|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
226-427 |
2.55e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 2.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 305
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 385
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 41871960 386 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-419 |
1.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 99.61 E-value: 1.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 304
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 305 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 384
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 41871960 385 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 419
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
241-514 |
9.12e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 96.91 E-value: 9.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 241 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 318
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 319 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 398
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 399 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 478
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601
|
250 260 270
....*....|....*....|....*....|....*..
gi 41871960 479 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 514
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
241-510 |
1.37e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 93.44 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 241 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 320
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 321 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 399
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 400 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 479
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693
|
250 260 270
....*....|....*....|....*....|.
gi 41871960 480 tvnttlrNLGALYRRQGKLEAAETLEECALR 510
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
221-426 |
7.15e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.13 E-value: 7.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 221 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 299
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 300 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 375
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 41871960 376 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 426
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
219-416 |
2.50e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 219 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 297
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 298 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 377
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 41871960 378 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 416
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
312-386 |
2.58e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 76.66 E-value: 2.58e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871960 312 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 386
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-396 |
8.52e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 8.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 305
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 381
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 41871960 382 LAIYEGQLGPDNPNV 396
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
227-421 |
1.13e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.89 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 227 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 306
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 307 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 386
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 41871960 387 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 421
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
396-514 |
1.72e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 396 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 475
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41
|
90 100 110
....*....|....*....|....*....|....*....
gi 41871960 476 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 514
Cdd:pfam13424 42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
322-436 |
1.80e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 47.99 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 322 LYgKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 376
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871960 377 ------------YYQRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGSVD 436
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
313-345 |
1.20e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|...
gi 41871960 313 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 345
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
234-314 |
2.51e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.14 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 234 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 307
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 41871960 308 DHPAVAA 314
Cdd:NF040586 814 DHPDTVA 820
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
51-166 |
6.77e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 51 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQvmlalaSHLSTVESEKQKLRAQVRRL 130
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQEEAEELQEELEEL 120
|
90 100 110
....*....|....*....|....*....|....*.
gi 41871960 131 CQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 166
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
51-166 |
7.73e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 51 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 129
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 41871960 130 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 166
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
282-427 |
1.07e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.57 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 282 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 357
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 358 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 402
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264
|
170 180
....*....|....*....|....*
gi 41871960 403 LASCYLKQGKYAEAETLYKEILTRA 427
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
227-410 |
4.61e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.07 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 227 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 306
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 307 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 376
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 41871960 377 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 410
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
226-427 |
2.55e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 2.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 305
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 385
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 41871960 386 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-419 |
1.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 99.61 E-value: 1.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 304
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 305 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 384
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 41871960 385 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 419
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
241-514 |
9.12e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 96.91 E-value: 9.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 241 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 318
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 319 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 398
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 399 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 478
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601
|
250 260 270
....*....|....*....|....*....|....*..
gi 41871960 479 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 514
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
200-427 |
1.13e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.60 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 200 EEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRghPDVATMLNILAL 279
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAL--LLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 280 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLN 359
Cdd:COG3914 87 LLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871960 360 NLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
152-423 |
3.36e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 3.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 152 EQAVAQLEEEKKHLEFLGQLRQYDEDGHTSEEKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPARLRT 231
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 232 LHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHpa 311
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALA-----LNPDF-- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 312 vAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgp 391
Cdd:COG3914 146 -AEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL------- 209
|
250 260 270
....*....|....*....|....*....|..
gi 41871960 392 dNPNVARTKNNLASCYLKQGKYAEAETLYKEI 423
Cdd:COG3914 210 -DPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
241-510 |
1.37e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 93.44 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 241 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 320
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 321 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 399
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 400 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 479
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693
|
250 260 270
....*....|....*....|....*....|.
gi 41871960 480 tvnttlrNLGALYRRQGKLEAAETLEECALR 510
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
221-426 |
7.15e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.13 E-value: 7.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 221 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 299
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 300 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 375
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 41871960 376 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 426
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
219-416 |
2.50e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 219 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 297
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 298 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 377
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 41871960 378 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 416
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
226-424 |
2.54e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.67 E-value: 2.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 305
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 385
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 41871960 386 EGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 424
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
312-386 |
2.58e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 76.66 E-value: 2.58e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871960 312 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 386
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
239-512 |
3.56e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.08 E-value: 3.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 239 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNN 318
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD-----PDDAEA---LRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 319 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVAR 398
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 399 TKNNLASCYLKQGKYAEAETLYKEILTRahvqefgsvDDDHKPIwmhaeeREEMSKSRHHEGGtpYAEYGGWYKACKVSS 478
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQ---------DPDYLPA------LPRLAELYEKLGD--PEEALELLRKALELD 242
|
250 260 270
....*....|....*....|....*....|....
gi 41871960 479 PTvNTTLRNLGALYRRQGKLEAAETLEECALRSR 512
Cdd:COG2956 243 PS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
269-345 |
2.83e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 73.96 E-value: 2.83e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41871960 269 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 345
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-396 |
8.52e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 8.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 305
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 381
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 41871960 382 LAIYEGQLGPDNPNV 396
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
238-539 |
9.58e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 9.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 238 QYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHPAVaatLN 317
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-----RDPDRAEA---LL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 318 NLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVA 397
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 398 RTKNNLASCYLKQGKYAEAETLYKEILtrahvqefgSVDDDHKPIWMHAEEREEMSKSrhheggtpYAEYGGWYKACKVS 477
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKAL---------KLDPDCARALLLLAELYLEQGD--------YEEAIAALERALEQ 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 41871960 478 SPTVNTTLRNLGALYRRQGKLEAAET-LEECAlrsrRQGTDPISQTKVAELLGESDGRRTSQE 539
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALElLRKAL----ELDPSDDLLLALADLLERKEGLEAALA 266
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
353-427 |
4.21e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 67.80 E-value: 4.21e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871960 353 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
277-427 |
2.21e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.52 E-value: 2.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 277 LALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAK 356
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD-----PDNPEA---FALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 41871960 357 QLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYL---RLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
227-385 |
5.55e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.37 E-value: 5.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 227 ARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlg 306
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871960 307 PDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIREkvlgtNHPDVakqLNNLALLCQNQGKYEAVERYYQRALAIY 385
Cdd:COG4783 69 PDEPEA---RLNLGLALLKAGDYDEALALLEKALKLDP-----EHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
312-353 |
7.60e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 62.90 E-value: 7.60e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 41871960 312 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 353
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
228-303 |
1.65e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 63.18 E-value: 1.65e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41871960 228 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRES 303
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
322-424 |
7.58e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 7.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 322 LYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYyQRALAIyegqlgpdNPNVARTKN 401
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 41871960 402 NLASCYLKQGKYAEAETLYKEIL 424
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
226-389 |
2.10e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 305
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 306 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 385
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
....
gi 41871960 386 EGQL 389
Cdd:COG0457 217 AALA 220
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
271-427 |
2.69e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 2.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 271 ATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtn 350
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41871960 351 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-384 |
7.06e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 7.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 280 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLcQRALEIrekvlgtnHPDVAKQLN 359
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*
gi 41871960 360 NLALLCQNQGKYEAVERYYQRALAI 384
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
311-427 |
2.74e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 311 AVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlg 390
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....*..
gi 41871960 391 PDNPNVArtkNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
226-384 |
3.00e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 305
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-----L 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871960 306 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 384
Cdd:COG5010 84 DPNNPEL---YYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
234-421 |
7.16e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 7.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 234 NLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPAVA 313
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 314 ATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALA---------- 383
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALEldpndperal 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 41871960 384 ---IYEGQLGPDnPNVARTKNNLASCYLKQGKYAEAETLYK 421
Cdd:COG4785 180 wlyLAERKLDPE-KALALLLEDWATAYLLQGDTEEARELFK 219
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
227-421 |
1.13e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.89 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 227 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 306
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 307 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 386
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 41871960 387 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 421
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
309-427 |
3.11e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 3.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 309 HPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegq 388
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL---- 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 41871960 389 lgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:COG4235 81 ----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
239-347 |
3.66e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 3.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 239 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLlNDALSIrestlgpdHPAVAATLNN 318
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 41871960 319 LAVLYGKRGKYKEAEPLCQRALEIREKVL 347
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
270-310 |
5.33e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 52.12 E-value: 5.33e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 41871960 270 VATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHP 310
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
325-426 |
1.66e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 325 KRGKYKEAEPLCQRALEirekvlgtNHPD---VAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKN 401
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK--------RYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71
|
90 100
....*....|....*....|....*
gi 41871960 402 NLASCYLKQGKYAEAETLYKEILTR 426
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKK 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
265-425 |
3.68e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 3.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 265 RGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRgKYKEAEPLCQRALEIRe 344
Cdd:TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA- 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 345 kvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 424
Cdd:TIGR02917 834 -------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
.
gi 41871960 425 T 425
Cdd:TIGR02917 899 N 899
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
215-342 |
4.53e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 215 ATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLL 294
Cdd:COG5010 40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 41871960 295 NDALSirestLGPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 342
Cdd:COG5010 112 EKALA-----LSPDNPNA---YSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
183-383 |
8.13e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 8.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 183 EKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlert 262
Cdd:COG4785 27 AALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 263 sgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHpavAATLNNLAVLYGKRGKYKEAEPLCQRALEI 342
Cdd:COG4785 103 ----DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD-----PDY---AYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 41871960 343 REK----------VLGTNHPDVAKQL--NNLALLCQNQGKYEAVERYYQRALA 383
Cdd:COG4785 171 DPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
226-342 |
6.99e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.03 E-value: 6.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 305
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 41871960 306 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 342
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
226-342 |
1.38e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLertsgrghPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 305
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 41871960 306 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 342
Cdd:COG4235 81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
281-405 |
2.48e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 281 YRDQNKYKEAAHLLNDALSirestLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTNHPDVAKQLNN 360
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 41871960 361 LALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKNNLAS 405
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
178-427 |
4.69e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 178 GHTSEEKEGDATKDSLDDLFPNEE--------EEDPSNG----------LSRGQGATA------AQQGGYEiPARLRTLh 233
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAiiqlknalQKDPNDAearfllgkiyLALGDYAAAekelrkALSLGYP-KNQVLPL- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 234 nLVIQYAAQGRYEvavplckQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPAVA 313
Cdd:TIGR02917 96 -LARAYLLQGKFQ-------QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 314 ATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDN 393
Cdd:TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAI-----ALRPNN 226
|
250 260 270
....*....|....*....|....*....|....
gi 41871960 394 PNVartKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:TIGR02917 227 IAV---LLALATILIEAGEFEEAEKHADALLKKA 257
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
229-269 |
6.69e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 43.26 E-value: 6.69e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 41871960 229 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD 269
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
354-395 |
1.41e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 42.49 E-value: 1.41e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 41871960 354 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPN 395
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
396-514 |
1.72e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 396 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 475
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41
|
90 100 110
....*....|....*....|....*....|....*....
gi 41871960 476 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 514
Cdd:pfam13424 42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
322-436 |
1.80e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 47.99 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 322 LYgKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 376
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871960 377 ------------YYQRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGSVD 436
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
313-345 |
2.35e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.64 E-value: 2.35e-05
10 20 30
....*....|....*....|....*....|...
gi 41871960 313 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 345
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
351-428 |
3.01e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 3.01e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871960 351 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDNPNVartKNNLASCYLKQGKYAEAETLYKEILTRAH 428
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKAL-----RLDPDNADA---LLDLAEALLAAGDTEEAEELLERALALDP 82
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
313-345 |
1.20e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|...
gi 41871960 313 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 345
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
234-314 |
2.51e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.14 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 234 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 307
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 41871960 308 DHPAVAA 314
Cdd:NF040586 814 DHPDTVA 820
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
273-424 |
3.38e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 273 MLNILALVYRDQNKYKEAAHLLNDALSIREStlgpdhpavaATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP 352
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLF----------AAVLALAIALADLALALAAAALAAAALAAERIDRALALP 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 41871960 353 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 424
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
277-342 |
3.52e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.52e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41871960 277 LALVYRDQNKYKEAAHLLNDALsiresTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 342
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
355-386 |
4.09e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 4.09e-04
10 20 30
....*....|....*....|....*....|..
gi 41871960 355 AKQLNNLALLCQNQGKYEAVERYYQRALAIYE 386
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
360-427 |
5.88e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 5.88e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871960 360 NLALLCQNQGKYEAVERYYQRALAiyegqLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
51-166 |
6.77e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 51 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQvmlalaSHLSTVESEKQKLRAQVRRL 130
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQEEAEELQEELEEL 120
|
90 100 110
....*....|....*....|....*....|....*.
gi 41871960 131 CQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 166
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
315-348 |
7.57e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.13 E-value: 7.57e-04
10 20 30
....*....|....*....|....*....|....
gi 41871960 315 TLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLG 348
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
51-166 |
7.73e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 51 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 129
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 41871960 130 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 166
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
72-427 |
8.21e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 8.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 72 LQQGGHEEGLVH-EKARQLrrsmeniELGLSEAQVMLALaSHLSTVESEKQklRAQVRRLCQE---NQWLRDELAGTQQR 147
Cdd:TIGR02917 408 LSQGDPSEAIADlETAAQL-------DPELGRADLLLIL-SYLRSGQFDKA--LAAAKKLEKKqpdNASLHNLLGAIYLG 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 148 LQRSEQAVAQLEE----EKKHLEFLGQLRQYDEDghtseEKEGDATKDSLDDLFpneeEEDPSN--------GLSRGQGA 215
Cdd:TIGR02917 478 KGDLAKAREAFEKalsiEPDFFPAAANLARIDIQ-----EGNPDDAIQRFEKVL----TIDPKNlrailalaGLYLRTGN 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 216 TAAQQGGYEIPARLrtlHNLVIQ-YAAQGRYEVAVPLCKQALEDLERTSGrGHPDVATMLNILALVYRDQNKYKEAAHLL 294
Cdd:TIGR02917 549 EEEAVAWLEKAAEL---NPQEIEpALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 295 NDALSIRestlgPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIRE--------------------------KVLG 348
Cdd:TIGR02917 625 KKLLALQ-----PDSALA---LLLLADAYAVMKNYAKAITSLKRALELKPdnteaqiglaqlllaakrtesakkiaKSLQ 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 349 TNHPDVA---KQLNNLALLcqnQGKYEAVERYYQRALAIYEG-----QLG--------------------PDNPNVARTK 400
Cdd:TIGR02917 697 KQHPKAAlgfELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktleawlKTHPNDAVLR 773
|
410 420
....*....|....*....|....*..
gi 41871960 401 NNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKA 800
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
282-427 |
1.07e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.57 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 282 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 357
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 358 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 402
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264
|
170 180
....*....|....*....|....*
gi 41871960 403 LASCYLKQGKYAEAETLYKEILTRA 427
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
226-305 |
1.17e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 226 PARLRTLHNLVIQYAAQGRYEVAVPLcKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 305
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
237-332 |
1.53e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 237 IQYAAQGRYEVAVPLCKQALEDlertsgrgHPD---VATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHPAVA 313
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKR--------YPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAP 67
|
90
....*....|....*....
gi 41871960 314 ATLNNLAVLYGKRGKYKEA 332
Cdd:COG1729 68 DALLKLGLSYLELGDYDKA 86
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
238-437 |
1.96e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.76 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 238 QYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrESTLGPDHPAVAATLn 317
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQL-GRQWEPDAAVDAYVL- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 318 nLAVLYGKRGKYKEAEPLCQRALEI-REKVLGTNHPDVAKQLnnLALLCQNQGKYEAVEryyqRALAIYEGQLGPDNPNV 396
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLaRQSFFHVDWLANAERV--RVRLWLARGDLRAAV----RWLRAAEPPSDADNHFL 239
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 41871960 397 ARTKNNLASCYLKQGKYAEAETLYKEILTRAhvQEFGSVDD 437
Cdd:pfam17874 240 ERELRNLARVLLALGRFDDALSLLERLQNLA--EQLGRVRS 278
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
257-389 |
2.38e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.12 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 257 EDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLC 336
Cdd:TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 41871960 337 QRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRA--LAIYEGQL 389
Cdd:TIGR00990 532 EKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAaeLARTEGEL 578
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
368-424 |
3.23e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 3.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 41871960 368 QGKYEAVERYYQRALAIYegqlgPDNPNVartKNNLASCYLKQGKYAEAETLYKEIL 424
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
396-439 |
3.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.56 E-value: 3.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 41871960 396 VARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDH 439
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG---PDH 40
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
397-424 |
3.67e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 3.67e-03
10 20
....*....|....*....|....*...
gi 41871960 397 ARTKNNLASCYLKQGKYAEAETLYKEIL 424
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
355-384 |
3.71e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 3.71e-03
10 20 30
....*....|....*....|....*....|
gi 41871960 355 AKQLNNLALLCQNQGKYEAVERYYQRALAI 384
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
397-427 |
4.13e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.13e-03
10 20 30
....*....|....*....|....*....|.
gi 41871960 397 ARTKNNLASCYLKQGKYAEAETLYKEILTRA 427
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
227-410 |
4.61e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.07 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 227 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 306
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 307 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 376
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 41871960 377 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 410
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
239-298 |
6.05e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 6.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 239 YAAQGRYEVAVPLCKQALEdlertSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 298
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
45-169 |
6.20e-03 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 39.84 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 45 RLVSQGLEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQVMLALASHLSTVESekQKLR 124
Cdd:COG5283 6 GAVDKPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDT--RQLS 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 41871960 125 AQVRRLCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLEFLG 169
Cdd:COG5283 84 AAQRRLRSSLEQTNRQLERQQQRLARLGARQDRLKAARARLQRLA 128
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
483-514 |
6.74e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 6.74e-03
10 20 30
....*....|....*....|....*....|..
gi 41871960 483 TTLRNLGALYRRQGKLEAAETLEECALRSRRQ 514
Cdd:pfam13374 3 SSLNNLANALRAQGRYDEAEELLEEALAIRER 34
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
265-424 |
9.09e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.74 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 265 RGHPDVATmlnILALVYRDQNKYKEAAHLLNDALSIREStlgpdhpavaatlNNLAVLYG--KRGKYKEAEPLCQRALEi 342
Cdd:COG3071 190 RRDPELAA---AYARALIALGDHDEAERLLREALKRQWD-------------PRLVRLYGrlQGGDPAKQLKRAEKWLK- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871960 343 rekvlgtNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlGPDnpnvARTKNNLASCYLKQGKYAEAETLYKE 422
Cdd:COG3071 253 -------KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL-----RPS----AEAYAELARLLEQLGDPEEAAEHYRK 316
|
..
gi 41871960 423 IL 424
Cdd:COG3071 317 AL 318
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
358-392 |
9.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 34.05 E-value: 9.51e-03
10 20 30
....*....|....*....|....*....|....*
gi 41871960 358 LNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPD 392
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| |
