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Conserved domains on  [gi|488758672|ref|WP_002681904|]
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MULTISPECIES: phosphoribosylaminoimidazole carboxylase [Treponema]

Protein Classification

AIR carboxylase family protein( domain architecture ID 10465056)

AIR carboxylase family protein may function as a 5-(carboxyamino)imidazole ribonucleotide mutase (PurE), to catalyze the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR), or as a phosphoribosylaminoimidazole carboxylase, catalyzing the reversible conversion of 5-aminoimidazole ribonucleotide (AIR) and CO2 to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)

CATH:  3.40.50.7700
Gene Ontology:  GO:0006189
SCOP:  4003688

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
5-149 1.01e-52

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


:

Pssm-ID: 459917  Cd Length: 147  Bit Score: 164.08  E-value: 1.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672    5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDrPKLYITIAGRSNALSGFVDGFVKGAT 84
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERG-LKVIIAGAGGAAHLPGMVAALTTLPV 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488758672   85 IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQK 149
Cdd:pfam00731  80 IGVPVKSSALDGLDsLLSIVQMPSGVPVATVAigGAKNAALLAAQILALSDPELAEKLKEYREEMAEK 147
 
Name Accession Description Interval E-value
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
5-149 1.01e-52

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 164.08  E-value: 1.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672    5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDrPKLYITIAGRSNALSGFVDGFVKGAT 84
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERG-LKVIIAGAGGAAHLPGMVAALTTLPV 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488758672   85 IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQK 149
Cdd:pfam00731  80 IGVPVKSSALDGLDsLLSIVQMPSGVPVATVAigGAKNAALLAAQILALSDPELAEKLKEYREEMAEK 147
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
3-150 5.73e-50

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 157.31  E-value: 5.73e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672     3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEAlDRPKLYITIAGRSNALSGFVDGFVKG 82
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAED-RGIKVIIAGAGGAAHLPGVVAALTTL 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488758672    83 ATIACPPPSDSFAGAD-IYSSLRMPSGISPALVL----EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKI 150
Cdd:smart01001  80 PVIGVPVSSGYLGGLDsLLSIVQMPSGIPVATVAigidGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
5-158 1.63e-44

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 143.53  E-value: 1.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672    5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEAlDRPKLYITIAGRSNALSGFVDGFVKGAT 84
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEE-RGIKVIIAGAGGAAHLPGMVAALTPLPV 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488758672   85 IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLK 158
Cdd:TIGR01162  80 IGVPVPSKALSGLDsLLSIVQMPSGVPVATVAigNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKLE 156
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
3-159 7.39e-28

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 101.29  E-value: 7.39e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672   3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEhvvsMLKEY--EALDRP-KLYITIAGRSNALSGFVDGF 79
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPD----RLFEYakTAEERGlKVIIAGAGGAAHLPGMVAAK 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672  80 vkgaT----IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIE 152
Cdd:COG0041   77 ----TtlpvIGVPVKSKALDGLDsLLSIVQMPPGVPVATVAigGAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLA 152

                 ....*..
gi 488758672 153 DDSKLKR 159
Cdd:COG0041  153 KDEELQE 159
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-157 6.42e-20

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 85.11  E-value: 6.42e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672   2 RPLVIILMGSSSD---MGHAEKIaseLKTFGIEYAIRIGSAHKTAEhvvsMLKEY--EALDRpKLYITIAGRSNA--LSG 74
Cdd:PLN02948 410 TPLVGIIMGSDSDlptMKDAAEI---LDSFGVPYEVTIVSAHRTPE----RMFSYarSAHSR-GLQVIIAGAGGAahLPG 481
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672  75 FVDGFVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKII 151
Cdd:PLN02948 482 MVASMTPLPVIGVPVKTSHLDGLDsLLSIVQMPRGVPVATVAigNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVL 561

                 ....*.
gi 488758672 152 EDDSKL 157
Cdd:PLN02948 562 EKAEKL 567
 
Name Accession Description Interval E-value
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
5-149 1.01e-52

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 164.08  E-value: 1.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672    5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDrPKLYITIAGRSNALSGFVDGFVKGAT 84
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERG-LKVIIAGAGGAAHLPGMVAALTTLPV 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488758672   85 IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQK 149
Cdd:pfam00731  80 IGVPVKSSALDGLDsLLSIVQMPSGVPVATVAigGAKNAALLAAQILALSDPELAEKLKEYREEMAEK 147
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
3-150 5.73e-50

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 157.31  E-value: 5.73e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672     3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEAlDRPKLYITIAGRSNALSGFVDGFVKG 82
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAED-RGIKVIIAGAGGAAHLPGVVAALTTL 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488758672    83 ATIACPPPSDSFAGAD-IYSSLRMPSGISPALVL----EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKI 150
Cdd:smart01001  80 PVIGVPVSSGYLGGLDsLLSIVQMPSGIPVATVAigidGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
5-158 1.63e-44

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 143.53  E-value: 1.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672    5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEAlDRPKLYITIAGRSNALSGFVDGFVKGAT 84
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEE-RGIKVIIAGAGGAAHLPGMVAALTPLPV 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488758672   85 IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLK 158
Cdd:TIGR01162  80 IGVPVPSKALSGLDsLLSIVQMPSGVPVATVAigNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKLE 156
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
3-159 7.39e-28

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 101.29  E-value: 7.39e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672   3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEhvvsMLKEY--EALDRP-KLYITIAGRSNALSGFVDGF 79
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPD----RLFEYakTAEERGlKVIIAGAGGAAHLPGMVAAK 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672  80 vkgaT----IACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIE 152
Cdd:COG0041   77 ----TtlpvIGVPVKSKALDGLDsLLSIVQMPPGVPVATVAigGAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLA 152

                 ....*..
gi 488758672 153 DDSKLKR 159
Cdd:COG0041  153 KDEELQE 159
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-157 6.42e-20

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 85.11  E-value: 6.42e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672   2 RPLVIILMGSSSD---MGHAEKIaseLKTFGIEYAIRIGSAHKTAEhvvsMLKEY--EALDRpKLYITIAGRSNA--LSG 74
Cdd:PLN02948 410 TPLVGIIMGSDSDlptMKDAAEI---LDSFGVPYEVTIVSAHRTPE----RMFSYarSAHSR-GLQVIIAGAGGAahLPG 481
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488758672  75 FVDGFVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKNAALLAARIFSLYDKEIADSVKSYMESNAQKII 151
Cdd:PLN02948 482 MVASMTPLPVIGVPVKTSHLDGLDsLLSIVQMPRGVPVATVAigNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVL 561

                 ....*.
gi 488758672 152 EDDSKL 157
Cdd:PLN02948 562 EKAEKL 567
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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