|
Name |
Accession |
Description |
Interval |
E-value |
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
2-1293 |
4.78e-132 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 438.71 E-value: 4.78e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 2 SRIDRLMIQGIRSFGPERGET--IKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKtGGAFLHDPKLQDEKEIMA 79
Cdd:TIGR00606 1 AKFLKMSILGVRSFGIEDKDKqiIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTK-GNTFVHDPKVAQETDVRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 80 QVKLSFRSTSGVRMVATRSMQVTVKKTGRSQKTLEGSLLMKKDTENHSISTRVAELDQIIPQYLGVPKAILDNVIFCHQE 159
Cdd:TIGR00606 80 QIRLQFRDVNGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 160 DSTWPLSDATTLKKKFDEIFEAMKYTKAIDNIKMIRKNRNIQLGQLKIIEGHAKEDKSRAFKSQTRQAELYDAIETLRKE 239
Cdd:TIGR00606 160 DSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 240 YVVIDEEVTEAQEKAREAYDHSVRYSRIVNDLefkrTTFDANKQSVAALEDNLTHMAE-----SDDELQSMLDQYKQRVE 314
Cdd:TIGR00606 240 VKSYENELDPLKNRLKEIEHNLSKIMKLDNEI----KALKSRKKQMEKDNSELELKMEkvfqgTDEQLNDLYHNHQRTVR 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 315 TYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKRHDIRGYDYD-ITDKQVADF 393
Cdd:TIGR00606 316 EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGpFSERQIKNF 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 394 KQILSKMSRDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSEVV 473
Cdd:TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 474 LQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQakesasidyarNELQSAQHSLTTMK 553
Cdd:TIGR00606 476 LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHH-----------TTTRTQMEMLTKDK 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 554 KVHNERISELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLES-------QLKKKRSELRQY 626
Cdd:TIGR00606 545 MDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQnknhinnELESKEEQLSSY 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 627 EQTVTKAIQRDDisdFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESARKHN--VCRLCERELHDDRSQKFTIEGFY 704
Cdd:TIGR00606 625 EDKLFDVCGSQD---EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsCCPVCQRVFQTEAELQEFISDLQ 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 705 SKLESIIAKAESAMKGENPEELLEELEQARnaKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEA 784
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLGL--APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 785 ERQEVESMSKEVQSIVGYYNKVHELEVQIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHI 864
Cdd:TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 865 TSLELSVRDINAELNNAQSKLKEKRALGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRA 944
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 945 HDEASKLSDSLRQLSQADEEITAYIQRGGPEQLARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISD 1024
Cdd:TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD 1019
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1025 NLRYRKAKRSLETLQadiEKLEAHGAERDQAHYTREAKHWDDQYHSLNTTKTS---IERDMKNKDDQLTELMKEY-EDIY 1100
Cdd:TIGR00606 1020 NLTLRKRENELKEVE---EELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNhvlALGRQKGYEKEIKHFKKELrEPQF 1096
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1101 QNADHQYKEAHLKVETTKAAIEDLGRYAGALDKAIMQYHTLKMEEINRIIAELWTNAYQGTDVDTIRIASDSD-----GK 1175
Cdd:TIGR00606 1097 RDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADenvsaSD 1176
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1176 GNRQYNYRVVMSKQDTEMDMRGRCSAGQKVLACLVIRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIIDMRR 1255
Cdd:TIGR00606 1177 KRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRS 1256
|
1290 1300 1310
....*....|....*....|....*....|....*...
gi 169621967 1256 KQSNFQLVVITHDETFLSAMNCSEYADHYFRESKIEQQ 1293
Cdd:TIGR00606 1257 QQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQ 1294
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
1193-1293 |
1.44e-39 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 145.83 E-value: 1.44e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1193 MDMRGRCSAGQKVLACLVIRLALAECFGTNCGLIALDEPTTNLDQQNIKglaESLSQIIDMRRKQSNFQLVVITHDETFL 1272
Cdd:cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIE---ESLAEIIEERKSQKNFQLIVITHDEELV 186
|
90 100
....*....|....*....|.
gi 169621967 1273 samncsEYADHYFRESKIEQQ 1293
Cdd:cd03240 187 ------DAADHIYRVEKDGRQ 201
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
4-167 |
1.12e-34 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 131.96 E-value: 1.12e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 4 IDRLMIQGIRSFgpERGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKTGGaflHDPKLQDEKEIMAQVKL 83
Cdd:cd03240 1 IDKLSIRNIRSF--HERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA---HDPKLIREGEVRAQVKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 84 SFRSTSGVRMVATRSMqvtvkktgrsqktlegsllmkkdtenhsistrvaeldqiipqylgvpkAILDNVIFCHQEDSTW 163
Cdd:cd03240 76 AFENANGKKYTITRSL------------------------------------------------AILENVIFCHQGESNW 107
|
....
gi 169621967 164 PLSD 167
Cdd:cd03240 108 PLLD 111
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
7-209 |
2.24e-27 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 110.28 E-value: 2.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 7 LMIQGIRSFgpeRGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKT--GGAFLHDPKLQDEKEIMAQVKLS 84
Cdd:pfam13476 1 LTIENFRSF---RDQTIDFSKGLTLITGPNGSGKTTILDAIKLALYGKTSRLKRKsgGGFVKGDIRIGLEGKGKAYVEIT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 85 FRSTSGVRMVATRSMQVTVKKTGRSQKTLEGSLLmkkdtenhsistRVAELDQIIPQYLGVPKAILdNVIFCHQEDSTWP 164
Cdd:pfam13476 78 FENNDGRYTYAIERSRELSKKKGKTKKKEILEIL------------EIDELQQFISELLKSDKIIL-PLLVFLGQEREEE 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 169621967 165 LSDAtTLKKKFDEIFEAMKYTKAIDNIKMIRKNRNIQLGQLKIIE 209
Cdd:pfam13476 145 FERK-EKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELEELK 188
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-1016 |
2.40e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.74 E-value: 2.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 287 ALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYD------- 359
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRerlanle 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 360 RQLVQRETLIKEAAKRHDIRGYDYDITDKQVADFKQILsKMSRDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQS 439
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL-ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 440 KESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERLT 519
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 520 NELGEATKQAKESASIDYA----RNELQSAQHSLTTMKKVHNE------RISEL--VDSDWDPA---TLETSYQQTLSEK 584
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSlerlQENLEGFSEGVKALLKNQSGlsgilgVLSELisVDEGYEAAieaALGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 585 ASKVKEATSRrdISQSKLDKINFQL----------SSLESQLKKKR------SELRQYEQTVTKAIQR--------DDIS 640
Cdd:TIGR02168 555 LNAAKKAIAF--LKQNELGRVTFLPldsikgteiqGNDREILKNIEgflgvaKDLVKFDPKLRKALSYllggvlvvDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 641 DFNETLEQLEADYEGVSTDAAKFAANAEYMRScleSARKHNVcRLC-ERELHDDRSQKFTIEGFYSKLESIIAKAESAmk 719
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLDGDLVRPGGVITGG---SAKTNSS-ILErRREIEELEEKIEELEEKIAELEKALAELRKE-- 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 720 genpeelleeLEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSi 799
Cdd:TIGR02168 707 ----------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE- 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 800 vgyynKVHELEVQIKDLAQKqktaglsrgIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELN 879
Cdd:TIGR02168 776 -----ELAEAEAEIEELEAQ---------IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 880 NAQSKLKEKRALGARIEEfktENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLS 959
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAA---EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 169621967 960 QADEEITAYIQRggpeqLARTHREIENLQGDLA-RVESEMMDVMRKIKKIEDSVRDVE 1016
Cdd:TIGR02168 919 ELREKLAQLELR-----LEGLEVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
278-1144 |
2.28e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.12 E-value: 2.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 278 FDANKQsvAALEDnLTHMAESDDELQSMLDQYKQRVETYATQNdEHRHEYADLKDALEVTRESLGVKQSEigKYEAQKEQ 357
Cdd:TIGR02169 168 FDRKKE--KALEE-LEEVEENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEKREYEGYELLKEKE--ALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 358 YDRQLVQREtlikeaakrhdirgydyditdKQVADFKQILSKMSRDQNRALERARQESQKDLKEAQDDLNQLNTRKSGAS 437
Cdd:TIGR02169 242 IERQLASLE---------------------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 438 QSKESARSQIANNDKRISDLQKAMVQIKADEGSevvLQDKKRDTEEQLqnasaasssERYEERVQEASNNMRTLEDKKER 517
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDK---LLAEIEELEREI---------EEERKRRDKLTEEYAELKEELED 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 518 LTNELGEATKQAKES-ASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLEtsyqQTLSEKASKVKEATSRRD 596
Cdd:TIGR02169 369 LRAELEEVDKEFAETrDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN----AAIAGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 597 ISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAiqRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLES 676
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV--EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQG 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 677 arkhnvcrlcereLHDDRSQKFTIEGFYSK-LESIIAKAESAMKGENPEELLE--ELEQARNAKPSYELALR-----LRD 748
Cdd:TIGR02169 523 -------------VHGTVAQLGSVGERYATaIEVAAGNRLNNVVVEDDAVAKEaiELLKRRKAGRATFLPLNkmrdeRRD 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 749 TEIPALQ------IDMSKLTSERENVNKQLEDQDSIVHELEAERQ-----EVESMSKEV----QSIVGYYNKVHELEVQI 813
Cdd:TIGR02169 590 LSILSEDgvigfaVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRlmgkyRMVTLEGELfeksGAMTGGSRAPRGGILFS 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 814 KdlAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLKEKRAlga 893
Cdd:TIGR02169 670 R--SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE--- 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 894 RIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRR-GNERVQRAHDEASKLSDSLRQLSQADEEITAYIQRG 972
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 973 GPE--------------------QLARTHREIENLQGDLARVESEmmdvmrkIKKIEDSVRDVEMTKRSIS---DNLRY- 1028
Cdd:TIGR02169 825 TLEkeylekeiqelqeqridlkeQIKSIEKEIENLNGKKEELEEE-------LEELEAALRDLESRLGDLKkerDELEAq 897
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1029 -RKAKRSLETLQADIEKLEAHGAERDQAHYT--REAKHWDDQYHSL--NTTKTSIERDMKNKDDQLTELMKEYEDIYQNA 1103
Cdd:TIGR02169 898 lRELERKIEELEAQIEKKRKRLSELKAKLEAleEELSEIEDPKGEDeeIPEEELSLEDVQAELQRVEEEIRALEPVNMLA 977
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 169621967 1104 DHQYKEAHLKVETTKAAIEDLGRYAGALDKAIMQYHTLKME 1144
Cdd:TIGR02169 978 IQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
531-1278 |
8.74e-13 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 73.01 E-value: 8.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 531 ESASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLETSYQQTLSEK---ASKVKEATSRRDIS---QSKLDK 604
Cdd:PRK01156 181 EISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYnnlKSALNELSSLEDMKnryESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 605 INFQLSSLESQLKKKRSELRQYEQTVTKAI--QRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESARKHNV 682
Cdd:PRK01156 261 AESDLSMELEKNNYYKELEERHMKIINDPVykNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYND 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 683 CRLCERELHDDRSQKFTIEGFYSKLESIIAKAESAMKgenpeelleeleQARNAKPSYELALRLRDTEIPALQIDMSKLT 762
Cdd:PRK01156 341 YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK------------KIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 763 SERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSIVGYYNKVHELEVQIKDLAQKQktaglsrgidavqsdLKTITDD 842
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEK---------------SNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 843 SRNARNVLEQltaardksrnHITSLELSVRDINAELnnAQSKLKEKRALGARIEEFKTENNKQRELiRGYDKDIEGLVPE 922
Cdd:PRK01156 474 YNEKKSRLEE----------KIREIEIEVKDIDEKI--VDLKKRKEYLESEEINKSINEYNKIESA-RADLEDIKIKINE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 923 IEQAQYKYDDINRRGNErvQRAHDEASKLSDSLRQLSQADEEITAYIQRggpeQLARTHREIENLQGDLARVESEMMDVM 1002
Cdd:PRK01156 541 LKDKHDKYEEIKNRYKS--LKLEDLDSKRTSWLNALAVISLIDIETNRS----RSNEIKKQLNDLESRLQEIEIGFPDDK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1003 ----RKIKKIEDSVRDVEMTKRSISDNlryrkaKRSLETLQADIEKLEAHGAERD-----QAHYTREAKHWDDQYHSLNT 1073
Cdd:PRK01156 615 syidKSIREIENEANNLNNKYNEIQEN------KILIEKLRGKIDNYKKQIAEIDsiipdLKEITSRINDIEDNLKKSRK 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1074 TKTSIERDMKNKDDQLTELMKEYEDIYQNADHQYKEAHlKVETTKAAIEDLGRYAGALDKAIMQyhTLKMEEINRIIAEL 1153
Cdd:PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRINDINETLE-SMKKIKKAIGDLKRLREAFDKSGVP--AMIRKSASQAMTSL 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1154 WTNAYQGTDVDTIRIASDSDgkgnrqYNYRVVMSKQDTEMDmrgRCSAGQKVLACLVIRLALAECFGTNCGLIALDEPTT 1233
Cdd:PRK01156 766 TRKYLFEFNLDFDDIDVDQD------FNITVSRGGMVEGID---SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTA 836
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 169621967 1234 NLDQQNikglAESLSQIIDMRRKQSNF--QLVVITHDETFLSAMNCS 1278
Cdd:PRK01156 837 FLDEDR----RTNLKDIIEYSLKDSSDipQVIMISHHRELLSVADVA 879
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
4-1028 |
4.81e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 4.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 4 IDRLMIQGIRSFGPERgeTIKFDPPLTLIVGWNGSGKTTIIECLRYA------------TTGDLPPHSKTGGAFLHdpkl 71
Cdd:TIGR02169 2 IERIELENFKSFGKKK--VIPFSKGFTVISGPNGSGKSNIGDAILFAlglssskamraeRLSDLISNGKNGQSGNE---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 72 qdekeimAQVKLSFRSTSGVR---MVATRSMQVTvKKTGRSQKTLEGSllmkkdtenhsiSTRVAELDQIIPQYLGVPKA 148
Cdd:TIGR02169 76 -------AYVTVTFKNDDGKFpdeLEVVRRLKVT-DDGKYSYYYLNGQ------------RVRLSEIHDFLAAAGIYPEG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 149 IldNVIFchQEDSTWPLS-DATTLKKKFDEI-----FEAmKYTKAIDNIKMIRKNRNI----------QLGQLKIIEGHA 212
Cdd:TIGR02169 136 Y--NVVL--QGDVTDFISmSPVERRKIIDEIagvaeFDR-KKEKALEELEEVEENIERldliidekrqQLERLRREREKA 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 213 KE-DKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVTEAQEK----AREAYDHSVRYSRIVNDLE--------------- 272
Cdd:TIGR02169 211 ERyQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEleklTEEISELEKRLEEIEQLLEelnkkikdlgeeeql 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 273 -FKRTTFDANKQ------SVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQ 345
Cdd:TIGR02169 291 rVKEKIGELEAEiaslerSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 346 SEIGKYEAQKEQYDRQLVQRETLIKEAAKRHD--IRGYDYDITDKQ-----VADFKQILSKMSRDQNrALERARQESQKD 418
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINelKRELDRLQEELQrlseeLADLNAAIAGIEAKIN-ELEEEKEDKALE 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 419 LKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQN---------AS 489
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvAQ 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 490 AASSSERYEERVQEASNNmrtledkkeRLTNELGEATKQAKESASIDYARNELQSAQHSLTTMKKVHNE--RISE----- 562
Cdd:TIGR02169 530 LGSVGERYATAIEVAAGN---------RLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDlsILSEdgvig 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 563 ----LVDSD--WDPA--------------------------------TLETSYQQTLSEKASKVKEATSRRDisQSKLDK 604
Cdd:TIGR02169 601 favdLVEFDpkYEPAfkyvfgdtlvvedieaarrlmgkyrmvtlegeLFEKSGAMTGGSRAPRGGILFSRSE--PAELQR 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 605 INFQLSSLESQLKKKRSELRQYEQTVTKAiqRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESarkhnvcr 684
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDEL--SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS-------- 748
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 685 lCERELHDDRSQKFTIEGFYSKLESIIAKAESAMKgenpeelleeleqarnakpsyELALRLRDTEIPALQIDMSKLTSE 764
Cdd:TIGR02169 749 -LEQEIENVKSELKELEARIEELEEDLHKLEEALN---------------------DLEARLSHSRIPEIQAELSKLEEE 806
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 765 RENVNKQLEDQDSIVHELEAERQEVESMSKEVQsivgyyNKVHELEVQIKDLAQKQktAGLSRGIDAVQSDLKTITDDSR 844
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ------EQRIDLKEQIKSIEKEI--ENLNGKKEELEEELEELEAALR 878
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 845 NARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLKEkraLGARIEEfKTENNKQRELIRGYDKDIEGLVPEIE 924
Cdd:TIGR02169 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE---LKAKLEA-LEEELSEIEDPKGEDEEIPEEELSLE 954
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 925 QAQykyddinrrgnERVQRAHDEASKLSDslrqlsqadeeitayIQRGGPEQLARTHREIENLQGDLARVESEMMDVMRK 1004
Cdd:TIGR02169 955 DVQ-----------AELQRVEEEIRALEP---------------VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
1130 1140
....*....|....*....|....*
gi 169621967 1005 IKKIEDSVRDVEM-TKRSISDNLRY 1028
Cdd:TIGR02169 1009 IEEYEKKKREVFMeAFEAINENFNE 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
412-1124 |
2.37e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 412 RQESQKDLKEAQDDLN-----------QLNTRKSGASQSKESA--RSQIANNDKRIS--DLQKAMVQIKADEGSEVVLQD 476
Cdd:TIGR02168 174 RKETERKLERTRENLDrledilnelerQLKSLERQAEKAERYKelKAELRELELALLvlRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 477 KKRDTEEQLQNASAasSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKE-SASIDYARNELQSAQHSLTTMKKV 555
Cdd:TIGR02168 254 ELEELTAELQELEE--KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIlRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 556 HNERISELVDSDWDPATLETSYQQT---LSEKASKVKEATS------------RRDISQ--SKLDKINFQLSSLESQLKK 618
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLeaeLEELEAELEELESrleeleeqletlRSKVAQleLQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 619 KRSELRQYEQTVTKAIQRDDISDFNETLEQLEA-DYEGVSTDAAKFAANAEYMRSCLESARKHNVCRLCERELHDDRSQK 697
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 698 FTIEGFYSKLESI-IAKAESAMKGENPEELLEELEQARNAKPSYELALRL------------------------------ 746
Cdd:TIGR02168 492 DSLERLQENLEGFsEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavvvenlnaakkaiaflkqnelg 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 747 RDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEaerQEVESMSKEVQSIVGYYNKVHELEvqiKDLAQKQKTAGLS 826
Cdd:TIGR02168 572 RVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV---KFDPKLRKALSYLLGGVLVVDDLD---NALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 827 RgIDAVQSDLKT----ITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKL----KEKRALGARIEEF 898
Cdd:TIGR02168 646 R-IVTLDGDLVRpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELeeleEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 899 KTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAYIQR--GGPEQ 976
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 977 LARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDNLryRKAKRSLETLQADIEKLEahgaerdqah 1056
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI--ESLAAEIEELEELIEELE---------- 872
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 169621967 1057 ytREAKHWDDQYHSLNTTKTSIERDMKNKDDQLTEL---MKEYEDIYQNADHQYKEAHLKVETTKAAIEDL 1124
Cdd:TIGR02168 873 --SELEALLNERASLEEALALLRSELEELSEELRELeskRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1195-1272 |
9.55e-11 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 61.61 E-value: 9.55e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169621967 1195 MRGRCSAGQKVLACLVIRLALAECfgTNCGLIALDEPTTNLDQQNIKGLAESLsqiidMRRKQSNFQLVVITHDETFL 1272
Cdd:cd03227 74 TRLQLSGGEKELSALALILALASL--KPRPLYILDEIDRGLDPRDGQALAEAI-----LEHLVKGAQVIVITHLPELA 144
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
3-97 |
1.01e-10 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 62.72 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 3 RIDRLMIQGIRSFgpERGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKTGGAFLHDPKLQdekeimAQVK 82
Cdd:COG0419 1 KLLRLRLENFRSY--RDTETIDFDDGLNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEE------ASVE 72
|
90
....*....|....*
gi 169621967 83 LSFrSTSGVRMVATR 97
Cdd:COG0419 73 LEF-EHGGKRYRIER 86
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
758-1269 |
1.26e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 758 MSKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSIVgyyNKVHELEvqiKDLAQKQKTAGLSRGIDAVQSDLK 837
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK---KKLKELE---KRLEELEERHELYEEAKAKKEELE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 838 TItdDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLKEKRALGARIEEFK----------TENNKQrE 907
Cdd:PRK03918 376 RL--KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgrelTEEHRK-E 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 908 LIRGYDKDIEGLVPEIEQAQYKYDDINRRGN--ERVQRAHDEASKLSDSLRQLSQADEEITAYiqrgGPEQLARTHREIE 985
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKY----NLEELEKKAEEYE 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 986 NLQGDLARVESEMMDVMRKIKKIED----------SVRDVEMTKRSISDNLRyRKAKRSLETLQADIEKLEA-------- 1047
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEElkkklaelekKLDELEEELAELLKELE-ELGFESVEELEERLKELEPfyneylel 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1048 ----HGAERDQAHYTREAKHWDDQYHSLNTTKTSIER---------------DMKNKDDQLTELMKEYEdiyqNADHQYK 1108
Cdd:PRK03918 608 kdaeKELEREEKELKKLEEELDKAFEELAETEKRLEElrkeleelekkyseeEYEELREEYLELSRELA----GLRAELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1109 EAHLKVETTKAAIEDLGRYAGALDKAIMQYHTL-----KMEEINRIIAELWTNAYQGTDVDTIRIASD-----SDGK--- 1175
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEKLekaleRVEELREKVKKYKALLKERALSKVGEIASEifeelTEGKysg 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1176 ------GNRqynYRVVMSKQDTEMDMrGRCSAGQKVLACLVIRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQ 1249
Cdd:PRK03918 764 vrvkaeENK---VKLFVVYQGKERPL-TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER 839
|
570 580
....*....|....*....|
gi 169621967 1250 IIdmrRKQSnfQLVVITHDE 1269
Cdd:PRK03918 840 YL---RKIP--QVIIVSHDE 854
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
23-638 |
3.64e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 61.46 E-value: 3.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 23 IKFDPPLTLIVGWNGSGKTTIIECLRYATTGDlpphskTGGAFLHDPKLQDEKEImaQVKLSFRSTSGVRMVaTRSMQvt 102
Cdd:PRK01156 19 IEFDTGINIITGKNGAGKSSIVDAIRFALFTD------KRTEKIEDMIKKGKNNL--EVELEFRIGGHVYQI-RRSIE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 103 vkktgRSQKTLEGSLLMKKDTENHSISTRVAElDQIIPQYLGVPKAILDNVIFCHQEDSTWPLS-DATTLKKKFDEIFEA 181
Cdd:PRK01156 88 -----RRGKGSRREAYIKKDGSIIAEGFDDTT-KYIEKNILGISKDVFLNSIFVGQGEMDSLISgDPAQRKKILDEILEI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 182 MKYTKAIDNIKMIRKNRNIQLGQLKIIEGHAKedksrafKSQTRQAELYDAIETLRKEYVVIDEEVTEAQEKAREAYDHS 261
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLK-------SSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 262 VRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESL 341
Cdd:PRK01156 235 NNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 342 GVKQSEIGKYEA-QKEQYDRQLVQRETLIKEAAK------RHDIRGY---------DYDITDKQVADFKQILSKMSRDQN 405
Cdd:PRK01156 315 SNIDAEINKYHAiIKKLSVLQKDYNDYIKKKSRYddlnnqILELEGYemdynsylkSIESLKKKIEEYSKNIERMSAFIS 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 406 RALERAR---QESQKDLKEAQDDLNQLNTRKSGASQSKESARSqianndkRISDLQKAMVQIKADEGSEVVLQDKKRDTE 482
Cdd:PRK01156 395 EILKIQEidpDAIKKELNEINVKLQDISSKVSSLNQRIRALRE-------NLDELSRNMEMLNGQSVCPVCGTTLGEEKS 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 483 EQLQNASAASSSeRYEERVQEASNNMRTLEDKKERLTNEL-----GEATKQAKESASIDYARNELQSAQHSLTTMKKVHN 557
Cdd:PRK01156 468 NHIINHYNEKKS-RLEEKIREIEIEVKDIDEKIVDLKKRKeylesEEINKSINEYNKIESARADLEDIKIKINELKDKHD 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 558 EriSELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAIQRD 637
Cdd:PRK01156 547 K--YEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREI 624
|
.
gi 169621967 638 D 638
Cdd:PRK01156 625 E 625
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
148-1095 |
4.03e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 148 AILDNVIFCHQEDSTWPLSDATTLKKKFDEIFEAMKYTKAIDNIKMIRKNRNIQLGQLKIIEGHAKEDKSRAfKSQTRQA 227
Cdd:PTZ00121 1012 ALTANTIDFNQNFNIEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDA-KEDNRAD 1090
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 228 ELYDA----IETLRKEYVVIDEEVTEAQEKAREAYDhsVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQ 303
Cdd:PTZ00121 1091 EATEEafgkAEEAKKTETGKAEEARKAEEAKKKAED--ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 304 SMLDQYKQRVEtyATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKR-HDIRGYD 382
Cdd:PTZ00121 1169 ARKAEDAKKAE--AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDaEEAKKAE 1246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 383 YDITDKQVADFKQILSKMSRDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQiANNDKRISDLQKamv 462
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-AEEAKKADEAKK--- 1322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 463 qiKADEGSEVVLQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDYARNEL 542
Cdd:PTZ00121 1323 --KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 543 QSAQHSLTTMKKVHNERISElvdSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLES----QLKK 618
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkadEAKK 1477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 619 KRSELRQYEQTVTKAIQRDDISDfnETLEQLEADYEGVSTDAAKFAANAEYMRSClESARKHNVCRLCERELHDDRSQKf 698
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKAD--EAKKAAEAKKKADEAKKAEEAKKADEAKKA-EEAKKADEAKKAEEKKKADELKK- 1553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 699 tiegfysklESIIAKAESAMKGENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSI 778
Cdd:PTZ00121 1554 ---------AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 779 VHELEAERQEVESMSKEVQSIVGY---------YNKVHELEVQIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNV 849
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKaeelkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 850 lEQL--TAARDKSRNHITSLELSVRDINAELNNAQSKLKEKRALGARIEEfkTENNKQRELIRGYDKDIEGLVPE----I 923
Cdd:PTZ00121 1705 -EELkkKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE--EEKKKIAHLKKEEEKKAEEIRKEkeavI 1781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 924 EQAQYKYDDINRRGNERVQRahdeasKLSDSLRQLSQADEEITAYIQRGGPEQLARTHREIenlqgDLARVESEMMDVMR 1003
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIK------DIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVA-----DSKNMQLEEADAFE 1850
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1004 KIKKIEDSVRDVEMTKRSISDNLRYRKAKRSLETLQAD-IEKLEAHGAERDQAHYTREAKHWDDQYHSLNTTKTsIERDM 1082
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADeIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEY-IKRDA 1929
|
970
....*....|...
gi 169621967 1083 KNKDDQLTELMKE 1095
Cdd:PTZ00121 1930 EETREEIIKISKK 1942
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
3-827 |
4.48e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 4.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 3 RIDRLMIQGIRSfgpERGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPphsktggAFLHDPKLQDEKEImaqvk 82
Cdd:PRK03918 2 KIEELKIKNFRS---HKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHG-------SKPKGLKKDDFTRI----- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 83 lsfrSTSGVRMVatrsmqVTVKKTGRSQKTLEGSLLMKKDTENHSISTRVAELDQIIPQYLG--VPKAILDNVIFCHQED 160
Cdd:PRK03918 67 ----GGSGTEIE------LKFEKNGRKYRIVRSFNRGESYLKYLDGSEVLEEGDSSVREWVErlIPYHVFLNAIYIRQGE 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 161 STWPLSDATTLKKKFDEIFEAMKYTKAIDNIKMIRKnrniqlgqlkiiegHAKEDKSRAFKSQTRQAELYDAIETLRKEY 240
Cdd:PRK03918 137 IDAILESDESREKVVRQILGLDDYENAYKNLGEVIK--------------EIKRRIERLEKFIKRTENIEELIKEKEKEL 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 241 VVIDEEVTEAQEKAREAYDHSVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQN 320
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 321 DE------HRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETL---IKEAAKRHDIRGYDYDITDKQVA 391
Cdd:PRK03918 283 KElkelkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELEERHE 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 392 DFKQILSKMSRDQNRALERARQESQKDLKEaqddLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSE 471
Cdd:PRK03918 363 LYEEAKAKKEELERLKKRLTGLTPEKLEKE----LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 472 VVLqdKKRDTEEQLQNASAASSSE--RYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDyarnELQSAQHSL 549
Cdd:PRK03918 439 PVC--GRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE----QLKELEEKL 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 550 ttmKKVHNERISElvdsdwdpatlETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQT 629
Cdd:PRK03918 513 ---KKYNLEELEK-----------KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 630 VTKaIQRDDISDFNETLEQLEADYEgvstdaakfaanaEYMRscLESARKHnvcrlCERELHDDRSQKFTIEGFYSKLES 709
Cdd:PRK03918 579 LEE-LGFESVEELEERLKELEPFYN-------------EYLE--LKDAEKE-----LEREEKELKKLEEELDKAFEELAE 637
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 710 IIAKAESAMKGENPEELLEELEQARNAKPSYElalrlrdteipALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQEV 789
Cdd:PRK03918 638 TEKRLEELRKELEELEKKYSEEEYEELREEYL-----------ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
810 820 830
....*....|....*....|....*....|....*...
gi 169621967 790 ESMSKEVQSIVGYYNKVHELEVQIKDLAQKQKTAGLSR 827
Cdd:PRK03918 707 EKAKKELEKLEKALERVEELREKVKKYKALLKERALSK 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-656 |
4.83e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 4.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 275 RTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQ 354
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 355 KEQYDRQLVQRETLIKEAAKRHDIRGYDYDITDKQVADFKQILSKMsRDQNRALERARQESQKDLKEAQDDLNQLNTRKS 434
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 435 GASQSKESARSQIANNDKRISDLQKAMVQIKADegsEVVLQDKKRDTEEQLQNAsaassseryEERVQEASNNMRTLEDK 514
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESE---LEALLNERASLEEALALL---------RSELEELSEELRELESK 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 515 KERLTNELGEATKQAKEsasidyARNELQSAQHSLTTMKkvhnERISELvdsdwdpatletsYQQTLSEKASKVKEATSR 594
Cdd:TIGR02168 910 RSELRRELEELREKLAQ------LELRLEGLEVRIDNLQ----ERLSEE-------------YSLTLEEAEALENKIEDD 966
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 595 RDISQSKLDKINFQLSSLE----------SQLKKKRSELRQYEQTVTKAIQR--------DDI--SDFNETLEQLEADYE 654
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELGpvnlaaieeyEELKERYDFLTAQKEDLTEAKETleeaieeiDREarERFKDTFDQVNENFQ 1046
|
..
gi 169621967 655 GV 656
Cdd:TIGR02168 1047 RV 1048
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
298-662 |
6.22e-09 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 60.70 E-value: 6.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 298 SDDELQSMLDQYKQRVETYATQndehrheyADLKDALEVTRESLGVKQseigKYEAQKEQYDRQLVQRETLIKEAAKRHD 377
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAED--------KLVQQDLEQTLALLDKID----RQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 378 irgydyDITDKQVADFKQILSKMSRDQnraLERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDL 457
Cdd:PRK11281 105 ------ALKDDNDEETRETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQI 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 458 QKAMVQIKADEGSEVVLQDKKRDTEEQLQNASAAssserYEERVQEASNNMRTLEDKKERLTNE---------------- 521
Cdd:PRK11281 176 RNLLKGGKVGGKALRPSQRVLLQAEQALLNAQND-----LQRKSLEGNTQLQDLLQKQRDYLTAriqrlehqlqllqeai 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 522 ----LGEATKQAKESASIDyarnELQSAQH-SLTTMKKVHNERISE-LVDsdwdpATLETSyqqTLSEKASKVKEATSRR 595
Cdd:PRK11281 251 nskrLTLSEKTVQEAQSQD----EAARIQAnPLVAQELEINLQLSQrLLK-----ATEKLN---TLTQQNLRVKNWLDRL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 596 DISQSKLD-------------KINFQ----LSSLE--SQLKKKRSELRQYEQTVTKaiQRDDISDFNETLEQLEADYEGV 656
Cdd:PRK11281 319 TQSERNIKeqisvlkgslllsRILYQqqqaLPSADliEGLADRIADLRLEQFEINQ--QRDALFQPDAYIDKLEAGHKSE 396
|
....*.
gi 169621967 657 STDAAK 662
Cdd:PRK11281 397 VTDEVR 402
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
204-491 |
3.00e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 204 QLKIIEGHAKEDKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVTEAQEKAREAydhSVRYSRIVNDLEFkrttfdaNKQ 283
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL---LAELARLEQDIAR-------LEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 284 SVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLV 363
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 364 QRETLIKEAAKRHDIRgydyditDKQVADFKQILSKMsRDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESA 443
Cdd:COG1196 390 EALRAAAELAAQLEEL-------EEAEEALLERLERL-EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 169621967 444 RSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQNASAA 491
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
212-658 |
4.82e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 212 AKEDKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVTEAqEKAREAYDHSVRYSR-IVNDLEFKRT----TFDANKQSVA 286
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET-EREREELAEEVRDLReRLEELEEERDdllaEAGLDDADAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 287 ALEDNLTHMAESDDELQSMLDQ--------------YKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYE 352
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEEcrvaaqahneeaesLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 353 AQKEQYDRQLVQRETLIKEAAKRHDIRGYDYDITDKQVADFKQILSKM--SRDQNRALERARQ--ESQKDLKEAQ--DDL 426
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAreRVEEAEALLEAGKcpECGQPVEGSPhvETI 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 427 NQLNTRKSGASQSKESARSQIANNDKRI---SDLQKAMVQIKAdegsevvLQDKKRDTEEQL--QNASAASSSERYEERV 501
Cdd:PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLeraEDLVEAEDRIER-------LEERREDLEELIaeRRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 502 QEASNNMRTLEDKKERLTNELGEATKQAKESASIDYARNELQSAQHSLTTMKKV------HNERISELVDSDWDPATLET 575
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLlaaiadAEDEIERLREKREALAELND 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 576 SYQQTLSEKASKVKEATSRRD---ISQSKLDKINF-----QLSSLESQLKKKRSELRQYEQTVTKAIQ-----RDDISDF 642
Cdd:PRK02224 624 ERRERLAEKRERKRELEAEFDearIEEAREDKERAeeyleQVEEKLDELREERDDLQAEIGAVENELEeleelRERREAL 703
|
490
....*....|....*.
gi 169621967 643 NETLEQLEADYEGVST 658
Cdd:PRK02224 704 ENRVEALEALYDEAEE 719
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
221-816 |
5.85e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 221 KSQTRQAELYDAIETLRKEYvvideevtEAQEKAREAYDHSVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDD 300
Cdd:COG1196 206 ERQAEKAERYRELKEELKEL--------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 301 ELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKRhdirg 380
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE----- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 381 ydYDITDKQVADFKQILskmsrdqnRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKA 460
Cdd:COG1196 353 --LEEAEAELAEAEEAL--------LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 461 MVQIKADEGSEVVLQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDYARN 540
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 541 ELQSAQHSLTTMKKVHNERISELVDSD-WDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINfQLSSLESQLKKK 619
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLiGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA-KAGRATFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 620 RSELRQYEQTVTKAIQRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESARKHNVCRLCERELHDDRSQ-KF 698
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAgGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 699 TIEGFYSKLESIIAKAESAMKGENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSI 778
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....*...
gi 169621967 779 VHELEAERQEVESMSKEVQSIVGYYNKVHELEVQIKDL 816
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-936 |
8.94e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 326 EYADLKDALEVTRESLGVKQSEigKYEAQKEQYDRQLVQRETLIKEAAKRHdirgydyditdkqvadfkqilskmsRDQN 405
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAEL-------------------------AELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 406 RALERARQES---QKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKAdegsevvlQDKKRDTE 482
Cdd:COG1196 267 AELEELRLELeelELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE--------ELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 483 EQLQNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDYARNELQSAQHSLTTMKKVHNERISE 562
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 563 LvdsdwdpATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAIQRDDISDF 642
Cdd:COG1196 419 L-------EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 643 NE-TLEQLEADYEGVSTDAAKFAANAEymrsclesarKHNVCRLCERELHDDRsqkftiegfysKLESIIAKAESAMKGE 721
Cdd:COG1196 492 RLlLLLEAEADYEGFLEGVKAALLLAG----------LRGLAGAVAVLIGVEA-----------AYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 722 NPEELLEELEQARNakpsYELALRL-RDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHEL--EAERQEVESMSKEVQS 798
Cdd:COG1196 551 IVVEDDEVAAAAIE----YLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLreADARYYVLGDTLLGRT 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 799 IV-------GYYNKVHELEVQIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSV 871
Cdd:COG1196 627 LVaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169621967 872 RDINAELNNAQSKLKEKRALGARIEEfktENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRR 936
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA---EREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1200-1272 |
9.59e-08 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 53.02 E-value: 9.59e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidmrrKQSNFQLVVITHDETFL 1272
Cdd:cd00267 82 SGGQRQ------RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-----AEEGRTVIIVTHDPELA 143
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
812-1062 |
1.73e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 812 QIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLkekRAL 891
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE---YEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 892 GARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEEitayiqr 971
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA------- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 972 ggpeqLARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDNL-RYRKAKRSLET--LQADIEKLEAH 1048
Cdd:COG1196 367 -----LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLeRLEEELEELEEalAELEEEEEEEE 441
|
250
....*....|....
gi 169621967 1049 GAERDQAHYTREAK 1062
Cdd:COG1196 442 EALEEAAEEEAELE 455
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1200-1274 |
2.32e-07 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 51.30 E-value: 2.32e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLsqiidmrrkqSNFQ--LVVITHDETFLSA 1274
Cdd:cd03221 72 SGGEKM------RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----------KEYPgtVILVSHDRYFLDQ 132
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
265-951 |
2.51e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 265 SRIVNDLEfkrTTFDANKQSVAALEDNLTHM-AESDDELQSMLDQYKQRVETYATqndEHRHEYADLKDALEVTRESLGV 343
Cdd:pfam15921 223 SKILRELD---TEISYLKGRIFPVEDQLEALkSESQNKIELLLQQHQDRIEQLIS---EHEVEITGLTEKASSARSQANS 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 344 KQSEIgkyeaqkeqydrqlvqreTLIKEAAKRHDirgydyDITDKQVADFKQILSKMS---RDQNRALERARQESQKDLK 420
Cdd:pfam15921 297 IQSQL------------------EIIQEQARNQN------SMYMRQLSDLESTVSQLRselREAKRMYEDKIEELEKQLV 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 421 EAQDDLNQLNTRKSGASQSKESARSQIannDKRISDLQKAMVQIKADEGSEVVLQDkkRDTEEQLQNASAASSSERYEER 500
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQL---QKLLADLHKREKELSLEKEQNKRLWD--RDTGNSITIDHLRRELDDRNME 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 501 VQEASNNMRTLEDkkerltnelgEATKQAKESASIDYARNELQSAQHSLTTMKKVHNERISELVDS-DWDPATLETSyQQ 579
Cdd:pfam15921 428 VQRLEALLKAMKS----------ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEElTAKKMTLESS-ER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 580 TLSEKASKVKEATSRRDISQSKLDKI--NFQLSSLESQLKKKRSELRQYEQTVTKAIqRDDISDFNETLEQLEADYEGVS 657
Cdd:pfam15921 497 TVSDLTASLQEKERAIEATNAEITKLrsRVDLKLQELQHLKNEGDHLRNVQTECEAL-KLQMAEKDKVIEILRQQIENMT 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 658 TDAAKFAANAEYMRscLESARkhnvcrlCERELHDDRSQkftiegfYSKLESIIAKAESAMKgenpeelleeleqarnak 737
Cdd:pfam15921 576 QLVGQHGRTAGAMQ--VEKAQ-------LEKEINDRRLE-------LQEFKILKDKKDAKIR------------------ 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 738 psyELALRLRDTEIPalQIDMSKLTSERENVNKQL-EDQDSIVHELEAERQEVESMSKEVQSIV-GYYNKVHELEVQIKD 815
Cdd:pfam15921 622 ---ELEARVSDLELE--KVKLVNAGSERLRAVKDIkQERDQLLNEVKTSRNELNSLSEDYEVLKrNFRNKSEEMETTTNK 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 816 LAQKQKTAglSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSK---LK-EKRAL 891
Cdd:pfam15921 697 LKMQLKSA--QSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKeEKNKL 774
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 169621967 892 GARIEEFKTENNK---QRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKL 951
Cdd:pfam15921 775 SQELSTVATEKNKmagELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
496-1156 |
4.47e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 4.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 496 RYEERVQEASNNMRTLEDKKERLTNELGEATKQ-----AKESASIDYA--RNELQSAQHSLTTMKKVH--------NERI 560
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLDRLEDILNELERQlksleRQAEKAERYKelKAELRELELALLVLRLEElreeleelQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 561 SELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKA------- 633
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqleel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 634 -----IQRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESARKHnvcrlcerelhddrsqkftIEGFYSKLE 708
Cdd:TIGR02168 329 eskldELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ-------------------LETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 709 SIIAKAESAMKGENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQE 788
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 789 VESMSKEVQSivgYYNKVHELEVQIKDL-AQKQKTAGLSRGIDAV---QSDLKTITD---DSRNARNVLEQ-LTAARDKS 860
Cdd:TIGR02168 470 LEEAEQALDA---AERELAQLQARLDSLeRLQENLEGFSEGVKALlknQSGLSGILGvlsELISVDEGYEAaIEAALGGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 861 RNHI--TSLELSVRDINAELNNAQSK---LKEKRALGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQA-QYKYDDIn 934
Cdd:TIGR02168 547 LQAVvvENLNAAKKAIAFLKQNELGRvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlSYLLGGV- 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 935 rRGNERVQRAHDEASKLSDSLRQLSQADEEITA-YIQRGGPEQ-----LARThREIENLQGDLARVESEMMDVMRKIKKI 1008
Cdd:TIGR02168 626 -LVVDDLDNALELAKKLRPGYRIVTLDGDLVRPgGVITGGSAKtnssiLERR-REIEELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1009 EDSVRDVE-----MTKRSISDNLRYRKAKRSLETLQADIEKLEAHGA--ERDQAHYTREAKHWDDQYHSLNTTKTSIERD 1081
Cdd:TIGR02168 704 RKELEELEeeleqLRKELEELSRQISALRKDLARLEAEVEQLEERIAqlSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1082 MKNKDDQLTELM----------KEYEDIYQNADHQYKEAHLKVETTKAAIEDLGRYAGALDKAIMQyHTLKMEEINRIIA 1151
Cdd:TIGR02168 784 IEELEAQIEQLKeelkalrealDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-LSEDIESLAAEIE 862
|
....*
gi 169621967 1152 ELWTN 1156
Cdd:TIGR02168 863 ELEEL 867
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
3-88 |
7.41e-07 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 53.08 E-value: 7.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 3 RIDRLMIQGIRSFgpeRGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKTggaflHD-PKLQDEKEIMAQV 81
Cdd:COG3593 2 KLEKIKIKNFRSI---KDLSIELSDDLTVLVGENNSGKSSILEALRLLLGPSSSRKFDE-----EDfYLGDDPDLPEIEI 73
|
....*..
gi 169621967 82 KLSFRST 88
Cdd:COG3593 74 ELTFGSL 80
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
3-50 |
1.06e-06 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 51.92 E-value: 1.06e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 169621967 3 RIDRLMIQGIRSFgpeRGETIKFD--PPLTLIVGWNGSGKTTIIECLRYA 50
Cdd:COG3950 2 RIKSLTIENFRGF---EDLEIDFDnpPRLTVLVGENGSGKTTLLEAIALA 48
|
|
| RloC |
COG4694 |
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]; |
1-447 |
1.41e-06 |
|
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443729 [Multi-domain] Cd Length: 692 Bit Score: 52.82 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1 MSRIDRlmIQGIRSFGPERgeTIKFDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKTGGAFLHDpKLQDEKEIM-- 78
Cdd:COG4694 2 ITKIKK--LKNVGAFKDFG--WLAFFKKLNLIYGENGSGKSTLSRILRSLELGDTSSEVIAEFEIEAG-GSAPNPSVRvf 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 79 --AQVKLSFRSTSGVRMVAT-RSMQVTVKKTGRSQKTLEGSLLMKKDTENHSISTRVAELDQIIPQYLGVPKAILDNVIF 155
Cdd:COG4694 77 nrDFVEENLRSGEEIKGIFTlGEENIELEEEIEELEKEIEDLKKELDKLEKELKEAKKALEKLLEDLAKSIKDDLKKLFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 156 CHQED----------STWPLSDATTLKKKFDEIF--EAMKYTKAIDNIKMIRKNRNIqlgqLKIIEGHAKEDKSRAFKSQ 223
Cdd:COG4694 157 SSGRNyrkanlekklSALKSSSEDELKEKLKLLKeeEPEPIAPITPLPDLKALLSEA----ETLLEKSAVSSAIEELAAL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 224 TRQAELYDAIETLRKEYVVIDEEVTE--AQEKAREAYDH-----SVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMA 296
Cdd:COG4694 233 IQNPGNSDWVEQGLAYHKEEEDDTCPfcQQELAAERIEAleayfDDEYEKLLAALKDLLEELESAINALSALLLEILRTL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 297 --ESDDELQSMLDQYKQRVETYATQNDEHRheyADLKDALEVTRESLGVK-QSEIGKYEAQKEQYDRQLVQRETLIKEAA 373
Cdd:COG4694 313 lpSAKEDLKAALEALNALLETLLAALEEKI---ANPSTSIDLDDQELLDElNDLIAALNALIEEHNAKIANLKAEKEEAR 389
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169621967 374 KrhdirgydyDITDKQVADFKQILSKMSRDQNRALEraRQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQI 447
Cdd:COG4694 390 K---------KLEAHELAELKEDLSRYKAEVEELIE--ELKTIKALKKALEDLKTEISELEAELSSVDEAADEI 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
407-666 |
1.52e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 407 ALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMvqikadegsevvlqdkkRDTEEQLQ 486
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI-----------------RALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 487 NAsaassseryEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDYAR-----NELQSAQHSLTTMKKVHNERIS 561
Cdd:COG4942 80 AL---------EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 562 ELVDSDWDPATLETSyQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQyeQTVTKAIQRDDISD 641
Cdd:COG4942 151 QAEELRADLAELAAL-RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA--ELAELQQEAEELEA 227
|
250 260
....*....|....*....|....*
gi 169621967 642 FNETLEQLEADyEGVSTDAAKFAAN 666
Cdd:COG4942 228 LIARLEAEAAA-AAERTPAAGFAAL 251
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1200-1283 |
2.18e-06 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 50.16 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidmrrKQSNFQLVVITHDETFLsamncSE 1279
Cdd:cd03225 136 SGGQKQ------RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-----KAEGKTIIIVTHDLDLL-----LE 199
|
....
gi 169621967 1280 YADH 1283
Cdd:cd03225 200 LADR 203
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
451-1016 |
4.33e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 451 DKRISDLQKamvQIKADEGSEVVLQDKKRDTEEQLQNASAASSSER-YEERVQEASNNMRTLEDKKERLTNELGEATKQA 529
Cdd:PRK03918 175 KRRIERLEK---FIKRTENIEELIKEKEKELEEVLREINEISSELPeLREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 530 KESASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDP---ATLETSYQQTLSEKASKVKEA---TSRRDISQSKLD 603
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAeeyIKLSEFYEEYLDELREIEKRLsrlEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 604 KINFQLSSLESQLKKKRSELRQYEQTVTKAIQRDDISDFNETLEQLEADYEGVSTDaakfaaNAEYMRSCLESARKHnvc 683
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE------KLEKELEELEKAKEE--- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 684 rlCERELHDDRSQKFTIEGFYSKLESIIAKAESAmKGENPEELLEELEQAR-NAKPSYELALRLRDTEIPALQIDMSKLT 762
Cdd:PRK03918 403 --IEEEISKITARIGELKKEIKELKKAIEELKKA-KGKCPVCGRELTEEHRkELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 763 SERENVNKQLEDQDsivhELEAERQEVESMsKEVQSIVGYYNkVHELEVQIKDLAQ-KQKTAGLSRGIDAVQSDLKTITD 841
Cdd:PRK03918 480 KELRELEKVLKKES----ELIKLKELAEQL-KELEEKLKKYN-LEELEKKAEEYEKlKEKLIKLKGEIKSLKKELEKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 842 DSRNARNVLEQLTAARDKSRNHITSLE----LSVRDINAEL----------NNAQSKLKEKRALGARIEEFKTENNKQRE 907
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEelgfESVEELEERLkelepfyneyLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 908 LIRGYDKDIEGLVPEIEQAQYKYDDinrrgnERVQRAHDEASKLSdslRQLSQADEEItayiqrggpEQLARTHREIENL 987
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSE------EEYEELREEYLELS---RELAGLRAEL---------EELEKRREEIKKT 695
|
570 580
....*....|....*....|....*....
gi 169621967 988 QGDLARVESEMMDVMRKIKKIEDSVRDVE 1016
Cdd:PRK03918 696 LEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
4-50 |
5.14e-06 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 48.62 E-value: 5.14e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 169621967 4 IDRLMIQGIRSFGPErgETIKFDPPLTLIVGWNGSGKTTIIECLRYA 50
Cdd:cd03278 1 LKKLELKGFKSFADK--TTIPFPPGLTAIVGPNGSGKSNIIDAIRWV 45
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1197-1274 |
6.48e-06 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 48.63 E-value: 6.48e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169621967 1197 GRCSAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESlsqiidMRRKQSNFQLVVI-THDETFLSA 1274
Cdd:COG4133 130 RQLSAGQKR------RVALARLLLSPAPLWLLDEPFTALDAAGVALLAEL------IAAHLARGGAVLLtTHQPLELAA 196
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1199-1273 |
9.71e-06 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 48.02 E-value: 9.71e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169621967 1199 CSAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIIDMRRKqsnfqLVVITHDETFLS 1273
Cdd:cd03226 127 LSGGQKQ------RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA-----VIVITHDYEFLA 190
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-1004 |
1.12e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 356 EQYDRQLVQRETLIKEAAKRHDIRGYdydITDKQVADFKQILSKMSRDQNRALERARQESQkdlkeAQDDL-NQLNTRKS 434
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKF---YLRQSVIDLQTKLQEMQMERDAMADIRRRESQ-----SQEDLrNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 435 GASQSKESARSQIANNDKRISDLQKAMVQikadegSEVVLQDkkrdTEEQLQNASAASSSERYEErvqeasNNMRTLEDK 514
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLS------HEGVLQE----IRSILVDFEEASGKKIYEH------DSMSTMHFR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 515 KerltneLGEA-TKQAKE-SASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLETSYQQT----LSEKASkv 588
Cdd:pfam15921 217 S------LGSAiSKILRElDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVeitgLTEKAS-- 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 589 kEATSRRDISQSKLDKINFQ-----------LSSLESQLKKKRSELRQyeqtvTKAIQRDDISDFNETLEQLEADYEGVS 657
Cdd:pfam15921 289 -SARSQANSIQSQLEIIQEQarnqnsmymrqLSDLESTVSQLRSELRE-----AKRMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 658 TDAAKFAANAEYMRSCLE-------------SARKHNVCRLCERELH------------DDRSQKFT-----IEGFYSKL 707
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQklladlhkrekelSLEKEQNKRLWDRDTGnsitidhlrrelDDRNMEVQrlealLKAMKSEC 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 708 ESIIAKAESAMKGENPEELLEELEQAR------------------------NAKPSYELALRLRDTEiPALQIDMSKLTS 763
Cdd:pfam15921 443 QGQMERQMAAIQGKNESLEKVSSLTAQlestkemlrkvveeltakkmtlesSERTVSDLTASLQEKE-RAIEATNAEITK 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 764 ERENVNKQLEDQDSIVHElEAERQEVESMSKEVQSIVGYYNKVHE-LEVQIKDLAQKQKTAGLSRGidAVQSDLKTITDD 842
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEiLRQQIENMTQLVGQHGRTAG--AMQVEKAQLEKE 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 843 SRNARNVLEQLTAARDKSRNHITSLELSVRDINAE----LNNAQSKLKEKRALGARIEEFKTENNKQRELIRGYDKDIEG 918
Cdd:pfam15921 599 INDRRLELQEFKILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEV 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 919 LVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAyIQRGGPEQLARTHREIENLQGDLARVESEM 998
Cdd:pfam15921 679 LKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK-VAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
|
....*.
gi 169621967 999 MDVMRK 1004
Cdd:pfam15921 758 TNANKE 763
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
195-672 |
2.26e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 195 RKNRNIQLGQLKIIEGHAKEDKS-------------RAFKSQTRQAE-LY-DAIETLRKEYVVIDEEVTEAQEK----AR 255
Cdd:pfam15921 291 RSQANSIQSQLEIIQEQARNQNSmymrqlsdlestvSQLRSELREAKrMYeDKIEELEKQLVLANSELTEARTErdqfSQ 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 256 EAYDHSVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYK---QRVET-YATQNDEHRHEYADLK 331
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNmevQRLEAlLKAMKSECQGQMERQM 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 332 DALEVTRESLGVKQSEIGKYEAQKEQYdRQLVQRETlikeaAKRHDIRGYDYDITDkqvadfkqiLSKMSRDQNRALERA 411
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEML-RKVVEELT-----AKKMTLESSERTVSD---------LTASLQEKERAIEAT 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 412 RQESQKDLKEAQDDLNQLNTRKSGASQSK------ESARSQIANNDKRISDLQKA---MVQIKADEGSEV-VLQDKKRDT 481
Cdd:pfam15921 516 NAEITKLRSRVDLKLQELQHLKNEGDHLRnvqtecEALKLQMAEKDKVIEILRQQienMTQLVGQHGRTAgAMQVEKAQL 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 482 EEQLQNASAASSS-----ERYEERVQEASNNMRTLEDKKERLTNELGE---ATKQAKESA-----SIDYARNELQSAQHS 548
Cdd:pfam15921 596 EKEINDRRLELQEfkilkDKKDAKIRELEARVSDLELEKVKLVNAGSErlrAVKDIKQERdqllnEVKTSRNELNSLSED 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 549 LTTMKKVHNERISELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQ 628
Cdd:pfam15921 676 YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEE 755
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 169621967 629 TVTKAIQRDDIsdFNETLEQLEADYEGVSTDAAKFAANAEYMRS 672
Cdd:pfam15921 756 AMTNANKEKHF--LKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
208-858 |
3.09e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 208 IEGHAKEDKSRAFKSQTRQAELYDAIETLRKeyvvIDEEVTEAQEKAREAYDHSVRYSRIVNDLEFKRttfDANKQSVAA 287
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKL---DELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 288 LEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRET 367
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 368 LIKEAAKRHDIRgyDYDITDKQVADFKQILSKMS---RDQNRALERARQE---SQKDLKEAQDDLNQLNTRKSGASQSKE 441
Cdd:TIGR02168 422 EIEELLKKLEEA--ELKELQAELEELEEELEELQeelERLEEALEELREEleeAEQALDAAERELAQLQARLDSLERLQE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 442 SARS------QIANNDKRISDLQKAMVQ-IKADEGSE--------------VV--LQDKKRDTEEQLQNASAASS----S 494
Cdd:TIGR02168 500 NLEGfsegvkALLKNQSGLSGILGVLSElISVDEGYEaaieaalggrlqavVVenLNAAKKAIAFLKQNELGRVTflplD 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 495 ERYEERVQEASNNMRTLEDKKERLTNELGEATKQAkeSASIDYA------RNELQSAQHSLTTMKkvHNERI----SELV 564
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL--RKALSYLlggvlvVDDLDNALELAKKLR--PGYRIvtldGDLV 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 565 DSDW-------DPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVT------ 631
Cdd:TIGR02168 656 RPGGvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISalrkdl 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 632 ---------------------------KAIQRDDISDFNETL-------EQLEADYEGVSTDAAKF-----AANAEYMRS 672
Cdd:TIGR02168 736 arleaeveqleeriaqlskelteleaeIEELEERLEEAEEELaeaeaeiEELEAQIEQLKEELKALrealdELRAELTLL 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 673 CLESARKHNVCRLCERELHDDRSQKFTIEGFYSKLESIIAKAESAMK--GENPEELLEELEQARNAKPSYELALRLrdte 750
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEelEELIEELESELEALLNERASLEEALAL---- 891
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 751 ipalqidmskLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQsivgyyNKVHELEVQIKDLaQKQKTAGLSRGID 830
Cdd:TIGR02168 892 ----------LRSELEELSEELRELESKRSELRRELEELREKLAQLE------LRLEGLEVRIDNL-QERLSEEYSLTLE 954
|
730 740
....*....|....*....|....*...
gi 169621967 831 AVQSDLKTITDDSRNARNVLEQLTAARD 858
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1190-1269 |
3.82e-05 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 48.05 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1190 DTEMDMRGR-CSAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDqqnikglAESLSQIID-MRRKQSNFQLVVITH 1267
Cdd:TIGR02857 449 DTPIGEGGAgLSGGQAQ------RLALARAFLRDAPLLLLDEPTAHLD-------AETEAEVLEaLRALAQGRTVLLVTH 515
|
..
gi 169621967 1268 DE 1269
Cdd:TIGR02857 516 RL 517
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
164-1118 |
3.95e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.51 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 164 PLSDATTLKKKFDEIFEamKYTKAIDNIKMIRKNRNiQLGQLKIIEGHAKEdksraFKSQTRQAELY--DAIETLRKEYV 241
Cdd:TIGR01612 457 PKSKLKALEKRFFEIFE--EEWGSYDIKKDIDENSK-QDNTVKLILMRMKD-----FKDIIDFMELYkpDEVPSKNIIGF 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 242 VIDEEV-----TEAQEKAREAYDHSVRYSRIVndLEFKRTTFDANKQSV---AALEDNLTHMAESDDE---LQSMLDQYK 310
Cdd:TIGR01612 529 DIDQNIkaklyKEIEAGLKESYELAKNWKKLI--HEIKKELEEENEDSIhleKEIKDLFDKYLEIDDEiiyINKLKLELK 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 311 QRVETYATQNdEHRHEYADLKDALEvtreslgvkqseigkyeaqkeqydrqlvQRETLIKEAAKRHDIRGYDY-DITDKQ 389
Cdd:TIGR01612 607 EKIKNISDKN-EYIKKAIDLKKIIE----------------------------NNNAYIDELAKISPYQVPEHlKNKDKI 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 390 VADFKQILSKMSRDQnraLERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEG 469
Cdd:TIGR01612 658 YSTIKSELSKIYEDD---IDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNEL 734
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 470 SEVVLQDKKRDTEEQlqNASAASSSERYEERVQEASNNMRTLEDKKERLT---NELGEATKQAKESASIDYARNE--LQS 544
Cdd:TIGR01612 735 LDIIVEIKKHIHGEI--NKDLNKILEDFKNKEKELSNKINDYAKEKDELNkykSKISEIKNHYNDQINIDNIKDEdaKQN 812
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 545 AQHSLTTMK--KVHNERISELVDsdwdpatlETSYQQtlSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSE 622
Cdd:TIGR01612 813 YDKSKEYIKtiSIKEDEIFKIIN--------EMKFMK--DDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISD 882
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 623 --LRQYEQTVTkaiqrDDISDFNETLEQLEADYEGVSTdaakFAANAEYMRSClesarkhnvcrlcerelhddRSQKFTI 700
Cdd:TIGR01612 883 dkLNDYEKKFN-----DSKSLINEINKSIEEEYQNINT----LKKVDEYIKIC--------------------ENTKESI 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 701 EGFYSK---LESIIAKAESAMKGENPEElleeleqaRNAKPSYELALRLRDTEIPALQIDMSKLTSE------------- 764
Cdd:TIGR01612 934 EKFHNKqniLKEILNKNIDTIKESNLIE--------KSYKDKFDNTLIDKINELDKAFKDASLNDYEaknnelikyfndl 1005
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 765 RENVNK--------QLEDQDSIVHELEaerQEVESMSKEVQSI-VGYYNKVHELEVQIKDLaqkqktagLSRGIDAVQSD 835
Cdd:TIGR01612 1006 KANLGKnkenmlyhQFDEKEKATNDIE---QKIEDANKNIPNIeIAIHTSIYNIIDEIEKE--------IGKNIELLNKE 1074
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 836 -LKTITDDSRNARNVLEQLT---------AARDKSRNHITSLELSVRDINAELNNAQSKLKE-KRALGARIEEFKTENNK 904
Cdd:TIGR01612 1075 iLEEAEINITNFNEIKEKLKhynfddfgkEENIKYADEINKIKDDIKNLDQKIDHHIKALEEiKKKSENYIDEIKAQIND 1154
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 905 QREL---------IRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEAS---------KLSDSLRQ--LSQADEE 964
Cdd:TIGR01612 1155 LEDVadkaisnddPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSleevkginlSYGKNLGKlfLEKIDEE 1234
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 965 ----------ITAYIQrgGPEQLARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDnLRyrkaKRS 1034
Cdd:TIGR01612 1235 kkksehmikaMEAYIE--DLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISD-IR----EKS 1307
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1035 LETLQADIEKLEAHGAERDQAHYTREA-KHWDD--QYHSLNTTKTSIER--DMKNKDDQLTELMKEYEDIYQNADHQYKE 1109
Cdd:TIGR01612 1308 LKIIEDFSEESDINDIKKELQKNLLDAqKHNSDinLYLNEIANIYNILKlnKIKKIIDEVKEYTKEIEENNKNIKDELDK 1387
|
....*....
gi 169621967 1110 AHLKVETTK 1118
Cdd:TIGR01612 1388 SEKLIKKIK 1396
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
402-998 |
4.70e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 402 RDQNRALERArqESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDT 481
Cdd:PRK02224 183 SDQRGSLDQL--KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 482 EEqLQNASAASSSERYE--ERVQEASnnmRTLEDKKERLTNELGEATKQAKESASIDYARNELQSAQHSLttmkkvhNER 559
Cdd:PRK02224 261 ED-LRETIAETEREREElaEEVRDLR---ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-------RDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 560 ISELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKA-IQRDD 638
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDApVDLGN 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 639 ISDFnetLEQLEADYEGVSTDAAKFAANAEYMRSCLESARK---HNVCRLCERELHD---------DRSQKFTIEGFYSK 706
Cdd:PRK02224 410 AEDF---LEELREERDELREREAELEATLRTARERVEEAEAlleAGKCPECGQPVEGsphvetieeDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 707 LESIIAKAESAMkgENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVnkqlEDQDSIVHELEAER 786
Cdd:PRK02224 487 LEEEVEEVEERL--ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERA----AELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 787 QEVESMSKEVQSIVGYYN-KVHELEVQIKDLAQkqktaglsrgIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHIT 865
Cdd:PRK02224 561 AEAEEEAEEAREEVAELNsKLAELKERIESLER----------IRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 866 SLELSVRDINAELNnaqsklkekralGARIEEFKteNNKQRelirgYDKDIEGLVPEIEQAQYKYDDInrrgnervqraH 945
Cdd:PRK02224 631 EKRERKRELEAEFD------------EARIEEAR--EDKER-----AEEYLEQVEEKLDELREERDDL-----------Q 680
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 169621967 946 DEASKLSDSLRQLSQADEEITAYIQRggPEQLARTHREIENLQGDLARVESEM 998
Cdd:PRK02224 681 AEIGAVENELEELEELRERREALENR--VEALEALYDEAEELESMYGDLRAEL 731
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
3-48 |
6.40e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 46.85 E-value: 6.40e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 169621967 3 RIDRLMIQGIRSFgpeRGETIKFDPpLTLIVGWNGSGKTTIIECLR 48
Cdd:COG4637 1 MITRIRIKNFKSL---RDLELPLGP-LTVLIGANGSGKSNLLDALR 42
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
354-642 |
7.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 7.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 354 QKEQYDRQLVQRETLIK-EAAKRHDIrgydyditDKQVADFKQiLSKMSRDQNRALERARQESQK--------------- 417
Cdd:pfam17380 304 EKEEKAREVERRRKLEEaEKARQAEM--------DRQAAIYAE-QERMAMERERELERIRQEERKrelerirqeeiamei 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 418 ----DLKEAQDDLNQLNTRksgASQSKESARSQIANNDKRISDLQKAMVQIKADEGSevvlQDKKRDTEEQLQNASAASS 493
Cdd:pfam17380 375 srmrELERLQMERQQKNER---VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE----QEEARQREVRRLEEERARE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 494 SERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDP--- 570
Cdd:pfam17380 448 MERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEErqk 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 571 ATLETSYQQTLSEKASKVKEATSRRDIsQSKLDKINFQLSSLESqLKKKRSELRQYEQ--------------TVTKAIQR 636
Cdd:pfam17380 528 AIYEEERRREAEEERRKQQEMEERRRI-QEQMRKATEERSRLEA-MEREREMMRQIVEsekaraeyeattpiTTIKPIYR 605
|
....*.
gi 169621967 637 DDISDF 642
Cdd:pfam17380 606 PRISEY 611
|
|
| RecF |
COG1195 |
Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; |
3-53 |
8.59e-05 |
|
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
Pssm-ID: 440808 [Multi-domain] Cd Length: 352 Bit Score: 46.30 E-value: 8.59e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 169621967 3 RIDRLMIQGIRSFgpeRGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTG 53
Cdd:COG1195 1 RLKRLSLTNFRNY---ESLELEFSPGINVLVGPNGQGKTNLLEAIYLLATG 48
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
406-1047 |
8.85e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 8.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 406 RALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSevvLQDKKRDTEEQL 485
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR---LEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 486 QNASAASssERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKESasidyarnelqsaqhslttmkkvhneriselvd 565
Cdd:COG1196 312 RELEERL--EELEEELAELEEELEELEEELEELEEELEEAEEELEEA--------------------------------- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 566 sdwdpatletsyQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAIQRddisdfnet 645
Cdd:COG1196 357 ------------EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER--------- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 646 LEQLEADYEGVSTDAAKFAANAEymrsclesarkhnvcrlceRELHDDRSQKFTIEGFYSKLESIIAKAESAMKgenpeE 725
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEE-------------------EEEEALEEAAEEEAELEEEEEALLELLAELLE-----E 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 726 LLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSIVGYYNK 805
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 806 VHELEVQIKDLAQKQKTAGLSRG-------IDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAEL 878
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRAtflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 879 NNAQSKLKEKRALGARIEefktennkqreliRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQL 958
Cdd:COG1196 632 LEAALRRAVTLAGRLREV-------------TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 959 SQADEEITAYIQRggpeqlARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDNLRYRKAKRSLETL 1038
Cdd:COG1196 699 LLAEEEEERELAE------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*....
gi 169621967 1039 QADIEKLEA 1047
Cdd:COG1196 773 EREIEALGP 781
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1190-1276 |
9.75e-05 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 46.67 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1190 DTEMDMRGRC-SAGQKVlaclviRLALAECFgtnCG---LIALDEPTTNLDQQNIKGLAESLSQIidmrrKQSNFQLVVI 1265
Cdd:COG4618 458 DTRIGEGGARlSGGQRQ------RIGLARAL---YGdprLVVLDEPNSNLDDEGEAALAAAIRAL-----KARGATVVVI 523
|
90
....*....|.
gi 169621967 1266 THDETFLSAMN 1276
Cdd:COG4618 524 THRPSLLAAVD 534
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
495-1289 |
9.99e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 9.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 495 ERYEERVQEASNNMRTLEDKKERLTNELgEATKQAKESASIDYARNELQSAQHSLTTMKKVHNERiselvdsdwdpatlE 574
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQL-KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ--------------R 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 575 TSYQQTLSEKASKVKEATSRRDisqskldkinfQLSSLESQLKKKRSELRQYEQTvtKAIQRDDISDFNETLEQLEADYE 654
Cdd:PRK02224 230 EQARETRDEADEVLEEHEERRE-----------ELETLEAEIEDLRETIAETERE--REELAEEVRDLRERLEELEEERD 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 655 GVSTDAAKFAANAEYM---RSCLESARKHnvcrlCERELHDDRSQkftIEGFYSKLESIIAKA-----ESAMKGENPEEL 726
Cdd:PRK02224 297 DLLAEAGLDDADAEAVearREELEDRDEE-----LRDRLEECRVA---AQAHNEEAESLREDAddleeRAEELREEAAEL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 727 LEELEQARNAKPSYELALRLRDTEIPALQ-------IDMSKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSI 799
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRerfgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAL 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 800 VGYyNKVHELEVQIKDlaqkqktaglsrgidavQSDLKTITDDsrnaRNVLEQLTAARDKSRNHITSLELSVRDIN--AE 877
Cdd:PRK02224 449 LEA-GKCPECGQPVEG-----------------SPHVETIEED----RERVEELEAELEDLEEEVEEVEERLERAEdlVE 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 878 LNNAQSKLKEKR-ALGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQykyddinrrgnERVQRAHDEASKLSDSLR 956
Cdd:PRK02224 507 AEDRIERLEERReDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR-----------EAAAEAEEEAEEAREEVA 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 957 QLSQADEEITAYIQRggPEQLARTHREIENLQGDLARVESEMMDvmrkIKKIEDSVRDVEMTKRSISDNLRYRKAKRSLE 1036
Cdd:PRK02224 576 ELNSKLAELKERIES--LERIRTLLAAIADAEDEIERLREKREA----LAELNDERRERLAEKRERKRELEAEFDEARIE 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1037 TLQADIEKLEAHGAERDQAHYTREAKHwDDQYHSLNTTKTSIER--DMKNKDDQLTELMKEYEDIYQNADH-QYKEAHLK 1113
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKLDELREER-DDLQAEIGAVENELEEleELRERREALENRVEALEALYDEAEElESMYGDLR 728
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1114 VETTKAAIEDLGRYagaldkaimqyhtlkmeeINRIIAELWTN-AYQGTDVDTiriasdsdgkgnrqyNYRVVMSKQDTE 1192
Cdd:PRK02224 729 AELRQRNVETLERM------------------LNETFDLVYQNdAYSHIELDG---------------EYELTVYQKDGE 775
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1193 MDMRGRCSAGQKVLACLVIRLA----LAECFGTNCGL--IALDEPTTNLDQQNIKGLAEslsqIIDMRRKQSNFQLVVIT 1266
Cdd:PRK02224 776 PLEPEQLSGGERALFNLSLRCAiyrlLAEGIEGDAPLppLILDEPTVFLDSGHVSQLVD----LVESMRRLGVEQIVVVS 851
|
810 820
....*....|....*....|...
gi 169621967 1267 HDETFLSAmncseyADHYFRESK 1289
Cdd:PRK02224 852 HDDELVGA------ADDLVRVEK 868
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
256-810 |
1.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 256 EAYDHSVRYSRI-VND-LEFKRTTFDANKQSVAALEDNLTHmaESDDELQSMLDQYKQRVETYATQND---EHRHEYADL 330
Cdd:PRK02224 165 EEYRERASDARLgVERvLSDQRGSLDQLKAQIEEKEEKDLH--ERLNGLESELAELDEEIERYEEQREqarETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 331 KDALEVTRESLGVKQSEIGKYEAQKEQYDRQlvqRETLIKEAAKRHDIRGYDYDITDKQVADfkqilSKMSRDQNRALER 410
Cdd:PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETERE---REELAEEVRDLRERLEELEEERDDLLAE-----AGLDDADAEAVEA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 411 ARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQnasa 490
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE---- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 491 aSSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKE-SASIDYARNELQSAQHSLTTMKKVHNERISElvdsdwd 569
Cdd:PRK02224 391 -EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAElEATLRTARERVEEAEALLEAGKCPECGQPVE------- 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 570 patlETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLES--QLKKKRSELRQYEQTVTK--AIQRDDISDFNET 645
Cdd:PRK02224 463 ----GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEEliAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 646 LEQLEADYEGVSTDAAKFAANAEYMRSCLESARKhnVCRLCER---ELHDDRSQKFTIEGFYSKLESIIAKAES-----A 717
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEARE--EVAELNSklaELKERIESLERIRTLLAAIADAEDEIERlrekrE 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 718 MKGENPEELLEELEQARNAKPsyELALRLRDTEIPALQIDMSKLTSERENVNKQLED--------QDSI------VHELE 783
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKR--ELEAEFDEARIEEAREDKERAEEYLEQVEEKLDElreerddlQAEIgaveneLEELE 694
|
570 580
....*....|....*....|....*..
gi 169621967 784 AERQEVESMSKEVQSIVGYYNKVHELE 810
Cdd:PRK02224 695 ELRERREALENRVEALEALYDEAEELE 721
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
402-622 |
1.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 402 RDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADegsevvLQDKKRDT 481
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE------LEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 482 EEQLQNASAASSSERYE-----ERVQEASNNMRTLEDKKERLTNELGEATKQAKESASIdyaRNELQSAQHSLTTMKKVH 556
Cdd:COG4942 107 AELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL---RAELEAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169621967 557 NERISELvdsdwdpATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSE 622
Cdd:COG4942 184 EEERAAL-------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
486-664 |
1.92e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 486 QNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKE-SASIDYARNELQSAQHSLTTMKKVH-------- 556
Cdd:PHA02562 207 QRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDpSAALNKLNTAAAKIKSKIEQFQKVIkmyekggv 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 557 -----------NERISELVDSDWDPAT---LETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSE 622
Cdd:PHA02562 287 cptctqqisegPDRITKIKDKLKELQHsleKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAA 366
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 169621967 623 LRQYEqtvtkaiqrDDISDFNETLEQLEADYEGVSTDAAKFA 664
Cdd:PHA02562 367 IEELQ---------AEFVDNAEELAKLQDELDKIVKTKSELV 399
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
208-558 |
2.24e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 208 IEGHAKEDKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVTEAqekarEAYDHSVRYSRivNDLEFKRTTFDANKQSVA- 286
Cdd:PRK02224 368 LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-----EDFLEELREER--DELREREAELEATLRTARe 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 287 ALEDNLTHMAE----------SDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEvTRESLGVKQSEIGKYEAQKE 356
Cdd:PRK02224 441 RVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDRIERLEERRE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 357 QYDRQLVQRETLIKE-----AAKRHDIRGYDYDITDKQ-VADFKQILSKMSRDQNRALERARQEsqkdLKEAQDDLNQLn 430
Cdd:PRK02224 520 DLEELIAERRETIEEkreraEELRERAAELEAEAEEKReAAAEAEEEAEEAREEVAELNSKLAE----LKERIESLERI- 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 431 trksgasqskESARSQIANNDKRISDLQKAMVQI--KADEGSEVV--LQDKKRDTEEQLQNA---SAASSSERYEERVQE 503
Cdd:PRK02224 595 ----------RTLLAAIADAEDEIERLREKREALaeLNDERRERLaeKRERKRELEAEFDEArieEAREDKERAEEYLEQ 664
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 169621967 504 ASNNMRTLEDKKERLTNELGEATKQAKESASIdyaRNELQSAQHSLTTMKKVHNE 558
Cdd:PRK02224 665 VEEKLDELREERDDLQAEIGAVENELEELEEL---RERREALENRVEALEALYDE 716
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
12-88 |
2.33e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.12 E-value: 2.33e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169621967 12 IRSFGPERGETIK--FDPPLTLIVGWNGSGKTTIIECLRYATTGDLPPhsktggafLHDPKLQDEKEIMAQVKLSFRST 88
Cdd:cd03227 4 LGRFPSYFVPNDVtfGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA--------TRRRSGVKAGCIVAAVSAELIFT 74
|
|
| RloC |
COG4694 |
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]; |
511-880 |
2.34e-04 |
|
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443729 [Multi-domain] Cd Length: 692 Bit Score: 45.50 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 511 LEDKKERLTNELGEA-TKQAKESASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLETSYQQTLSEKASKVK 589
Cdd:COG4694 104 LEEEIEELEKEIEDLkKELDKLEKELKEAKKALEKLLEDLAKSIKDDLKKLFASSGRNYRKANLEKKLSALKSSSEDELK 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 590 EATSRRDISQSKLDKINFQLSSLESQLKKKRSELRqyeqtvtKAIQRDDISDFNETLEQLEadyegvstdaakfaaNAEY 669
Cdd:COG4694 184 EKLKLLKEEEPEPIAPITPLPDLKALLSEAETLLE-------KSAVSSAIEELAALIQNPG---------------NSDW 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 670 MRSCLE--SARKHNVCRLCERELHDDRSQKF------TIEGFYSKLESIIAKAESAMKGENPEELLEELEQARNAKPSYE 741
Cdd:COG4694 242 VEQGLAyhKEEEDDTCPFCQQELAAERIEALeayfddEYEKLLAALKDLLEELESAINALSALLLEILRTLLPSAKEDLK 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 742 LALRLRDTEIPAL-------------------QIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVEsmsKEVQSIvgy 802
Cdd:COG4694 322 AALEALNALLETLlaaleekianpstsidlddQELLDELNDLIAALNALIEEHNAKIANLKAEKEEAR---KKLEAH--- 395
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169621967 803 ynKVHELEVQIKDLAQKQKTAglsrgidavQSDLKTITDdsrnARNVLEQLTAARDKSRNHITSLELSVRDINAELNN 880
Cdd:COG4694 396 --ELAELKEDLSRYKAEVEEL---------IEELKTIKA----LKKALEDLKTEISELEAELSSVDEAADEINEELKA 458
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
345-554 |
2.35e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 345 QSEIGKYEAQKEQYDRQLVQRETL--IKEAAKRHDIRGYDYDITDKQVADFKqilSKMSRDQNRALERARQESQKDLKEA 422
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIELLepIRELAERYAAARERLAELEYLRAALR---LWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 423 QDDLNQLNTRKSGASQSKESARSQIANND-KRISDLQKamvQIKADEGSEVVLQDKKRDTEEQLQNA--SAASSSERYEE 499
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGgDRLEQLER---EIERLERELEERERRRARLEALLAALglPLPASAEEFAA 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 169621967 500 RVQEASNNMRTLEDKKERLTNELGEATKQAKEsasidyARNELQSAQHSLTTMKK 554
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRD------LRRELRELEAEIASLER 433
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1190-1277 |
2.65e-04 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 45.13 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1190 DTEMDMRGRC-SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidMRRKqsnfQLVVITHD 1268
Cdd:COG4988 464 DTPLGEGGRGlSGGQAQ------RLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRL--AKGR----TVILITHR 531
|
....*....
gi 169621967 1269 ETFLSAMNC 1277
Cdd:COG4988 532 LALLAQADR 540
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
289-505 |
2.68e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 289 EDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAqkeqydrQLVQRETL 368
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEA-------EIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 369 IKEAAKRHDIRGYDYDITD-----KQVADF---KQILSKMSRDQNRALE---RARQESQKDLKEAQDDLNQLNTRKSGAS 437
Cdd:COG3883 88 LGERARALYRSGGSVSYLDvllgsESFSDFldrLSALSKIADADADLLEelkADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169621967 438 QSKESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQNASAASSSERYEERVQEAS 505
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1211-1273 |
2.99e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 43.08 E-value: 2.99e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169621967 1211 IRLALAECFGTNCG--LIALDEPTTNLDQQNIKGLAESLSQIIDmrrkQSNfQLVVITHDETFLS 1273
Cdd:cd03238 94 QRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLID----LGN-TVILIEHNLDVLS 153
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
759-1099 |
3.63e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 759 SKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKEVQSIVGYYNK-VHELEVQIKDLAQKQKTagLSRGIDAVQSDLK 837
Cdd:TIGR04523 99 NKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTeIKKKEKELEKLNNKYND--LKKQKEELENELN 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 838 TITDDSRNARNVLeqltaarDKSRNHITSLELSvrdinaeLNNAQSKLKEKRALGARIEEFKTENNKQRELIRGYDKDIE 917
Cdd:TIGR04523 177 LLEKEKLNIQKNI-------DKIKNKLLKLELL-------LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 918 GLVPEIEQAQYKY-------DDINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAYIQRGGPEQLARTHREIENLQGD 990
Cdd:TIGR04523 243 EKTTEISNTQTQLnqlkdeqNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 991 LARVESEMMDVMRKIKKIEDSVRDVEMTKR-SISDNLryrKAKRSLETLQADIEKLeahgaERDQAHYTREAKHWDDQYH 1069
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTnSESENS---EKQRELEEKQNEIEKL-----KKENQSYKQEIKNLESQIN 394
|
330 340 350
....*....|....*....|....*....|
gi 169621967 1070 SLNTTKTSIERDMKNKDDQLTELMKEYEDI 1099
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
353-1034 |
4.06e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 353 AQKEQYDRQLVQRETLIKEAAKRHDIRGYDYDITDKQVADFK-QILSKMSRDQNRALER---ARQESQKDLKEA----QD 424
Cdd:pfam12128 218 LNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRlSHLHFGYKSDETLIASrqeERQETSAELNQLlrtlDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 425 DLNQ----LNTRKSGASQSKESARSQIANNDKRISDLQKAMV-QIKADEGSEVVLQDKKRDTEEQL--QNASAASSSERY 497
Cdd:pfam12128 298 QWKEkrdeLNGELSAADAAVAKDRSELEALEDQHGAFLDADIeTAAADQEQLPSWQSELENLEERLkaLTGKHQDVTAKY 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 498 EERVQEAS-NNMRTLEDKKERLTNELGEATKQaKESASIDYA------RNELQSAQHSLTTMKKVHNERISEL-VDSDWD 569
Cdd:pfam12128 378 NRRRSKIKeQNNRDIAGIKDKLAKIREARDRQ-LAVAEDDLQaleselREQLEAGKLEFNEEEYRLKSRLGELkLRLNQA 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 570 PATLETSYQQTLSEkaskvkEATSRRDISQSKLDKINFQLSSLESQLKKKRSE----LRQYEQTVTKAIQRDD------I 639
Cdd:pfam12128 457 TATPELLLQLENFD------ERIERAREEQEAANAEVERLQSELRQARKRRDQaseaLRQASRRLEERQSALDelelqlF 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 640 SDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLE----SARKHNVCRLCERELHDDRSQKFTIEGFYSKLESIIAKAE 715
Cdd:pfam12128 531 PQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDpevwDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 716 SAMKGEnpeelleeleQARNAKPSYELALRlrDTEIPALQIDMSKLTSERENVNkqlEDQDSIVHELEAERQEVESMSKE 795
Cdd:pfam12128 611 EALQSA----------REKQAAAEEQLVQA--NGELEKASREETFARTALKNAR---LDLRRLFDEKQSEKDKKNKALAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 796 VQSIVGyyNKVHELEVQIKDLAQKQKTAglsrgidavqsdLKTITDDSRNARnvleqlTAARDKSRNHITSLELSVRDIN 875
Cdd:pfam12128 676 RKDSAN--ERLNSLEAQLKQLDKKHQAW------------LEEQKEQKREAR------TEKQAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 876 AELNNAQSKLKekralgARIEEFKTENnkQRELI-RGYDKD-IEGLVPEIEQAQYKYDDINRRGNErVQRAHDEASKLSD 953
Cdd:pfam12128 736 AAIAARRSGAK------AELKALETWY--KRDLAsLGVDPDvIAKLKREIRTLERKIERIAVRRQE-VLRYFDWYQETWL 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 954 SLRQLSQAdeeitayiqrggpeQLARTHREIENLQGDLARVESemmDVMRKIKKIEDSVRDVEMTKRSISDNLRYRKAKR 1033
Cdd:pfam12128 807 QRRPRLAT--------------QLSNIERAISELQQQLARLIA---DTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
.
gi 169621967 1034 S 1034
Cdd:pfam12128 870 S 870
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-414 |
4.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 211 HAKEDKSRA-------FKSQTRQAELYDAIETLRKEYVVIDEEVTEAQEKAREAYDHSVRYSRIVnDLEFKRTTFDANKQ 283
Cdd:COG4913 590 HEKDDRRRIrsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA-EYSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 284 SVAALEDNLTHMAESDDELQSMLDQYkqrvetyatqnDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLV 363
Cdd:COG4913 669 EIAELEAELERLDASSDDLAALEEQL-----------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 169621967 364 QRETLIKEAAKRHDIRGYDYDITDKQVADFKQILSKMSRDQNRALERARQE 414
Cdd:COG4913 738 AAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
743-1250 |
5.35e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 743 ALRLRDTEIPALQIDMSKLTSERENVNKQLEDQDsIVHELEAERQEVESMSKEVQSIVGYYNKVHELEVQIKDL------ 816
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLP-LYQELEALEAELAELPERLEELEERLEELRELEEELEELeaelae 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 817 AQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAEL--NNAQSKLKEKR----- 889
Cdd:COG4717 175 LQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELeaAALEERLKEARlllli 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 890 -ALGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHD----EASKLSDSLRQL----SQ 960
Cdd:COG4717 255 aAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleelEEEELEELLAALglppDL 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 961 ADEEITAYIQRGgpEQLARTHREIENLQGDLARVESEmmdvmRKIKKI--EDSVRDVEMTKRSISDNLRYRKAKRSLETL 1038
Cdd:COG4717 335 SPEELLELLDRI--EELQELLREAEELEEELQLEELE-----QEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1039 QADiekLEAHGAERDQAHYTREAKHWDDQYHSLNTTKTSIERDMKNKDDQLTEL---MKEYEDiyqnaDHQYKEAHLKVE 1115
Cdd:COG4717 408 EEQ---LEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELeaeLEQLEE-----DGELAELLQELE 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1116 TTKAAIEDLGRYAGA-------LDKAIMQYHTLK----MEEINRIIAELWTNAYQGtdvdtIRIASDSDGKGNRQYNYRV 1184
Cdd:COG4717 480 ELKAELRELAEEWAAlklalelLEEAREEYREERlppvLERASEYFSRLTDGRYRL-----IRIDEDLSLKVDTEDGRTR 554
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169621967 1185 VMSkqdtEMdmrgrcSAGQKVLACLVIRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQI 1250
Cdd:COG4717 555 PVE----EL------SRGTREQLYLALRLALAELLAGEPLPLILDDAFVNFDDERLRAALELLAEL 610
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
225-577 |
5.57e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 225 RQAELYDAIETLRKEYVVIDEEVTEAQEKAREAYDHSVRYSRIVNDLEFKRttfDANKQSVAALEDNLTHMAESDDELQS 304
Cdd:pfam07888 74 QRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQR---AAHEARIRELEEDIKTLTQRVLERET 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 305 MLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKRhdirgydYD 384
Cdd:pfam07888 151 ELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK-------LT 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 385 ITDKQVADFKQILSKMSRDQNRAleRARQESQKDLKEaqdDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQI 464
Cdd:pfam07888 224 TAHRKEAENEALLEELRSLQERL--NASERKVEGLGE---ELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREG 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 465 KADEGSE-VVLQDKKRDTEEQLQNASAAssSERYEERVQEASNNMRTLEDK--KERLTN--ELGEATKQAKE-SASIDYA 538
Cdd:pfam07888 299 RARWAQErETLQQSAEADKDRIEKLSAE--LQRLEERLQEERMEREKLEVElgREKDCNrvQLSESRRELQElKASLRVA 376
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 169621967 539 RNE---LQSAQHSLTTMKKVHNERISELVDSDW-DPATLETSY 577
Cdd:pfam07888 377 QKEkeqLQAEKQELLEYIRQLEQRLETVADAKWsEAALTSTER 419
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
402-652 |
5.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 402 RDQNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARsqianndkRISDLQKAMVQIKAdegsevvLQDKKRDT 481
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ--------RLAEYSWDEIDVAS-------AEREIAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 482 EEQLQNASAASSS-ERYEERVQEASNNMRTLEDKKERLTNELGEATKQakesasIDYARNELQSAQHSLttmkkvhnERI 560
Cdd:COG4913 674 EAELERLDASSDDlAALEEQLEELEAELEELEEELDELKGEIGRLEKE------LEQAEEELDELQDRL--------EAA 739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 561 SELVDSdWDPATLETSYQQTLSEKAskvkEATSRRDIsQSKLDKINFQLSSLESQLKKKRSE-LRQYE-QTVTKAIQRDD 638
Cdd:COG4913 740 EDLARL-ELRALLEERFAAALGDAV----ERELRENL-EERIDALRARLNRAEEELERAMRAfNREWPaETADLDADLES 813
|
250
....*....|....
gi 169621967 639 ISDFNETLEQLEAD 652
Cdd:COG4913 814 LPEYLALLDRLEED 827
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
817-1055 |
6.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 817 AQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELnnaqsklkekRALGARIE 896
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL----------AELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 897 EFKTENNKQRELIRgydkdieglvpEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAYIQRgGPEQ 976
Cdd:COG4942 94 ELRAELEAQKEELA-----------ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRA-DLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 977 LARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDV--EMTKRSISDNLRYRKAKRSLETLQADIEKLEAHGAERDQ 1054
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLlaRLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 169621967 1055 A 1055
Cdd:COG4942 242 R 242
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
527-1097 |
7.78e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 527 KQAKESASIDYARNELQSAQHSLTTMKKvhnerisELVDSDWDPATLETSYQQTLSEKASKVKeatSRRDISQSKLDKIN 606
Cdd:pfam12128 238 KIRPEFTKLQQEFNTLESAELRLSHLHF-------GYKSDETLIASRQEERQETSAELNQLLR---TLDDQWKEKRDELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 607 FQLSSLESQLKKKRSEL-------RQYEQ--TVTKAIQRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESA 677
Cdd:pfam12128 308 GELSAADAAVAKDRSELealedqhGAFLDadIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 678 RKHNVCRLCER--ELHDDRS-QKFTIEGFYSKLESIIAKAESAMKGENPEELLEELEQARNAK---------PSYELALR 745
Cdd:pfam12128 388 NNRDIAGIKDKlaKIREARDrQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlrlnqatatPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 746 LRDTEI--------------PALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVESM------------SKEVQSI 799
Cdd:pfam12128 468 NFDERIerareeqeaanaevERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtllhflRKEAPDW 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 800 VGYYNKV--------HELEVQIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSV 871
Cdd:pfam12128 548 EQSIGKVispellhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 872 RDINAELNNAQSKLKE-KRALGARIEEFKTENNKQRELIRGYDKDIEGlvpEIEQAQYKYDDIN--RRGNERVQRAHDEA 948
Cdd:pfam12128 628 VQANGELEKASREETFaRTALKNARLDLRRLFDEKQSEKDKKNKALAE---RKDSANERLNSLEaqLKQLDKKHQAWLEE 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 949 SKlsDSLRQLSQADEEITAYIQRGGPEQLARTHREIENLQGDLArvesemmdvmRKIKKIEDSvRDVEMTKRSIsDNLRY 1028
Cdd:pfam12128 705 QK--EQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK----------AELKALETW-YKRDLASLGV-DPDVI 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1029 RKAKRSLETLQADIEKLEAHGAErdQAHYTREAKH-WDDQYHSLNTTKTSIERDMKNKDDQLTELMKEYE 1097
Cdd:pfam12128 771 AKLKREIRTLERKIERIAVRRQE--VLRYFDWYQEtWLQRRPRLATQLSNIERAISELQQQLARLIADTK 838
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
280-623 |
7.92e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 280 ANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYD 359
Cdd:pfam10174 335 AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKD 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 360 RQLVQRETLIKEAAKrhdirgyDYDITDKQVADFKQILSKMSR------DQNRALERARQE----SQKDLKEAQDDLNQL 429
Cdd:pfam10174 415 KQLAGLKERVKSLQT-------DSSNTDTALTTLEEALSEKERiierlkEQREREDRERLEelesLKKENKDLKEKVSAL 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 430 NTRKSGASQS----KESARSQIANNDKRISDLQ--KAMVQIKADEGSEvvlqdkkrdTEEQLQNASAASSSERYEErvqE 503
Cdd:pfam10174 488 QPELTEKESSlidlKEHASSLASSGLKKDSKLKslEIAVEQKKEECSK---------LENQLKKAHNAEEAVRTNP---E 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 504 ASNNMRTLEDKKERLTNELGEATKQAKESASI-DYARNELQSAQHSLTTMKKVHNERISelvDSDWDPATLETSYQQTLS 582
Cdd:pfam10174 556 INDRIRLLEQEVARYKEESGKAQAEVERLLGIlREVENEKNDKDKKIAELESLTLRQMK---EQNKKVANIKHGQQEMKK 632
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 169621967 583 EKASKVKEATSRRDISQSKLDKInfQLSSLESQLKKKRSEL 623
Cdd:pfam10174 633 KGAQLLEEARRREDNLADNSQQL--QLEELMGALEKTRQEL 671
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
402-1007 |
1.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 402 RDQNRALERARQESQKdLKEAQDDLNQLNTRKSGASQSKESARSQIAnnDKRISDLQKAMVQikadegsevvLQDKKRDT 481
Cdd:COG4913 248 REQIELLEPIRELAER-YAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELAR----------LEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 482 EEQLQNAsaassseryEERVQEASNNMRTLE-DKKERLTNELGEATKQAKEsasIDYARNELQSAQHSLttmkkvhneri 560
Cdd:COG4913 315 EARLDAL---------REELDELEAQIRGNGgDRLEQLEREIERLERELEE---RERRRARLEALLAAL----------- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 561 selvdsDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQtvtkaiQRDDIS 640
Cdd:COG4913 372 ------GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER------RKSNIP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 641 DFNETLEQLEADYEGVSTDAAKFAAnaEYMrsclESARKHNVCRLC-ERELHddrSQKFTI---EGFYSKLESIIakaes 716
Cdd:COG4913 440 ARLLALRDALAEALGLDEAELPFVG--ELI----EVRPEEERWRGAiERVLG---GFALTLlvpPEHYAAALRWV----- 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 717 amkgenpeelleeleqarNAKPsyelaLRLRdteipalqIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVES-MSKE 795
Cdd:COG4913 506 ------------------NRLH-----LRGR--------LVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 796 VQSIVGYY--NKVHEL---------EVQIKD---LAQKQKTAGLSRG----------IDAVQSDLKTITDDSRNARNVLE 851
Cdd:COG4913 555 LGRRFDYVcvDSPEELrrhpraitrAGQVKGngtRHEKDDRRRIRSRyvlgfdnrakLAALEAELAELEEELAEAEERLE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 852 QLTAARDKSRNHITSLElSVRDINAELNNAQSKLKEKRALGARIEEFKTENNkqrelirgydkDIEGLVPEIEQAQYKYD 931
Cdd:COG4913 635 ALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAELEAELERLDASSD-----------DLAALEEQLEELEAELE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 932 DINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAYIQRGGPEQLA--------------------RTHREIENLQGDL 991
Cdd:COG4913 703 ELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlleerfaaalgdaverelreNLEERIDALRARL 782
|
650
....*....|....*.
gi 169621967 992 ARVESEMMDVMRKIKK 1007
Cdd:COG4913 783 NRAEEELERAMRAFNR 798
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
21-45 |
1.20e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 42.06 E-value: 1.20e-03
10 20
....*....|....*....|....*
gi 169621967 21 ETIKFDPPLTLIVGWNGSGKTTIIE 45
Cdd:COG3910 31 EGLEFHPPVTFFVGENGSGKSTLLE 55
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1200-1268 |
1.31e-03 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 41.75 E-value: 1.31e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidmrrKQSNFQLVVITHD 1268
Cdd:cd03235 134 SGGQQQ------RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-----RREGMTILVVTHD 191
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
165-651 |
1.34e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 165 LSDATTLKKKFDEIFEAMKYTKAIDNIKMIRKNRNIQLGQ-LKIIEGHAKEDKSRAFKSQTRQAELYDAIETLRKEyvvI 243
Cdd:TIGR04523 64 NKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSdLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKN---I 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 244 DEEVTEAQEKAREAYDHSVRYSRIVN---DLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQN 320
Cdd:TIGR04523 141 DKFLTEIKKKEKELEKLNNKYNDLKKqkeELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQI 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 321 DEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQlvQRETLIKEAAKRHDIRGYDYDITDKQvADFKQILSKM 400
Cdd:TIGR04523 221 SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE--QNKIKKQLSEKQKELEQNNKKIKELE-KQLNQLKSEI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 401 SRDQNRALERARQESQKDLKEAQDDLNQLNTrksgasqskesarsQIANNDKRISDLQKAMVQIKAD-EGSEVVLQDKKR 479
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKSELKNQEKKLEEIQN--------------QISQNNKIISQLNEQISQLKKElTNSESENSEKQR 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 480 DTEEQLQNAsaasssERYEERVQEASNNMRTLEDKKERLTNELGEATKQAKES----ASIDYARNELQSAQHSLTTMKKV 555
Cdd:TIGR04523 364 ELEEKQNEI------EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKdeqiKKLQQEKELLEKEIERLKETIIK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 556 HNERISELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAIQ 635
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK 517
|
490
....*....|....*.
gi 169621967 636 RddISDFNETLEQLEA 651
Cdd:TIGR04523 518 K--ISSLKEKIEKLES 531
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1200-1268 |
1.37e-03 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 41.02 E-value: 1.37e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidmrRKQSNFQLVVITHD 1268
Cdd:cd03229 102 SGGQQQ------RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL----QAQLGITVVLVTHD 160
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
449-912 |
1.89e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 449 NNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERLTNELGEATKQ 528
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 529 AKEsasIDYARNELQSAQHSLTTMKKVHnERISELVDSDWDPATLETsyQQTLSEKASKVKEATSRRDISQSKLDKINFQ 608
Cdd:COG4717 148 LEE---LEERLEELRELEEELEELEAEL-AELQEELEELLEQLSLAT--EEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 609 LSSLESQLKKKRSELRQYEQtvtkaiqrddisdfNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESArkhnvcrlcer 688
Cdd:COG4717 222 LEELEEELEQLENELEAAAL--------------EERLKEARLLLLIAAALLALLGLGGSLLSLILTIA----------- 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 689 ELHDDRSQKFTIEGFYSKLESIIAKAESAMKGENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLTSERENV 768
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 769 NKQLE--DQDSIVHELEAERQEVESMSKE-VQSIVGYYNKVHELEVQIKDLAQKqktagLSRGIDAVQSDLKTITDDSRN 845
Cdd:COG4717 357 EELEEelQLEELEQEIAALLAEAGVEDEEeLRAALEQAEEYQELKEELEELEEQ-----LEELLGELEELLEALDEEELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169621967 846 ARnvLEQLTAARDKSRNHITSLELSVRDINAELnnaqSKLKEKRALGARIEEFKTENNKQRELIRGY 912
Cdd:COG4717 432 EE--LEELEEELEELEEELEELREELAELEAEL----EQLEEDGELAELLQELEELKAELRELAEEW 492
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1212-1269 |
2.02e-03 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 41.27 E-value: 2.02e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 169621967 1212 RLALAECFGTNCGLIALDEPTTNLDQQNikglAEslsQIIDM---RRKQSNFQLVVITHDE 1269
Cdd:COG4181 154 RVALARAFATEPAILFADEPTGNLDAAT----GE---QIIDLlfeLNRERGTTLVLVTHDP 207
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
827-1153 |
2.12e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 827 RGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLKEKRALGARIEEFKtennKQR 906
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 907 ELIRGYDKDIEGLVPEIEqaqykyddinrrgnERVQRAHDEASKLSDSLRQLSQADEEITAYIQRGgpEQLARTHREIEN 986
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELE--------------ERIEELKKEIEELEEKVKELKELKEKAEEYIKLS--EFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 987 LQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDNLR----YRKAKRSLETLQADIEKLEAHGAERdqAHYTREak 1062
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKrleeLEERHELYEEAKAKKEELERLKKRL--TGLTPE-- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1063 HWDDQYHSLNTTKTSIERDMKNKDDQLTELMKEYEDIyQNADHQYKEAHLKVETTKAAIEDLGRyagaldKAIMQYHTLK 1142
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL-KKAIEELKKAKGKCPVCGRELTEEHR------KELLEEYTAE 460
|
330
....*....|.
gi 169621967 1143 MEEINRIIAEL 1153
Cdd:PRK03918 461 LKRIEKELKEI 471
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1200-1276 |
2.17e-03 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 40.28 E-value: 2.17e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169621967 1200 SAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLaesLSQIIDMRRKQSNfqLVVITHDETFLSAMN 1276
Cdd:cd03246 98 SGGQRQ------RLGLARALYGNPRILVLDEPNSHLDVEGERAL---NQAIAALKAAGAT--RIVIAHRPETLASAD 163
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
805-967 |
2.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 805 KVHELEVQIKDLAQKQKTagLSRGIDAVQSDLKTITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSk 884
Cdd:COG1579 11 DLQELDSELDRLEHRLKE--LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 885 LKEKRALGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEE 964
Cdd:COG1579 88 NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
...
gi 169621967 965 ITA 967
Cdd:COG1579 168 LAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
215-374 |
2.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 215 DKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVTEAQEKAREAYDHSVRY------------SRIVNDLEFKRTTFDANK 282
Cdd:COG4913 279 AALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELeaqirgnggdrlEQLEREIERLERELEERE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 283 QSVAALEDNLTHM----AESDDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQY 358
Cdd:COG4913 359 RRRARLEALLAALglplPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
170
....*....|....*.
gi 169621967 359 DRQLVQRETLIKEAAK 374
Cdd:COG4913 439 PARLLALRDALAEALG 454
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
229-375 |
2.43e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 41.23 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 229 LYDAIETLRKEYVVIDEEVTEAQEKAREAYDHSVRYSRIVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQ 308
Cdd:pfam15294 131 LHMEIERLKEENEKLKERLKTLESQATQALDEKSKLEKALKDLQKEQGAKKDVKSNLKEISDLEEKMAALKSDLEKTLNA 210
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169621967 309 YKQRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEqydrQLVQRETLIKEAAKR 375
Cdd:pfam15294 211 STALQKSLEEDLASTKHELLKVQEQLEMAEKELEKKFQQTAAYRNMKE----MLTKKNEQIKELRKR 273
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
1190-1276 |
3.77e-03 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 41.56 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1190 DTEMDMRGR-CSAGQKVlaclviRLALAECFGTNCGLIALDEPTTNLDQQNIKGLAESLSQIidmrrKQSNFQLVVITHD 1268
Cdd:TIGR01842 445 DTVIGPGGAtLSGGQRQ------RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-----KARGITVVVITHR 513
|
....*...
gi 169621967 1269 ETFLSAMN 1276
Cdd:TIGR01842 514 PSLLGCVD 521
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
815-1032 |
3.83e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 815 DLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARNVLEQLtaardKSRNHITSLEL-------SVRDINAELNNAQSKLKE 887
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEeaklllqQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 888 KRALGARIEEfKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRR---GNERVQRAHDEaskLSDSLRQLSQADEE 964
Cdd:COG3206 238 AEARLAALRA-QLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQ---IAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 965 ITAYIQRggpeQLARTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEmTKRSISDNL--RYRKAK 1032
Cdd:COG3206 314 ILASLEA----ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-VARELYESLlqRLEEAR 378
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
300-654 |
4.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 300 DELQSMLDQYKQRVEtyatqndehrhEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKRHDIR 379
Cdd:COG4717 74 KELEEELKEAEEKEE-----------EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 380 GYDYDItdkqvadfKQILSKMSRDQNraLERARQESQKDLKEAQDDLNQLNTRKSgasqskESARSQIANNDKRISDLQK 459
Cdd:COG4717 143 ELPERL--------EELEERLEELRE--LEEELEELEAELAELQEELEELLEQLS------LATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 460 AMVQIKADEGSevvLQDKKRDTEEQLQNASAASSSERYEERVQEA-----------------SNNMRTLEDKKERLTNEL 522
Cdd:COG4717 207 RLAELEEELEE---AQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallglgGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 523 GEATKQAKESASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLETSYQQTLSEKASKVKEATSRRDISQSKL 602
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 603 DKINFQ----------------------------------LSSLESQLKKKRSELRQYEQTVTKAIQRDDISDFNETLEQ 648
Cdd:COG4717 364 QLEELEqeiaallaeagvedeeelraaleqaeeyqelkeeLEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE 443
|
....*.
gi 169621967 649 LEADYE 654
Cdd:COG4717 444 LEEELE 449
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
196-545 |
5.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 196 KNRNIQLGQLKIIEG---HAKEDKSRAFKSQTRQAELYDAIETLRKEYVVIDEEVtEAQEKAREAYDHSVRYSRI----- 267
Cdd:COG4717 64 RKPELNLKELKELEEelkEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-EKLEKLLQLLPLYQELEALeaela 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 268 -----VNDLEFKRTTFDANKQSVAALEDNLTHMAES-DDELQSMLDQYKQRVETYATQNDEHRHEYADLKDALEVTRESL 341
Cdd:COG4717 143 elperLEELEERLEELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 342 GVKQSEIGKYEAQKEQYD--RQLVQRETLIKEAAKRHDIRGYDYDITDKQ-------------VADFKQILSKMSRDQNR 406
Cdd:COG4717 223 EELEEELEQLENELEAAAleERLKEARLLLLIAAALLALLGLGGSLLSLIltiagvlflvlglLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 407 ALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQI---------------ANNDKRISDLQKAMVQIKADEGSE 471
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdrieelqellreaeeLEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 472 ---------------VVLQDKKRDTEEQLQNA-------SAASSSERYEERVQEASNNMRTLEDKKERLTNELGE---AT 526
Cdd:COG4717 383 deeelraaleqaeeyQELKEELEELEEQLEELlgeleelLEALDEEELEEELEELEEELEELEEELEELREELAEleaEL 462
|
410
....*....|....*....
gi 169621967 527 KQAKESASIDYARNELQSA 545
Cdd:COG4717 463 EQLEEDGELAELLQELEEL 481
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
12-49 |
5.33e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 40.66 E-value: 5.33e-03
10 20 30
....*....|....*....|....*....|....*...
gi 169621967 12 IRSFGPERGETIKFDPPLTLIVGWNGSGKTTIIECLRY 49
Cdd:pfam13175 8 IKNFRCLKDTEIDLDEDLTVLIGKNNSGKSSILEALDI 45
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
416-1011 |
6.87e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 416 QKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKamvQIKADEGSEVVLQDKKRDteeqlqNASAASSSE 495
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKN---KLLKLELLLSNLKKKIQK------NKSLESQIS 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 496 RYEERVQEASNNMRTLEDKKERLTNELGEATKQAKE-SASIDYARNELQSAQHSLTTMKKVHNERISELVDSDWDPATLE 574
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQlKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 575 TSYQQTLSEK-ASKVKEATSRRDISQSKLDKINFQLSSLE---SQLKKKRSELRQYEQTVTKAIQRDdisdfNETLEQLE 650
Cdd:TIGR04523 302 NQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNeqiSQLKKELTNSESENSEKQRELEEK-----QNEIEKLK 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 651 ADYEGVSTDAAKFAANAEYMRSCLESARKHNvcRLCERELHDDRSQKFTIEGFYSKLESIIAKAESAMKG-ENPEELLEE 729
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQEKLN--QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDlTNQDSVKEL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 730 LEQARNAKPSYElalrlrDTEIPALQIDMSKLTSERENVNKQLEDQDSIVHELEAERQEVESMSKE-VQSIVGYYNKVHE 808
Cdd:TIGR04523 455 IIKNLDNTRESL------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDlTKKISSLKEKIEK 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 809 LEVQIKDLAQKQKTagLSRGIDAVQSDLK--TITDDSRNARNVLEQLTAARDKSRNHITSLELSVRDINAELNNAQSKLK 886
Cdd:TIGR04523 529 LESEKKEKESKISD--LEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 887 EKRA----LGARIEEFKTENNKQRELIRGYDKDIEGLVPEIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQAD 962
Cdd:TIGR04523 607 EKEKkissLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWL 686
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 169621967 963 EE--------ITAYIQRGGPEQLARTHREIENLQGDLARVESEMMDVMRKIKKIEDS 1011
Cdd:TIGR04523 687 KElslhykkyITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
4-1276 |
6.92e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 4 IDRLMIQGIRSFGpeRGETIKFDPPLTLIVGWNGSGKTTIIECLRYATtgdlpphSKTGGAFLHDPKLQDekeimaqvkL 83
Cdd:pfam02463 2 LKRIEIEGFKSYA--KTVILPFSPGFTAIVGPNGSGKSNILDAILFVL-------GERSAKSLRSERLSD---------L 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 84 SFRSTSGVRMVAtrSMQVTVKKTGRSQKTlegsllmkkDTENHSISTRVaeldqiipqylgvpkaILDNvifchqeDSTW 163
Cdd:pfam02463 64 IHSKSGAFVNSA--EVEITFDNEDHELPI---------DKEEVSIRRRV----------------YRGG-------DSEY 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 164 PLSDATTLKKKFDEIFEamkytkaidNIKMIRKNRNIQLGQLKIIEGHAKEDKSRAFksqtrqaelydaietlrkeyvvI 243
Cdd:pfam02463 110 YINGKNVTKKEVAELLE---------SQGISPEAYNFLVQGGKIEIIAMMKPERRLE----------------------I 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 244 DEEVTEAQEKAREAydhsvrysriVNDLEFKRTTFDANKQSVAALEDNLTHMAESDDELQSMLDQYKQRVETYATQNDEH 323
Cdd:pfam02463 159 EEEAAGSRLKRKKK----------EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLY 228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 324 RHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQRETLIKEAAKRHDIRGYDYDITDKQVADFKQILSKMSRD 403
Cdd:pfam02463 229 LDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 308
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 404 QNRALERArQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKRISDLQKAMVQIKADEGSEVVLQDKKRDTEE 483
Cdd:pfam02463 309 KVDDEEKL-KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 484 QLQNASAASSSERYEErVQEASNNMRTLEDKKERLTNELG-EATKQAKESASIDYARNELQSAQHSLTTMKKVHNERISE 562
Cdd:pfam02463 388 SAAKLKEEELELKSEE-EKEAQLLLELARQLEDLLKEEKKeELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 563 L-VDSDWDPATLETS--YQQTLSEKASKVKEATSRRDISQSKLDKINFQLSSLESQLKKKRSELRQYEQTVTKAIQRDDI 639
Cdd:pfam02463 467 LkKSEDLLKETQLVKlqEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 640 SDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESARKHNVCRLCERELHDDRSQKFTIEGFYSKLESIIAKAESAMK 719
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 720 GENPEELLEELEQARNAKPSYELALRLRDTEIPALQIDMSKLT-SERENVNKQLEDQD-SIVHELEAERQEVESMSKEVQ 797
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSeLTKELLEIQELQEKaESELAKEEILRRQLEIKKKEQ 706
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 798 SIVGYYNKVHELEVQIKDLAQKQKTAGLSRGIDAVQSDLKTITDDSRNARnvLEQLTAARDKSRNHITSLELSVRDINAE 877
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSR--LKKEEKEEEKSELSLKEKELAEEREKTE 784
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 878 LNNAQSKLKEKRALGARIEefKTENNKQRELIRGYDKDIEglvpEIEQAQYKYDDINRRGNERVQRAhDEASKLSDSLRQ 957
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEEL--RALEEELKEEAELLEEEQL----LIEQEEKIKEEELEELALELKEE-QKLEKLAEEELE 857
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 958 LSQADEEITAYIQRggpeqlaRTHREIENLQGDLARVESEMMDVMRKIKKIEDSVRDVEMTKRSISDNLRYRKAKRSLET 1037
Cdd:pfam02463 858 RLEEEITKEELLQE-------LLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1038 LQADIEKLEAHGAERDQahYTREAKHWDDQYHSLNTTKTSIERDMKNKDDQLTELMKEYEdiyqnadhQYKEAHLKVETT 1117
Cdd:pfam02463 931 LKYEEEPEELLLEEADE--KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE--------RYNKDELEKERL 1000
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1118 KAAIEDLGRYAGALDKAIMQYHTLKMEEINR-----IIAELWTNAYQGTDVDTIRIASDSdgkgnrqYNYRVVMSKQDTE 1192
Cdd:pfam02463 1001 EEEKKKLIRAIIEETCQRLKEFLELFVSINKgwnkvFFYLELGGSAELRLEDPDDPFSGG-------IEISARPPGKGVK 1073
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 1193 -MDMrgrCSAGQKVLACLVIRLALAECFGTNcgLIALDEPTTNLDQQNIKGLAESLsqiidmRRKQSNFQLVVITHDETF 1271
Cdd:pfam02463 1074 nLDL---LSGGEKTLVALALIFAIQKYKPAP--FYLLDEIDAALDDQNVSRVANLL------KELSKNAQFIVISLREEM 1142
|
....*
gi 169621967 1272 LSAMN 1276
Cdd:pfam02463 1143 LEKAD 1147
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
599-1046 |
7.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 599 QSKLDKINF-QLSSLESQLKKKRSELRQYEQtvtkaiQRDDISDFNETLEQLEADYEGVSTDAAKFAANAEYMRSCLESA 677
Cdd:COG4717 62 QGRKPELNLkELKELEEELKEAEEKEEEYAE------LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 678 RKHNVCRLCERELHDDRSQKFTIEGF---YSKLESIIAKAESAMKGENPEELLEELEQARNAKPSYE---LALRLRDTEI 751
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELeeeLEELEAELAELQEELEELLEQLSLATEEELQDLAEELEelqQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 752 PALQIDMSKLTSERENVNKQLEDQDsIVHELEAERQEVESMSkEVQSIVGYYNKVHELEVQIKDLAQKqkTAGLSRGIDA 831
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAA-LEERLKEARLLLLIAA-ALLALLGLGGSLLSLILTIAGVLFL--VLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 832 VQSDLKTITDDSRNARNVLEQLTAARDKSRNHI-TSLELSVRDINAELNNAQSKLKEKRALGARIEEFKtennkQRELIR 910
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELlAALGLPPDLSPEELLELLDRIEELQELLREAEELE-----EELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 911 GYDKDIEGLvpeIEQAQYKYDDINRRGNERVQRAHDEASKLSDSLRQLSQADEEITAYIQRGGPEQLartHREIENLQGD 990
Cdd:COG4717 367 ELEQEIAAL---LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL---EEELEELEEE 440
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 169621967 991 LARVESEMMDVMRKIKKIEDSVRDVEmtkrsisDNLRYRKAKRSLETLQADIEKLE 1046
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLE-------EDGELAELLQELEELKAELRELA 489
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
12-86 |
7.54e-03 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 39.17 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 12 IRSFGPERGE-TIKFDP----PLTLIVGWNGSGKTTIIECLRYATTGDLPPHSKTGGafLHDPKLQDEKEimAQVKLSFR 86
Cdd:cd03279 8 LKNFGPFREEqVIDFTGldnnGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN--LRSVFAPGEDT--AEVSFTFQ 83
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
300-467 |
7.93e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 300 DELQSMLDQYK--QRVETYATQNDEHRHEYADLKDALEVTRESLGVKQSEIGKYEAQKEQYDRQLVQR-ETLIKEAAKRH 376
Cdd:COG4913 275 EYLRAALRLWFaqRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlEREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 377 DIRGYDYDITDKQVADFKQILSKMSRD---QNRALERARQESQKDLKEAQDDLNQLNTRKSGASQSKESARSQIANNDKR 453
Cdd:COG4913 355 EERERRRARLEALLAALGLPLPASAEEfaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
170
....*....|....
gi 169621967 454 ISDLQKAMVQIKAD 467
Cdd:COG4913 435 KSNIPARLLALRDA 448
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
283-536 |
8.54e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 283 QSVAALEDNLTHMAESDDELQSMLDqyKQRVETYATQND---EHRHEYADLKDalevtRES-LGVKQSEIGKYEAQKEQy 358
Cdd:pfam05262 155 QIVIPLKKNILSGNVSDVDTDSISD--KKVVEALREDNEkgvNFRRDMTDLKE-----RESqEDAKRAQQLKEELDKKQ- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 359 drqlvqretliKEAAKRhdirgydyditdKQVADFKQilskmsrdqnRALERARQESQKDLKEAQDdlnqlntrksgasq 438
Cdd:pfam05262 227 -----------IDADKA------------QQKADFAQ----------DNADKQRDEVRQKQQEAKN-------------- 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169621967 439 SKESARSQIANNDKRISDLQKAMVqikadegsEVVLQDKKRDTEEQLQNASAASSSERYEERVQEASNNMRTLEDKKERL 518
Cdd:pfam05262 260 LPKPADTSSPKEDKQVAENQKREI--------EKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
|
250 260
....*....|....*....|....*.
gi 169621967 519 --------TNELGEATKQAKESASID 536
Cdd:pfam05262 332 pvaedlqkTKPQVEAQPTSLNEDAID 357
|
|
| |
