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Conserved domains on  [gi|302858205|ref|XP_002960040|]
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uncharacterized protein VOLCADRAFT_49396, partial [Volvox carteri f. nagariensis]

Protein Classification

cytochrome f( domain architecture ID 11414012)

cytochrome f is component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-206 6.62e-142

cytochrome f


:

Pssm-ID: 176978  Cd Length: 320  Bit Score: 398.52  E-value: 6.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   1 MVKEKLVavRAAFLAAMLGVvgILAVNPAEAYPVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVI 80
Cdd:CHL00037   9 WIKKQIT--RSISVSLMIYI--ITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  81 EIPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVP 160
Cdd:CHL00037  85 KIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSEIVFP 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 302858205 161 ILSPDPAKNKNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:CHL00037 165 ILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATA 210
 
Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-206 6.62e-142

cytochrome f


Pssm-ID: 176978  Cd Length: 320  Bit Score: 398.52  E-value: 6.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   1 MVKEKLVavRAAFLAAMLGVvgILAVNPAEAYPVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVI 80
Cdd:CHL00037   9 WIKKQIT--RSISVSLMIYI--ITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  81 EIPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVP 160
Cdd:CHL00037  85 KIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSEIVFP 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 302858205 161 ILSPDPAKNKNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:CHL00037 165 ILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATA 210
PetA COG5678
Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];
1-206 6.24e-114

Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];


Pssm-ID: 444392  Cd Length: 329  Bit Score: 327.74  E-value: 6.24e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   1 MVKEKLVAVR--AAFLAAMLGVVgilavNPAEAYPVFAQQNY-ANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFE 77
Cdd:COG5678   17 ITKTLLVAIAtvALFLASDLALP-----QSAAAYPFWAQQTApETPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFE 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  78 AVIEIPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEM 157
Cdd:COG5678   92 AVVKIPYDTSVQQVLGDGSKGGLNVGAVLMLPEGFKIAPEDRIPEELKEKVGGLYFQPYSEDQENVVIVGPLPGEQYQEI 171
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 302858205 158 VVPILSPDPAKNKNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:COG5678  172 VFPVLSPDPATDKNIHFGKYQVHVGANRGRGQVYPTGEKSNNNVYNASA 220
Apocytochr_F_N pfam16639
Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble ...
33-186 1.44e-104

Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain.


Pssm-ID: 435483  Cd Length: 154  Bit Score: 297.68  E-value: 1.44e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   33 PVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVIEIPYDKQVKQVLANGKKGDLNVGMVLILPEGF 112
Cdd:pfam16639   1 PFWAQQAYENPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLADGSKGGLNVGAVLMLPEGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 302858205  113 ELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPAKNKNVSFLKYPIYFGGNRG 186
Cdd:pfam16639  81 KLAPEDRIPEEMKEKTGGLYFQPYSEEKENILIVGPLPGDQYQEIVFPVLSPDPATDKSVHFGKYPVYVGGNRG 154
 
Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-206 6.62e-142

cytochrome f


Pssm-ID: 176978  Cd Length: 320  Bit Score: 398.52  E-value: 6.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   1 MVKEKLVavRAAFLAAMLGVvgILAVNPAEAYPVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVI 80
Cdd:CHL00037   9 WIKKQIT--RSISVSLMIYI--ITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  81 EIPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVP 160
Cdd:CHL00037  85 KIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSEIVFP 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 302858205 161 ILSPDPAKNKNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:CHL00037 165 ILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATA 210
PetA COG5678
Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];
1-206 6.24e-114

Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];


Pssm-ID: 444392  Cd Length: 329  Bit Score: 327.74  E-value: 6.24e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   1 MVKEKLVAVR--AAFLAAMLGVVgilavNPAEAYPVFAQQNY-ANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFE 77
Cdd:COG5678   17 ITKTLLVAIAtvALFLASDLALP-----QSAAAYPFWAQQTApETPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFE 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  78 AVIEIPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEM 157
Cdd:COG5678   92 AVVKIPYDTSVQQVLGDGSKGGLNVGAVLMLPEGFKIAPEDRIPEELKEKVGGLYFQPYSEDQENVVIVGPLPGEQYQEI 171
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 302858205 158 VVPILSPDPAKNKNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:COG5678  172 VFPVLSPDPATDKNIHFGKYQVHVGANRGRGQVYPTGEKSNNNVYNASA 220
PRK02693 PRK02693
apocytochrome f; Reviewed
11-206 1.43e-112

apocytochrome f; Reviewed


Pssm-ID: 179460  Cd Length: 312  Bit Score: 323.87  E-value: 1.43e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  11 AAFLAAMLGVVGILAV-NPAEAYPVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVIEIPYDKQVK 89
Cdd:PRK02693   7 LAFAGSLLLLASDLILpQSAAAYPFWAQQNYESPREATGKIVCANCHLAQKPTEVEVPQSVLPDSVFKAVVKIPYDTDVQ 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205  90 QVLANGKKGDLNVGMVLILPEGFELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPAKN 169
Cdd:PRK02693  87 QVGADGSKVGLNVGAVVMLPDGFKLAPQDRWTEEIKEETEGVYFTPYSEDQENIILVGPLPGDQYQEIVFPVLSPDPATD 166
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 302858205 170 KNVSFLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASA 206
Cdd:PRK02693 167 KNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNVFTASA 203
Apocytochr_F_N pfam16639
Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble ...
33-186 1.44e-104

Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain.


Pssm-ID: 435483  Cd Length: 154  Bit Score: 297.68  E-value: 1.44e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302858205   33 PVFAQQNYANPREANGRIVCANCHLAQKPVEIEVPQAVLPNTVFEAVIEIPYDKQVKQVLANGKKGDLNVGMVLILPEGF 112
Cdd:pfam16639   1 PFWAQQAYENPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLADGSKGGLNVGAVLMLPEGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 302858205  113 ELAPPDRIPEEIKKKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPAKNKNVSFLKYPIYFGGNRG 186
Cdd:pfam16639  81 KLAPEDRIPEEMKEKTGGLYFQPYSEEKENILIVGPLPGDQYQEIVFPVLSPDPATDKSVHFGKYPVYVGGNRG 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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