157

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

139-296

1.98e-08

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 56.87 E-value: 1.98e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 139 ANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLmvDAHS---NLGNLM----- 210
Cdd:cd24142    7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGYEkylYLGQLSggeea 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 211 -------------KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM---------ESgdfnRALQYYKEAVKLKPSFP 268
Cdd:cd24142   85 lqyyekgieileeELQALQAASAEAEEEAEELKRKLSSALCALAEIYMtdlcdepdaEQ----RCEELITKALELDPTNP 160

                        170       180
                 ....*....|....*....|....*...
gi 356535232 269 DAYLNLGNVYKALGMPQEAIACYQHALQ 296
Cdd:cd24142  161 EALQTLASLRISQQRPDEAKEALRRSLE 188

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

61-296

2.51e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.84 E-value: 2.51e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  61 EVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFdmcvaknEEALRIEPHFAEcygnmAN 140
Cdd:COG3071   82 EAELAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDW-------EELLELLPALRK-----HK 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 141 AWKEKGNIDLAIRYYLIAIELRPNFADA----WSNL--------------ASAYMRKGRLTEAAQCCRQALAI--NPLMV 200
Cdd:COG3071  150 ALSAEEAQALERRAYLGLLRQAARDAEAlkalWKALpraerrdpelaaayARALIALGDHDEAERLLREALKRqwDPRLV 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 201 DAhsnLGNLMKAQGLVQEAYscyLE-ALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSfPDAYLNLGNVYK 279
Cdd:COG3071  230 RL---YGRLQGGDPAKQLKR---AEkWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLE 302

                        250
                 ....*....|....*..
gi 356535232 280 ALGMPQEAIACYQHALQ 296
Cdd:COG3071  303 QLGDPEEAAEHYRKALA 319

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

213-300

2.82e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 2.82e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 213 QGLVQEAYSCYLEALRIQPTFAI---AWSNLAGLFMESGDFNRALQYYKEAVKLKPS---FPDAYLNLGNVYKALGMPQE 286
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85

                         90
                 ....*....|....
gi 356535232 287 AIACYQHALQTRPN 300
Cdd:COG1729   86 ARATLEELIKKYPD 99

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

431-512

5.42e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 5.42e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 431 LRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATC 510
Cdd:COG5010   47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126


                 ..
gi 356535232 511 NL 512
Cdd:COG5010  127 NL 128

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

309-516

6.01e-08

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 6.01e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  309 ASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAA 388
Cdd:TIGR02917  29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  389 A-AQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVV 467
Cdd:TIGR02917 109 VlDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 356535232  468 RPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNLLHTL 516
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATIL 237

PRK11447

cellulose synthase subunit BcsC; Provisional

144-511

7.67e-08

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 56.63 E-value: 7.67e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  144 EKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAInplmvDAHSNlgNLMKAQGLVQEAyscy 223
Cdd:PRK11447  281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSS--NRDKWESLLKVN---- 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  224 lealriQPTFAIAWSNLAglfMESGDFNRALQYYKEAVKLKPSfpDAY--LNLGNVYKALGMPQEAIACYQHALQTRPNY 301
Cdd:PRK11447  350 ------RYWLLIQQGDAA---LKANNLAQAERLYQQARQVDNT--DSYavLGLGDVAMARKDYAAAERYYQQALRMDPGN 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  302 GMAYGNLASIYYEQG--------------------------QLDM----------------AILHYKQAVACDPRFLEAY 339
Cdd:PRK11447  419 TNAVRGLANLYRQQSpekalafiaslsasqrrsiddierslQNDRlaqqaealenqgkwaqAAELQRQRLALDPGSVWLT 498

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  340 NNLGNALKDVGRVEEAIQCYNQCLTLQPNHP-----------------QALTNLGNI-YMEW--NMVAAAAQYY-KATLN 398
Cdd:PRK11447  499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPeqvyayglylsgsdrdrAALAHLNTLpRAQWnsNIQELAQRLQsDQVLE 578

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  399 VTTGLSAPYNNLAII--YKQQGNYVdaiscynevlRIDPLAADGLVNRGNTykeigrvSDAIQDYIRAIVVRPTMAEAHA 476
Cdd:PRK11447  579 TANRLRDSGKEAEAEalLRQQPPST----------RIDLTLADWAQQRGDY-------AAARAAYQRVLTREPGNADARL 641

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 356535232  477 NLASAYKDSGHVEAAvksyKQALILRPDFPEATCN 511
Cdd:PRK11447  642 GLIEVDIAQGDLAAA----RAQLAKLPATANDSLN 672

TPR_11

TPR repeat;

311-350

1.18e-07

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 48.62 E-value: 1.18e-07

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  311 IYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVG 350
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

FxSxx_TPR

NF040586

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...

176-491

1.79e-07

Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 1.79e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 176 YMRkGRLTEAAQCCRQALAI--------NPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----------PTFAIAW 237
Cdd:NF040586 403 YLR-GDYESARDLAERALERwrerlgpdDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQrrvlglgedhPHTLMTA 481

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 238 SNLAGLFMESGDFNRALQYYKEAV-KLKPSFPDAYL-------NLGNVYKALGMPQEAIACYQHALQTR--------PNY 301
Cdd:NF040586 482 GGLGADLRALGRFREALELDEETLeRHRRVFGEDHPrtlraanNLAVSLRLLGDYREALELDREVLRRRrrvlgpdhPRT 561

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 302 GMAYGNLASIYYEQGQLDMAI------LHYKQAVACDPRF---LEAYNNLGNALKDVGRVEEAIQ----CYNQCLTLQ-P 367
Cdd:NF040586 562 LLSANNLARDLRELGRYAEALdlleeaLERYREVLGGPDHpdtLRAAKSLAVALRRAGRLEEALElaedTYERYRRRFgP 641

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 368 NHPQALT---NLGNIYMEWNMVAAAAQYYKATLNV---TTGLSAPY-----NNLAIIYKQQGNYVDAiscynevLRIDPL 436
Cdd:NF040586 642 DHPDTLAaalSLANDLRALGDADEARELAREVLDRyrrVLGEDHPFtlacrNNLAVLLRALGDPEEA-------RELAEA 714

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 437 AADGL---------------VNRGNTYKEIGRVSDAI-----QDYIRAIVVRPTMAEAH-------ANLASAYKDSGHVE 489
Cdd:NF040586 715 ALEGLrerlgpdhpytlaaaVNLANDLAALGDLDAALgeealERLRRLLGEDLRAGPDHpdtlacaANLALDLRATGRTE 794


                 ..
gi 356535232 490 AA 491
Cdd:NF040586 795 EA 796

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

416-508

2.19e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 2.19e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 416 QQGNYVDAISCYNEVLRIDP---LAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPT---MAEAHANLASAYKDSGHVE 489
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                         90
                 ....*....|....*....
gi 356535232 490 AAVKSYKQALILRPDFPEA 508
Cdd:COG1729   85 KARATLEELIKKYPDSEAA 103

TPR_hemY_coli

TIGR00540

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...

66-260

2.36e-07

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]

Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 54.22 E-value: 2.36e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   66 VYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAK-----------NEEALRIEpHFAeC 134
Cdd:TIGR00540 136 VLLTRAELLLDQRDYEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLlpalrkakalsPEEAARLE-QQA-Y 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  135 YGNMANA----------------WKEKGNIDLAIRY--YLIAIE--------LRPNFADAW-SNLASAY--MRKGRLTEA 185
Cdd:TIGR00540 214 IGLLDEAreedadalktwwkqlpRAERQEPELAVAAaeALIQLGdhdeaeklIEEALKKEWdPELLRLYgrLQPGDPSPL 293

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232  186 AQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYScYLEA-LRIQPTFAiAWSNLAGLFMESGDFNRALQYYKEA 260
Cdd:TIGR00540 294 IKRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQS-YLEAsLSLAPTEE-AHLELAQLFEQLGDTEAAAQHYRKS 367

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

146-368

3.34e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 53.38 E-value: 3.34e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 146 GNIDLAIRYYLIAIELRPNFADAwSNLASA--YMRKGRLTEAAQCCRQALAINP-------LMVDAHSNLGN-------- 208
Cdd:COG3071   64 GDYERRDEYLAQALELAPEAELA-VLLTRAelLLDQGQAEQALATLEALRAGAPrhpqvlrLLLQAYRQLGDweellell 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 209 --LMKAQGLVQEAYS-----CYLEALRIQPT----FAIAWSNL--------------AGLFMESGDFNRALQYYKEAVKL 263
Cdd:COG3071  143 paLRKHKALSAEEAQalerrAYLGLLRQAARdaeaLKALWKALpraerrdpelaaayARALIALGDHDEAERLLREALKR 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 264 KPSfpdayLNLGNVYKALGM--PQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRfLEAYNN 341
Cdd:COG3071  223 QWD-----PRLVRLYGRLQGgdPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAE 296

                        250       260
                 ....*....|....*....|....*..
gi 356535232 342 LGNALKDVGRVEEAIQCYNQCLTLQPN 368
Cdd:COG3071  297 LARLLEQLGDPEEAAEHYRKALALALG 323

TPR_1

Tetratricopeptide repeat;

268-301

4.80e-07

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 46.65 E-value: 4.80e-07

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNY 301
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

PRK02603

photosystem I assembly protein Ycf3; Provisional

248-353

5.34e-07

photosystem I assembly protein Ycf3; Provisional

Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 5.34e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 248 GDFNRALQYYKEAVKLKPSFPD-AYL--NLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYY-------EQGQ 317
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHkrgekaeEAGD 128

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 356535232 318 LDMAILHY-------KQAVACDP-RFLEAYnnlgNALKDVGRVE 353
Cdd:PRK02603 129 QDEAEALFdkaaeywKQAIRLAPnNYIEAQ----NWLKTTGRSN 168

TPR_1

Tetratricopeptide repeat;

337-369

7.17e-07

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 46.26 E-value: 7.17e-07

                          10        20        30
                  ....*....|....*....|....*....|...
gi 356535232  337 EAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNH 369
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

TPR_12

Tetratricopeptide repeat;

234-296

7.32e-07

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 7.32e-07

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 356535232  234 AIAWSNLAGLFMESGDFNRALQYYKEAVKL-----KPSFPD---AYLNLGNVYKALGMPQEAIACYQHALQ 296
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGRYEEALELLERALA 73

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

307-369

8.76e-07

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 51.86 E-value: 8.76e-07

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356535232 307 NLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNH 369
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

269-361

8.84e-07

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 51.86 E-value: 8.84e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 269 DAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP-RFLEAYNNLGNALk 347
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLS- 79

                         90
                 ....*....|....
gi 356535232 348 dVGrvEEAIQCYNQ 361
Cdd:cd24142   80 -GG--EEALQYYEK 90

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

268-509

1.12e-06

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.78 E-value: 1.12e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAV-------ACDPRFLEAYN 340
Cdd:TIGR02917  22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALslgypknQVLPLLARAYL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  341 NLGNALKDVGRVEEAiqcynqclTLQPNHPQA--LTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQG 418
Cdd:TIGR02917 102 LQGKFQQVLDELPGK--------TLLDDEGAAelLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  419 NYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQA 498
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253

                         250
                  ....*....|.
gi 356535232  499 LILRPDFPEAT 509
Cdd:TIGR02917 254 LKKAPNSPLAH 264

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

448-512

1.14e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.14e-06

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232 448 YKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKsYKQALILRPDFPEATCNL 512
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

337-369

1.72e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 45.13 E-value: 1.72e-06

                           10        20        30
                   ....*....|....*....|....*....|...
gi 356535232   337 EAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNH 369
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

PRK11788

tetratricopeptide repeat protein; Provisional

240-368

2.22e-06

tetratricopeptide repeat protein; Provisional

Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 50.96 E-value: 2.22e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 240 LAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNY-GMAYGNLASIYYEQGQL 318
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDE 265

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 356535232 319 DMAILHYKQAVACDPrFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPN 368
Cdd:PRK11788 266 AEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314

TPR_12

Tetratricopeptide repeat;

336-433

2.44e-06

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 2.44e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  336 LEAYNNLGNALKDVGRVEEAIQCYNQCLTLQ-----PNHPQALTNlgniymewnmvaaaaqyykatlnvttglsapYNNL 410
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPLTATT-------------------------------LLNL 51

                          90       100
                  ....*....|....*....|...
gi 356535232  411 AIIYKQQGNYVDAISCYNEVLRI 433
Cdd:pfam13424  52 GRLYLELGRYEEALELLERALAL 74

TPR_1

Tetratricopeptide repeat;

166-197

2.75e-06

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 2.75e-06

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

268-301

3.19e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.36 E-value: 3.19e-06

                           10        20        30
                   ....*....|....*....|....*....|....
gi 356535232   268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNY 301
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

233-507

3.39e-06

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 3.39e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  233 FAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSfPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIY 312
Cdd:TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  313 -----YEQGQLDMAIL---------------------------------------------HYKQAVACDPRF------L 336
Cdd:TIGR00990 205 dglgkYADALLDLTASciidgfrneqsaqaverllkkfaeskakeiletkpenlpsvtfvgNYLQSFRPKPRPagledsN 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  337 EAYNNLGNALKDVGR----------VEEAIQCYNQCLT---LQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGL 403
Cdd:TIGR00990 285 ELDEETGNGQLQLGLkspeskadesYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  404 SAPYNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLA-SAY 482
Cdd:TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGvTQY 444

                         330       340
                  ....*....|....*....|....*
gi 356535232  483 KDsGHVEAAVKSYKQALILRPDFPE 507
Cdd:TIGR00990 445 KE-GSIASSMATFRRCKKNFPEAPD 468

COG3899

Predicted ATPase [General function prediction only];

151-355

3.89e-06

Predicted ATPase [General function prediction only];

Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 51.01 E-value: 3.89e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  151 AIRYYLIAIEL------RPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLmkaqglvqeayscyl 224
Cdd:COG3899   724 ALRYLERALELlppdpeEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNP--------------- 788

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  225 ealriqPTFAIAWSNLAGLFMesGDFNRALQYYKEAVKLKPSFPD------AYLNLGNVYKALGMPQEAIACYQHALQTR 298
Cdd:COG3899   789 ------PASARAYANLGLLLL--GDYEEAYEFGELALALAERLGDrrlearALFNLGFILHWLGPLREALELLREALEAG 860

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232  299 PNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEA 355
Cdd:COG3899   861 LETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAE 917

TPR_11

TPR repeat;

343-382

3.97e-06

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 44.38 E-value: 3.97e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  343 GNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYME 382
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40

TPR_19

Tetratricopeptide repeat;

247-311

4.28e-06

Tetratricopeptide repeat;

Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 44.88 E-value: 4.28e-06

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  247 SGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASI 311
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65

COG4700

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

251-407

5.60e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.72 E-value: 5.60e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 251 NRALQYYKEAVKLKPSFpDAYLNLGNVYKALGMPQEAIACYQHALqTRP---NYGMAYGnLASIYYEQGQLDMAILHYKQ 327
Cdd:COG4700   73 GRELRELEKALEFADTV-QNRVRLADALLELGRYDEAIELYEEAL-TGIfadDPHILLG-LAQALFELGRYAEALETLEK 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 328 AVACDP--RFLEAYNNLGNALKDVGRVEEAIQCYnQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSA 405
Cdd:COG4700  150 LIAKNPdfKSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILDEAKHMPK 228


                 ..
gi 356535232 406 PY 407
Cdd:COG4700  229 HY 230

TPR_1

Tetratricopeptide repeat;

407-435

5.90e-06

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.56 E-value: 5.90e-06

                          10        20
                  ....*....|....*....|....*....
gi 356535232  407 YNNLAIIYKQQGNYVDAISCYNEVLRIDP 435
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

345-474

6.05e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 6.05e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 345 ALKDVGRVEEAIQCYNQCLTLQPNHPQAltnlgniymewnmvaAAAQYYkatlnvttglsapynnLAIIYKQQGNYVDAI 424
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLA---------------PDALYW----------------LGEAYYALGDYDEAA 50

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 356535232 425 SCYNEVLRIDP---LAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEA 474
Cdd:COG1729   51 EAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

166-197

7.71e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.59 E-value: 7.71e-06

                           10        20        30
                   ....*....|....*....|....*....|..
gi 356535232   166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

407-435

9.47e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 9.47e-06

                           10        20
                   ....*....|....*....|....*....
gi 356535232   407 YNNLAIIYKQQGNYVDAISCYNEVLRIDP 435
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

436-512

1.05e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.19 E-value: 1.05e-05

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232 436 LAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:COG2956    6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82

TPR_11

TPR repeat;

139-180

1.05e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 43.23 E-value: 1.05e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 356535232  139 ANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKG 180
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

TPR

COG0790

TPR repeat [General function prediction only];

206-394

1.18e-05

TPR repeat [General function prediction only];

Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 48.00 E-value: 1.18e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 206 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDFNRALQYYKEAVKLKpsFPDAYLNLGNVY-KA 280
Cdd:COG0790   35 AAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEWFEKAAEQG--DAEAQYNLGLMYeEG 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 281 LGMPQ---EAIACYQHALQTrpNYGMAYGNLASIYYE----QGQLDMAILHYKQAvaCDPRFLEAYNNLGNALKDvGR-- 351
Cdd:COG0790  113 LGVPQdyaKALEWYEKAAEQ--GDADAQYNLGLLYLNgegvPKDPAKAAEWYRKA--AEQGDADAQYNLGVLYEN-GRgv 187

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 356535232 352 ---VEEAIQCYNQCLTLqpNHPQALTNLGNIYMEWNMVA----AAAQYYK 394
Cdd:COG0790  188 pkdPAKALEWYRKAAEQ--GDADAQYNLGRLYLNGEGVEkdleKALRWLR 235

TPR_12

Tetratricopeptide repeat;

166-229

1.26e-05

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.30 E-value: 1.26e-05

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 356535232  166 ADAWSNLASAYMRKGRLTEAAQCCRQALAI--------NPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 229
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

166-197

1.59e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 42.51 E-value: 1.59e-05

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

245-381

1.61e-05

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.01 E-value: 1.61e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 245 MESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA-YGNLASI--------YYEQ 315
Cdd:cd24142   11 LDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLGQLsggeealqYYEK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 316 G----QLDMAILhyKQAVACDPRFLEAYNN-LGNAL--------------KDV-GRVEEAIQcynQCLTLQPNHPQALTN 375
Cdd:cd24142   91 GieilEEELQAL--QAASAEAEEEAEELKRkLSSALcalaeiymtdlcdePDAeQRCEELIT---KALELDPTNPEALQT 165


                 ....*.
gi 356535232 376 LGNIYM 381
Cdd:cd24142  166 LASLRI 171

TPR_11

TPR repeat;

445-486

2.01e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.46 E-value: 2.01e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 356535232  445 GNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSG 486
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

175-270

2.22e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 2.22e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 175 AYMRKGRLTEAAQCCRQALAINP---LMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT---FAIAWSNLAGLFMESG 248
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                         90       100
                 ....*....|....*....|..
gi 356535232 249 DFNRALQYYKEAVKLKPSFPDA 270
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAA 103

TPR_MalT

pfam17874

MalT-like TPR region; This entry contains a series of TPR repeats.

173-331

2.54e-05

MalT-like TPR region; This entry contains a series of TPR repeats.

Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 47.69 E-value: 2.54e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  173 ASAYMRKGRLTEAAQCCRQALAINP-----LMVDAHSNLGNLMKAQGLVQEAYSCYLE----ALRIQPTFAIAWS--NLA 241
Cdd:pfam17874   8 AQLAISKGDAERALELAEQALALLPeddllARGLATFVLGEAYLCLGDLDAALQAMREaealARRADSPHVTLWAllQQG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  242 GLFMESGDFNRALQYYKEAVKLKPsfpdaylnlgnvykalgmpqeaiacyQHALQTRPNYGMAYGNLASIYYEQGQLDMA 321
Cdd:pfam17874  88 EILRAQGRLHQALETYQQALQLAR--------------------------DHGLQHLPLHGFLLVGLADLLYEWNDLEEA 141

                         170
                  ....*....|
gi 356535232  322 ILHYKQAVAC 331
Cdd:pfam17874 142 EQHAQQGIQL 151

TPR_8

pfam13181

Tetratricopeptide repeat;

336-368

2.59e-05

Tetratricopeptide repeat;

Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 42.00 E-value: 2.59e-05

                          10        20        30
                  ....*....|....*....|....*....|...
gi 356535232  336 LEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPN 368
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33

TPR_11

TPR repeat;

175-214

2.80e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.07 E-value: 2.80e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  175 AYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQG 214
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

SNAP

pfam14938

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...

181-432

3.02e-05

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.

Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 46.79 E-value: 3.02e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  181 RLTEAAQCCRQAlainplmvdahsnlGNLMKAQGLVQEAYSCYLEAlriqptfaiawsnlAGLFMESGDFNRALQYYKEA 260
Cdd:pfam14938  22 KYEEAADLYIQA--------------ANAYKLAKNWEEAGEAFEKA--------------AECQLKLGSKDEAANAYVEA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  261 vklkpsfpdaylnlGNVYKAlGMPQEAIACYQHALQtrpnygmaygnlasIYYEQGQLDMAILHYKQaVAcdprflEAYN 340
Cdd:pfam14938  74 --------------AKCYKK-VDPEEAVRALEKAIE--------------IYTEMGRFRRAAKHKKE-IA------ELYE 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  341 NlgnalkDVGRVEEAIQCYNQcltlqpnhpqaltnlgniymewnmvaaAAQYYKatlnvTTGLSAPYNNL----AIIYKQ 416
Cdd:pfam14938 118 Q------ELGDLEKAIEAYEQ---------------------------AADWYE-----GEGASALANKCylkvADLSAE 159

                         250
                  ....*....|....*.
gi 356535232  417 QGNYVDAISCYNEVLR 432
Cdd:pfam14938 160 LEDYPKAIEIYEKVAK 175

TPR_11

TPR repeat;

275-316

4.49e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.30 E-value: 4.49e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 356535232  275 GNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQG 316
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

TPR_12

Tetratricopeptide repeat;

202-266

4.61e-05

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 4.61e-05

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356535232  202 AHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPS 266
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77

SNAP

cd15832

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...

178-435

5.00e-05

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.

Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 46.42 E-value: 5.00e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 178 RKGRLTEAAQCCRQAlainplmvdahsnlGNLMKAQGLVQEAYSCYLEAlriqptfaiawsnlAGLFMESGDFNRALQYY 257
Cdd:cd15832   24 GGSKYEEAAELYEKA--------------ANAFKLAKNWEEAGDAFLKA--------------AECQLKLDSKHDAANAY 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 258 KEAvklkpsfpdaylnlGNVYKALGmPQEAIACYQHA---LQTRPNYGMA---YGNLASIYYEQGQ-LDMAILHYKQAva 330
Cdd:cd15832   76 VEA--------------AKCYKKVD-PQEAVNCLEKAieiYTEMGRFRQAakhLKEIAELYENELGdLDKAIEAYEQA-- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 331 cdprfLEAYNNlgnalkdvgrvEEAIQCYNQCL-------TLQPNHPQALT---NLGNIYMEWNMVAAAAQYYkatlnvt 400
Cdd:cd15832  139 -----ADYYEG-----------EGANSLANKCYlkvadlaAQLEDYDKAIEiyeQVARSSLENNLLKYSAKDY------- 195

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 356535232 401 tglsapYNNLAIIYKQQGNYVDAISCYNEVLRIDP 435
Cdd:cd15832  196 ------FLKAGLCHLAAGDVVAAQRALEKYAELDP 224

TPR_12

Tetratricopeptide repeat;

407-465

5.50e-05

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 5.50e-05

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232  407 YNNLAIIYKQQGNYVDAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVSDAIQDYIRAI 465
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERAL 72

TPR_1

Tetratricopeptide repeat;

234-267

6.04e-05

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 6.04e-05

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  234 AIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSF 267
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

TPR_1

Tetratricopeptide repeat;

304-335

7.07e-05

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 7.07e-05

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  304 AYGNLASIYYEQGQLDMAILHYKQAVACDPRF 335
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

TPR_MalT

pfam17874

MalT-like TPR region; This entry contains a series of TPR repeats.

241-392

7.56e-05

MalT-like TPR region; This entry contains a series of TPR repeats.

Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 46.15 E-value: 7.56e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  241 AGLFMESGDFNRALQYYKEAVKLKPS--FP----------DAYLNLGNVYKALGMPQEAIacyQHALqtRPNYG----MA 304
Cdd:pfam17874   8 AQLAISKGDAERALELAEQALALLPEddLLarglatfvlgEAYLCLGDLDAALQAMREAE---ALAR--RADSPhvtlWA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  305 YGNLASIYYEQGQLDMAILHYKQAVACDPRfleaynnlgnalkdvgrveeaiqcynQCLTLQPNHPQALTNLGNIYMEWN 384
Cdd:pfam17874  83 LLQQGEILRAQGRLHQALETYQQALQLARD--------------------------HGLQHLPLHGFLLVGLADLLYEWN 136


                  ....*...
gi 356535232  385 MVAAAAQY 392
Cdd:pfam17874 137 DLEEAEQH 144

TPR_11

TPR repeat;

413-452

7.56e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 7.56e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  413 IYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIG 452
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

344-426

8.57e-05

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 45.23 E-value: 8.57e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 344 NALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYV-- 421
Cdd:NF033920 164 QDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAqa 243


                 ....*.
gi 356535232 422 -DAISC 426
Cdd:NF033920 244 rAAAEC 249

C39_PA2778_fam

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...

166-265

9.21e-05

Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 45.23 E-value: 9.21e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245
Cdd:NF033920 156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                         90       100
                 ....*....|....*....|
gi 356535232 246 ESGDFNRALQYYKEAVKLKP 265
Cdd:NF033920 236 AQGCTAQARAAAECALALAP 255

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

132-165

9.79e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.12 E-value: 9.79e-05

                           10        20        30
                   ....*....|....*....|....*....|....
gi 356535232   132 AECYGNMANAWKEKGNIDLAIRYYLIAIELRPNF 165
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

TPR_16

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...

137-197

9.92e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.

Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 41.17 E-value: 9.92e-05

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356535232  137 NMANAWKEKGNIDLAIRYYLIAIELR---PNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

337-368

1.30e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 1.30e-04

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  337 EAYNNLGNALKDVGRVEEAIQCYNQCLTLQPN 368
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

268-300

1.52e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 1.52e-04

                          10        20        30
                  ....*....|....*....|....*....|...
gi 356535232  268 PDAYLNLGNVYKALGMPQEAIACYQHALQTRPN 300
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

407-435

1.67e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 1.67e-04

                          10        20
                  ....*....|....*....|....*....
gi 356535232  407 YNNLAIIYKQQGNYVDAISCYNEVLRIDP 435
Cdd:pfam07719   4 LYNLGLAYYKLGDYEEALEAYEKALELDP 32

TPR_17

Tetratricopeptide repeat;

324-357

1.95e-04

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 39.45 E-value: 1.95e-04

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  324 HYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQ 357
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

341-533

2.19e-04

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 44.54 E-value: 2.19e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 341 NLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYK--ATLNvTTGLSAPYNNLAIIykQQG 418
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLraIELD-PDGGYEKYLYLGQL--SGG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 419 NyvDAISCYN---EVLR--IDPLAADGLVNRGNTYKEIGRVSDAI---------------------QDYI-RAIVVRPTM 471
Cdd:cd24142   82 E--EALQYYEkgiEILEeeLQALQAASAEAEEEAEELKRKLSSALcalaeiymtdlcdepdaeqrcEELItKALELDPTN 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232 472 AEAHANLASAYKDSGHVEAAVKSYKQAL-ILRPDFPEATCNLLHTLQCVCCWEDRD------KMFKEVE 533
Cdd:cd24142  160 PEALQTLASLRISQQRPDEAKEALRRSLeLWKDLKEEDEEEAEEDEAEEEDVPSYEfrislaKLLIELE 228

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

144-228

2.23e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.52 E-value: 2.23e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 144 EKGNIDLAIRYYLIAIELRPN---FADAWSNLASAYMRKGRLTEAAQCCRQALAINP---LMVDAHSNLGNLMKAQGLVQ 217
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYD 84

                         90
                 ....*....|.
gi 356535232 218 EAYSCYLEALR 228
Cdd:COG1729   85 KARATLEELIK 95

TPR

COG0790

TPR repeat [General function prediction only];

147-294

2.49e-04

TPR repeat [General function prediction only];

Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 43.76 E-value: 2.49e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 147 NIDLAIRYYLIAIELrpNFADAWSNLASAYmRKGR-----LTEAAQCCRQALAINplMVDAHSNLGNL-MKAQGLVQ--- 217
Cdd:COG0790   82 DYEKALEWFEKAAEQ--GDAEAQYNLGLMY-EEGLgvpqdYAKALEWYEKAAEQG--DADAQYNLGLLyLNGEGVPKdpa 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 218 EAYSCYLEALRIQptFAIAWSNLAGLFME----SGDFNRALQYYKEAVKLKpsFPDAYLNLGNVY-KALGMPQ---EAIA 289
Cdd:COG0790  157 KAAEWYRKAAEQG--DADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQG--DADAQYNLGRLYlNGEGVEKdleKALR 232


                 ....*
gi 356535232 290 CYQHA 294
Cdd:COG0790  233 WLRKA 237

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

304-335

2.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 2.59e-04

                           10        20        30
                   ....*....|....*....|....*....|..
gi 356535232   304 AYGNLASIYYEQGQLDMAILHYKQAVACDPRF 335
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

234-267

3.44e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 3.44e-04

                           10        20        30
                   ....*....|....*....|....*....|....
gi 356535232   234 AIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSF 267
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

NlpI

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

407-512

3.93e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 3.93e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 407 YNNLAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAI------VVRPTMAEAHANLAS 480
Cdd:COG4785    2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGV 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 356535232 481 AYKDSGHVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:COG4785   82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNR 113

TPR_1

Tetratricopeptide repeat;

132-165

4.35e-04

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 4.35e-04

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  132 AECYGNMANAWKEKGNIDLAIRYYLIAIELRPNF 165
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

73-179

4.61e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 4.61e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  73 QMYKTGNYKQALEHSNTVYERNP---LRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIEP---HFAECYGNMANAWKEKG 146
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELG 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 356535232 147 NIDLAIRYYLIAIELRPNFADAwsNLASAYMRK 179
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAA--KEARARLAR 112

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

149-203

4.74e-04

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 43.62 E-value: 4.74e-04

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 356535232 149 DLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAH 203
Cdd:PLN03088  19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

TPR_16

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...

239-301

4.82e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.

Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 4.82e-04

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232  239 NLAGLFMESGDFNRALQYYKEAVKLKPSFPD---AYLNLGNVYKALGMPQEAIACYQHALQTRPNY 301
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67

ycf3

CHL00033

photosystem I assembly protein Ycf3

210-353

5.06e-04

photosystem I assembly protein Ycf3

Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.92 E-value: 5.06e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 210 MKAQ--GLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMp 284
Cdd:CHL00033  43 MSAQseGEYAEALQNYYEAMRLEIdpyDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE- 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232 285 qEAIacyqhalqtrpnygmaygnlasiyyEQGQL-------DMAILHYKQAVACDP-RFLEAYnnlgNALKDVGRVE 353
Cdd:CHL00033 122 -QAI-------------------------EQGDSeiaeawfDQAAEYWKQAIALAPgNYIEAQ----NWLKITGRFE 168

TPR_7

pfam13176

Tetratricopeptide repeat;

270-298

5.13e-04

Tetratricopeptide repeat;

Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 38.29 E-value: 5.13e-04

                          10        20
                  ....*....|....*....|....*....
gi 356535232  270 AYLNLGNVYKALGMPQEAIACYQHALQTR 298
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29

TPR_8

pfam13181

Tetratricopeptide repeat;

166-197

5.66e-04

Tetratricopeptide repeat;

Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.15 E-value: 5.66e-04

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  166 ADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32

TPR_17

Tetratricopeptide repeat;

256-289

5.86e-04

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 38.29 E-value: 5.86e-04

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  256 YYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIA 289
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

439-504

5.99e-04

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 5.99e-04

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232 439 DGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRPD 504
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66

tol_pal_ybgF

TIGR02795

tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...

241-330

7.05e-04

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 40.34 E-value: 7.05e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  241 AGLFMESGDFNRALQYYKEAVKLKPSF---PDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNL---ASIYYE 314
Cdd:TIGR02795   7 ALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALlklGMSLQE 86

                          90
                  ....*....|....*.
gi 356535232  315 QGQLDMAILHYKQAVA 330
Cdd:TIGR02795  87 LGDKEKAKATLQQVIK 102

PRK11788

tetratricopeptide repeat protein; Provisional

172-300

7.08e-04

tetratricopeptide repeat protein; Provisional

Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 7.08e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 172 LASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAiawSNLAGLFMES---- 247
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECyqal 262

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 356535232 248 GDFNRALQYYKEAVKLKPSfPDAYLNLGNVYKALGMPQEAIACYQHALQTRPN 300
Cdd:PRK11788 263 GDEAEGLEFLRRALEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314

TPR_8

pfam13181

Tetratricopeptide repeat;

269-300

8.22e-04

Tetratricopeptide repeat;

Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.76 E-value: 8.22e-04

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  269 DAYLNLGNVYKALGMPQEAIACYQHALQTRPN 300
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33

Mgr3-like

cd24145

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...

137-263

9.57e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.

Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 42.34 E-value: 9.57e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 137 NMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASA-YMRkgrlTEAAqcCRQALAINPLMVDAHSNLGNLMKA--Q 213
Cdd:cd24145  152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLvLMN----NEAA--ELALHALRKPLSSTLIEASRLPQKsrD 225

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356535232 214 GLVQEAYSCYLEAL-------------RIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKL 263
Cdd:cd24145  226 QLLEAALKWAQKALdvaksikpkdrdpECDQACALALYNLGVIAEMLGNLDEARKLYKEAISL 288

TPR_16

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...

307-370

1.07e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.

Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 1.07e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232  307 NLASIYYEQGQLDMAILHYKQAVA---CDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHP 370
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68

TPR_1

Tetratricopeptide repeat;

472-505

1.17e-03

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 1.17e-03

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  472 AEAHANLASAYKDSGHVEAAVKSYKQALILRPDF 505
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34

TPR_19

Tetratricopeptide repeat;

315-379

1.26e-03

Tetratricopeptide repeat;

Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.26e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  315 QGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQALTNLGNI 379
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65

TPR_11

TPR repeat;

481-512

1.35e-03

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.45 E-value: 1.35e-03

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  481 AYKDSGHVEAAVKSYKQALILRPDFPEATCNL 512
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNL 34

COG3899

Predicted ATPase [General function prediction only];

240-397

1.42e-03

Predicted ATPase [General function prediction only];

Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.54 E-value: 1.42e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  240 LAGLFMESGDFNRALQYYKEAvklkpsfpdaylnlGNVYKALGMPQEAIACYQHALQ------TRPNYGMAYGNLASIYY 313
Cdd:COG3899   691 LAHHLNRAGERDRAARLLLRA--------------ARRALARGAYAEALRYLERALEllppdpEEEYRLALLLELAEALY 756

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  314 EQGQLDMAILHYKQAVACD-------------PRFLEAYNNLGNALkdVGRVEEAIQCYNQCLTL------QPNHPQALT 374
Cdd:COG3899   757 LAGRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLLL--LGDYEEAYEFGELALALaerlgdRRLEARALF 834

                         170       180
                  ....*....|....*....|...
gi 356535232  375 NLGNIYMEWNMVAAAAQYYKATL 397
Cdd:COG3899   835 NLGFILHWLGPLREALELLREAL 857

TPR_7

pfam13176

Tetratricopeptide repeat;

168-195

1.56e-03

Tetratricopeptide repeat;

Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.13 E-value: 1.56e-03

                          10        20
                  ....*....|....*....|....*...
gi 356535232  168 AWSNLASAYMRKGRLTEAAQCCRQALAI 195
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

234-265

1.59e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 1.59e-03

                          10        20        30
                  ....*....|....*....|....*....|..
gi 356535232  234 AIAWSNLAGLFMESGDFNRALQYYKEAVKLKP 265
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

423-475

1.59e-03

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.08 E-value: 1.59e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 356535232 423 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAH 475
Cdd:PLN03088  21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

TPR_10

pfam13374

Tetratricopeptide repeat;

336-370

1.64e-03

Tetratricopeptide repeat;

Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 37.10 E-value: 1.64e-03

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 356535232  336 LEAYNNLGNALKDVGRVEEAIQCYNQCL-----TLQPNHP 370
Cdd:pfam13374   2 ASSLNNLANALRAQGRYDEAEELLEEALairerVLGPDHP 41

TPR_17

Tetratricopeptide repeat;

290-322

1.71e-03

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.75 E-value: 1.71e-03

                          10        20        30
                  ....*....|....*....|....*....|...
gi 356535232  290 CYQHALQTRPNYGMAYGNLASIYYEQGQLDMAI 322
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33

TPR_17

Tetratricopeptide repeat;

154-187

2.11e-03

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.37 E-value: 2.11e-03

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  154 YYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQ 187
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

472-504

2.73e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 2.73e-03

                          10        20        30
                  ....*....|....*....|....*....|...
gi 356535232  472 AEAHANLASAYKDSGHVEAAVKSYKQALILRPD 504
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

EST1_DNA_bind

pfam10373

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...

287-348

2.88e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.

Pssm-ID: 431239 Cd Length: 279 Bit Score: 40.86 E-value: 2.88e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356535232  287 AIACYQHALQTRPNYGMAYGNLASIYYEQG-QLDmAILHYKQAVACDPRFLEAYNNLGNALKD 348
Cdd:pfam10373   1 ALRYYLLAILLLPSNGEPYNQLGVIALYVGnHLD-AVYYFLRSLLSRNPFPTAKNNLELLFDK 62

PRK11447

cellulose synthase subunit BcsC; Provisional

308-443

3.18e-03

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.61 E-value: 3.18e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  308 LASIyyEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHPQ--------------AL 373
Cdd:PRK11447  277 LAAV--DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNrdkwesllkvnrywLL 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356535232  374 TNLGNIYMEWNMVAAAAQYYKATLNV-TTGLSAPYnNLAIIYKQQGNYVDAISCYNEVLRIDPL---AADGLVN 443
Cdd:PRK11447  355 IQQGDAALKANNLAQAERLYQQARQVdNTDSYAVL-GLGDVAMARKDYAAAERYYQQALRMDPGntnAVRGLAN 427

BTAD

smart01043

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...

122-194

3.19e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.

Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 39.21 E-value: 3.19e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356535232   122 EEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAA---QCCRQALA 194
Cdd:smart01043  51 AERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALrayRRLRRLLA 126

PRK11189

lipoprotein NlpI; Provisional

275-427

3.39e-03

lipoprotein NlpI; Provisional

Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 40.64 E-value: 3.39e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 275 GNVYKALGMPQEAIACYQHALQTRPNYGMAYgNLASIYYEQ-GQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVE 353
Cdd:PRK11189  71 GVLYDSLGLRALARNDFSQALALRPDMADAY-NYLGIYLTQaGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 354 EAIQCYNQCLTLQPNHP----------------QALTNLGNIYME-------WNMVaaaaQYY-----------KATLNV 399
Cdd:PRK11189 150 LAQDDLLAFYQDDPNDPyralwlylaeskldpkQAKENLKQRYEKldkeqwgWNIV----EFYlgkiseetlmeRLKAGA 225

                        170       180       190
                 ....*....|....*....|....*....|....
gi 356535232 400 TTG------LSAPYNNLAIIYKQQGNYVDAISCY 427
Cdd:PRK11189 226 TDNtelaerLCETYFYLAKYYLSLGDLDEAAALF 259

SNAP

pfam14938

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...

120-294

3.97e-03

Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 40.24 E-value: 3.97e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  120 KNEEAlriephfAECYGNMANAWKekgnidlairyyliaieLRPNFADAwsnlASAYMRkgrlteAAQCcrqalainplm 199
Cdd:pfam14938  22 KYEEA-------ADLYIQAANAYK-----------------LAKNWEEA----GEAFEK------AAEC----------- 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232  200 vdaHSNLGNLMKAQGLVQEAYSCYLealRIQPTFAIAWSNLA-GLFMESGDFNRALQYYKEavklkpsfpdaylnLGNVY 278
Cdd:pfam14938  57 ---QLKLGSKDEAANAYVEAAKCYK---KVDPEEAVRALEKAiEIYTEMGRFRRAAKHKKE--------------IAELY 116

                         170
                  ....*....|....*..
gi 356535232  279 -KALGMPQEAIACYQHA 294
Cdd:pfam14938 117 eQELGDLEKAIEAYEQA 133

TPR_19

Tetratricopeptide repeat;

282-340

4.00e-03

Tetratricopeptide repeat;

Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 4.00e-03

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 356535232  282 GMPQEAIACYQHALQTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYN 340
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60

TPR_9

pfam13371

Tetratricopeptide repeat;

410-476

4.62e-03

Tetratricopeptide repeat;

Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 36.81 E-value: 4.62e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356535232  410 LAIIYKQQGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHA 476
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEA 67

TPR_2

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

304-334

5.08e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 5.08e-03

                          10        20        30
                  ....*....|....*....|....*....|.
gi 356535232  304 AYGNLASIYYEQGQLDMAILHYKQAVACDPR 334
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

TPR

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

472-505

5.68e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 5.68e-03

                           10        20        30
                   ....*....|....*....|....*....|....
gi 356535232   472 AEAHANLASAYKDSGHVEAAVKSYKQALILRPDF 505
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

BTAD

smart01043

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...

160-228

5.91e-03

Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 38.44 E-value: 5.91e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232   160 ELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHsnlGNLMKA------QGLVQEAYSCYLEALR 228
Cdd:smart01043  55 RLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLH---RLLMRAlyragrRAEALRAYRRLRRLLA 126

COG3899

Predicted ATPase [General function prediction only];

80-203

6.78e-03

Predicted ATPase [General function prediction only];

Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.61 E-value: 6.78e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   80 YKQALEHSNTVYERNPlRTDNLLLLGAVYYQLHDFDMCVAKNEEALRIE-------------PHFAECYGNMANAWkeKG 146
Cdd:COG3899   728 LERALELLPPDPEEEY-RLALLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLLL--LG 804

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356535232  147 NIDLAIRYYLIAIEL------RPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAH 203
Cdd:COG3899   805 DYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAA 867

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

54-115

7.06e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 7.06e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  54 LRGHDSSEVDEDVYLSLAHQMYKTGNYKQALEHSNTVYERNP---LRTDNLLLLGAVYYQLHDFD 115
Cdd:COG1729   20 LKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYD 84

PRK02603

photosystem I assembly protein Ycf3; Provisional

122-197

7.09e-03

photosystem I assembly protein Ycf3; Provisional

Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 38.50 E-value: 7.09e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232 122 EEALRIEPH---FAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTE-------------- 184
Cdd:PRK02603  59 EEALKLEEDpndRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqdeaealfdk 138

                         90
                 ....*....|...
gi 356535232 185 AAQCCRQALAINP 197
Cdd:PRK02603 139 AAEYWKQAIRLAP 151

TPR_16

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...

272-333

7.35e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.

Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 7.35e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 356535232  272 LNLGNVYKALGMPQEAIACYQHAL---QTRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDP 333
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65

TPR_19

Tetratricopeptide repeat;

146-197

7.73e-03

Tetratricopeptide repeat;

Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 7.73e-03

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 356535232  146 GNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINP 197
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADP 53

TPR_17

Tetratricopeptide repeat;

222-255

8.69e-03

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 34.83 E-value: 8.69e-03

                          10        20        30
                  ....*....|....*....|....*....|....
gi 356535232  222 CYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQ 255
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34

TPR_12

Tetratricopeptide repeat;

66-127

8.94e-03

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.94e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356535232   66 VYLSLAHQMYKTGNYKQALEHSNTVYER--------NPLRTDNLLLLGAVYYQLHDFDMCVAKNEEALRI 127
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74

PilF