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Conserved domains on  [gi|146103044|ref|XP_001469471|]
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putative N-acetyltransferase subunit Nat1 [Leishmania infantum JPCM5]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NatA_aux_su super family cl26342
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 185-667 1.02e-80

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


The actual alignment was detected with superfamily member pfam12569:

Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 266.06  E-value: 1.02e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  185 VEVSEAQLYRVELELESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEKRYIEVISMgvsEADSIAALAH 264
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLER---NPENHAYYEG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  265 LRKIpldryLRPAAGYTEKYMEIIDRVLKACPKCDYAKRHALDCVPIAEFSERLAAFATPYIQRMIPSLFSVLKSLYVDA 344
Cdd:pfam12569  78 LEKA-----LGISKEDHEALLALYDELAEKYPRSDAPRRLPLDFLEGEEFKELADKYLRRMLRKGVPSLFVNLKSLYTDS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  345 ERAAIIGDVFAMMERELEAKDFSRFGGEAN-----PCYILWVRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEK 419
Cdd:pfam12569 153 EKVDIIEELVEGYVSSLKTNGKFSGSDNGDgekepPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTK 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  420 AKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVERGEATMQLFYKpsvvTGDTYLTAL-ESQCYWYERE 498
Cdd:pfam12569 233 ARIYKHAGDLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTR----NGVGALGNLnEMQCMWFLTE 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  499 VGEAFYRRGDYISALQNLLMFERHHEQNHCELSDFHNYVFRRNTMRPWFDVLDCDDNMGRNKFFLKFCPAIVRTYMRIHE 578
Cdd:pfam12569 309 DGEAYQRQGKYGLALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHD 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  579 KGEeavrAAHVPRPELKFDAIAADEVKRMKQQQK-----------------------------DYYISDVDL-------- 621
Cdd:pfam12569 389 KPL----LKEGPEEEGDNGNLSPAERKKARKKQKkaekkaekeeaekaakkkkkkaekkakgeDGETKKEDPdplgekla 464

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 146103044  622 --SEPLVKASRYMGYLLAHRSTQASTHTLAIELYTAAAKPLLVARSLL 667
Cdd:pfam12569 465 qtEDPLEEAMKFLKPLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLK 512
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 9-141 4.61e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 4.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044   9 SADQQRLFDRMNREYSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGM 88
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146103044  89 CQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRDWPLFLEAREKMV 141
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
 
Name Accession Description Interval E-value
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 185-667 1.02e-80

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 266.06  E-value: 1.02e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  185 VEVSEAQLYRVELELESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEKRYIEVISMgvsEADSIAALAH 264
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLER---NPENHAYYEG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  265 LRKIpldryLRPAAGYTEKYMEIIDRVLKACPKCDYAKRHALDCVPIAEFSERLAAFATPYIQRMIPSLFSVLKSLYVDA 344
Cdd:pfam12569  78 LEKA-----LGISKEDHEALLALYDELAEKYPRSDAPRRLPLDFLEGEEFKELADKYLRRMLRKGVPSLFVNLKSLYTDS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  345 ERAAIIGDVFAMMERELEAKDFSRFGGEAN-----PCYILWVRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEK 419
Cdd:pfam12569 153 EKVDIIEELVEGYVSSLKTNGKFSGSDNGDgekepPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTK 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  420 AKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVERGEATMQLFYKpsvvTGDTYLTAL-ESQCYWYERE 498
Cdd:pfam12569 233 ARIYKHAGDLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTR----NGVGALGNLnEMQCMWFLTE 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  499 VGEAFYRRGDYISALQNLLMFERHHEQNHCELSDFHNYVFRRNTMRPWFDVLDCDDNMGRNKFFLKFCPAIVRTYMRIHE 578
Cdd:pfam12569 309 DGEAYQRQGKYGLALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHD 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  579 KGEeavrAAHVPRPELKFDAIAADEVKRMKQQQK-----------------------------DYYISDVDL-------- 621
Cdd:pfam12569 389 KPL----LKEGPEEEGDNGNLSPAERKKARKKQKkaekkaekeeaekaakkkkkkaekkakgeDGETKKEDPdplgekla 464

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 146103044  622 --SEPLVKASRYMGYLLAHRSTQASTHTLAIELYTAAAKPLLVARSLL 667
Cdd:pfam12569 465 qtEDPLEEAMKFLKPLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLK 512
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 9-141 4.61e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 4.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044   9 SADQQRLFDRMNREYSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGM 88
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146103044  89 CQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRDWPLFLEAREKMV 141
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-278 4.22e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 4.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  39 LRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTFDPANTEVLR 118
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 119 DLASACIQVRDWPLFLEAREKMVTAKASVRANWVALSCGHRILGHSRIAAAVMDTMTSImdagdNPvEVSEAQLYRVELE 198
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DP-DDADALYNLGIAL 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 199 LESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEKRYIEVISMGVSEADSIAALAHLRKIPLDRYLRPAA 278
Cdd:COG0457  155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
TPR_1 pfam00515
Tetratricopeptide repeat;
82-113 6.89e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 6.89e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 146103044   82 AWHALGMCQRLDKKFGEAVKAFKRALTFDPAN 113
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 185-667 1.02e-80

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 266.06  E-value: 1.02e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  185 VEVSEAQLYRVELELESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEKRYIEVISMgvsEADSIAALAH 264
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLER---NPENHAYYEG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  265 LRKIpldryLRPAAGYTEKYMEIIDRVLKACPKCDYAKRHALDCVPIAEFSERLAAFATPYIQRMIPSLFSVLKSLYVDA 344
Cdd:pfam12569  78 LEKA-----LGISKEDHEALLALYDELAEKYPRSDAPRRLPLDFLEGEEFKELADKYLRRMLRKGVPSLFVNLKSLYTDS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  345 ERAAIIGDVFAMMERELEAKDFSRFGGEAN-----PCYILWVRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEK 419
Cdd:pfam12569 153 EKVDIIEELVEGYVSSLKTNGKFSGSDNGDgekepPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTK 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  420 AKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVERGEATMQLFYKpsvvTGDTYLTAL-ESQCYWYERE 498
Cdd:pfam12569 233 ARIYKHAGDLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTR----NGVGALGNLnEMQCMWFLTE 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  499 VGEAFYRRGDYISALQNLLMFERHHEQNHCELSDFHNYVFRRNTMRPWFDVLDCDDNMGRNKFFLKFCPAIVRTYMRIHE 578
Cdd:pfam12569 309 DGEAYQRQGKYGLALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHD 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  579 KGEeavrAAHVPRPELKFDAIAADEVKRMKQQQK-----------------------------DYYISDVDL-------- 621
Cdd:pfam12569 389 KPL----LKEGPEEEGDNGNLSPAERKKARKKQKkaekkaekeeaekaakkkkkkaekkakgeDGETKKEDPdplgekla 464

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 146103044  622 --SEPLVKASRYMGYLLAHRSTQASTHTLAIELYTAAAKPLLVARSLL 667
Cdd:pfam12569 465 qtEDPLEEAMKFLKPLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLK 512
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 9-141 4.61e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 4.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044   9 SADQQRLFDRMNREYSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGM 88
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146103044  89 CQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRDWPLFLEAREKMV 141
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 8-138 7.92e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 7.92e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044   8 LSADQQRLFDRMNREYSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALG 87
Cdd:COG3914   74 LLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG 153

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 146103044  88 MCQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRDWPlflEARE 138
Cdd:COG3914  154 EALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE---EAIA 201
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
27-243 3.20e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 3.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  27 EYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRA 106
Cdd:COG0457   23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 107 LTFDPANTEVLRDLASACIQVRDWPLFLEAREKMVTAKASVRANWVALSCGHRILGhsRIAAAVMDTMTSIMDAGDNPVE 186
Cdd:COG0457  103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG--RYEEALELLEKLEAAALAALLA 180

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 146103044 187 VSEAQLYRVELELESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEK 243
Cdd:COG0457  181 AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 28-158 2.94e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 2.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  28 YSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRAL 107
Cdd:COG3914  128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146103044 108 TFDPANTEVLRDLASACIQVRDWPLF--LEAREKMVTAKASVRANWVALSCGH 158
Cdd:COG3914  208 ELDPDNADAHSNLLFALRQACDWEVYdrFEELLAALARGPSELSPFALLYLPD 260
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-278 4.22e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 4.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  39 LRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTFDPANTEVLR 118
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 119 DLASACIQVRDWPLFLEAREKMVTAKASVRANWVALSCGHRILGHSRIAAAVMDTMTSImdagdNPvEVSEAQLYRVELE 198
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DP-DDADALYNLGIAL 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 199 LESGAPQRALELLKKHDSEIIDVETKLLLRAKAHAQLGQRMEAEKRYIEVISMGVSEADSIAALAHLRKIPLDRYLRPAA 278
Cdd:COG0457  155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 25-267 1.68e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 1.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  25 NREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFK 104
Cdd:COG2956   21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 105 RALTFDPANTEVLRDLASACIQVRDWPLFLEAREKMVTAKASVRANWVALSCGHRILGHSRIAAAVMDTMTSImdagdNP 184
Cdd:COG2956  101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-----DP 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 185 VEVsEAQLYRVELELESGAPQRALELLKK---HDSEIIDVetkLLLRAKAHAQLGQRMEAEKRYIEVISMGVSEADSIAA 261
Cdd:COG2956  176 DCA-RALLLLAELYLEQGDYEEAIAALERaleQDPDYLPA---LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251


                 ....*.
gi 146103044 262 LAHLRK 267
Cdd:COG2956  252 ADLLER 257
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 23-115 1.59e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 1.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  23 YSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKA 102
Cdd:COG4235   28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107

                         90
                 ....*....|...
gi 146103044 103 FKRALTFDPANTE 115
Cdd:COG4235  108 WQKLLALLPADAP 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 30-154 1.60e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 1.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  30 KALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTF 109
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 146103044 110 DPANTEVLRDLASACIQVRDWPLFLEAREKMVtAKASVRANWVAL 154
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLL-ALLPADAPARLL 124
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
13-151 1.14e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 1.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  13 QRLFDRMNREYSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRL 92
Cdd:COG4785   74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 146103044  93 DKKFGEAVKAFKRALTFDPANTEVLrdlasaciqvrDWPLFLEAREKMVTAKASVRANW 151
Cdd:COG4785  154 LGRYELAIADLEKALELDPNDPERA-----------LWLYLAERKLDPEKALALLLEDW 201
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 50-139 9.59e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 9.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  50 AGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRD 129
Cdd:COG5010   58 SPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137

                         90
                 ....*....|
gi 146103044 130 WPLFLEAREK 139
Cdd:COG5010  138 DDEAKAALQR 147
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
43-139 1.63e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 1.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  43 PDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTFDPANTEVLRDLAS 122
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149

                         90
                 ....*....|....*..
gi 146103044 123 ACIQVRDWPLFLEAREK 139
Cdd:COG4785  150 ALYYLGRYELAIADLEK 166
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 385-516 1.99e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 385 LASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVE 464
Cdd:COG2956   48 LGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 146103044 465 RGEATMQLfykpsvvtgdtyLTALESQCYWYEREVGEAFYRRGDYISALQNL 516
Cdd:COG2956  128 KAIEVLER------------LLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
27-112 2.08e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  27 EYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGyESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRA 106
Cdd:COG3063    7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85


                 ....*.
gi 146103044 107 LTFDPA 112
Cdd:COG3063   86 LELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 52-296 2.79e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 2.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  52 RGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKAFKRALTFDPANTEVLRDLASACIQVRDW- 130
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLd 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 131 ---PLFLEAREKmVTAKASVRANWVALscgHRILGHSRIAAAVMDTMTSIMDagdnpvEVSEAQLYRVELELESGAPQRA 207
Cdd:COG2956   94 raeELLEKLLEL-DPDDAEALRLLAEI---YEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 208 LELLKK---HDSEIIDVetkLLLRAKAHAQLGQRMEAEKRYIEVISmgvSEADSIAALAHLRKIpldrYLRpaAGYTEKY 284
Cdd:COG2956  164 IEALEKalkLDPDCARA---LLLLAELYLEQGDYEEAIAALERALE---QDPDYLPALPRLAEL----YEK--LGDPEEA 231

                        250
                 ....*....|..
gi 146103044 285 MEIIDRVLKACP 296
Cdd:COG2956  232 LELLRKALELDP 243
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
55-149 6.83e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 6.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  55 VLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAvKAFKRALTFDPANTEVLRDLASACIQVRDWPLFL 134
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 146103044 135 EAREKMVTAKASVRA 149
Cdd:COG3063   80 AYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 385-471 6.91e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 6.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 385 LASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVE 464
Cdd:COG2956  150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229


                 ....*..
gi 146103044 465 RGEATMQ 471
Cdd:COG2956  230 EALELLR 236
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 23-111 7.31e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 7.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  23 YSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKA 102
Cdd:COG5010   65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                 ....*....
gi 146103044 103 FKRALTFDP 111
Cdd:COG5010  145 LQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 375-530 1.55e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 375 PCYILWVRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAA 454
Cdd:COG2956    4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 146103044 455 KYYFRDNQVERGEATmqlfYKPSVVTGDTYLTALesqcywyeREVGEAFYRRGDYISALQNLLMFERHHEQN---HCEL 530
Cdd:COG2956   84 QDYLKAGLLDRAEEL----LEKLLELDPDDAEAL--------RLLAEIYEQEGDWEKAIEVLERLLKLGPENahaYCEL 150
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 385-516 2.33e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 2.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 385 LASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVE 464
Cdd:COG2956   82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 146103044 465 RGEATMQlfykpsvvtgdtYLTALESQCYWYEREVGEAFYRRGDYISALQNL 516
Cdd:COG2956  162 EAIEALE------------KALKLDPDCARALLLLAELYLEQGDYEEAIAAL 201
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 384-471 4.78e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 4.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 384 FLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQV 463
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101


                 ....*...
gi 146103044 464 ERGEATMQ 471
Cdd:COG4235  102 AEAIAAWQ 109
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 379-471 5.23e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 5.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 379 LWVRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYF 458
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90
                 ....*....|...
gi 146103044 459 RDNQVERGEATMQ 471
Cdd:COG4783   84 KAGDYDEALALLE 96
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 381-526 1.96e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 381 VRTFLASHYRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRD 460
Cdd:COG2956  112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 146103044 461 NQVERGEATMQLFYKPSvvtgDTYLTALEsqcywyerEVGEAFYRRGDYISALQNLLMFERHHEQN 526
Cdd:COG2956  192 GDYEEAIAALERALEQD----PDYLPALP--------RLAELYEKLGDPEEALELLRKALELDPSD 245
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 389-471 4.98e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 4.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044 389 YRRTGEYALAHAYIEKAINHTPTLELLYLEKAKIFAREGKTAEAAEQADLARRLDLQDKYLNSKAAKYYFRDNQVERGEA 468
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                 ...
gi 146103044 469 TMQ 471
Cdd:COG5010  144 ALQ 146
TPR_1 pfam00515
Tetratricopeptide repeat;
82-113 6.89e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 6.89e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 146103044   82 AWHALGMCQRLDKKFGEAVKAFKRALTFDPAN 113
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 23-117 6.92e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146103044  23 YSNREYSKALRTSECILRVVPDHVDTFAGRGLVLYNMERQEEGYESIKQAILLNPKSMVAWHALGMCQRLDKKFGEAVKA 102
Cdd:COG2956  155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234

                         90
                 ....*....|....*
gi 146103044 103 FKRALTFDPANTEVL 117
Cdd:COG2956  235 LRKALELDPSDDLLL 249
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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