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Conserved domains on  [gi|493658183|ref|WP_006609582|]
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MULTISPECIES: 50S ribosomal protein L34 [Nitrobacteraceae]

Protein Classification

50S ribosomal protein L34( domain architecture ID 10000747)

50S ribosomal protein L34 is involved in the regulation of the polyamine biosynthetic pathway

Gene Ontology:  GO:0005840|GO:0003735|GO:0006412
PubMed:  17086193

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 6.23e-08

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440000  Cd Length: 44  Bit Score: 42.77  E-value: 6.23e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 493658183  1 MKRTYQPSKLVRKRRHGFRARLATTGGRKVLAARRARGRKRLSA 44
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 6.23e-08

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 42.77  E-value: 6.23e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 493658183  1 MKRTYQPSKLVRKRRHGFRARLATTGGRKVLAARRARGRKRLSA 44
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
2-31 3.75e-07

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 40.45  E-value: 3.75e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 493658183   2 KRTYQPSKLVRKRRHGFRARLATTGGRKVL 31
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVL 30
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 1-44 2.04e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 36.34  E-value: 2.04e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 493658183   1 MKRTYQPSKLVRKRRHGFRARLATTGGRKVLAARRARGRKRLSA 44
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 6.23e-08

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 42.77  E-value: 6.23e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 493658183  1 MKRTYQPSKLVRKRRHGFRARLATTGGRKVLAARRARGRKRLSA 44
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
2-31 3.75e-07

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 40.45  E-value: 3.75e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 493658183   2 KRTYQPSKLVRKRRHGFRARLATTGGRKVL 31
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVL 30
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 1-44 2.04e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 36.34  E-value: 2.04e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 493658183   1 MKRTYQPSKLVRKRRHGFRARLATTGGRKVLAARRARGRKRLSA 44
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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