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Conserved domains on  [gi|491517202|ref|WP_005374834|]
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MULTISPECIES: HTH-type transcriptional regulator MalT [Vibrio]

Protein Classification

HTH-type transcriptional regulator MalT( domain architecture ID 11480306)

HTH-type transcriptional regulator MalT regulates transcription of the maltose regulon and thus the uptake and catabolism of malto-oligosaccharides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04841 PRK04841
HTH-type transcriptional regulator MalT;
1-902 0e+00

HTH-type transcriptional regulator MalT;


:

Pssm-ID: 235315 [Multi-domain]  Cd Length: 903  Bit Score: 1516.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202   1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVGWYSIDDSDNDGFRFVNYLLQ 80
Cdd:PRK04841   1 MLIPSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  81 ALNKATNFSCANAQKLAEKRQISSLRSLFSEVFAEMADFHQECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSR 160
Cdd:PRK04841  81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 161 AAPPLGTANLRVRDLMIEIGNEMLAFDTEETTRFFNQRIADGIDEDMANSLRTYVEGWPSAMQLIALQAQHQNRTLAQTV 240
Cdd:PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 241 ESVSQFNHAHLWDYLVEEVFDLLDHETRHFLMQVSVLDHFNDELVFALTQREDALGMIESLNRYGLFIYPLEGEQNWFRF 320
Cdd:PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRY 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 321 HNLFGEFLSHERQARIPQQEKDLHRNAAIAWLQQKAPHQAIHHAQKSNDKDLVVEILNEFGWKMFNQGELSTLESSINKL 400
Cdd:PRK04841 321 HPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 401 DDDLLFSHPKLTMLRAWLAQSQHRYNQVGHLLEEAEEEHKKRNIALDIHYQGQANALLAQVAINSNQPEKALELAELALS 480
Cdd:PRK04841 401 PWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 481 QLDNTIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEILIAQGYVQAAFELQDSAFRL 560
Cdd:PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 561 IEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGLQILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQH 640
Cdd:PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 641 LMKQSTYHVDWTANASLSLILFWQARGNTDAMQEWLNTAVRPESACNHFSQLQWRNIARAHINLGQYTDARAALDFLQGE 720
Cdd:PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 721 ARRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEALVMTNQTGMVGNFLIDGATIGGLLEKLSLRHELGDLERHRAQQ 800
Cdd:PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 800

                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 801 LMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQK 880
Cdd:PRK04841 801 ILREINQHHRHKFAHFDEAFVEKLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQK 880

                        890       900
                 ....*....|....*....|..
gi 491517202 881 LNIANRKEAIVTAENLLQLMGY 902
Cdd:PRK04841 881 LGIAHRQEAVQHAQDLLKMMGY 902
 
Name Accession Description Interval E-value
PRK04841 PRK04841
HTH-type transcriptional regulator MalT;
1-902 0e+00

HTH-type transcriptional regulator MalT;


Pssm-ID: 235315 [Multi-domain]  Cd Length: 903  Bit Score: 1516.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202   1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVGWYSIDDSDNDGFRFVNYLLQ 80
Cdd:PRK04841   1 MLIPSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  81 ALNKATNFSCANAQKLAEKRQISSLRSLFSEVFAEMADFHQECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSR 160
Cdd:PRK04841  81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 161 AAPPLGTANLRVRDLMIEIGNEMLAFDTEETTRFFNQRIADGIDEDMANSLRTYVEGWPSAMQLIALQAQHQNRTLAQTV 240
Cdd:PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 241 ESVSQFNHAHLWDYLVEEVFDLLDHETRHFLMQVSVLDHFNDELVFALTQREDALGMIESLNRYGLFIYPLEGEQNWFRF 320
Cdd:PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRY 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 321 HNLFGEFLSHERQARIPQQEKDLHRNAAIAWLQQKAPHQAIHHAQKSNDKDLVVEILNEFGWKMFNQGELSTLESSINKL 400
Cdd:PRK04841 321 HPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 401 DDDLLFSHPKLTMLRAWLAQSQHRYNQVGHLLEEAEEEHKKRNIALDIHYQGQANALLAQVAINSNQPEKALELAELALS 480
Cdd:PRK04841 401 PWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 481 QLDNTIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEILIAQGYVQAAFELQDSAFRL 560
Cdd:PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 561 IEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGLQILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQH 640
Cdd:PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 641 LMKQSTYHVDWTANASLSLILFWQARGNTDAMQEWLNTAVRPESACNHFSQLQWRNIARAHINLGQYTDARAALDFLQGE 720
Cdd:PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 721 ARRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEALVMTNQTGMVGNFLIDGATIGGLLEKLSLRHELGDLERHRAQQ 800
Cdd:PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 800

                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 801 LMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQK 880
Cdd:PRK04841 801 ILREINQHHRHKFAHFDEAFVEKLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQK 880

                        890       900
                 ....*....|....*....|..
gi 491517202 881 LNIANRKEAIVTAENLLQLMGY 902
Cdd:PRK04841 881 LGIAHRQEAVQHAQDLLKMMGY 902
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 452-787 1.10e-95

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 304.23  E-value: 1.10e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  452 GQANALLAQVAINSNQPEKALELAELALSQLDNTIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQAL 531
Cdd:pfam17874   1 GEIAALRAQLAISKGDAERALELAEQALALLPEDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  532 WAILQQSEILIAQGYVQAAFELQDSAFRLIEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGLQILENHSPSKH 611
Cdd:pfam17874  81 WALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  612 LHSYSMLARIAIGRGELDKAGKFIEHIQHLMKQSTYHVDWTANASLSLILFWQARGNTDAMQEWLNTAVRPESACNHFSQ 691
Cdd:pfam17874 161 VDAYVLLARIALAQGELEEALTLLRRAELLARQSFFHVDWLANAERVRVRLWLARGDLRAAVRWLRAAEPPSDADNHFLE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  692 LQWRNIARAHINLGQYTDARAALDFLQGEARRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEALVMTNQTGMVGNFL 771
Cdd:pfam17874 241 RELRNLARVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSLAEPEGYVRSFV 320

                         330
                  ....*....|....*.
gi 491517202  772 IDGATIGGLLEKLSLR 787
Cdd:pfam17874 321 DEGAPLARLLKRLLKR 336
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 839-893 8.22e-17

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 77.62  E-value: 8.22e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:COG2197   70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRTELVLLA 124
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 838-893 1.98e-16

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 74.10  E-value: 1.98e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 491517202   838 PLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:smart00421   3 SLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVRLA 58
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 839-895 6.01e-16

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 72.57  E-value: 6.01e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAEN 895
Cdd:cd06170    1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRTQLVAYAIR 57
 
Name Accession Description Interval E-value
PRK04841 PRK04841
HTH-type transcriptional regulator MalT;
1-902 0e+00

HTH-type transcriptional regulator MalT;


Pssm-ID: 235315 [Multi-domain]  Cd Length: 903  Bit Score: 1516.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202   1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVGWYSIDDSDNDGFRFVNYLLQ 80
Cdd:PRK04841   1 MLIPSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  81 ALNKATNFSCANAQKLAEKRQISSLRSLFSEVFAEMADFHQECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSR 160
Cdd:PRK04841  81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 161 AAPPLGTANLRVRDLMIEIGNEMLAFDTEETTRFFNQRIADGIDEDMANSLRTYVEGWPSAMQLIALQAQHQNRTLAQTV 240
Cdd:PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 241 ESVSQFNHAHLWDYLVEEVFDLLDHETRHFLMQVSVLDHFNDELVFALTQREDALGMIESLNRYGLFIYPLEGEQNWFRF 320
Cdd:PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRY 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 321 HNLFGEFLSHERQARIPQQEKDLHRNAAIAWLQQKAPHQAIHHAQKSNDKDLVVEILNEFGWKMFNQGELSTLESSINKL 400
Cdd:PRK04841 321 HPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 401 DDDLLFSHPKLTMLRAWLAQSQHRYNQVGHLLEEAEEEHKKRNIALDIHYQGQANALLAQVAINSNQPEKALELAELALS 480
Cdd:PRK04841 401 PWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 481 QLDNTIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEILIAQGYVQAAFELQDSAFRL 560
Cdd:PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 561 IEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGLQILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQH 640
Cdd:PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 641 LMKQSTYHVDWTANASLSLILFWQARGNTDAMQEWLNTAVRPESACNHFSQLQWRNIARAHINLGQYTDARAALDFLQGE 720
Cdd:PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 721 ARRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEALVMTNQTGMVGNFLIDGATIGGLLEKLSLRHELGDLERHRAQQ 800
Cdd:PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 800

                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 801 LMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQK 880
Cdd:PRK04841 801 ILREINQHHRHKFAHFDEAFVEKLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQK 880

                        890       900
                 ....*....|....*....|..
gi 491517202 881 LNIANRKEAIVTAENLLQLMGY 902
Cdd:PRK04841 881 LGIAHRQEAVQHAQDLLKMMGY 902
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 452-787 1.10e-95

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 304.23  E-value: 1.10e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  452 GQANALLAQVAINSNQPEKALELAELALSQLDNTIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQAL 531
Cdd:pfam17874   1 GEIAALRAQLAISKGDAERALELAEQALALLPEDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  532 WAILQQSEILIAQGYVQAAFELQDSAFRLIEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGLQILENHSPSKH 611
Cdd:pfam17874  81 WALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  612 LHSYSMLARIAIGRGELDKAGKFIEHIQHLMKQSTYHVDWTANASLSLILFWQARGNTDAMQEWLNTAVRPESACNHFSQ 691
Cdd:pfam17874 161 VDAYVLLARIALAQGELEEALTLLRRAELLARQSFFHVDWLANAERVRVRLWLARGDLRAAVRWLRAAEPPSDADNHFLE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  692 LQWRNIARAHINLGQYTDARAALDFLQGEARRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEALVMTNQTGMVGNFL 771
Cdd:pfam17874 241 RELRNLARVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSLAEPEGYVRSFV 320

                         330
                  ....*....|....*.
gi 491517202  772 IDGATIGGLLEKLSLR 787
Cdd:pfam17874 321 DEGAPLARLLKRLLKR 336
GerE pfam00196
Bacterial regulatory proteins, luxR family;
837-893 3.47e-17

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 76.08  E-value: 3.47e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 491517202  837 SPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:pfam00196   1 DSLSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSRVELVRMA 57
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 839-893 8.22e-17

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 77.62  E-value: 8.22e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:COG2197   70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRTELVLLA 124
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 838-893 1.98e-16

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 74.10  E-value: 1.98e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 491517202   838 PLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:smart00421   3 SLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVRLA 58
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 835-893 4.92e-16

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 73.46  E-value: 4.92e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491517202 835 RTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893
Cdd:COG5905    9 HPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNRVQAVVWA 67
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 839-895 6.01e-16

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 72.57  E-value: 6.01e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAEN 895
Cdd:cd06170    1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRTQLVAYAIR 57
MalT COG2909
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
125-243 1.44e-13

ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];


Pssm-ID: 442153 [Multi-domain]  Cd Length: 184  Bit Score: 70.12  E-value: 1.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 125 VVLDDYHLItnDEIHesMRFFLKHMPDNLTVVVTSRAAPplgTANLRVRdlmIEIGNEMLAFdtEETTRFFNQRIADgID 204
Cdd:COG2909    2 LVLDDYHLI--DDIH--LAFLLRHLPPNLHLVLASRTDP---LARLRAR---LELRADDLRR--EEAAALLRRRLLP-LS 68

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 491517202 205 EDMANSLRTYVEGWpSAMQLIALQAQHQNRTLAQTVESV 243
Cdd:COG2909   69 EEDAARLAERTEGW-ARLALDPEEALALLERLLALAEAA 106
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
784-899 2.44e-12

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 66.70  E-value: 2.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 784 LSLRHELGDLERHRAQQLMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLTQREWQVLGLIYSGFSNEQIAQEL 863
Cdd:COG2771   73 ALLLLLLLLLALLLLLALLALLAALLARLAALLLALALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARIL 152

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 491517202 864 DVAGTTIKTHIRNLYQKLNIANRKEAIVTAENLLQL 899
Cdd:COG2771  153 GISERTVRTHLKRIYRKLGVSSRAELVALALRLGLI 188
MalT COG2909
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
849-896 2.34e-11

ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];


Pssm-ID: 442153 [Multi-domain]  Cd Length: 184  Bit Score: 63.57  E-value: 2.34e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 491517202 849 LIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAENL 896
Cdd:COG2909  133 LLAEGLSNKEIAERLFISVNTVKTHLRNIYRKLGVRSRTEAVARAREL 180
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 839-895 2.80e-09

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 58.12  E-value: 2.80e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAEN 895
Cdd:PRK10651 156 LTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQ 212
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 457-758 1.04e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.43  E-value: 1.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 457 LLAQVAINSNQPEKALELAELALSqldntIYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALwailq 536
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALE-----LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL----- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 537 qSEILIAQGYVQAAFELqdsaFRLIEDQQLQHVPLHEFLLRIRAQVlwcwNRLDEAEECAYKGLQILENHSpskhlHSYS 616
Cdd:COG2956   83 -AQDYLKAGLLDRAEEL----LEKLLELDPDDAEALRLLAEIYEQE----GDWEKAIEVLERLLKLGPENA-----HAYC 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 617 MLARIAIGRGELDKAgkfIEHIQHLMKQSTYHVDwtanASLSLILFWQARGNTDAMQEWLNTAVRPESacNHFSQLqwRN 696
Cdd:COG2956  149 ELAELYLEQGDYDEA---IEALEKALKLDPDCAR----ALLLLAELYLEQGDYEEAIAALERALEQDP--DYLPAL--PR 217

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491517202 697 IARAHINLGQYTDARAALdflqgeaRRTNLITDTNRNLVVEAVLSARQKDEEQAKALLKEAL 758
Cdd:COG2956  218 LAELYEKLGDPEEALELL-------RKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
PRK10403 PRK10403
nitrate/nitrite response regulator protein NarP;
837-891 2.12e-08

nitrate/nitrite response regulator protein NarP;


Pssm-ID: 182431 [Multi-domain]  Cd Length: 215  Bit Score: 55.63  E-value: 2.12e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491517202 837 SPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIV 891
Cdd:PRK10403 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATI 206
FixJ COG4566
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ...
 839-885 2.16e-07

DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443623 [Multi-domain]  Cd Length: 196  Bit Score: 52.02  E-value: 2.16e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 491517202 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIAN 885
Cdd:COG4566  138 LTPREREVLDLVVAGLSNKQIARELGISPRTVEVHRANVMEKLGARS 184
COG3899 COG3899
Predicted ATPase [General function prediction only];
255-596 1.01e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 52.94  E-value: 1.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  255 LVEEVFDLLDHETRHFLMQVSVL-DHFNDELVFALTQR--EDALGMIESLNRYGLFIYPLEGEQNWFRF-HNLFgeflsh 330
Cdd:COG3899   579 LLAARLDRLPPAARRVLRLAAVLgRRFDLELLAAVLGLseAELAAALEELVAAGLLVPRGDAGGGRYRFrHDLV------ 652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  331 eRQA---RIPQQEK-DLHRNAAiAWLQQKAPHQA-------IHHAQKSNDKDLVVEILNEFGWKMFNQGELST----LES 395
Cdd:COG3899   653 -REAayaSLPPEERrALHRRIA-RALEARGPEPLeerlfelAHHLNRAGERDRAARLLLRAARRALARGAYAEalryLER 730

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  396 SINKLDDDLLFSHP-KLTMLRAWLAQSQHRYNQVGHLLEEAEEEHKKRNIALDIH--YQGQANALLAQVAINSNQPEKAL 472
Cdd:COG3899   731 ALELLPPDPEEEYRlALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHgnPPASARAYANLGLLLLGDYEEAY 810

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202  473 ELAELALSQLDNTIYRS-RIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEILIAQGYVQAAF 551
Cdd:COG3899   811 EFGELALALAERLGDRRlEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAA 890

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 491517202  552 ELQDSAFRLIEDQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECA 596
Cdd:COG3899   891 AAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAA 935
PRK10100 PRK10100
transcriptional regulator CsgD;
815-898 1.58e-06

transcriptional regulator CsgD;


Pssm-ID: 182241 [Multi-domain]  Cd Length: 216  Bit Score: 49.87  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 815 HFDEDFIEKLVNHPNVPELVRT--SPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVT 892
Cdd:PRK10100 130 YFTQKLASYLITHSGNYRYNSTesALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSW 209


                 ....*.
gi 491517202 893 AENLLQ 898
Cdd:PRK10100 210 ANDNLR 215
PRK15369 PRK15369
two component system response regulator;
817-890 2.05e-05

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 46.61  E-value: 2.05e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491517202 817 DEDFIEKLVNHPNVPELVrtspLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAI 890
Cdd:PRK15369 132 NREAILALLNADDTNPPL----LTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKLDVHKVAELL 201
PRK09935 PRK09935
fimbriae biosynthesis transcriptional regulator FimZ;
838-894 4.60e-05

fimbriae biosynthesis transcriptional regulator FimZ;


Pssm-ID: 182154 [Multi-domain]  Cd Length: 210  Bit Score: 45.64  E-value: 4.60e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491517202 838 PLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAE 894
Cdd:PRK09935 149 VLSNREVTILRYLVSGLSNKEIADQLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAK 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 507-715 4.87e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 4.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 507 LDRALPMMQQTEKLARQYQVYHQALWAILQQSEILIAQGYVQAAFELQDSAFRLIEDQQLqhvpLHEFLLRIRAQvlwcw 586
Cdd:COG3914   21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQAL----- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491517202 587 NRLDEAEECAYKGLQILENHSPSkhlhsYSMLARIAIGRGELDKAgkfIEHIQHLMKQSTYHVDWTANasLSLILfwQAR 666
Cdd:COG3914   92 GRYEEALALYRRALALNPDNAEA-----LFNLGNLLLALGRLEEA---LAALRRALALNPDFAEAYLN--LGEAL--RRL 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491517202 667 GNTDAMQEWLNTAVR--PESAcnhfsqLQWRNIARAHINLGQYTDARAALD 715
Cdd:COG3914  160 GRLEEAIAALRRALEldPDNA------EALNNLGNALQDLGRLEEAIAAYR 204
PRK10360 PRK10360
transcriptional regulator UhpA;
835-888 1.08e-04

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 44.20  E-value: 1.08e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491517202 835 RTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKE 888
Cdd:PRK10360 134 RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVE 187
PRK13719 PRK13719
conjugal transfer transcriptional regulator TraJ; Provisional
 819-890 4.59e-04

conjugal transfer transcriptional regulator TraJ; Provisional


Pssm-ID: 237479  Cd Length: 217  Bit Score: 42.41  E-value: 4.59e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491517202 819 DFIEKLVNHPNVpelvrTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAI 890
Cdd:PRK13719 129 SIIRGLSTNLEA-----KNKVTKYQNDVFILYSFGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDELL 195
fixJ PRK09390
response regulator FixJ; Provisional
 835-881 3.99e-03

response regulator FixJ; Provisional


Pssm-ID: 181815 [Multi-domain]  Cd Length: 202  Bit Score: 39.60  E-value: 3.99e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 491517202 835 RTSPLTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKL 881
Cdd:PRK09390 138 RIASLSERERQVMDGLVAGLSNKVIARDLDISPRTVEVYRANVMTKM 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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