|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
214-278 |
1.49e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.36 E-value: 1.49e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 278
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.29e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.29e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
214-279 |
4.31e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.06 E-value: 4.31e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 214 IGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 279
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.23e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.23e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
658-1276 |
7.81e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.66 E-value: 7.81e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 658 KEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQ------------EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEE 725
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDI-LNELERQLKSLErqaekaerykelKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 726 KLLDLDA-----------LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLS 794
Cdd:TIGR02168 254 ELEELTAelqeleekleeLRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 795 EVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLI 874
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 875 KAKEKLENDIAEIMKMSGDNSSQLTKMndELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQEAAKKHEEE 954
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELE----EAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 955 KKELERKLSDLEKKMETSHNQCQELKARYERA------------TSETKTKHEEILQ-NLQKTLLDTEDKLKGA----RE 1017
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlselisvDEGYEAAIEAALGgRLQAVVVENLNAAKKAiaflKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1018 ENSG-----LLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE---------DTKQTNAKLQNELD----- 1078
Cdd:TIGR02168 568 NELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNALELAKKLRpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1079 -TL------------KENNLKNVEELNKSKELLTVEnQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD 1145
Cdd:TIGR02168 648 vTLdgdlvrpggvitGGSAKTNSSILERRREIEELE-EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1146 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAK---- 1221
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALReald 806
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 1222 SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQ 1276
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1118 |
1.20e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.89 E-value: 1.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLE---LEAKMDQLRTMVEAADREKVELL 428
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 429 NQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAgdvdmSLSLLQEISS 508
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-----VAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 509 LQEKLEVTRTdhqrEITSLKEHFG-AREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIAlwksKLETAIAS 587
Cdd:TIGR02168 398 LNNEIERLEA----RLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE----ALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 588 HQQAMEELkVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQD------------SERAAHAKEME-ALRAKLM 654
Cdd:TIGR02168 470 LEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseliSVDEGYEAAIEaALGGRLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 655 KVIKEKENSLEAIRSKLDKAEDQHLVEMEdtLNKLQEAEIKVKELEVLQAK--CNEQTKVIDNFTSQLKATEEKLLDL-- 730
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLP--LDSIKGTEIQGNDREILKNIegFLGVAKDLVKFDPKLRKALSYLLGGvl 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 731 ------DALRKASSEGKSEM-------------------KKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELK 785
Cdd:TIGR02168 627 vvddldNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 786 LTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKfre 865
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE--- 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 866 kdereeqlikaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 945
Cdd:TIGR02168 784 -----------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 946 eaakkheeEKKELERKLSDLEKKMETSHNQCQELKARYERAtSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQE 1025
Cdd:TIGR02168 853 --------DIESLAAEIEELEELIEELESELEALLNERASL-EEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1026 LEELRKQADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLT 1099
Cdd:TIGR02168 924 LAQLELRLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
|
810
....*....|....*....
gi 38044112 1100 VENQKMEEFRKEIETLKQA 1118
Cdd:TIGR02168 1004 FLTAQKEDLTEAKETLEEA 1022
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
514-1267 |
3.45e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 91.36 E-value: 3.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 514 EVTRTDHQREITSLKEHFGAREETHQKEIKALytatEKLSKENESLKsKLEHANKENSDVIALWKSKLETAIASHQQAME 593
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKA----EEARKAEEAKK-KAEDARKAEEARKAEDARKAEEARKAEDAKRV 1154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 594 ELKVSFSKGLGTETAEFAELKTQIEKMRldyqhEIENLQNQQDSERAAHAKEMEALRAKlmkvikEKENSLEAIRSKLDK 673
Cdd:PTZ00121 1155 EIARKAEDARKAEEARKAEDAKKAEAAR-----KAEEVRKAEELRKAEDARKAEAARKA------EEERKAEEARKAEDA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 674 AEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEA 753
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 754 AEKQIKHLEIEKNAESSKASSITRELQGRELKL-TNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETV 832
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 833 NKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE--- 909
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeak 1463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 910 ------RDVEELQLKLTKANEnASFLQKSIEDMTVKAEQSQQEAAKKH-EEEKKELERKLSDLEKKMETSHNQCQELKAR 982
Cdd:PTZ00121 1464 kkaeeaKKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 983 YERATSETKTKHEEILQNLQKTLLDTEDKlkgAREENSGLLQELEELRkQADKAKaaqtAEDAMQIMEQMTKEKTETLAS 1062
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKK---AEEDKNMALRKAEEAK-KAEEAR----IEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1063 LEDTKQTNAKLQNEldtlkENNLKNVEELNKSKElltVENQKMEEFRKEIETLKQAAAQKSQQlsalQEENVKLAEELGR 1142
Cdd:PTZ00121 1615 AEEAKIKAEELKKA-----EEEKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEEAKK----AEEDKKKAEEAKK 1682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1143 SRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASlQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1222
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 38044112 1223 LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQAD 1267
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
405-1190 |
4.53e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 405 ELEAKMDQLRTMVEAADREKvELLNQLEEEKRKVEDLQFRVEEESITKgdLEVATVSEKSRIMELEKDLALRVQEVAELR 484
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEE--LQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 485 -RRLESNKPAGDVDMSL-SLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEkLSKENESLKSK 562
Cdd:TIGR02168 274 lEVSELEEEIEELQKELyALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 563 LEHANKENSDVIALWKSkLETAIASHQQAMEELKVSFSKGLGTETAEFAEL------KTQIEKMRLDYQHEIE-NLQNQQ 635
Cdd:TIGR02168 353 LESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQIASLNNEIerlearLERLEDRRERLQQEIEeLLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 636 DSERAAHAKEMEALRAKLMKVIKEKENsLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKcneqtkvIDN 715
Cdd:TIGR02168 432 EAELKELQAELEELEEELEELQEELER-LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN-------LEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 716 FTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAA-EKQIKHLEIEKNAESSKA-SSITRELQGR----ELKLTNL 789
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlGGRLQAVVVENLNAAKKAiAFLKQNELGRvtflPLDSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 790 QENLSEVSQVKETLEKELQILKE--KFAEASEEAVS-------VQRSMQETVNKLHQKEEQFNMLSSD------------ 848
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDlvKFDPKLRKALSyllggvlVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvitg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 849 ---------------LEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVE 913
Cdd:TIGR02168 664 gsaktnssilerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 914 ELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKkelerklsDLEKKMETSHNQCQELKARYERATSETKTK 993
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE--------ELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 994 HEEiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQtaEDAMQIMEQMTKEKTETLASLEDTKQTNAKL 1073
Cdd:TIGR02168 816 NEE-AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI--EELEELIEELESELEALLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1074 QNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEvtSHQKL 1153
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED--DEEEA 970
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 38044112 1154 EEERSVLNNQLLEM--------------KKRE---SKFIKDADEEKASLQKSIS 1190
Cdd:TIGR02168 971 RRRLKRLENKIKELgpvnlaaieeyeelKERYdflTAQKEDLTEAKETLEEAIE 1024
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-1309 |
2.30e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 85.17 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 614 KTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKV------IKEKENSLEAIRSKLDKAEDQHLVEMEDTLN 687
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLqtklqeMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 688 KLQEAE-IKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAL--RKASSEGKSEMKKLRQQLEAAEKQIKHLEIE 764
Cdd:pfam15921 153 ELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 765 KNAESSKASSITRELQGRELKLTN-----LQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQ----ETVNKL 835
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 836 HQKEEQFNMLSSDLEKLRENLADMEAKFREK-DEREEQLIKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL--RLKE 909
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhkREKE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 910 RDVEELQLKL-----TKANENASFLQKSIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQelkARYE 984
Cdd:pfam15921 393 LSLEKEQNKRlwdrdTGNSITIDHLRRELDDRNMEVQR----------------------LEALLKAMKSECQ---GQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 985 RATSETKTKHE--EILQNLQKTLLDTEDKLKGAREENSGLLQELEEL-RKQADKAKAAQTAEDAMqimEQMTKEKTETLA 1061
Cdd:pfam15921 448 RQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSeRTVSDLTASLQEKERAI---EATNAEITKLRS 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1062 SLEDTKQTNAKLQNEldtlkENNLKNVE-ELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1140
Cdd:pfam15921 525 RVDLKLQELQHLKNE-----GDHLRNVQtECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEI 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1141 GRSRDEVTSHQKLEEERsvlNNQLLEMKKReskfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE-NAS 1219
Cdd:pfam15921 600 NDRRLELQEFKILKDKK---DAKIRELEAR----VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSL 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1220 AKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVdlQRKNQD-LKMKV 1298
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA--KRGQIDaLQSKI 750
|
730
....*....|.
gi 38044112 1299 EMMSEAALNGN 1309
Cdd:pfam15921 751 QFLEEAMTNAN 761
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
413-1250 |
5.47e-16 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 83.87 E-value: 5.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 413 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatVSEKSRIMELEKDLALRVQEVAELRRRLESNKP 492
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY----------YQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 493 AGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSd 572
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 573 vialwksKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdsERAAHAKEMEALRAK 652
Cdd:pfam02463 325 -------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK--LESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 653 LMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDA 732
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 733 LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKltnlqenlsevsqVKETLEKELQILKE 812
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII-------------SAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 813 KFAEASEEAVSVQRSmQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSG 892
Cdd:pfam02463 540 NYKVAISTAVIVEVS-ATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADED 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 893 DNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETS 972
Cdd:pfam02463 619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 973 HNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQM 1052
Cdd:pfam02463 699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1053 TKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEE 1132
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1133 NVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALL-TEKDAELEKLRNEVT 1211
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILLKYEEEPE 938
|
810 820 830
....*....|....*....|....*....|....*....
gi 38044112 1212 VLRGENASAKSLhsvvqtLESDKVKLELKVKNLELQLKE 1250
Cdd:pfam02463 939 ELLLEEADEKEK------EENNKEEEEERNKRLLLAKEE 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
468-1294 |
6.96e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 6.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 468 ELEKDL------ALRVQEVAELRRRLEsnkpagDVDMSLSLLqEISSLQEKLEVTrtdhQREITSLKEhfgaREETHQKE 541
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 542 IKALYTATEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGlgteTAEFAELKTQIEKMR 621
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 622 LDY---QHEIENLQNQQDSERAAHaKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhlveMEDTLNKLQEAEIKVKE 698
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAEL-EELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 699 LEVLQAKcNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIE---KNAESSKASSI 775
Cdd:TIGR02168 412 LEDRRER-LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAldaAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 776 TRELQGRELKLTNLQENLSEVSQVKETLEKELQILKE--KFAEASEEAVSV--QRSMQ-----------ETVNKLHQKEE 840
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEliSVDEGYEAAIEAalGGRLQavvvenlnaakKAIAFLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 841 QFNML----SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMkmSG----DNSSQLTKMNDELRLKERDV 912
Cdd:TIGR02168 571 GRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL--GGvlvvDDLDNALELAKKLRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 913 -----------------EELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKlSDLEKKMETSHNQ 975
Cdd:TIGR02168 649 tldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-EQLRKELEELSRQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 976 CQELKARYERATSETKtKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRkqADKAKAAQTAEDAMQIMEQMTKE 1055
Cdd:TIGR02168 728 ISALRKDLARLEAEVE-QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE--AEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1056 KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVK 1135
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1136 LAEELgrsrdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLrG 1215
Cdd:TIGR02168 885 LEEAL----------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-L 953
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 1216 ENASAKslhsvVQTLESDKVKLELKVKNLELQLKEnkrqlsssSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDL 1294
Cdd:TIGR02168 954 EEAEAL-----ENKIEDDEEEARRRLKRLENKIKE--------LGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-1116 |
8.07e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.19 E-value: 8.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 417 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQ-EVAELRRRLESNKPAgd 495
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERS-- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 496 VDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENsdviA 575
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----A 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 576 LWK---SKLETAIASHQQAMEELKVSFSKGLGTE---TAEFAELKTQIEKmrldyqheIENLQNQQDSERAAHAKEMEAL 649
Cdd:TIGR02169 382 ETRdelKDYREKLEKLKREINELKRELDRLQEELqrlSEELADLNAAIAG--------IEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 650 RAKLMKVIKEK---ENSLEAIRSKLDKAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDN-------FTSQ 719
Cdd:TIGR02169 454 EWKLEQLAADLskyEQELYDLKEEYDRVEK----ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 720 LKATEEK----------------LLDLDALRKASSEGKSEMK----------KLR------------------------- 748
Cdd:TIGR02169 530 LGSVGERyataievaagnrlnnvVVEDDAVAKEAIELLKRRKagratflplnKMRderrdlsilsedgvigfavdlvefd 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 QQLEAAEKQI-KHLEIEKNAESS------------------KASSIT---RELQGRELKLTNLQENLSEVSQVKETLEKE 806
Cdd:TIGR02169 610 PKYEPAFKYVfGDTLVVEDIEAArrlmgkyrmvtlegelfeKSGAMTggsRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 807 LQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAE 886
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 887 IMKMSGDNSSQLTKMNDELRlkERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKkheeekkelerklsdLE 966
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY---------------LE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 967 KKMETSHNQCQELKAR---YERATSETKTKHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAaq 1040
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQiksIEKEIENLNGKKEELeeeLEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA-- 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1041 TAEDAMQIMEQMT--------------------KEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE---------- 1090
Cdd:TIGR02169 911 QIEKKRKRLSELKaklealeeelseiedpkgedEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeevlkrlde 990
|
810 820
....*....|....*....|....*.
gi 38044112 1091 LNKSKELLTVENQKMEEFRKEIETLK 1116
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
608-1256 |
8.34e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.19 E-value: 8.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 608 AEFAELKTQIEKMRLDYQHEIENLQNQQDsERAaHAKEMEALRAKLMKV-IKEKENSLEAIRSKLDKAEDQhLVEMEDTL 686
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR-ERE-KAERYQALLKEKREYeGYELLKEKEALERQKEAIERQ-LASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 687 NKLQ-EAEIKVKELEVLQAKCNEQTKVIDNFTS-QLKATEEKLLDLDALRkASSEGKSEMKKlrQQLEAAEKQIKHLEIE 764
Cdd:TIGR02169 254 EKLTeEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI-ASLERSIAEKE--RELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 765 KNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLH-------Q 837
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINelkreldR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 838 KEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQL 917
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 918 KLTKANENASFLQKS------------------------------------------------IEDMTVKAEQSQQEAAK 949
Cdd:TIGR02169 491 ELAEAEAQARASEERvrggraveevlkasiqgvhgtvaqlgsvgeryataievaagnrlnnvvVEDDAVAKEAIELLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 950 KHEEEKKELERKLSDLEKKMETSHNQCQ--------ELKARYERATS---------ETKTKHEEILQNLQKTLLDTEDKL 1012
Cdd:TIGR02169 571 KAGRATFLPLNKMRDERRDLSILSEDGVigfavdlvEFDPKYEPAFKyvfgdtlvvEDIEAARRLMGKYRMVTLEGELFE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1013 K------GAREENSGLL---QELEELRKQADKAKAAQTAEDAMQI-MEQMTKEKTETLASLEDTKQTNAKLQNELDTLKE 1082
Cdd:TIGR02169 651 KsgamtgGSRAPRGGILfsrSEPAELQRLRERLEGLKRELSSLQSeLRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1083 NNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSR-DEVTSH-QKLEEERSVL 1160
Cdd:TIGR02169 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVSRI 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1161 NNQLLEMKKRESK-----------------FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGEnasAKSL 1223
Cdd:TIGR02169 811 EARLREIEQKLNRltlekeylekeiqelqeQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR---LGDL 887
|
730 740 750
....*....|....*....|....*....|...
gi 38044112 1224 HSVVQTLESDKVKLELKVKNLELQLKENKRQLS 1256
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
681-1258 |
9.35e-16 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 82.76 E-value: 9.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 681 EMEDTLNKLQ-EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDL-----------DALRKASSEGKSEMKKLR 748
Cdd:TIGR04523 37 QLEKKLKTIKnELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLndklkknkdkiNKLNSDLSKINSEIKNDK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 QQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEaseeavsvqrsM 828
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN-----------I 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 829 QETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLK 908
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 909 ERDVEELQLKLTKANENASFLQKSIEDMTVKAE----QSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYE 984
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 985 RATSETKTKHEEIlQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADK-----AKAAQTAEDAMQIMEQMTKEKTET 1059
Cdd:TIGR04523 346 QLKKELTNSESEN-SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDleskiQNQEKLNQQKDEQIKKLQQEKELL 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1060 LASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAA-------AQKSQQLSALQEE 1132
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLeqkqkelKSKEKELKKLNEE 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1133 NVKLAEELGRSRDEVTS----HQKLEEERSVLNNQLlemKKRESKFIKDADE-EKASLQKSISitsalltEKDAELEKLR 1207
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSlkekIEKLESEKKEKESKI---SDLEDELNKDDFElKKENLEKEID-------EKNKEIEELK 574
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 38044112 1208 NEVTVLRGENASAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1258
Cdd:TIGR04523 575 QTQKSLKKKQEEKQEL---IDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-936 |
2.00e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 432 EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAgdVDMSLSLLQEISSLQE 511
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--LEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 512 KLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQA 591
Cdd:COG1196 369 EAEAELAEAEEELEELAE----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 592 MEELKvsfskglgtETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEmEALRAKLMKVIKEKENSLEAIRSKL 671
Cdd:COG1196 445 EEAAE---------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 672 DKAEDQHL---VEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLR 748
Cdd:COG1196 515 LLAGLRGLagaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 QQLEAAEKQIKHLEIEKNAESSKASSITRE-------LQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEA 821
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 822 VSVQRSMQETVNKLHQKEEQfnmLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKM 901
Cdd:COG1196 675 LEAEAELEELAERLAEEELE---LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590
....*....|....*....|....*....|....*
gi 38044112 902 NDELRLKERDVEELQLKLTKanenasfLQKSIEDM 936
Cdd:COG1196 752 ALEELPEPPDLEELERELER-------LEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
657-1301 |
5.04e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 5.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 657 IKEKENSLEAIRSKLDKAEDqHLVEMEDTLNKLQE------------AEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE 724
Cdd:COG1196 174 KEEAERKLEATEENLERLED-ILGELERQLEPLERqaekaeryrelkEELKELEAELLLLKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 725 EKLldlDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLE 804
Cdd:COG1196 253 AEL---EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 805 KELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQfnmlssdLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDI 884
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEA-------LLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 885 AEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEnasflqksiedmtvkAEQSQQEAAKKHEEEKKELERKLSD 964
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE---------------ALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 965 LEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKtllDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAED 1044
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF---LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1045 AMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELnkskelltVENQKMEEFRKEIETLKQAAAQKSQ 1124
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA--------LARGAIGAAVDLVASDLREADARYY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1125 QLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELE 1204
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1205 KLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDflnsvi 1284
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE------ 770
|
650
....*....|....*..
gi 38044112 1285 vdlqrknqDLKMKVEMM 1301
Cdd:COG1196 771 --------RLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
407-1186 |
2.05e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.62 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 407 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEesitkgdlevatvsekSRIMELEKDLALRvQEVAELRRR 486
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNE----------------SNELHEKQKFYLR-QSVIDLQTK 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 487 LESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREIT-SLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH 565
Cdd:pfam15921 119 LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAkCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 566 AN----KENSDVIALWKSKLETAIASHQQAMEElKVSFSKGlgtetaEFAELKTQIEKMRLDYQHEIENLQNQQDSERAA 641
Cdd:pfam15921 199 ASgkkiYEHDSMSTMHFRSLGSAISKILRELDT-EISYLKG------RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQ 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 642 HAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKEL--EVLQAKCNEQTKvIDNFTSQ 719
Cdd:pfam15921 272 LISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLrsELREAKRMYEDK-IEELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 720 LKATEEKLLDL----DALRKASSEGKSEMKKLRQQLEAAEKQIKhLEIEKNA---ESSKASSIT-----RELQGRELKLT 787
Cdd:pfam15921 351 LVLANSELTEArterDQFSQESGNLDDQLQKLLADLHKREKELS-LEKEQNKrlwDRDTGNSITidhlrRELDDRNMEVQ 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 788 NLQENLSEV-SQVKETLEKELQILKEKfAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREK 866
Cdd:pfam15921 430 RLEALLKAMkSECQGQMERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 867 DEREE----QLIKAKEKLENDIAEImkmsgdnsSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ 942
Cdd:pfam15921 509 ERAIEatnaEITKLRSRVDLKLQEL--------QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 943 SQQEAAKKHEEEkkelerklSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQ-NLQKTLL-----DTEDKLKGAR 1016
Cdd:pfam15921 581 HGRTAGAMQVEK--------AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDlELEKVKLvnagsERLRAVKDIK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1017 EENSGLLQELEELRKQADkakaaqTAEDAMQIMEQMTKEKTETLASLEDTKQTNAK-LQNELDTLKeNNLKNVEELNKS- 1094
Cdd:pfam15921 653 QERDQLLNEVKTSRNELN------SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKsAQSELEQTR-NTLKSMEGSDGHa 725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1095 -------KELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSrdeVTSHQKLEEERSVLNNQLLEM 1167
Cdd:pfam15921 726 mkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV---ATEKNKMAGELEVLRSQERRL 802
|
810
....*....|....*....
gi 38044112 1168 KKRESKFikDADEEKASLQ 1186
Cdd:pfam15921 803 KEKVANM--EVALDKASLQ 819
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-942 |
1.39e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.93 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 357 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 425
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 426 ELLNQLEEekrkvedlQFRVEEESITKGDLEVATVSEKSRIM--ELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLl 503
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 504 qEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENeSLKSKLEHANKENSDVIALWKSKLET 583
Cdd:pfam15921 413 -TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 584 aIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQhEIENLQNQQDSERAAHAkEMEALRAKLmkviKEKENS 663
Cdd:pfam15921 491 -LESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ-ELQHLKNEGDHLRNVQT-ECEALKLQM----AEKDKV 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 664 LEAIRSKLDKAED---QH-------LVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDldal 733
Cdd:pfam15921 564 IEILRQQIENMTQlvgQHgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN---- 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 734 rkASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLS-EVSQVKETLEKELQILKE 812
Cdd:pfam15921 640 --AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTRNTLKS 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 813 kFAEASEEAVSVQRSMQETVNKlhqKEEQFNMLSSDLEKLRENLADMEakfREKDEREEQLIKAKEKLENDIAEIMKMSG 892
Cdd:pfam15921 718 -MEGSDGHAMKVAMGMQKQITA---KRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 38044112 893 DnssqltkmNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ 942
Cdd:pfam15921 791 E--------LEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
638-1245 |
1.42e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 75.85 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 638 ERAAHAkemealRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEmedtlnKLQEAEIKVKELEVLQAKCNEQ----TKVI 713
Cdd:PRK02224 169 ERASDA------RLGVERVLSDQRGSLDQLKAQIEEKEEKDLHE------RLNGLESELAELDEEIERYEEQreqaRETR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 714 DNFTSQLKATEEKLLDLDALRKASSE--------------GKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITREL 779
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDlretiaeterereeLAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 780 QGRELKLTNLQENLSEVSQVKETLEKELQILKEKFA-------EASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 852
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADdleeraeELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 853 RENLADMEAKFREKDEREEQLIKAKEKLENDIAEimkmsgdnssqltkMNDELRLKERDVEELQLKLTKANenasflqks 932
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAE--------------LEATLRTARERVEEAEALLEAGK--------- 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 933 iedmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTkhEEILQNLQKTLLDTEDKL 1012
Cdd:PRK02224 454 ------CPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--EDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1013 KGAREENSGLLQELEELRKQADKAKA-AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlknveel 1091
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAELEAeAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRT--------- 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1092 nkSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshqkLEEERSVLNNQLLEMKKRE 1171
Cdd:PRK02224 597 --LLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR--------IEEAREDKERAEEYLEQVE 666
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38044112 1172 SKfIKDADEEKASLQKSI-SITSALltekdAELEKLRNEVTVLRGENASAKSLHSVVQTLES--DKVKLELKVKNLE 1245
Cdd:PRK02224 667 EK-LDELREERDDLQAEIgAVENEL-----EELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
422-882 |
1.55e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.87 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 422 REKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEK---DLALRVQEVAELRRRLESNKPAGDVDM 498
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEErieELKKEIEELEEKVKELKELKEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 499 SLS-LLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQ---------KEIKALYTATEKLSKENESLKSKLEHANK 568
Cdd:PRK03918 297 KLSeFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEErleelkkklKELEKRLEELEERHELYEEAKAKKEELER 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 569 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKgLGTETAEF----AELKTQIEKM-----------RLDYQHEIENLQN 633
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISK-ITARIGELkkeiKELKKAIEELkkakgkcpvcgRELTEEHRKELLE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 634 QQDSERAAHAKEMEALRAKLMKVIKEKENsLEAIRSKLDKAEDQH-----LVEMEDTLNK--LQEAEIKVKELEVLQAKC 706
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKelaeqLKELEEKLKKynLEELEKKAEEYEKLKEKL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 707 NEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQL--------EAAEKQIKHLE------IEKNAESSKA 772
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELeelgfesvEELEERLKELEpfyneyLELKDAEKEL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 773 SSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILK-----EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSS 847
Cdd:PRK03918 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
490 500 510
....*....|....*....|....*....|....*
gi 38044112 848 DLEKLRENLADMEakfrEKDEREEQLIKAKEKLEN 882
Cdd:PRK03918 695 TLEKLKEELEERE----KAKKELEKLEKALERVEE 725
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
212-866 |
3.62e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 74.34 E-value: 3.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 212 LKIGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFapvhkvtkigFPSTTPAKA 291
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF----------IRPDDDSLL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 292 KANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAER 371
Cdd:COG5244 73 NGNAAYEKIKGGLVCESKGMDKDGEIKQENHEDRIHFEESKIRRLEETIEALKSTEKEEIVELRRENEELDKINLSLRER 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 372 DleraevakatshvgeIEQELALARDGHDQHVLELEAKMDQLRTMVeaadREKVELLNQLEEEKRKVEDLQFRVEEESIT 451
Cdd:COG5244 153 I---------------SSEEPELNKDGSKLSYDELKEFVEESRVQV----YDMVELVSDISETLNRNGSIQRSSVRECER 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 452 KGDLEVATVSE---KSRIMELEKDLALRVQEVAELRRRLESNKPAGD-----VDMSLSLLQEISSLQEKLEVTRTdhQRE 523
Cdd:COG5244 214 SNIHDVLFLVNgilDGVIDELNGELERLRRQLVSLMSSHGIEVEENSrlkatLEKFQSLELKVNTLQEELYQNKL--LKK 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 524 ITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLetaiaSHQQAMEELKVSFSKGL 603
Cdd:COG5244 292 FYQIYEPFAQAALSSQLQYLAEVIESENFGKLENIEIHIILKVLSSISYALHIYTIKN-----TPDHLETTLQCFVNIAP 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 604 GTETAEFAELKTQIEKMRLDYQhEIENLQNQQDSERAAHAKE--MEALRAKLMKVIKEKEN-----SLEAIRSKLDKAED 676
Cdd:COG5244 367 ISMWLSEFLQRKFSSKQETAFS-ICQFLEDNKDVTLILKILHpiLETTVPKLLAFLRTNSNfndndTLCLIGSLYEIARI 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 677 QHLVEMEDTLNKLQE----AEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLE 752
Cdd:COG5244 446 DKLIGKEEISKQDNRlflyPSCDITLSSILTILFSDKLEVFFQGIESLLENITIFPEQPSQQTSDSENIKENSLLSDRLN 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 753 AAEKQIKHLEIEKNAESSKASSItRELQGRELKLTNLQENLSevsqvkeTLEKELQILKEKFAEASEEAVSVQRSMQETV 832
Cdd:COG5244 526 EENIRLKEVLVQKENMLTEETKI-KIIIGRDLERKTLEENIK-------TLKVELNNKNNKLKEENFNLVNRLKNMELKL 597
|
650 660 670
....*....|....*....|....*....|....*..
gi 38044112 833 NKLHQKEEQFNM---LSSDLEKLRENLADMEAKFREK 866
Cdd:COG5244 598 YQIKDNNTLNKIyldLVSEIMELRETIRRQIKEQKRV 634
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
644-1205 |
1.28e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.75 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 644 KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLvEMEDTLNKLqEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKAT 723
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLL-EKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 724 EEKLL--DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKE 801
Cdd:TIGR04523 212 KNKSLesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 802 TLEKELQILKEKFA-----EASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 876
Cdd:TIGR04523 292 QLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 877 KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQsQQEAAKKHEEEKK 956
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK-NNSEIKDLTNQDS 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 957 ELERKLSDLEKKMETSHNQCQELKARYERATSEtktkheeiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKA 1036
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSINKIKQN--------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1037 KAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------KLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFR 1109
Cdd:TIGR04523 523 KEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1110 KEIETLKQAAAQKSQQLSALQEENVKLAEELgrsRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSI 1189
Cdd:TIGR04523 603 KEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDII 679
|
570
....*....|....*.
gi 38044112 1190 SITSALLTEKDAELEK 1205
Cdd:TIGR04523 680 ELMKDWLKELSLHYKK 695
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
848-1257 |
1.97e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 1.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 848 DLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENAS 927
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 928 FL-QKSIEDMTVKAE-QSQQEAAKKHEEEKKELERKLSDLEKKMETShNQCQELKARYERaTSETKTKHEEILQNLQKTL 1005
Cdd:PRK03918 239 EIeELEKELESLEGSkRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIK-LSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1006 LDTEDKLKGAREENSGL------LQELEELRKQADKAKA-----AQTAEDAMQIMEQMTKEKTETlasledTKQTNAKLQ 1074
Cdd:PRK03918 317 SRLEEEINGIEERIKELeekeerLEELKKKLKELEKRLEeleerHELYEEAKAKKEELERLKKRL------TGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1075 NELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRSRDEVts 1149
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKEL-- 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1150 hQKLEEERSVLNNQLLEMKK---RESKFIKD---ADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSL 1223
Cdd:PRK03918 469 -KEIEEKERKLRKELRELEKvlkKESELIKLkelAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430
....*....|....*....|....*....|....
gi 38044112 1224 HSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1257
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
369-921 |
2.46e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 369 AERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEE 448
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 449 SitKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDvdmslsllqeissLQEKLEVTRTdhqreitslK 528
Cdd:PTZ00121 1404 K--KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE-------------AKKKAEEAKK---------A 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 529 EHFGAREETHQKEIKALYTATEKlsKENESLKSKLEHANKENSDviaLWKSKLETAIASHQQAMEELKVSFSKGLGTETA 608
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEA--KKADEAKKKAEEAKKKADE---AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 609 EFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNK 688
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 689 LQEAEIKVKELEvlqaKCNEQTKVIDNFTsqlKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAE 768
Cdd:PTZ00121 1615 AEEAKIKAEELK----KAEEEKKKVEQLK---KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 769 SSKASSITRELQGRElKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSD 848
Cdd:PTZ00121 1688 KKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 38044112 849 LEKLRENLADMEAKFrekderEEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTK 921
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVI------EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
652-1245 |
2.65e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.63 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 652 KLMKVIKEKENSLEAIRSKLDKAEDQHlvemedtlNKLQEAEikvKELEvlqakcnEQTKVIDNFTSQLKATEEKLldld 731
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKE---KELE-------EVLREINEISSELPELREEL---- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 732 alRKASSEgKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK--ELQI 809
Cdd:PRK03918 224 --EKLEKE-VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 810 LKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENdIAEIMK 889
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 890 MSGDNSsqLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ-----------SQQEAAKKHEEEKKEL 958
Cdd:PRK03918 380 RLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 959 ERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEI-LQNLQKTLLDTEDKLKG-AREENSGLLQELEELRKQADKA 1036
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIkLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1037 KAAQ-TAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNEldtLKENNLKNVEELNKskelltvENQKMEEFRKEIETL 1115
Cdd:PRK03918 538 KGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEE-------RLKELEPFYNEYLEL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1116 KQAaaqkSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKresKFIKDADEEKASLQKSISITSAL 1195
Cdd:PRK03918 608 KDA----EKELEREEKELKKLEEELDKAFEEL---AETEKRLEELRKELEELEK---KYSEEEYEELREEYLELSRELAG 677
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 38044112 1196 LTEKDAELEKLRNEVTvlrgenASAKSLHSVVQTLESDKVKLELKVKNLE 1245
Cdd:PRK03918 678 LRAELEELEKRREEIK------KTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
336-887 |
2.95e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRT 415
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE-----------ELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 416 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNkpAGD 495
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--EEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 496 VDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEhANKENSDVIA 575
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGFLE 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 576 LWKSKLETAIAS--HQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQ---------DSERAAHAK 644
Cdd:COG1196 509 GVKAALLLAGLRglAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAAL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 645 EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE 724
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 725 EKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQikhlEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLE 804
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLA----EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 805 KELQILKEKFAEASEEAVSVQrsmQETVNKLHQKEEQF---NMLSsdLEKLREnladMEAKFREKDEREEQLIKAKEKLE 881
Cdd:COG1196 745 EELLEEEALEELPEPPDLEEL---ERELERLEREIEALgpvNLLA--IEEYEE----LEERYDFLSEQREDLEEARETLE 815
|
....*.
gi 38044112 882 NDIAEI 887
Cdd:COG1196 816 EAIEEI 821
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
536-1255 |
5.36e-12 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 70.52 E-value: 5.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 536 ETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSF 599
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 600 SKGLGTETAEFAELKTQIEKMRLDYQHEIenlqnQQDSERAAHAKEmealraKLMKVIKEKENSLEAIRSKLDKAEDQhl 679
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 680 veMEDTLNKLQEAEIKVKELEvlqakcnEQTKVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEMKKLRQQLEAAEKQI 758
Cdd:pfam05483 256 --MKDLTFLLEESRDKANQLE-------EKTKLQDENLKELIEKKDHLTkELEDIKMSLQRSMSTQKALEEDLQIATKTI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 759 KHLEIEKNA--ESSKASSITRELQGRELKLT--NLQENLSEVSQVKETLEKELQILKEKFAEASEEAvsvqrsmqETVNK 834
Cdd:pfam05483 327 CQLTEEKEAqmEELNKAKAAHSFVVTEFEATtcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL--------EEMTK 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 835 LHQKEEqfnmlsSDLEKLRENLADMEAKFREKdereEQLIKAKEKLENDIAEIMKMsgdnssqltkmndeLRLKERDVEE 914
Cdd:pfam05483 399 FKNNKE------VELEELKKILAEDEKLLDEK----KQFEKIAEELKGKEQELIFL--------------LQAREKEIHD 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 915 LQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKlsdlEKKMETSHNQCQELKARYERATSETKTKH 994
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLEN----KELTQEASDMTLELKKHQEDIINCKKQEE 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 995 EEI--LQNLQKTLLDTEDKLKGAREEnsgLLQELEELRKQADKAKaaqtaEDAMQIMEQMTKEKTetlasledtkqtnak 1072
Cdd:pfam05483 531 RMLkqIENLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSE-----ENARSIEYEVLKKEK--------------- 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1073 lQNELDTLKENNLKNVEElNKSKELltvenqkmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQK 1152
Cdd:pfam05483 588 -QMKILENKCNNLKKQIE-NKNKNI--------EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------QK 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1153 LEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSAL-------LTEKDAELEKLRNEVTVLRGENASAKSLH- 1224
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdkrcqhkIAEMVALMEKHKHQYDKIIEERDSELGLYk 731
|
730 740 750
....*....|....*....|....*....|.
gi 38044112 1225 SVVQTLESDKVKLELKVKNLELQLKENKRQL 1255
Cdd:pfam05483 732 NKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
358-1305 |
6.72e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 70.59 E-value: 6.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 358 KEKQQHIEQLLAERDLERAEVAKATSHVGE---IEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEE 434
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQEqlqAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 435 KRK----VEDLQFRVEEESITKGDLEVATVSEKSRIMELEKD-LALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISSL 509
Cdd:pfam01576 98 KKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDiLLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 510 QEKLevtRTDHQREITSLkehfgarEETHQKEikalytatEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQ 589
Cdd:pfam01576 178 LSKL---KNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 590 QAMEELKVSFSKgLGTETAEfaelKTQIEKMRLDYQHEIENLQNQQDSERAAhakemealRAKLMKVIKEKENSLEAIRS 669
Cdd:pfam01576 240 KKEEELQAALAR-LEEETAQ----KNNALKKIRELEAQISELQEDLESERAA--------RNKAEKQRRDLGEELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 670 KLDKAEDQHLVEME---------DTLNKLQEAEIKVKELEVLQAKcNEQTKVIDNFTSQLKATEEKLLDLD----ALRKA 736
Cdd:pfam01576 307 ELEDTLDTTAAQQElrskreqevTELKKALEEETRSHEAQLQEMR-QKHTQALEELTEQLEQAKRNKANLEkakqALESE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 737 SSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKelqilkeKFAE 816
Cdd:pfam01576 386 NAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEG-------KNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 817 ASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSS 896
Cdd:pfam01576 459 LSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAG 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 897 QLTKMNDELRLKERDVEELQLKLT-------KANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKM 969
Cdd:pfam01576 539 TLEALEEGKKRLQRELEALTQQLEekaaaydKLEKTKNRLQQELDDLLVDLDHQRQ---------------LVSNLEKKQ 603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 970 ETSHNQCQELK---ARY----ERATSETKTKHEEILqNLQKTLLDTEDKLKGAREENSGLLQELEEL-RKQADKAKAAQT 1041
Cdd:pfam01576 604 KKFDQMLAEEKaisARYaeerDRAEAEAREKETRAL-SLARALEEALEAKEELERTNKQLRAEMEDLvSSKDDVGKNVHE 682
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1042 AEDAMQIMEQMTKEKTETLASLEDTKQT--NAKLQNE-----LDTLKENNLKNVEELNKSKELLTVenQKMEEFRKEIET 1114
Cdd:pfam01576 683 LERSKRALEQQVEEMKTQLEELEDELQAteDAKLRLEvnmqaLKAQFERDLQARDEQGEEKRRQLV--KQVRELEAELED 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1115 LK----QAAAQKSQQLSALQEENVKLaEELGRSRDE-VTSHQKLEEERSVLNNQLLEMK-KRESKFIKDADEEKASlqKS 1188
Cdd:pfam01576 761 ERkqraQAVAAKKKLELDLKELEAQI-DAANKGREEaVKQLKKLQAQMKDLQRELEEARaSRDEILAQSKESEKKL--KN 837
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1189 ISITSALLTEKDAELEKLRNEVTVLRGE-------NASAKSLhsvvqtLESDKVKLELKVKNLELQLKENKrqlssssGN 1261
Cdd:pfam01576 838 LEAELLQLQEDLAASERARRQAQQERDEladeiasGASGKSA------LQDEKRRLEARIAQLEEELEEEQ-------SN 904
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 1262 TDTQADEDERAQeSQIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1305
Cdd:pfam01576 905 TELLNDRLRKST-LQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-1238 |
8.59e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 8.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 417 VEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdlevatVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdv 496
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDE------------KRQQLERLRREREKAERYQALLKEKREYE-------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 497 dmslslLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIAL 576
Cdd:TIGR02169 225 ------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 577 WKS---KLETAIASHQQAMEELKvsfskglgtetAEFAELKTQIEKmrldYQHEIENLQNQQDSERaahakemeALRAKL 653
Cdd:TIGR02169 299 LEAeiaSLERSIAEKERELEDAE-----------ERLAKLEAEIDK----LLAEIEELEREIEEER--------KRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 654 MKVIKEKENSLEAIRSKLdKAEDQHLVEMEDTLNKLQEaeikvkELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDA- 732
Cdd:TIGR02169 356 TEEYAELKEELEDLRAEL-EEVDKEFAETRDELKDYRE------KLEKLKREINELKRELDRLQEELQRLSEELADLNAa 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 733 ---LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK---- 805
Cdd:TIGR02169 429 iagIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEErvrg 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 806 --------------------ELQILKEKFAEASEEA---------VSVQRSMQETVNKLHQKE---------EQFNMLSS 847
Cdd:TIGR02169 509 graveevlkasiqgvhgtvaQLGSVGERYATAIEVAagnrlnnvvVEDDAVAKEAIELLKRRKagratflplNKMRDERR 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 848 DLEKLRE--------NLADMEAKFR--------------EKDEREEQLIKAKE-KLENDIAEIM-KMSGDNSSQLTKMND 903
Cdd:TIGR02169 589 DLSILSEdgvigfavDLVEFDPKYEpafkyvfgdtlvveDIEAARRLMGKYRMvTLEGELFEKSgAMTGGSRAPRGGILF 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 904 ELRLKERdVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKMETSHNQCQELKARY 983
Cdd:TIGR02169 669 SRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDELSQ---------------ELSDASRKIGEIEKEIEQLEQEE 732
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 984 ERAtsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMtKEKTETLASL 1063
Cdd:TIGR02169 733 EKL--------KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI-PEIQAELSKL 803
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1064 EDTKQTNAKLQNELDtlkennlKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEE-NVKLAEELGR 1142
Cdd:TIGR02169 804 EEEVSRIEARLREIE-------QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEElEEELEELEAA 876
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1143 SRDEVTSHQKLEEERSVLNNQLLEMKKRESKfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1222
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEE-LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955
|
890
....*....|....*.
gi 38044112 1223 LHSVVQTLESDKVKLE 1238
Cdd:TIGR02169 956 VQAELQRVEEEIRALE 971
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
1.04e-11 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 69.71 E-value: 1.04e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
532-1115 |
1.40e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 532 GAREETHQKEIKALYTATEKLSKENESLKSKLEHANkENSDVIALWKSKLETAIASHQQAMEELkvsfskglgtetaefA 611
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREEL---------------E 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 612 ELKTQIEKMRLDYQheienlqnQQDSERAAHAKEMEALRAKLMKVIKEKENSLEaiRSKLDKAEDQHLVEMEDTLNklqe 691
Cdd:PRK02224 255 TLEAEIEDLRETIA--------ETEREREELAEEVRDLRERLEELEEERDDLLA--EAGLDDADAEAVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 692 aeikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDA----LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 767
Cdd:PRK02224 321 -----DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeeLREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 768 ESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASE--EAVSVQRSMQET-----VNKLHQKEE 840
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAllEAGKCPECGQPVegsphVETIEEDRE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 841 QFNMLSSDLEKLRENLADMEAKFrekdEREEQLIKAKEKLENdiaeimkmSGDNSSQLTKMNDElrlKERDVEELQLKLT 920
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIER--------LEERREDLEELIAE---RRETIEEKRERAE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 921 KANENASFLQKSIEDMTVKAeQSQQEAAKKHEEEKKELERKLSDLEKKMEtSHNQCQELKARYERATSETKTKHEEiLQN 1000
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAA-AEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREK-REA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1001 LQKTLLDTEDKLKGAREENSGLLQELEELR---KQADKAKAAQTAEDAMQIMEQMTKEKTEtlasledtkqtnakLQNEL 1077
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEFDEARieeAREDKERAEEYLEQVEEKLDELREERDD--------------LQAEI 683
|
570 580 590
....*....|....*....|....*....|....*...
gi 38044112 1078 DTLkENNLKNVEELNKSKELLTVENQKMEEFRKEIETL 1115
Cdd:PRK02224 684 GAV-ENELEELEELRERREALENRVEALEALYDEAEEL 720
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
352-945 |
1.72e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.91 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 432 EEEKRKVEDLQFRVEE--ESITKGDLEVATVSEksRIMELEKDLalrvqevAELRRRLESNKPAgdvdmslslLQEISSL 509
Cdd:PRK02224 282 RDLRERLEELEEERDDllAEAGLDDADAEAVEA--RREELEDRD-------EELRDRLEECRVA---------AQAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 510 QEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEhANKENSDVIALWKSKLETAIASHQ 589
Cdd:PRK02224 344 AESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREEIEELEEEIE-ELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 590 QAMEELKVSfskgLGTETAEFAELKTQIEKMR--LDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAI 667
Cdd:PRK02224 419 EERDELRER----EAELEATLRTARERVEEAEalLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 668 RSKLDKAEDqhLVEMEDTLNKLQEAEIKVKELevlqakcneqtkvidnFTSQLKATEEKLLDLDALRKASSEGKSEMkkl 747
Cdd:PRK02224 495 EERLERAED--LVEAEDRIERLEERREDLEEL----------------IAERRETIEEKRERAEELRERAAELEAEA--- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 748 RQQLEAAEKQikHLEIEKNAESSKASSITR-ELQGRELKLTNLQENLSEVSQVKETLEkELQILKEKFAEASEEAVSVQR 826
Cdd:PRK02224 554 EEKREAAAEA--EEEAEEAREEVAELNSKLaELKERIESLERIRTLLAAIADAEDEIE-RLREKREALAELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 827 SMQETVNKLHQK--EEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDE 904
Cdd:PRK02224 631 EKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL---------------EE 695
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 38044112 905 LRLKERDVEELQLKLTKANENASFLQKSIedMTVKAEQSQQ 945
Cdd:PRK02224 696 LRERREALENRVEALEALYDEAEELESMY--GDLRAELRQR 734
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-1097 |
8.28e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 8.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 344 ARKISGTTALQEALKE-----KQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlaRDGHDQHVLELEAKMDQLRtmvE 418
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDaeeakKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA--RKADELKKAEEKKKADEAK---K 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 419 AADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvseksrimelekdlalrvQEVAELRRRLESNKPAGDVdm 498
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAK----------------------------KKADAAKKKAEEAKKAAEA-- 1347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 499 slsllQEISSLQEKLEVTRTDHQREITSLKehfgaREETHQKEIKALYTATEKlsKENESLKSKLEHANKENSDVIALWK 578
Cdd:PTZ00121 1348 -----AKAEAEAAADEAEAAEEKAEAAEKK-----KEEAKKKADAAKKKAEEK--KKADEAKKKAEEDKKKADELKKAAA 1415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 579 SKlETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRldyqhEIENLQNQQDSERAAHAKEMEALRAKLMKVIK 658
Cdd:PTZ00121 1416 AK-KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-----KAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 659 EKEnslEAIRSKLDKAEdqhlvemedtlnKLQEAEIKVKELEvlqaKCNEQTKvidnfTSQLKATEEKlLDLDALRKASS 738
Cdd:PTZ00121 1490 KKA---EEAKKKADEAK------------KAAEAKKKADEAK----KAEEAKK-----ADEAKKAEEA-KKADEAKKAEE 1544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 739 EGKSEMKKLRQQLEAAEkQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQilKEKFAEAS 818
Cdd:PTZ00121 1545 KKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK--KAEEAKIK 1621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 819 EEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENL---ADMEAKFREKDEREEQLIKAKEKLENDIAEimkmsgdns 895
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE--------- 1692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 896 sQLTKMNDElrlkERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELErklsDLEKKMETSHNQ 975
Cdd:PTZ00121 1693 -ALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK----DEEEKKKIAHLK 1763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 976 CQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAReENSGLLQE--------LEELRKQADKAKAAQTAEDAMQ 1047
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF-DNFANIIEggkegnlvINDSKEMEDSAIKEVADSKNMQ 1842
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 38044112 1048 IMEQMTKEKTETLASLEDTKQTNAKLQNELDT-LKENNLKNVEELNKSKEL 1097
Cdd:PTZ00121 1843 LEEADAFEKHKFNKNNENGEDGNKEADFNKEKdLKEDDEEEIEEADEIEKI 1893
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
463-1056 |
1.30e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.24 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 463 KSRIMELEKDLALRVQEVAELRRRLEsnKPAGDVDMSLSLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREEthqkEI 542
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELP--ELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEE----KI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 543 KALYTATEKLSKENESLKSKLEHANKensdvialwkskletaiashqqaMEELKVSFSKgLGTETAEFAELKTQIEKMRL 622
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELKE-----------------------LKEKAEEYIK-LSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 623 DYQHEIENLQnqqdseraahakemealraKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQEAEIKVKELEVL 702
Cdd:PRK03918 318 RLEEEINGIE-------------------ERIKELEEKEERLEELKKKLKELEKR-LEELEERHELYEEAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 703 QAKCNEQTKvidnftsqlkatEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKhlEIEKNAESSKASSITRELQGR 782
Cdd:PRK03918 378 KKRLTGLTP------------EKLEKELEELEKAKEEIEEEISKITARIGELKKEIK--ELKKAIEELKKAKGKCPVCGR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 783 ELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ--RSMQETVNKLHQKEEQFNMLSSDLEKLreNLADME 860
Cdd:PRK03918 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKLKKY--NLEELE 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 861 AKFREKDEREEQLIKAK-------------EKLENDIAEIMKMSGDNSSQLTKMNDELR-LKERDVEELQLKLtkaNENA 926
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKgeikslkkeleklEELKKKLAELEKKLDELEEELAELLKELEeLGFESVEELEERL---KELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 927 SFLQKSIEDMTVKAE-QSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARY-----ERATSETKTKHEEI--- 997
Cdd:PRK03918 599 PFYNEYLELKDAEKElEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseeeyEELREEYLELSRELagl 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 998 ------LQNLQKTLLDTEDKLKGAREENSG----------LLQELEELRKQADKAKA-------AQTAEDAMQIMEQMTK 1054
Cdd:PRK03918 679 raeleeLEKRREEIKKTLEKLKEELEEREKakkeleklekALERVEELREKVKKYKAllkeralSKVGEIASEIFEELTE 758
|
..
gi 38044112 1055 EK 1056
Cdd:PRK03918 759 GK 760
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
539-1335 |
1.85e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 66.23 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 539 QKEIKALYTATEKLSKEN---ESLKSKLEHANKENSDVIALWKS--KLETAIASHQQAMEEL-KVS---FSKGLGTETAE 609
Cdd:TIGR01612 578 EKEIKDLFDKYLEIDDEIiyiNKLKLELKEKIKNISDKNEYIKKaiDLKKIIENNNAYIDELaKISpyqVPEHLKNKDKI 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 610 FAELKTQIEKMrldYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKL 689
Cdd:TIGR01612 658 YSTIKSELSKI---YEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNEL 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 690 QEAEIKVKElEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQL--EAAEKQIKHLEIEKNA 767
Cdd:TIGR01612 735 LDIIVEIKK-HIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYndQINIDNIKDEDAKQNY 813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 768 ESSKASSITRELQGREL-KLTNlqenlsevsqvketlekELQILKEKFAEASEEAVSVQRSMQETVNKLHqkeEQFNMLS 846
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIfKIIN-----------------EMKFMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELT 873
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 847 SDL--EKLRENLADMEAKFREKdereeqlikakEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 924
Cdd:TIGR01612 874 NKIkaEISDDKLNDYEKKFNDS-----------KSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNI 942
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 925 NASFLQKSIEdmTVKAEQSQQEaakkheeekkelerklSDLEKKMETSHNQCQEL-KARYERATSETKTKHEEILQ---N 1000
Cdd:TIGR01612 943 LKEILNKNID--TIKESNLIEK----------------SYKDKFDNTLIDKINELdKAFKDASLNDYEAKNNELIKyfnD 1004
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1001 LQKTL-LDTEDKLKGAREENSGLLQELEElrKQADKAKAAQTAEDAM-----QIMEQMTKEKTETLASLE-------DTK 1067
Cdd:TIGR01612 1005 LKANLgKNKENMLYHQFDEKEKATNDIEQ--KIEDANKNIPNIEIAIhtsiyNIIDEIEKEIGKNIELLNkeileeaEIN 1082
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1068 QTN-------AKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAeel 1140
Cdd:TIGR01612 1083 ITNfneikekLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVA--- 1159
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1141 grsrdevtshqkleeERSVLNNQLLEMKKRESKFIKDADEEKASLQksisitsalltekdaELEKLRNEVTvlrgenasa 1220
Cdd:TIGR01612 1160 ---------------DKAISNDDPEEIEKKIENIVTKIDKKKNIYD---------------EIKKLLNEIA--------- 1200
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1221 kslhsvvqTLESDKVKLElKVKNLELQLKENKRQLSSSsgntdtQADEDERAQESQIDFLNSVIVDLQR-KNQDLKMKVE 1299
Cdd:TIGR01612 1201 --------EIEKDKTSLE-EVKGINLSYGKNLGKLFLE------KIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENE 1265
|
810 820 830
....*....|....*....|....*....|....*...
gi 38044112 1300 MMSEAALNGNGDDLNNYDSDDQEKQ--SKKKPRLFCDI 1335
Cdd:TIGR01612 1266 MGIEMDIKAEMETFNISHDDDKDHHiiSKKHDENISDI 1303
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
791-1304 |
2.63e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 65.20 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 791 ENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDERE 870
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 871 EQLIKAKEKLENDI-------------------------AEIMKMSGD---NSSQLTKMNDELRLKERDVEELQLKLTKA 922
Cdd:pfam01576 92 QQLQNEKKKMQQHIqdleeqldeeeaarqklqlekvtteAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 923 NENASFLQK----------SIEDMTVKAEQSQQEAAKKHEEekkelerklsdLEKKMETSHNQCQELKARYERATSETKT 992
Cdd:pfam01576 172 EEKAKSLSKlknkheamisDLEERLKKEEKGRQELEKAKRK-----------LEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 993 KHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQELEEL-RKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQ 1068
Cdd:pfam01576 241 KEEELqaaLARLEEETAQKNNALKKIRELEAQISELQEDLeSERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1069 TNAKLQNELDTLKennlKNVEELNKSKELLTVE-----NQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELgrs 1143
Cdd:pfam01576 321 LRSKREQEVTELK----KALEEETRSHEAQLQEmrqkhTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL--- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1144 RDEVTSHQKLEEERSVLNNQLLEMKKRES---KFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASA 1220
Cdd:pfam01576 394 RTLQQAKQDSEHKRKKLEGQLQELQARLSeseRQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1221 KSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdtQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEM 1300
Cdd:pfam01576 474 QEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE--------EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
....
gi 38044112 1301 MSEA 1304
Cdd:pfam01576 543 LEEG 546
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
636-1303 |
4.55e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 636 DSERAAHAKEMEALRAKLMK---VIKEKENSLEAIRSKLDKAEdqhlvEMEDTLNKLQEAEIKVKELEVLQAKcneqtKV 712
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERldlIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYELLKEKEALE-----RQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 713 IDNFTSQLKATEEKLLDLDALRkasSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAEsskassITRELQGRELKLTNLQEN 792
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 793 LSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQ 872
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 873 LIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeAAKKHE 952
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA-DLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 953 EEKKELERKLSDLEKKMETSHNQCQELKA---------RYERATSETKTK-----HEEILQ------------------N 1000
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAqaraseervRGGRAVEEVLKAsiqgvHGTVAQlgsvgeryataievaagnR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1001 LQKTLLDTEDKLKGA----REENSG---------------------------------------------------LLQE 1025
Cdd:TIGR02169 549 LNNVVVEDDAVAKEAiellKRRKAGratflplnkmrderrdlsilsedgvigfavdlvefdpkyepafkyvfgdtlVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1026 LEELRKQADKAKAAQTAEDAMQIMEQMT----------KEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSK 1095
Cdd:TIGR02169 629 IEAARRLMGKYRMVTLEGELFEKSGAMTggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1096 ELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLLEMKKRE 1171
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEArieeLEEDLHKLEEALNDLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1172 S-KFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASA-----------KSLHSVVQTLESDKVKLEL 1239
Cdd:TIGR02169 789 ShSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELqeqridlkeqiKSIEKEIENLNGKKEELEE 868
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38044112 1240 KVKNLELQLKENKRQLSSSSGNTDtQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSE 1303
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERD-ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-906 |
4.87e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.55 E-value: 4.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 354 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 432
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 433 EEKRKVEDLQFRVEEESitkGDlevatvseksRIMELEKDLALRVQEVAELRRRLESnkpagdvdmslsLLQEISSLQEK 512
Cdd:COG4913 320 ALREELDELEAQIRGNG---GD----------RLEQLEREIERLERELEERERRRAR------------LEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 513 LEVTR---TDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH--ANKEN--SDVIALwKSKLETAI 585
Cdd:COG4913 375 LPASAeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASleRRKSNipARLLAL-RDALAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 586 ASHQQAM----EELKV---------SFSKGLGT-------ETAEFAELKTQIE----KMRLDYQHEIENLQNQQDSERAA 641
Cdd:COG4913 454 GLDEAELpfvgELIEVrpeeerwrgAIERVLGGfaltllvPPEHYAAALRWVNrlhlRGRLVYERVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 642 H--AKEME--------------ALRAKLMKV------------------IKEKENSLE-----AIRS----------KLD 672
Cdd:COG4913 534 DslAGKLDfkphpfrawleaelGRRFDYVCVdspeelrrhpraitragqVKGNGTRHEkddrrRIRSryvlgfdnraKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 673 KAEDQhLVEMEDTLNKLQEAEIKVK-ELEVLQAKCNEQTKVIDNFTSQL--KATEEKLLDLDALRKASSEGKSEMKKLRQ 749
Cdd:COG4913 614 ALEAE-LAELEEELAEAEERLEALEaELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDDLAALEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 750 QLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELqiLKEKFAEASEEAV------S 823
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAAALGDAVerelreN 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 824 VQRSMQETVNKLHQKEEQ-----------FNMLSSD--------------LEKLREN-LADMEAKFRE-KDEREEQLIKA 876
Cdd:COG4913 771 LEERIDALRARLNRAEEEleramrafnreWPAETADldadleslpeylalLDRLEEDgLPEYEERFKElLNENSIEFVAD 850
|
650 660 670
....*....|....*....|....*....|.
gi 38044112 877 -KEKLENDIAEImkmsgdnSSQLTKMNDELR 906
Cdd:COG4913 851 lLSKLRRAIREI-------KERIDPLNDSLK 874
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
771-1299 |
1.69e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 771 KASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKfaeaseeavsvqrsMQETVNKLHQKEEQFNMLSSDLE 850
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQ--------------IKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 851 KLRENLAD----MEAKFREKDEREEQLIKAKEKLENDIAEIMKMSgdnsSQLTKMNDELRLKERDVEELQLKLTKANENA 926
Cdd:TIGR04523 107 KINSEIKNdkeqKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKE----KELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 927 SFLQKSIEDMtvkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKaryeratsETKTKHEEILQNLQKTLL 1006
Cdd:TIGR04523 183 LNIQKNIDKI-----KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLK--------DNIEKKQQEINEKTTEIS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1007 DTEDKLKGAREENSGLLQELEELRKQADKAKaaqtaedamQIMEQMTKEKTETLASLEDTKqtNAKLQNELDTLKENNLK 1086
Cdd:TIGR04523 250 NTQTQLNQLKDEQNKIKKQLSEKQKELEQNN---------KKIKELEKQLNQLKSEISDLN--NQKEQDWNKELKSELKN 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1087 NVEELNKSKELLTVENQKMEEFRKEIETLKQaaaqksqQLSALQEENVKLAEELGRSRDEV-----------TSHQKLEE 1155
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKK-------ELTNSESENSEKQRELEEKQNEIeklkkenqsykQEIKNLES 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1156 ERSVLNNQLLEMKKRESKF---IKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLrgeNASAKSLHSVVQTLES 1232
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKdeqIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLET 468
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38044112 1233 DKVKLELKVKNLELQLKENKRQLSSssgntdtqadederaQESQIDFLNSVIVDLQRKNQDLKMKVE 1299
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKS---------------KEKELKKLNEEKKELEEKVKDLTKKIS 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1011-1312 |
2.13e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1011 KLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 1090
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1091 LNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKR 1170
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1171 ESKFIKDADEEKASLQksisitsALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1250
Cdd:COG1196 374 LAEAEEELEELAEELL-------EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 1251 NKRQLSSSSgNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGDD 1312
Cdd:COG1196 447 AAEEEAELE-EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
356-1252 |
2.17e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 62.37 E-value: 2.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 356 ALKEKQQHIEQLLAERDLERAEVAKATshvgeiEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEK 435
Cdd:TIGR00606 273 ALKSRKKQMEKDNSELELKMEKVFQGT------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 436 RKVEDLQFRVE--EESITKGDLEVATVSEKSRIMELEKD--LALRVQEVAELRRRLESNKpagdvdmSLSLLQEISSLQE 511
Cdd:TIGR00606 347 VEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGpfSERQIKNFHTLVIERQEDE-------AKTAAQLCADLQS 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 512 KLEVTrtdhQREITSLKEHFGAREETHQKEikalytaTEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQA 591
Cdd:TIGR00606 420 KERLK----QEQADEIRDEKKGLGRTIELK-------KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 592 MEElkvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALraklmkvIKEKENSLEAIRSKL 671
Cdd:TIGR00606 489 KAE------KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEML-------TKDKMDKDEQIRKIK 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 672 DKAEDQHLVEMEDTLNKlqeaeikvKELEvlqakcneqtKVIDNFTSQLKATEEKLLDLDalrkassegkSEMKKLRQQL 751
Cdd:TIGR00606 556 SRHSDELTSLLGYFPNK--------KQLE----------DWLHSKSKEINQTRDRLAKLN----------KELASLEQNK 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 752 EAAEKQIKHLEIEKNAESSKASSITRElQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQET 831
Cdd:TIGR00606 608 NHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRV 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 832 VNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERD 911
Cdd:TIGR00606 687 FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 912 VEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETK 991
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 992 tKHEEILQNLQKTLLDTEDKLKgarEENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA 1071
Cdd:TIGR00606 847 -LNRKLIQDQQEQIQHLKSKTN---ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1072 KLQNELDTLKENNLKNVE-ELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQ--------QLSALQEENVKLAEELGR 1142
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQdKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEtelntvnaQLEECEKHQEKINEDMRL 1002
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1143 SRDEVTSHQKLEeerSVLNNQLLEMKKRESkfIKDADEEKASLQKSISitSALLTEKDAELEKLRNEVTVLRGENASAks 1222
Cdd:TIGR00606 1003 MRQDIDTQKIQE---RWLQDNLTLRKRENE--LKEVEEELKQHLKEMG--QMQVLQMKQEHQKLEENIDLIKRNHVLA-- 1073
|
890 900 910
....*....|....*....|....*....|
gi 38044112 1223 lHSVVQTLESDKVKLELKVKNLELQLKENK 1252
Cdd:TIGR00606 1074 -LGRQKGYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
404-1039 |
3.42e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 404 LELEAKMDQLRTMVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAEL 483
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 484 RRRLESnkpagdvdmslsLLQEISSLQEKLEVTRTDHQREITSLKEHfGAREETHQKEIKALYTATEKLSKENESLKSKL 563
Cdd:COG1196 294 LAELAR------------LEQDIARLEERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 564 EHANKENSDVIALWKSKLETAIASHQQAMEELKvsfskglgtETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHA 643
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALR---------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 644 KEMEALRAKLMKVIKEKENSLEairskLDKAEDQHLVEMEDTLNKLQEAEIKVKELEvlqakcneqtkvidnftsQLKAT 723
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAE-----LEEEEEALLELLAELLEEAALLEAALAELL------------------EELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 724 EEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRelkltnLQENLSEVSQVKETL 803
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA------LQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 804 EKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEnd 883
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV-- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 884 iaeimkmsgdnssqltkmndELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLS 963
Cdd:COG1196 641 --------------------TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38044112 964 DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKgAREENSGLLQELEELRKQADKAKAA 1039
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE-EALEELPEPPDLEELERELERLERE 775
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
701-927 |
9.23e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 9.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 701 VLQAKCNEQTKVIDNFTSQLKATEEKlldLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknaesskassitRELQ 780
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQLAALERRIAALA--------------RRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 781 GRELKLTNLQENLSEVSQVKETLEKELQILKEKFAE------------------ASEEAVSVQRSMQETVNKLHQKEEQF 842
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELAEllralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 843 NMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKA 922
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
....*
gi 38044112 923 NENAS 927
Cdd:COG4942 233 EAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
664-1209 |
1.25e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.93 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 664 LEAIRSKLDKAEDQ--HLVEMEDTLNKLQEAEIKVKELEVLQAKcneqtkvIDNFTSQLKateeklldLDALRKASSEGK 741
Cdd:COG4913 237 LERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLRAA-------LRLWFAQRR--------LELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 742 SEMKKLRQQLEAAEKQIKHLEIEK-NAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEE 820
Cdd:COG4913 302 AELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 821 AVSVQRSMQETVNKLHQKEEQfnmlssdlekLRENLADMEAKFREKDEREEQLikakeklENDIAEIMKMSGDNSSQLTK 900
Cdd:COG4913 382 FAALRAEAAALLEALEEELEA----------LEEALAEAEAALRDLRRELREL-------EAEIASLERRKSNIPARLLA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 901 M----NDELRLKERDV----EELQLKltkaNENASFlQKSIE--------DMTVKAEQSQQ----------------EAA 948
Cdd:COG4913 445 LrdalAEALGLDEAELpfvgELIEVR----PEEERW-RGAIErvlggfalTLLVPPEHYAAalrwvnrlhlrgrlvyERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 949 KKHEEEKKELERKLSDLEKKMETSHNQCQE-LKARYERATSETKTKHEEILQNLQKTL---------------------- 1005
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEELRRHPRAItragqvkgngtrhekddrrrir 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1006 ------LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDT 1079
Cdd:COG4913 600 sryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1080 LKENNLKnVEELnkskelltveNQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSV 1159
Cdd:COG4913 680 LDASSDD-LAAL----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARL 745
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 38044112 1160 LNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNE 1209
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
543-1255 |
1.63e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 543 KALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEelkvsfSKGLGTETAEFAELKTQIEKMRL 622
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ------SHAYLTQKREAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 623 DYQHEIENLQNQQdserAAHAKEMEAL--RAKLMKVIKEKENSLEairskLDKAEDQHLVEMEDTLNKLQEAEIKVKELE 700
Cdd:TIGR00618 264 QLRARIEELRAQE----AVLEETQERInrARKAAPLAAHIKAVTQ-----IEQQAQRIHTELQSKMRSRAKLLMKRAAHV 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 701 VLQAKCNEQTKVIDnftsQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRE-- 778
Cdd:TIGR00618 335 KQQSSIEEQRRLLQ----TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREqa 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 779 -LQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLA 857
Cdd:TIGR00618 411 tIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 858 dMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdmt 937
Cdd:TIGR00618 491 -VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ--- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 938 vKAEQSQQEAAKKHEEEKKELERKLSDLEK-KMETSHNQCQELKARYERATSETKTKHEeilQNLQKTLLDTEDKLKGAR 1016
Cdd:TIGR00618 567 -EIQQSFSILTQCDNRSKEDIPNLQNITVRlQDLTEKLSEAEDMLACEQHALLRKLQPE---QDLQDVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1017 EENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQmtkektetlasledtkqtNAKLQNELDTLKENNLKNVEELNKSKE 1096
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLAS------------------RQLALQKMQSEKEQLTYWKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1097 LLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKREskfIK 1176
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE---LS 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1177 DADEEKASLQKSISITSALLTEKDAELEKLRNEvtvlrGENASAKSLHSVVQTLESDKVKLELK------VKNLELQLKE 1250
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS-----DEDILNLQCETLVQEEEQFLSRLEEKsatlgeITHQLLKYEE 856
|
....*
gi 38044112 1251 NKRQL 1255
Cdd:TIGR00618 857 CSKQL 861
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-1249 |
1.75e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 59.42 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 335 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 414
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 415 TMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKdlalrvqevaeLRRRLESnkpag 494
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEK-----------AKRKLEG----- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 495 dvdmslsllqEISSLQEKLevtrTDHQREITSLKEHFGAREETHQkeiKALYTATEKLSKENESLKSKLEHAN-----KE 569
Cdd:pfam01576 216 ----------ESTDLQEQI----AELQAQIAELRAQLAKKEEELQ---AALARLEEETAQKNNALKKIRELEAqiselQE 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 570 NSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTeTAEFAELKTQIEKmrldyqhEIENLQNQQDSERAAHAKEMEAL 649
Cdd:pfam01576 279 DLESERAARNKAEKQRRDLGEELEALKTELEDTLDT-TAAQQELRSKREQ-------EVTELKKALEEETRSHEAQLQEM 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 650 RAKLMKVIKEKENSLEA---IRSKLDKA------EDQHLVEMEDTLNKL-QEAEIKVKELEV----LQAKCNEQTKVIDN 715
Cdd:pfam01576 351 RQKHTQALEELTEQLEQakrNKANLEKAkqalesENAELQAELRTLQQAkQDSEHKRKKLEGqlqeLQARLSESERQRAE 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 716 FTSQLKATEeklLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSE 795
Cdd:pfam01576 431 LAEKLSKLQ---SELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 796 VSQVKETLEKELQILK----------EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFRE 865
Cdd:pfam01576 508 EEEAKRNVERQLSTLQaqlsdmkkklEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLV 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 866 KDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQ 945
Cdd:pfam01576 588 DLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELE----RTNKQLR 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 946 EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSEtktkheeiLQNLQKTLLDTEDKLKGAREENSGLLQE 1025
Cdd:pfam01576 664 AEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDE--------LQATEDAKLRLEVNMQALKAQFERDLQA 735
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1026 LEELRKQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKM 1105
Cdd:pfam01576 736 RDEQGEEKRRQLVKQVRELEAE-LEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREL 814
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1106 EEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRS-RDEVTSHQKLEEERSVLNNQ------LLEMKKRESKFIKDA 1178
Cdd:pfam01576 815 EEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASeRARRQAQQERDELADEIASGasgksaLQDEKRRLEARIAQL 894
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38044112 1179 DEEKASLQKSISITSALLTEKDAELEKLRNEvtvLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLK 1249
Cdd:pfam01576 895 EEELEEEQSNTELLNDRLRKSTLQVEQLTTE---LAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVK 962
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
627-1055 |
2.43e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.63 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 627 EIENLQNQQDSERAAHAKEMEALRAKL------MKVIKEKENSLEAIRSKLDKAEDQ--HLVEMEDTLNKLQEAEIKVKE 698
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELkeaeekEEEYAELQEELEELEEELEELEAEleELREELEKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 699 LEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQL-EAAEKQIKHLEIEKNAESSKASSITR 777
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 778 ELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEE------------QFNML 845
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllalLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 846 SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 925
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 926 ASFLQ---KSIEDMTVKAEQSQQEAakkheeekkelerklsDLEKKMETSHNQCQEL-KARYERATSETKTKHEEILQNL 1001
Cdd:COG4717 374 ALLAEagvEDEEELRAALEQAEEYQ----------------ELKEELEELEEQLEELlGELEELLEALDEEELEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 38044112 1002 QKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKE 1055
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
742-945 |
2.45e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 742 SEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEA 821
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 822 VSVQRSMQETVNKLHQKEEQ----FNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQ 897
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 38044112 898 LTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 945
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
744-1170 |
2.98e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 2.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 744 MKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFaeaseEAVS 823
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-----EKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 824 VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEndiAEIMKMSGDNSSQLTKMND 903
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 904 ELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLE----------------- 966
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLglggsllsliltiagvl 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 967 --------------KKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ 1032
Cdd:COG4717 280 flvlgllallflllAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1033 ADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlkNVEELNKSKELLTVENQKmEEFRKEI 1112
Cdd:COG4717 360 EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEE----QLEELLGELEELLEALDE-EELEEEL 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 1113 ETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEvTSHQKLEEERSVLNNQLLEMKKR 1170
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
410-936 |
7.03e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 57.22 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 410 MDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlEVATVSEKSRIMELEKDLALRVQEVAELRRRLES 489
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLS------IEYNNAMDDYNNLKSALNELSSLEDMKNRYESEI 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 490 NKPAGDVDMSLSLLQEISSLQEKLE--------VTRT-------------DHQREITSLKEHFGAREETHQK--EIKALY 546
Cdd:PRK01156 259 KTAESDLSMELEKNNYYKELEERHMkiindpvyKNRNyindyfkykndieNKKQILSNIDAEINKYHAIIKKlsVLQKDY 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 547 TATEKLSKENESLKSKLEHANKENSDVIALWKS--KLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDY 624
Cdd:PRK01156 339 NDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieSLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 625 QHEIENLQNQQDSERAAHAKEMEALRAKLMKvikEKENSLEAIRSKLDKAEDQHLVEmeDTLNKLQEAEIKVKELEVLQA 704
Cdd:PRK01156 419 QDISSKVSSLNQRIRALRENLDELSRNMEML---NGQSVCPVCGTTLGEEKSNHIIN--HYNEKKSRLEEKIREIEIEVK 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 705 KCNEQTKVIDNFTSQLKATE--------EKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEkNAESSKASSIT 776
Cdd:PRK01156 494 DIDEKIVDLKKRKEYLESEEinksineyNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE-DLDSKRTSWLN 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 777 RELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENL 856
Cdd:PRK01156 573 ALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKI 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 857 ADMEAKFREKDEREEQLIKAKEKLeNDIAEIMKMSgdnSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDM 936
Cdd:PRK01156 653 DNYKKQIAEIDSIIPDLKEITSRI-NDIEDNLKKS---RKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
592-1113 |
7.30e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.04 E-value: 7.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 592 MEELKVSFSKGLGTETAEFAELKTQIEKMrldyqheienlqNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKL 671
Cdd:pfam05483 298 LEDIKMSLQRSMSTQKALEEDLQIATKTI------------CQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 672 dKAEDQHLVEMEDTLNKL-QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQ 750
Cdd:pfam05483 366 -RTEQQRLEKNEDQLKIItMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 751 LEAAEKQIKHLEIEKNAE-------SSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVS 823
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIktseehyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 824 VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKmnd 903
Cdd:pfam05483 525 CKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK--- 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 904 ELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQELKARY 983
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK----------------------LELELASAKQKFEEIIDNY 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 984 ERATSETKTKHEEILQNLQKTLLDTEDKLKgareensglLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASL 1063
Cdd:pfam05483 660 QKEIEDKKISEEKLLEEVEKAKAIADEAVK---------LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLY 730
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 38044112 1064 EDTKQTNAKLQNELDTlKENNLKNveELNKSKELLTVENQKMEEFRKEIE 1113
Cdd:pfam05483 731 KNKEQEQSSAKAALEI-ELSNIKA--ELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1370-1386 |
1.01e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.01e-07
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
549-1112 |
1.05e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 549 TEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMrldyQHEI 628
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT----QTQL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 629 ENLQNQQDSE-RAAHAKEMEALRAKlmKVIKEKENSLEAIRSKLDKAEDQhlvEMEDTLNKLQ-EAEIKVKELEVLQAKC 706
Cdd:TIGR04523 256 NQLKDEQNKIkKQLSEKQKELEQNN--KKIKELEKQLNQLKSEISDLNNQ---KEQDWNKELKsELKNQEKKLEEIQNQI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 707 NEQTKVIDNFTSQLKAteeklldldaLRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAES-------SKASSITREL 779
Cdd:TIGR04523 331 SQNNKIISQLNEQISQ----------LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKqeiknleSQINDLESKI 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 780 QGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVS----------------------------VQRSMQET 831
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDltnqdsvkeliiknldntresletqlkvLSRSINKI 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 832 VNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKE 909
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 910 RDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeEKKELERKLSDLEKKMETSHNQCQELKARYERATSE 989
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK--------EKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 990 tKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQT 1069
Cdd:TIGR04523 633 -IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYIT 698
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 38044112 1070 NAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEI 1112
Cdd:TIGR04523 699 RMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
353-1180 |
1.08e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 56.98 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 353 LQEALKEKQQHIEQLLAERDLERAEVAKATSHV-GEIEQELALARDGhdqhvlELEAKMDQLRTMVEAADREKVEllnql 431
Cdd:TIGR01612 625 LKKIIENNNAYIDELAKISPYQVPEHLKNKDKIySTIKSELSKIYED------DIDALYNELSSIVKENAIDNTE----- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 432 eeEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVqeVAELRRRLEsnkpaGDVDMSLS-LLQEISSLQ 510
Cdd:TIGR01612 694 --DKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDI--IVEIKKHIH-----GEINKDLNkILEDFKNKE 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 511 EKLEVTRTDHQRE----------ITSLKEHFGAR---EETHQKEIKALYTATEKLS-----KENESLKS----------- 561
Cdd:TIGR01612 765 KELSNKINDYAKEkdelnkykskISEIKNHYNDQiniDNIKDEDAKQNYDKSKEYIktisiKEDEIFKIinemkfmkddf 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 562 --------KLEHANKENSDV----IALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIE 629
Cdd:TIGR01612 845 lnkvdkfiNFENNCKEKIDSeheqFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIK 924
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 630 NLQNQQDSERAAHAKEmEALRAKLMKVIKEKENSLEAIRSKLDKaedqhlveMEDTL-NKLQEAEIKVKELEV--LQAKC 706
Cdd:TIGR01612 925 ICENTKESIEKFHNKQ-NILKEILNKNIDTIKESNLIEKSYKDK--------FDNTLiDKINELDKAFKDASLndYEAKN 995
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 707 NEQTKVIDNFTSQLkateeklldldalrkasseGKSEMKKLRQQLEAAEKQIKHLEieknaesSKASSITRELQGRELKL 786
Cdd:TIGR01612 996 NELIKYFNDLKANL-------------------GKNKENMLYHQFDEKEKATNDIE-------QKIEDANKNIPNIEIAI 1049
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 787 TNLQENLSEvsQVKETLEKELQILKEKFAEASEEAVSvqrsmqeTVNKLHQKEEQFNMlsSDLEKlrenladmEAKFREK 866
Cdd:TIGR01612 1050 HTSIYNIID--EIEKEIGKNIELLNKEILEEAEINIT-------NFNEIKEKLKHYNF--DDFGK--------EENIKYA 1110
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 867 DEreeqlikaKEKLENDIAEIMKMSGDNSSQLTKMN-------DELRLKERDVEELQLKlTKANENASFLQKSIEDMTVK 939
Cdd:TIGR01612 1111 DE--------INKIKDDIKNLDQKIDHHIKALEEIKkksenyiDEIKAQINDLEDVADK-AISNDDPEEIEKKIENIVTK 1181
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 940 AEQSQQ--EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTED-KLKGAR 1016
Cdd:TIGR01612 1182 IDKKKNiyDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPE 1261
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1017 EENSGLLQ-----ELEELRKQADKAKAAQTA------------EDAMQIMEQMTKE------KTETLASLEDTKQTNAKL 1073
Cdd:TIGR01612 1262 IENEMGIEmdikaEMETFNISHDDDKDHHIIskkhdenisdirEKSLKIIEDFSEEsdindiKKELQKNLLDAQKHNSDI 1341
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1074 QNELDTLkeNNLKNVEELNKSKELLtvenQKMEEFRKEIETLKQ---AAAQKSQQLSALQEENVKLAEelGRSRDEVTSH 1150
Cdd:TIGR01612 1342 NLYLNEI--ANIYNILKLNKIKKII----DEVKEYTKEIEENNKnikDELDKSEKLIKKIKDDINLEE--CKSKIESTLD 1413
|
890 900 910
....*....|....*....|....*....|....
gi 38044112 1151 QKLEEE----RSVLNNQLLEMKKRESKFIKDADE 1180
Cdd:TIGR01612 1414 DKDIDEcikkIKELKNHILSEESNIDTYFKNADE 1447
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
986-1190 |
1.17e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 986 ATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQ----MTKEKTETL 1060
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAelaeLEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1061 ASLEDTKQTNAKLQNELDTLKENN----LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKL 1136
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 38044112 1137 AEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSIS 1190
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
615-1290 |
1.34e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 56.62 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 615 TQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIR--SKLDKAE--DQHLVEMEDTLNKLQ 690
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLLKKETiyLQSAQRVELAERQLQ 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 691 EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE--------EKLLDL-DALRKASSEGKSEMK----KLRQQLEAAEKQ 757
Cdd:COG5022 886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLienlefktELIARLkKLLNNIDLEEGPSIEyvklPELNKLHEVESK 965
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 758 IKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQ 837
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIL 1045
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 838 KEEQfnmlssDLEKLrenladMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERDVEELQL 917
Cdd:COG5022 1046 KPLQ------KLKGL------LLLENNQLQARYKALKLRRENSLLDDKQL-------YQLESTENLLKTINVKDLEVTNR 1106
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 918 KLTKAnenASFLQKSIedmtvkaeqSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEI 997
Cdd:COG5022 1107 NLVKP---ANVLQFIV---------AQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF 1174
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 998 LQNLQKTLLD---TEDKLKGAREENSGLLQELEELRKQ-------ADKAKAAQTAEDAMqimeqmtkekTETLASLEDTK 1067
Cdd:COG5022 1175 AALSEKRLYQsalYDEKSKLSSSEVNDLKNELIALFSKifsgwprGDKLKKLISEGWVP----------TEYSTSLKGFN 1244
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1068 QTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKME-EFRKEIETLKQAAAQK-SQQLSALqeeNVKLAEELGRSRD 1145
Cdd:COG5022 1245 NLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPaTINSLLQYINVGLFNAlRTKASSL---RWKSATEVNYNSE 1321
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1146 EVtSHQKLEEERSVLNNQLLEMKKRESKFIKDadeeKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKslhS 1225
Cdd:COG5022 1322 EL-DDWCREFEISDVDEELEELIQAVKVLQLL----KDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPK---E 1393
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1226 VVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQAD-----EDERAQESQIDFLNSVIVDLQRK 1290
Cdd:COG5022 1394 ILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEKSLISLDrnsiyKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
555-1327 |
3.18e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.44 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 555 ENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAM-------EELKVSFSKGLgtETAEFAELKTQIEKMRLDYQHE 627
Cdd:TIGR00606 124 EKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSnwplsegKALKQKFDEIF--SATRYIKALETLRQVRQTQGQK 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 628 IENLQN-----QQDSERAAHAKEM----EALRAKLMKVIKEKENSLEAIRSKLDKAEDQ--HLVEMEDTLNKLQE----- 691
Cdd:TIGR00606 202 VQEHQMelkylKQYKEKACEIRDQitskEAQLESSREIVKSYENELDPLKNRLKEIEHNlsKIMKLDNEIKALKSrkkqm 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 692 ----AEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLdalrkassegKSEMKKLRQQLEAAEKQIKHLEIEKNA 767
Cdd:TIGR00606 282 ekdnSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDC----------QRELEKLNKERRLLNQEKTELLVEQGR 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 768 ESSKASSITRELQGRELKLTNLQENLsEVSQVKETLEKELQI---LKEKFAEASEEAVSVQRSMQETVNKLHQKEEQfnm 844
Cdd:TIGR00606 352 LQLQADRHQEHIRARDSLIQSLATRL-ELDGFERGPFSERQIknfHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ--- 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 845 lssdLEKLREnlaDMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGdNSSQLTKMNDELRLKERDveelqlkLTKANE 924
Cdd:TIGR00606 428 ----ADEIRD---EKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG-SSDRILELDQELRKAERE-------LSKAEK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 925 NASFLQKSIEDMTVKAEQSqqeaakkheeekkelerklsDLEKKMetshnqcqelkaRYERATSETKTKHEEILQNLQKT 1004
Cdd:TIGR00606 493 NSLTETLKKEVKSLQNEKA--------------------DLDRKL------------RKLDQEMEQLNHHTTTRTQMEML 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1005 LLDTEDKLKGAREENSgllQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDtlkeNN 1084
Cdd:TIGR00606 541 TKDKMDKDEQIRKIKS---RHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN----NE 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1085 LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQL 1164
Cdd:TIGR00606 614 LESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1165 LEMKKRESKFIKDADEEKASLQKSISitsalltekdaELEKLRNEVTVLrgenasAKSLHSVVQTLESDKVKLELKVKNL 1244
Cdd:TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELK-----------KKEKRRDEMLGL------APGRQSIIDLKEKEIPELRNKLQKV 756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1245 ELQLKENKRQLSSSSGNTDTQADEDERAQESQIDFlnSVIVDLQRKNQDLKMKVEMMSEAALNGNGDdlNNYDSDDQEKQ 1324
Cdd:TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV--TIMERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQ 832
|
...
gi 38044112 1325 SKK 1327
Cdd:TIGR00606 833 EKQ 835
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
601-1055 |
6.77e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 6.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 601 KGLGTETAEFAELKTQIEKMRldyqHEIENLQNQQDSERAAHAKEMEALRA-KLMKVIKEKENSLEAIRSKLDKAEdQHL 679
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELE----EELEELEAELEELREELEKLEKLLQLlPLYQELEALEAELAELPERLEELE-ERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 680 VEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNftSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIK 759
Cdd:COG4717 156 EELRELEEELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 760 HLEIEKNAEsskasSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKE 839
Cdd:COG4717 231 QLENELEAA-----ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 840 EqfnmlssdleklrenladMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKL 919
Cdd:COG4717 306 E------------------LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 920 TKANENASFLQ---KSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEE 996
Cdd:COG4717 368 LEQEIAALLAEagvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 997 iLQNLQKTLLDTEDKLKGAREEN--SGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQMTKE 1055
Cdd:COG4717 448 -LEELREELAELEAELEQLEEDGelAELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
736-1074 |
9.36e-07 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 53.68 E-value: 9.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 736 ASSEGKsemkklrQQLEAAEKQIKHLEIEKNAESSKASSitrELQGRELKlTNLQENLSEVSQVKETLEKELQILKEKFA 815
Cdd:NF012221 1536 ATSESS-------QQADAVSKHAKQDDAAQNALADKERA---EADRQRLE-QEKQQQLAAISGSQSQLESTDQNALETNG 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 816 EASEEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKL----RENLADmeakfREKDEREEQLIKAKEKLENDIAEImkm 890
Cdd:NF012221 1605 QAQRDAILEeSRAVTKELTTLAQGLDALDSQATYAGESgdqwRNPFAG-----GLLDRVQEQLDDAKKISGKQLADA--- 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 891 SGDNSSQLTKMNDELRLKERDVEelqlkltKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKElerklsdlEKKME 970
Cdd:NF012221 1677 KQRHVDNQQKVKDAVAKSEAGVA-------QGEQNQANAEQDIDDAKADAEKRKDDALAKQNEAQQA--------ESDAN 1741
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 971 TSHNQCQElkaRYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELrKQADKAKAAQTAEDAMQIME 1050
Cdd:NF012221 1742 AAANDAQS---RGEQDASAAENKANQAQADAKGAKQDESDKPNRQGAAGSGLSGKAYSV-EGVAEPGSHINPDSPAAADG 1817
|
330 340
....*....|....*....|....*
gi 38044112 1051 QMTKEKTE-TLASLEDTKQTNAKLQ 1074
Cdd:NF012221 1818 RFSEGLTEqEQEALEGATNAVNRLQ 1842
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
461-1061 |
9.37e-07 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 53.60 E-value: 9.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 461 SEKSRIMELEKDLALRVQEVAELRRRLE---SNKPAGDVDMSLSLLQEISSLQEKLEVTRTdhqreiTSLKEHFgaREET 537
Cdd:pfam07111 27 TQRPTVTMWEQDVSGDGQGPGRRGRSLElegSQALSQQAELISRQLQELRRLEEEVRLLRE------TSLQQKM--RLEA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 538 HQKEIKALYTATEKLSKENESLKSKL-----------EHANKENSDVIALWKSKLETAIASHQQAMEELkVSFSKGL--- 603
Cdd:pfam07111 99 QAMELDALAVAEKAGQAEAEGLRAALagaemvrknleEGSQRELEEIQRLHQEQLSSLTQAHEEALSSL-TSKAEGLeks 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 604 --------GTETAEFAELKTQIEKMRLDYQHEIENLQNQ------------QDSERAAHAKEMEALRAKL---MKVIKEK 660
Cdd:pfam07111 178 lnsletkrAGEAKQLAEAQKEAELLRKQLSKTQEELEAQvtlveslrkyvgEQVPPEVHSQTWELERQELldtMQHLQED 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 661 ENSLEAIRSKLdkaedQHLVEMEDTLNKLQEAEI--KVKELEVLQAKCNEQTKvidnftSQLKATEEKLLDLDALRKASS 738
Cdd:pfam07111 258 RADLQATVELL-----QVRVQSLTHMLALQEEELtrKIQPSDSLEPEFPKKCR------SLLNRWREKVFALMVQLKAQD 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 739 -EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEA 817
Cdd:pfam07111 327 lEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFV 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 818 SEEAVSVQRSMQETVNKLHQKEEQF----NMLSSDLEKLRENLADMEAKFREKDEREEQ--LIKAKEKLENDIAEIMKMS 891
Cdd:pfam07111 407 VNAMSSTQIWLETTMTRVEQAVARIpslsNRLSYAVRKVHTIKGLMARKVALAQLRQEScpPPPPAPPVDADLSLELEQL 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 892 GDNSSQLtkmNDELRLKERDVeelQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMET 971
Cdd:pfam07111 487 REERNRL---DAELQLSAHLI---QQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 972 SHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQ 1051
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEK--ERNQELRRLQDE 638
|
650
....*....|
gi 38044112 1052 MTKEKTETLA 1061
Cdd:pfam07111 639 ARKEEGQRLA 648
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
468-1209 |
1.12e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 53.29 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 468 ELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLlqEISSLQEKLEVTR-------TDHQREITSLKEHFGAREEThQK 540
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAQRdlnqllqQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 541 EIKALYTATEKLSKENESLKSKLEHANKEnsdvIALWKSKLETAIASHQQAMEELKvsfSKGLGTETAEFAELKTQ---I 617
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEEMELR----IETQKQTLGARDESIKKLLEMLQ---SKGLPKKSGEEDWERTRriaE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 618 EKMRLDY------QHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQE 691
Cdd:pfam10174 190 AEMQLGHlevlldQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTED 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 692 AEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLL----DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 767
Cdd:pfam10174 270 REEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLalqtKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 768 esskassITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKfaeaseeavsvqrsmqetvnkLHQKEEQFNMLSS 847
Cdd:pfam10174 350 -------LRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDM---------------------LDVKERKINVLQK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 848 DLEKLRENLadmeakfREKDEREEQLIKAKEKLENDiaeimkmSGDNSSQLTKMNDELRLKERDVEELQLkltkanenas 927
Cdd:pfam10174 402 KIENLQEQL-------RDKDKQLAGLKERVKSLQTD-------SSNTDTALTTLEEALSEKERIIERLKE---------- 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 928 flQKSIEDmTVKAEQSQQEAAKKHeeekkelerklsDLEKKMETSHNQCQElkaryeRATSETKTKheEILQNLQKTLLD 1007
Cdd:pfam10174 458 --QRERED-RERLEELESLKKENK------------DLKEKVSALQPELTE------KESSLIDLK--EHASSLASSGLK 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1008 TEDKLKGAREEnsgLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENnLKN 1087
Cdd:pfam10174 515 KDSKLKSLEIA---VEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGI-LRE 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1088 VEELNKSKElltvenQKMEEFRKEIETLKQAAAQKSQQLSALQ-EENVKLAEELGRSRDEvtshqKLEEERSVLNNQLLE 1166
Cdd:pfam10174 591 VENEKNDKD------KKIAELESLTLRQMKEQNKKVANIKHGQqEMKKKGAQLLEEARRR-----EDNLADNSQQLQLEE 659
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 38044112 1167 MKKRESKFIKDADEEKASLqksiSITSALLTEKDAELEKLRNE 1209
Cdd:pfam10174 660 LMGALEKTRQELDATKARL----SSTQQSLAEKDGHLTNLRAE 698
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
785-1014 |
1.32e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 785 KLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFR 864
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 865 EKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR-----LKERdVEELQLKLTKANENASFLQKSIEDMTvK 939
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylapaRREQ-AEELRADLAELAALRAELEAERAELE-A 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 940 AEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKG 1014
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
797-1044 |
1.85e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 797 SQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 876
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 877 KEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAkkheeekk 956
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLA---LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-------- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 957 elerklsDLEKKMETSHNQCQELKARYERATSEtKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKA 1036
Cdd:COG4942 168 -------ELEAERAELEALLAELEEERAALEAL-KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
....*...
gi 38044112 1037 KAAQTAED 1044
Cdd:COG4942 240 AERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
880-1222 |
2.18e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 880 LENDIAEIMKMSG--------------DNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQ 945
Cdd:TIGR02169 140 LQGDVTDFISMSPverrkiideiagvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE----KAERYQA 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 946 EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREENSGLLQE 1025
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE-IEQLLEELNKKIKDLGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1026 -LEELrkQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKElltvenqK 1104
Cdd:TIGR02169 295 kIGEL--EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------E 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1105 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS----HQKLEEERSVLNNQLLEMKKRESKFI---KD 1177
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeeLQRLSEELADLNAAIAGIEAKINELEeekED 445
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 38044112 1178 ADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1222
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
355-814 |
2.74e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 355 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 434
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 435 KRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdvdmslsllQEISSLQEKLE 514
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE---------------EELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 515 VTRTDHQrEITSLKEHFGAREETHQKEIKALYTAT----EKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQ 590
Cdd:COG4717 224 ELEEELE-QLENELEAAALEERLKEARLLLLIAAAllalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 591 AMEELKvsfskgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENsLEAIRSK 670
Cdd:COG4717 303 EAEELQ------ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEL-EQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 671 LDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKaTEEKLLDLDALRKASSEGKSEMKKLRQQ 750
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38044112 751 LEAAEKQIKHLEieknaESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKF 814
Cdd:COG4717 455 LAELEAELEQLE-----EDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
691-1275 |
5.95e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 691 EAEIKVKElevlqAKCNEQTKVIDnftSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLE--IEKNAE 768
Cdd:pfam05483 98 EAELKQKE-----NKLQENRKIIE---AQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKetCARSAE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 769 SSKASSITRElQGRELKL---TNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVN-----------K 834
Cdd:pfam05483 170 KTKKYEYERE-ETRQVYMdlnNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINdkekqvsllliQ 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 835 LHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEE 914
Cdd:pfam05483 249 ITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQ 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 915 L-------QLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKmETSHNQCQELKARYERAT 987
Cdd:pfam05483 329 LteekeaqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK-SSELEEMTKFKNNKEVEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 988 SETKT--KHEEILQNLQKTLLDTEDKLKGAREENSGLLQELE-ELRKQADKAKAAQTAED--AMQIMEQMTKEKTETLAS 1062
Cdd:pfam05483 408 EELKKilAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREkEIHDLEIQLTAIKTSEEhyLKEVEDLKTELEKEKLKN 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1063 LEDTKQTNaKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEnvklaeeLGR 1142
Cdd:pfam05483 488 IELTAHCD-KLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE-------FIQ 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1143 SRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEekaSLQKSISITSALLTEKDAELEKLRNEVTvlrgenASAKS 1222
Cdd:pfam05483 560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCN---NLKKQIENKNKNIEELHQENKALKKKGS------AENKQ 630
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 38044112 1223 LHSvvqtlesdkvkLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQES 1275
Cdd:pfam05483 631 LNA-----------YEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEK 672
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
352-569 |
8.31e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 8.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 432 EEEKRKVEDL---QFRVEEESITKGDLEVATVSEKSRIMELEKDLA-LRVQEVAELRRRLESNKpagdvdmslSLLQEIS 507
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELA---------ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 508 SLQEKLEVTRTDHQREITSLKEHFGAREET---HQKEIKALYTATEKLSKENESLKSKLEHANKE 569
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
731-944 |
1.48e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 731 DALRKASSEGKSEMKKLRQQLEAAEKQIKHLeieknAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQIL 810
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 811 KEKFAEASEEAVSVQRS--MQETVNKLHQKEEQFNMLSS-------DLEKLRENLADMEAKFREKDEREEQLIKAK-EKL 880
Cdd:COG3206 246 RAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAElEAL 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38044112 881 ENDIAEIMKMSGDNSSQLTKMNDelrlKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQ 944
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
833-1303 |
1.75e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 833 NKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDV 912
Cdd:pfam05557 16 NEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 913 EElqlKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKMETSHNQCQELKARYERAtsetkT 992
Cdd:pfam05557 96 ES---QLADAREVISCLKNELSELRRQIQRAEL---------------ELQSTNSELEELQERLDLLKAKASEA-----E 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 993 KHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQadKAKAAQTAEdamqiMEQMTKEKTETLASLEDTKQTNAK 1072
Cdd:pfam05557 153 QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELERLREHNKHLNENIENKLL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1073 LQNELDTLKeNNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQK-------SQQLSALQEENVKLAEELG---- 1141
Cdd:pfam05557 226 LKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQLQQREIVLKEENSslts 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1142 RSRDEVTSHQKLEEERSVLNNQLLEMKKReskfIKDADEEKASLQKSISITSallTEKDAELEKLRNEVTVLRGENASAK 1221
Cdd:pfam05557 305 SARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRAILESYDKELTMSNYSPQ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1222 SLHSVvqtLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDE----RAQESQID--FLNSVIVDLQRKNQDLK 1295
Cdd:pfam05557 378 LLERI---EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADpsYSKEEVDSLRRKLETLE 454
|
....*...
gi 38044112 1296 MKVEMMSE 1303
Cdd:pfam05557 455 LERQRLRE 462
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
645-930 |
1.94e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 645 EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDtlNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE 724
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKE--EKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 725 EKLLDLDALRKasSEGKSEMKKLRQQLEAAE-KQIKHLEIEKNAESSKASSITRELQG-RELKLT------NLQENLSEV 796
Cdd:pfam17380 345 ERERELERIRQ--EERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAaRKVKILeeerqrKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 797 SQVK----ETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFR-----EKD 867
Cdd:pfam17380 423 EQIRaeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkilekELE 502
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 868 EREEQLIKAKEK---LENDIAEimKMSGDNSSQLTKMNDELRLKERDVEE---LQLKLTKANENASFLQ 930
Cdd:pfam17380 503 ERKQAMIEEERKrklLEKEMEE--RQKAIYEEERRREAEEERRKQQEMEErrrIQEQMRKATEERSRLE 569
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
664-1295 |
2.01e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 664 LEAIRSKLDKAEdQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLD--LDALRKASSEGK 741
Cdd:pfam12128 236 IMKIRPEFTKLQ-QEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 742 SEMKKLRQQLEAAEKQIKHLEiEKNAESSKASsitrelqgrelkltnlQENLSEVSQVKETLEKELQILKEKfaeaseea 821
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFL-DADIETAAAD----------------QEQLPSWQSELENLEERLKALTGK-------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 822 vsvQRSMQETVNKLHQKEEQFNmlSSDLEKLRENLADM-EAKFREKDEREEQLikakEKLENDIAEIMKmsgdnsSQLTK 900
Cdd:pfam12128 370 ---HQDVTAKYNRRRSKIKEQN--NRDIAGIKDKLAKIrEARDRQLAVAEDDL----QALESELREQLE------AGKLE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 901 MNDELRLKERDVEELQLKLTKAN-ENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQC--- 976
Cdd:pfam12128 435 FNEEEYRLKSRLGELKLRLNQATaTPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsrr 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 977 -QELKARYERATSETKTKHEEILQNLQKTLLDTED----------------------------------KLKGAREENSG 1021
Cdd:pfam12128 515 lEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvispellhrtdldpevwdgsvggelnlygvKLDLKRIDVPE 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1022 LLQELEELRKQADKAKAA-QTAED-AMQIMEQMTKEKTET-LASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELL 1098
Cdd:pfam12128 595 WAASEEELRERLDKAEEAlQSAREkQAAAEEQLVQANGELeKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALA 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1099 TVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERsvLNNQLLEMKKRESKFIKDA 1178
Cdd:pfam12128 675 ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLAL--LKAAIAARRSGAKAELKAL 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1179 DEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQ-TLESDKVKLELKVKNLELQLKENKRQLSS 1257
Cdd:pfam12128 753 ETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQeTWLQRRPRLATQLSNIERAISELQQQLAR 832
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 38044112 1258 SSGNTDTQADEDER------AQESQIDFLNSVIVDLQRKNQDLK 1295
Cdd:pfam12128 833 LIADTKLRRAKLEMerkaseKQQVRLSENLRGLRCEMSKLATLK 876
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-655 |
2.61e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 415
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 416 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEVAtvsEKSRIMELEKDLALRVQEVAELRRRLEsnkpagd 495
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDE---LQDRLEAA---EDLARLELRALLEERFAAALGDAVERE------- 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 496 vdMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSK-ENESL---KSKLEHANKENS 571
Cdd:COG4913 767 --LRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLpeyEERFKELLNENS 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 572 DV-IALWKSKLETAIASHQQAMEEL-----KVSFSKG----LGTETAEFAELKtqiekmrlDYQHEI----ENLQNQQDS 637
Cdd:COG4913 845 IEfVADLLSKLRRAIREIKERIDPLndslkRIPFGPGrylrLEARPRPDPEVR--------EFRQELravtSGASLFDEE 916
|
330
....*....|....*...
gi 38044112 638 ERAAHAKEMEALRAKLMK 655
Cdd:COG4913 917 LSEARFAALKRLIERLRS 934
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
729-1131 |
2.88e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 729 DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESS------KASSITRELQGRELKLTNLQENLSEVSQVKET 802
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDhlnlvqTALRQQEKIERYQEDLEELTERLEEQEEVVEE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 803 LEKELQILKEKFAEASEEAVSVQRSM---QETVNKLHQKEEQFNMLSSDLEKLR----------ENLADMEAKFREK-DE 868
Cdd:COG3096 373 AAEQLAEAEARLEAAEEEVDSLKSQLadyQQALDVQQTRAIQYQQAVQALEKARalcglpdltpENAEDYLAAFRAKeQQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 869 REEQLIKAKEKLenDIAEIMKMSGDNSSQL-TKMNDElrlkerdVEELQlkltkANENASFLQKSIEDMTVKAEQSQQEA 947
Cdd:COG3096 453 ATEEVLELEQKL--SVADAARRQFEKAYELvCKIAGE-------VERSQ-----AWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 948 AKKheeekkelerklSDLEKKMEtSHNQCQELKARYERATSETKTKHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQ 1024
Cdd:COG3096 519 AQL------------AELEQRLR-QQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1025 ELEELRKQ----ADKAKAAQTAEDAMQIMEQMTKEktetlaSLEDTKQTNAKLQNELDTLKennlknveELNKSKELLtv 1100
Cdd:COG3096 586 QLEQLRARikelAARAPAWLAAQDALERLREQSGE------ALADSQEVTAAMQQLLERER--------EATVERDEL-- 649
|
410 420 430
....*....|....*....|....*....|.
gi 38044112 1101 eNQKMEEFRKEIETLKQAAAQKSQQLSALQE 1131
Cdd:COG3096 650 -AARKQALESQIERLSQPGGAEDPRLLALAE 679
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
352-1033 |
3.04e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQQHIEQLLAER---DLERAEVAKA--------TSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAA 420
Cdd:pfam12128 312 AADAAVAKDRSELEALEDQHgafLDADIETAAAdqeqlpswQSELENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 421 DREKVELLNQLEEEKRKVEDLQFRVEEESITK--GDLEVATVSEKSRIMELEKDLALRVqevAELRRRLESNKPAGDVDM 498
Cdd:pfam12128 388 NNRDIAGIKDKLAKIREARDRQLAVAEDDLQAleSELREQLEAGKLEFNEEEYRLKSRL---GELKLRLNQATATPELLL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 499 SLSLLQE-ISSLQEKLE---VTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSK----LEHANKEn 570
Cdd:pfam12128 465 QLENFDErIERAREEQEaanAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtlLHFLRKE- 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 571 sdvIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENlqnQQDSERAAHAKEMEALR 650
Cdd:pfam12128 544 ---APDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE---ELRERLDKAEEALQSAR 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 651 AKlmkvIKEKENSLEAIRSKLDKAEdqhlVEMEDTLNKLQEAEIKVKELEVLQAkcNEQTKVIDNFTSQLKATEEKLLDL 730
Cdd:pfam12128 618 EK----QAAAEEQLVQANGELEKAS----REETFARTALKNARLDLRRLFDEKQ--SEKDKKNKALAERKDSANERLNSL 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 731 DAlrkassegksEMKKLRQQLEAAEKQIKHleieknaesskassitrelQGRELKLTNLQENLSEVSQVKETLEKELQIL 810
Cdd:pfam12128 688 EA----------QLKQLDKKHQAWLEEQKE-------------------QKREARTEKQAYWQVVEGALDAQLALLKAAI 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 811 KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMeAKFREKDEREEQLIKAKEKLENDiaeimkm 890
Cdd:pfam12128 739 AARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERI-AVRRQEVLRYFDWYQETWLQRRP------- 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 891 sgdnssqltKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdMTVKAEQSQQEAAKKHEEEKKELERKLSDLekKME 970
Cdd:pfam12128 811 ---------RLATQLSNIERAISELQQQLARLIADTKLRRAKLE-MERKASEKQQVRLSENLRGLRCEMSKLATL--KED 878
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 38044112 971 TSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDteDKLKGAREENSGLLQELEELRKQA 1033
Cdd:pfam12128 879 ANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH--FKNVIADHSGSGLAETWESLREED 939
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
351-1084 |
3.24e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 351 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlARDGHDQHVLELEAKMDQLRTMVEaadREKVELLNQ 430
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE-ALKTELEDTLDTTAAQQELRSKRE---QEVTELKKA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 431 LEEEKRK---------------VEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLAL---RVQEVAELRRRLES--- 489
Cdd:pfam01576 336 LEEETRSheaqlqemrqkhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTlqqAKQDSEHKRKKLEGqlq 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 490 -------------NKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIK---ALYTATEKLS 553
Cdd:pfam01576 416 elqarlseserqrAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRqklNLSTRLRQLE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 554 KENESLKSKLEHANKEnsdvialwKSKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIENLqN 633
Cdd:pfam01576 496 DERNSLQEQLEEEEEA--------KRNVERQLSTLQAQLSDMK--------KKLEEDAGTLEALEEGKKRLQRELEAL-T 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 634 QQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRS------KLDKAEDQHLVEMEDTLNKLQ------EAEIKVKELEV 701
Cdd:pfam01576 559 QQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlvsnleKKQKKFDQMLAEEKAISARYAeerdraEAEAREKETRA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 702 LQ--AKCNEQTKVIDNFTSQLKATEEKLLDL----DALRKASSEGKSEMKKLRQQLEAAEKQIKHLE------------I 763
Cdd:pfam01576 639 LSlaRALEEALEAKEELERTNKQLRAEMEDLvsskDDVGKNVHELERSKRALEQQVEEMKTQLEELEdelqatedaklrL 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 764 EKNAESSKAsSITRELQGRELKltNLQENLSEVSQVKEtLEKELQ--------------ILKEKFAEASEEAVSVQRSMQ 829
Cdd:pfam01576 719 EVNMQALKA-QFERDLQARDEQ--GEEKRRQLVKQVRE-LEAELEderkqraqavaakkKLELDLKELEAQIDAANKGRE 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 830 ETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER----EEQLIKAKEKL----------ENDIAEIMKMSGDNS 895
Cdd:pfam01576 795 EAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKlknlEAELLQLQEDLaaserarrqaQQERDELADEIASGA 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 896 SQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKelerklsdLEKKMETSHNQ 975
Cdd:pfam01576 875 SGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQK--------SESARQQLERQ 946
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 976 CQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSG--------------LLQELEELRKQADKAKaaQT 1041
Cdd:pfam01576 947 NKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAanklvrrtekklkeVLLQVEDERRHADQYK--DQ 1024
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 38044112 1042 AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENN 1084
Cdd:pfam01576 1025 AEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESN 1067
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
608-1107 |
3.97e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.20 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 608 AEFAELKTQIEKMRLDY-QHEIENLQNQQDSERAAHA---------KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEdQ 677
Cdd:pfam05557 2 AELIESKARLSQLQNEKkQMELEHKRARIELEKKASAlkrqldresDRNQELQKRIRLLEKREAEAEEALREQAELNR-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 678 HLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQT----KVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEA 753
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELselrRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 754 -------AEKQIKHLEIEkNAESSKASSITRELQGRELKLTNLQ----------ENLSEVSQVKETLEKELQILK---EK 813
Cdd:pfam05557 161 qqsslaeAEQRIKELEFE-IQSQEQDSEIVKNSKSELARIPELEkelerlrehnKHLNENIENKLLLKEEVEDLKrklER 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 814 FAEASEEAVSVQRSMQETVNKLHQKEEQFNM----------LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 883
Cdd:pfam05557 240 EEKYREEAATLELEKEKLEQELQSWVKLAQDtglnlrspedLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 884 IAEIMKmsgdnssQLTKMNDELRLKERDVEELQLKLTKANENASFLQ---KSIEDMTVKAEQSQQEAAKKHE-------- 952
Cdd:pfam05557 320 LAQYLK-------KIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRailESYDKELTMSNYSPQLLERIEEaedmtqkm 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 953 -EEKKELERKLSDLEKKMETSHNQCQ----ELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELE 1027
Cdd:pfam05557 393 qAHNEEMEAQLSVAEEELGGYKQQAQtlerELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELE 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1028 ELRKQAD----KAKAAQTAEDAMQIMEQMTKEKTETL-ASLEDTKQTNAKLQNELD-------TLKENNLKNVEELNKSK 1095
Cdd:pfam05557 473 RRCLQGDydpkKTKVLHLSMNPAAEAYQQRKNQLEKLqAEIERLKRLLKKLEDDLEqvlrlpeTTSTMNFKEVLDLRKEL 552
|
570
....*....|..
gi 38044112 1096 ELLTVENQKMEE 1107
Cdd:pfam05557 553 ESAELKNQRLKE 564
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
401-1036 |
4.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 401 QHVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfrveeesitkgdlevatvseksRIMELEKDLALRVQEV 480
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE----------------------PIRELAERYAAARERL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 481 AELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEvtrtDHQREITSLKehfgAREETHQKEIKALYTATEKLSKEN-ESL 559
Cdd:COG4913 272 AELEYLRAALRLWFAQRRLELLEAELEELRAELA----RLEAELERLE----ARLDALREELDELEAQIRGNGGDRlEQL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 560 KSKLEHANKEnsdvialwKSKLETAIASHQQAMEELKVSfskgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSER 639
Cdd:COG4913 344 EREIERLERE--------LEERERRRARLEALLAALGLP----LPASAEEFAALRAEAAALLEALEEELEALEEALAEAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 640 AAHAKEMEALRAklmkviKEKE-NSLEAIRSKLdkaeDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKCNEQ----- 709
Cdd:COG4913 412 AALRDLRRELRE------LEAEiASLERRKSNI----PARLLALRDALA--EALGLDEAELpfvgELIEVRPEEErwrga 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 710 ----------------------TKVIDN--FTSQLKATEEKLLDLDALRKASSEG-----------------KSEMKKLR 748
Cdd:COG4913 480 iervlggfaltllvppehyaaaLRWVNRlhLRGRLVYERVRTGLPDPERPRLDPDslagkldfkphpfrawlEAELGRRF 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 --------QQLEAAEK------QIKHLEI--EKNAESSKAS------SITRELQGRELKLTNLQENLSEVSQVKETLEKE 806
Cdd:COG4913 560 dyvcvdspEELRRHPRaitragQVKGNGTrhEKDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 807 LQILKEKFAEAS--EEAVSVQRSMQETVNKLHQKEEQFNML---SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLE 881
Cdd:COG4913 640 LDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 882 NDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkeleRK 961
Cdd:COG4913 720 KELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLN--------------RA 785
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38044112 962 LSDLEKKMETsHNQCQELKARYERATSETKTKHEEILQNLQKT-LLDTEDKLKGAREENSGllQELEELRKQADKA 1036
Cdd:COG4913 786 EEELERAMRA-FNREWPAETADLDADLESLPEYLALLDRLEEDgLPEYEERFKELLNENSI--EFVADLLSKLRRA 858
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1082-1328 |
4.72e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 47.64 E-value: 4.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1082 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAA----AQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEER 1157
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlgenAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1158 SVLNNQLLEMKKrESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS---LHSVVQTLESDK 1234
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1235 VKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERaqesQIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGDDL 1313
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQR----QIEQATSSNEEVSKLLNELiSELNKVMREADEESQSRLE 466
|
250
....*....|....*
gi 38044112 1314 NNYDSDDQEKQSKKK 1328
Cdd:COG5185 467 EAYDEINRSVRSKKE 481
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
460-910 |
4.78e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 460 VSEKSRIMELEKDLAlrvqEVAELRRRLESnkpagDVDMS---LSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREE 536
Cdd:COG3096 302 AEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 537 TH--QKEIKALYTATEKlskENESLKSKLehankensdviALWKSKLET----AIASHQ--QAMEELKVSFskGLGTETA 608
Cdd:COG3096 373 AAeqLAEAEARLEAAEE---EVDSLKSQL-----------ADYQQALDVqqtrAIQYQQavQALEKARALC--GLPDLTP 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 609 EFAELKTQIEKMRLDYQHEiENLQNQQ-----DSERAAHAKEMEALRAKLMKVikEKENSLEAIRSKLDKAEDQ------ 677
Cdd:COG3096 437 ENAEDYLAAFRAKEQQATE-EVLELEQklsvaDAARRQFEKAYELVCKIAGEV--ERSQAWQTARELLRRYRSQqalaqr 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 678 ------HLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLkatEEKLLDLDALRKASSEGKSEMkklRQQL 751
Cdd:COG3096 514 lqqlraQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAEL---EAQLEELEEQAAEAVEQRSEL---RQQL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 752 EAAEKQIKHLEieknaessKASSITRELQGRelkLTNLQEnlsevsQVKETLekelqilkekfaeasEEAVSVQRSMQET 831
Cdd:COG3096 588 EQLRARIKELA--------ARAPAWLAAQDA---LERLRE------QSGEAL---------------ADSQEVTAAMQQL 635
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 832 VNKLHQKEeqfnmlssdleklrenladmeakfREKDereeQLIKAKEKLENDIAEIMKMSGDNSSQLtkmndeLRLKER 910
Cdd:COG3096 636 LEREREAT------------------------VERD----ELAARKQALESQIERLSQPGGAEDPRL------LALAER 680
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1029-1236 |
6.99e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1029 LRKQADKAKAAQTAEDAMQIMEQMTKE-KTETLASLEDTKQTNAKLQNELD---TLKENNLKNVEE--------LNKSKE 1096
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKEaEAIKKEALLEAKEEIHKLRNEFEkelRERRNELQKLEKrllqkeenLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1097 LLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL-GRSRDEVTshqkleeersvlnNQLLEMKKRESKfi 1175
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAK-------------EILLEKVEEEAR-- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 1176 kdadEEKASLQKSIsitsalltEKDAELE--KLRNEVTVL---R--GENASAKSLhSVVqTLESDKVK 1236
Cdd:PRK12704 169 ----HEAAVLIKEI--------EEEAKEEadKKAKEILAQaiqRcaADHVAETTV-SVV-NLPNDEMK 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
963-1142 |
7.19e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 963 SDLEKKMETSHNQCQELKARYERATSETKTKHEEI-------------LQNLQKTLLDTEDKLKGAREENSGLLQELEEL 1029
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaalerriaalarrIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1030 RKQ-ADKAKAAQT------------------AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 1090
Cdd:COG4942 103 KEElAELLRALYRlgrqpplalllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 38044112 1091 LNKSKELLtveNQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1142
Cdd:COG4942 183 LEEERAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
745-906 |
9.19e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 745 KKLRQQLEAAEKQIKHL--EIEKNAESSKassitrelqgrELKLTNLQEnlsEVSQVKETLEKELQILKEKFAEaseeav 822
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRIleEAKKEAEAIK-----------KEALLEAKE---EIHKLRNEFEKELRERRNELQK------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 823 svqrsmQEtvNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREK----DEREEQLIKAKEKLENDIAEIMKMSGDNSSQ- 897
Cdd:PRK12704 87 ------LE--KRLLQKEENLDRKLELLEKREEELEKKEKELEQKqqelEKKEEELEELIEEQLQELERISGLTAEEAKEi 158
|
170
....*....|
gi 38044112 898 -LTKMNDELR 906
Cdd:PRK12704 159 lLEKVEEEAR 168
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1330-1347 |
1.21e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.21e-04
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
356-529 |
1.31e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 356 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 421
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 422 REKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdvdmslS 501
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLERELE------------E 483
|
170 180 190
....*....|....*....|....*....|..
gi 38044112 502 LLQEISSLQEKLEVTRT----DHQREITSLKE 529
Cdd:COG2433 484 ERERIEELKRKLERLKElwklEHSGELVPVKV 515
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
624-1138 |
1.47e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 624 YQHEIENLQNQQDSERAAHA---KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEME--DTLNKLQEAEIKVKE 698
Cdd:PRK01156 195 SNLELENIKKQIADDEKSHSitlKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEikTAESDLSMELEKNNY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 699 LEVLQAKCNEQTkvidnfTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknaESSKASSITRE 778
Cdd:PRK01156 275 YKELEERHMKII------NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS-----VLQKDYNDYIK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 779 LQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEavsVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD 858
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN---IERMSAFISEILKIQEIDPDAIKKELNEINVKLQD 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 859 MEAKFREKDEREEQLIKAKEKLENDiAEIMKMSGDNSSQLTKMNDELrlKERDVEELQLKLTKANENASFLQKSIEDMTV 938
Cdd:PRK01156 421 ISSKVSSLNQRIRALRENLDELSRN-MEMLNGQSVCPVCGTTLGEEK--SNHIINHYNEKKSRLEEKIREIEIEVKDIDE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 939 KAEQSQQEAAKKHEEEKkelerklsdleKKMETSHNQCQELKARYERatsetktkheeiLQNLQKTLLDTEDKLKGAREE 1018
Cdd:PRK01156 498 KIVDLKKRKEYLESEEI-----------NKSINEYNKIESARADLED------------IKIKINELKDKHDKYEEIKNR 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1019 -NSGLLQELEELRKQADKAKAAQTAEDAMQIMEQmTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE----LNK 1093
Cdd:PRK01156 555 yKSLKLEDLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENeannLNN 633
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 38044112 1094 SKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAE 1138
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIND 678
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
617-1096 |
1.54e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 617 IEKMRLDYQHEIENLQNQQD---SERAAHAKEMEALR--AKLMKV--------IKEKENSLEAIRSKLDKAEDQ------ 677
Cdd:pfam10174 245 LERNIRDLEDEVQMLKTNGLlhtEDREEEIKQMEVYKshSKFMKNkidqlkqeLSKKESELLALQTKLETLTNQnsdckq 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 678 HLVEMEDTLN-KLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLK-ATEEKlldldalrkasSEGKSEMKKLRQQLEAAE 755
Cdd:pfam10174 325 HIEVLKESLTaKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQdLTEEK-----------STLAGEIRDLKDMLDVKE 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 756 KQIKHLEieknaesSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASE--EAVSVQRSMQEtvn 833
Cdd:pfam10174 394 RKINVLQ-------KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERiiERLKEQRERED--- 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 834 klHQKEEQFNMLSSDLEKLRENLADMEakfREKDEREEQLIKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERDVE 913
Cdd:pfam10174 464 --RERLEELESLKKENKDLKEKVSALQ---PELTEKESSLIDLKEHASSLASSGLK----KDSKLKSLEIAVEQKKEECS 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 914 ELQLKLTKANENASFLQKSiEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLE--KKMETSHNQCQELKARYERATSETK 991
Cdd:pfam10174 535 KLENQLKKAHNAEEAVRTN-PEINDRIRLLEQEVARYKEESGKAQAEVERLLGilREVENEKNDKDKKIAELESLTLRQM 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 992 TKHEEILQNLQktLLDTEDKLKGAreensGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA 1071
Cdd:pfam10174 614 KEQNKKVANIK--HGQQEMKKKGA-----QLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLA 686
|
490 500
....*....|....*....|....*
gi 38044112 1072 KLQNELDTLKENNLKNVEELNKSKE 1096
Cdd:pfam10174 687 EKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
503-915 |
1.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 503 LQEISSLQEKLEVTRTDHQ--REITSLKEHFGAREETHQKEIKALYTATEKLSK--ENESLKSKLEHANKENSDVIALWK 578
Cdd:COG4717 70 LKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 579 sKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLmkviK 658
Cdd:COG4717 150 -ELEERLEELRELEEELE--------ELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL----E 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 659 EKENSLEAIRSKLDKAEDQHlvEMEDTLNKLQEAEIKVK---ELEVLQAKCNEQTKVIDNFTSQLKATEEkLLDLDALRK 735
Cdd:COG4717 217 EAQEELEELEEELEQLENEL--EAAALEERLKEARLLLLiaaALLALLGLGGSLLSLILTIAGVLFLVLG-LLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 736 ASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGREL--KLTNLQENLSEVSQVKETL-----EKELQ 808
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldRIEELQELLREAEELEEELqleelEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 809 ILKEKFAEASEEA----VSVQRSMQETVNKLHQKEEQFN---------MLSSDLEKLRENLADMEAKFREKDEREEQLIK 875
Cdd:COG4717 374 ALLAEAGVEDEEElraaLEQAEEYQELKEELEELEEQLEellgeleelLEALDEEELEEELEELEEELEELEEELEELRE 453
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 38044112 876 AKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERDVEEL 915
Cdd:COG4717 454 ELAELEAELEQLE-----EDGELAELLQELEELKAELREL 488
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
845-1202 |
1.59e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 845 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 924
Cdd:pfam02463 147 IAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 925 NASFLQKSIEdmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQcQELKARYERATSETKTKHEEILQNLQKT 1004
Cdd:pfam02463 227 LYLDYLKLNE----ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE-NKEEEKEKKLQEEELKLLAKEEEELKSE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1005 LLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENN 1084
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEK--EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1085 LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQL 1164
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350
....*....|....*....|....*....|....*...
gi 38044112 1165 LEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAE 1202
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
854-1254 |
1.86e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 854 ENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERDVEELQLKLTKANENASFLQKSI 933
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL---------------EELEAELEELREELEKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 934 E-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKL 1012
Cdd:COG4717 136 AlEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1013 KGAREENSGLLQELEELRKQADKAKAAQTAEDAMQI--------------------------------------MEQMTK 1054
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1055 EKTETLASLEDTKQ-------TNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQlS 1127
Cdd:COG4717 296 EKASLGKEAEELQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-A 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1128 ALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEkaSLQKSISITSALLTEKDAELEKLR 1207
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELR 452
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 38044112 1208 NEVTVLRGEnasakslhsvVQTLESDK--VKLELKVKNLELQLKENKRQ 1254
Cdd:COG4717 453 EELAELEAE----------LEQLEEDGelAELLQELEELKAELRELAEE 491
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
993-1183 |
1.96e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 993 KHEEILQNLQKtLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQImEQMTKEKTETLASLEDTKQtnaK 1072
Cdd:PRK05771 44 RLRKLRSLLTK-LSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKI-EKEIKELEEEISELENEIK---E 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1073 LQNELDTLK-----------------------------------ENNLKNVEELNKSKE----LLTVENQKMEEFRKEIE 1113
Cdd:PRK05771 119 LEQEIERLEpwgnfdldlslllgfkyvsvfvgtvpedkleelklESDVENVEYISTDKGyvyvVVVVLKELSDEVEEELK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1114 -------------TLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADE 1180
Cdd:PRK05771 199 klgferleleeegTPSELIREIKEELEEIEKERESLLEELKELA------KKYLEELLALYEYLEIELERAEALSKFLKT 272
|
...
gi 38044112 1181 EKA 1183
Cdd:PRK05771 273 DKT 275
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
612-851 |
1.97e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 612 ELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALrAKLMKVIKEKENSLEAIRSKLDKAEDQ---HLVEMEDT--- 685
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENI-ARKQNKYDELVEEAKTIKAEIEELTDEllnLVMDIEDPsaa 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 686 LNKLQEAEIKVK-ELEVLQ--AKCNEQTKVIDNFTSQLKATEEKLldldalrkasSEGKSEMKKLRQQLEAAEKQIKHLE 762
Cdd:PHA02562 257 LNKLNTAAAKIKsKIEQFQkvIKMYEKGGVCPTCTQQISEGPDRI----------TKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 763 iEKNAESSKASSITRELQGrelKLTNLQENLS-EVSQVKEtLEKELQILKEKFAEASEEAVSVQRSMQETVNKL--HQKE 839
Cdd:PHA02562 327 -EIMDEFNEQSKKLLELKN---KISTNKQSLItLVDKAKK-VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKseLVKE 401
|
250
....*....|..
gi 38044112 840 EQFNMLSSDLEK 851
Cdd:PHA02562 402 KYHRGIVTDLLK 413
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
351-906 |
2.34e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 351 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHV-LELEAKMDQLRTMVEAADREKVelLN 429
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhAKKQQELQQRYAELCAAAITCT--AQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 430 QLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKsrimELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISsl 509
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-- 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 510 qeklevtrtdhqreiTSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSkLETAIASHQ 589
Cdd:TIGR00618 527 ---------------TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNR-SKEDIPNLQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 590 QAMEELKVSFSKGLGTETAEFAELKTQIEKMrldyQHEIENLQNQQDSERAAH--AKEMEALRAKLMKVIKEKEnSLEAI 667
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHALLRKL----QPEQDLQDVRLHLQQCSQelALKLTALHALQLTLTQERV-REHAL 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 668 RSKLDKAEdqhlvemedtlnKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMK-K 746
Cdd:TIGR00618 666 SIRVLPKE------------LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGsD 733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 747 LRQQLEAAEKQIKHLEiEKNAESSKASSITRELQGREL-----KLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEA 821
Cdd:TIGR00618 734 LAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVtaalqTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEI 812
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 822 VSVQRSMQETVNKLHQKEEQFNmlsSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKM 901
Cdd:TIGR00618 813 PSDEDILNLQCETLVQEEEQFL---SRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFD 889
|
....*
gi 38044112 902 NDELR 906
Cdd:TIGR00618 890 GDALI 894
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-667 |
2.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 332 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEA 408
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-----------NVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 409 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSekSRIMELEKDLALRVQEVAELRrrle 488
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE--ARLREIEQKLNRLTLEKEYLE---- 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 489 snkpagdvdmslSLLQEISSLQEKLEVTRTDHQREITSL---KEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH 565
Cdd:TIGR02169 833 ------------KEIQELQEQRIDLKEQIKSIEKEIENLngkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 566 ANKENSDV---IALWKSKLETAIASHQQAMEELK-VSFSKGLGTETAEFAELKTQIEKMRLDYQHEIE-----NLQNQQD 636
Cdd:TIGR02169 901 LERKIEELeaqIEKKRKRLSELKAKLEALEEELSeIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvNMLAIQE 980
|
330 340 350
....*....|....*....|....*....|.
gi 38044112 637 SERAahAKEMEALRAKLMKVIKEKENSLEAI 667
Cdd:TIGR02169 981 YEEV--LKRLDELKEKRAKLEEERKAILERI 1009
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
502-1040 |
3.63e-04 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 45.06 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 502 LLQEISSLQEKLEVTRTDHQREITSLKEHFGAR-EETHQKEIKALYTATEKLSKENESLKsKLEHANKENSDVIALWKSK 580
Cdd:COG5244 84 GLVCESKGMDKDGEIKQENHEDRIHFEESKIRRlEETIEALKSTEKEEIVELRRENEELD-KINLSLRERISSEEPELNK 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 581 LETAIASHQ--QAMEELKVsfskgLGTETAEFAELKTQIEKMRLDYQheienLQNQQDSERAAHAKEMEALRAKLMKVIK 658
Cdd:COG5244 163 DGSKLSYDElkEFVEESRV-----QVYDMVELVSDISETLNRNGSIQ-----RSSVRECERSNIHDVLFLVNGILDGVID 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 659 EKENSLEAIRSKLDKAEDQHLVEMED------TLNKLQEAEIKVKEL--EVLQAKCNEQTKVIDNFTSQlKATEEKLLDL 730
Cdd:COG5244 233 ELNGELERLRRQLVSLMSSHGIEVEEnsrlkaTLEKFQSLELKVNTLqeELYQNKLLKKFYQIYEPFAQ-AALSSQLQYL 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 731 DALRKASSEGKSEMKKLRQ--QLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLtNLQENLS-EVSQVKETLEKEL 807
Cdd:COG5244 312 AEVIESENFGKLENIEIHIilKVLSSISYALHIYTIKNTPDHLETTLQCFVNIAPISM-WLSEFLQrKFSSKQETAFSIC 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 808 QILKEKfaEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEA----KFREKDEREEQLIKAKEKLEND 883
Cdd:COG5244 391 QFLEDN--KDVTLILKILHPILETTVPKLLAFLRTNSNFNDNDTLCLIGSLYEIaridKLIGKEEISKQDNRLFLYPSCD 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 884 IAEIMKMS---GDNSSQLTKMNDELRLKERDVEEL---QLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKE 957
Cdd:COG5244 469 ITLSSILTilfSDKLEVFFQGIESLLENITIFPEQpsqQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLTEETKI 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 958 LERKLSDLEKKmeTSHNQCQELKARYERATSETKTKHEeilqNLQKTLLDTEDKLKGAREEN------SGLLQELEELRK 1031
Cdd:COG5244 549 KIIIGRDLERK--TLEENIKTLKVELNNKNNKLKEENF----NLVNRLKNMELKLYQIKDNNtlnkiyLDLVSEIMELRE 622
|
....*....
gi 38044112 1032 QADKAKAAQ 1040
Cdd:COG5244 623 TIRRQIKEQ 631
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
678-879 |
3.96e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.68 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 678 HLVEMEDTLNKLQeAEIKVKELEV---------LQAKCNEQTKVIDNFTSQLKATEEKLLDLD--------ALRKASSEG 740
Cdd:PRK11637 41 HASDNRDQLKSIQ-QDIAAKEKSVrqqqqqrasLLAQLKKQEEAISQASRKLRETQNTLNQLNkqidelnaSIAKLEQQQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 741 KSEMKKLRQQLEAAEKQIKH--LEIEKNAESSKASSitREL-------QGRELKLTNLQENLSEVSQVKETLE----KEL 807
Cdd:PRK11637 120 AAQERLLAAQLDAAFRQGEHtgLQLILSGEESQRGE--RILayfgylnQARQETIAELKQTREELAAQKAELEekqsQQK 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 808 QILKEKFAEAS--EEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKLRENL--ADMEAKFR-EKDEREEQLIKAKEK 879
Cdd:PRK11637 198 TLLYEQQAQQQklEQARNErKKTLTGLESSLQKDQQQLSELRANESRLRDSIarAEREAKARaEREAREAARVRDKQK 275
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1061-1308 |
4.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1061 ASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLaeel 1140
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL---- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1141 grsrdevtsHQKLEEERSVLNNQLLEMKKRES----KFIKDADEEKASLqKSISITSALLTEKDAELEKLRNEVTVLRge 1216
Cdd:COG4942 96 ---------RAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAV-RRLQYLKYLAPARREQAEELRADLAELA-- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1217 nASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDfLNSVIVDLQRKNQDLKM 1296
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE-LEALIARLEAEAAAAAE 241
|
250
....*....|..
gi 38044112 1297 KVEMMSEAALNG 1308
Cdd:COG4942 242 RTPAAGFAALKG 253
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
730-886 |
4.91e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 730 LDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKE-------- 801
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqkei 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 802 -TLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQfnmlssdlekLRENLADMEAKFREKDEREEQLIKAKEKL 880
Cdd:COG1579 99 eSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE----------LEEKKAELDEELAELEAELEELEAEREEL 168
|
....*.
gi 38044112 881 ENDIAE 886
Cdd:COG1579 169 AAKIPP 174
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1015-1280 |
5.91e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1015 AREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS 1094
Cdd:PRK11281 27 ARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1095 KElltvENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSrdeVTSHQKLEEERSVLNNQLLEMKKRESKF 1174
Cdd:PRK11281 107 KD----DNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL---VSLQTQPERAQAALYANSQRLQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1175 IKDADEEKA---SLQKSISITSALLtekDAELEKLRNEvtvLRGenasakslHSVVQTLESDKVKL-ELKVKNLELQLKE 1250
Cdd:PRK11281 180 KGGKVGGKAlrpSQRVLLQAEQALL---NAQNDLQRKS---LEG--------NTQLQDLLQKQRDYlTARIQRLEHQLQL 245
|
250 260 270
....*....|....*....|....*....|....*
gi 38044112 1251 -----NKRQLSSSSgNTDTQADEDERAQESQIDFL 1280
Cdd:PRK11281 246 lqeaiNSKRLTLSE-KTVQEAQSQDEAARIQANPL 279
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
603-818 |
6.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 603 LGTETAEFAELKTQIEKMRLDYQHEIENLQ---NQQDSERAAHAKEMEALRAKLMKV---IKEKENSLEAIRSKLDKAED 676
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALarrIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 677 QhLVEMEDTLNKLQEAeikVKELEVLQAKCNEQTKV------------------IDNFTSQLKATEEKL-LDLDALRKAS 737
Cdd:COG4942 91 E-IAELRAELEAQKEE---LAELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELrADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 738 SEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEA 817
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 38044112 818 S 818
Cdd:COG4942 247 G 247
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
801-919 |
6.37e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 801 ETLEKELQILKEKfaEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER----EEQLIKA 876
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 38044112 877 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERDVEELQLKL 919
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
375-1018 |
6.63e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 375 RAEVAKATSHVGEIEQELALARDGHDQHvlelEAKMDQLRTMV-----EAADREKVELLNQLEEEKRKVEDLQFRveees 449
Cdd:PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQF----EQAYQLVRKIAgevsrSEAWDVARELLRRLREQRHLAEQLQQL----- 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 450 itkgdlevatvseKSRIMELEKDLALRvQEVAELRRRLESNKPAGdvdmsLSLLQEISSLQEKLEVTRTDHQREITSLKE 529
Cdd:PRK04863 519 -------------RMRLSELEQRLRQQ-QRAERLLAEFCKRLGKN-----LDDEDELEQLQEELEARLESLSESVSEARE 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 530 HFgAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDvialwkskletAIASHQQAMEelkvsFSKGLGTETAE 609
Cdd:PRK04863 580 RR-MALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGE-----------EFEDSQDVTE-----YMQQLLERERE 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 610 FAELKTQIEKMRLDYQHEIENLQNQQDSERA-----------------------AHAKEMEALRAKLMKVIkeKENSLEA 666
Cdd:PRK04863 643 LTVERDELAARKQALDEEIERLSQPGGSEDPrlnalaerfggvllseiyddvslEDAPYFSALYGPARHAI--VVPDLSD 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 667 IRSKLDKAED--QHLVEMEDTLNKLQEAEIKVKELE--VLQAKCNEQTKVidnftSQL--------KATEEKLLDLDALR 734
Cdd:PRK04863 721 AAEQLAGLEDcpEDLYLIEGDPDSFDDSVFSVEELEkaVVVKIADRQWRY-----SRFpevplfgrAAREKRIEQLRAER 795
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 735 KASSEG-------KSEMKKLRQQ--------------------LEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLT 787
Cdd:PRK04863 796 EELAERyatlsfdVQKLQRLHQAfsrfigshlavafeadpeaeLRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 788 NLQENLSEVSQVK-ETLEKELQILKEKFAEASEEAVSVQR------SMQETVNKLHQKEEQFNMLSSDLEKLRENLADME 860
Cdd:PRK04863 876 ALNRLLPRLNLLAdETLADRVEEIREQLDEAEEAKRFVQQhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAK 955
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 861 AKFR---EKDEREEQLikAKEKLENDIAEimkmSGDNSSQLTKmndELRLKERDVEELQLKLT----KANENASFLQKSI 933
Cdd:PRK04863 956 QQAFaltEVVQRRAHF--SYEDAAEMLAK----NSDLNEKLRQ---RLEQAEQERTRAREQLRqaqaQLAQYNQVLASLK 1026
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 934 EDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQcqeLKARYERATS--ETKTKHEEILQNLQKTLLDTEDK 1011
Cdd:PRK04863 1027 SSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHAR---LSANRSRRNQleKQLTFCEAEMDNLTKKLRKLERD 1103
|
....*..
gi 38044112 1012 LKGAREE 1018
Cdd:PRK04863 1104 YHEMREQ 1110
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
750-945 |
6.72e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 750 QLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQ 829
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 830 ET-------------------------VNKLHQKE-EQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 883
Cdd:COG3883 97 RSggsvsyldvllgsesfsdfldrlsaLSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 884 IAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 945
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
749-1301 |
7.75e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 7.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 QQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVsvqrSM 828
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYN----NL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 829 QETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKE--------------KLENDIAEIMKMSGDN 894
Cdd:PRK01156 238 KSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpvyknrnyindyfKYKNDIENKKQILSNI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 895 SSQLTKMNDELRlKERDVEELQLKLTKANENASFLQKSIEDMtvkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHN 974
Cdd:PRK01156 318 DAEINKYHAIIK-KLSVLQKDYNDYIKKKSRYDDLNNQILEL-----EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 975 QCQELKARYERATSETKTKHEEILQNLQktllDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTA---------EDA 1045
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKELNEINVKLQ----DISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1046 MQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKennlKNVEELNKSK-ELLTVENQKMEEFRKEIETLKQAAAQ-KS 1123
Cdd:PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK----KRKEYLESEEiNKSINEYNKIESARADLEDIKIKINElKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1124 QQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRE-SKFIKDADEEKASLQKSI----SITSALLTE 1198
Cdd:PRK01156 544 KHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEiKKQLNDLESRLQEIEIGFpddkSYIDKSIRE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1199 KDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL---ELKVKNLELQLKENKRQLSSSSGNTDtQADEDERAQES 1275
Cdd:PRK01156 624 IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNLKKSRKALD-DAKANRARLES 702
|
570 580
....*....|....*....|....*.
gi 38044112 1276 QIDFLNSVIVDLQRKNQDLKMKVEMM 1301
Cdd:PRK01156 703 TIEILRTRINELSDRINDINETLESM 728
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
387-812 |
7.95e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 7.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 387 EIEQELALARDGHDQHvLELEAKMDQL---RTMVEAADREKVELLNQLEEEKRKVEDLQFRVE----EESITKGDLEVAT 459
Cdd:PRK01156 326 AIIKKLSVLQKDYNDY-IKKKSRYDDLnnqILELEGYEMDYNSYLKSIESLKKKIEEYSKNIErmsaFISEILKIQEIDP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 460 VSEKSRIMELEKDLALRVQEVAELRRRLESNKpagDVDMSLSLLQEISSLQEKLEVTRTDHQRE-ITSLKEHFGAREETH 538
Cdd:PRK01156 405 DAIKKELNEINVKLQDISSKVSSLNQRIRALR---ENLDELSRNMEMLNGQSVCPVCGTTLGEEkSNHIINHYNEKKSRL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 539 QKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIAShqqaMEELKVSFSKgLGTETAEFAELKTQIE 618
Cdd:PRK01156 482 EEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARAD----LEDIKIKINE-LKDKHDKYEEIKNRYK 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 619 KMRLdyqheiENLQNQQDSERAAHAK----EMEALRAK---LMKVIKEKENSLEAIRSKLDKAE---DQHLVEMEDTLNK 688
Cdd:PRK01156 557 SLKL------EDLDSKRTSWLNALAVisliDIETNRSRsneIKKQLNDLESRLQEIEIGFPDDKsyiDKSIREIENEANN 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 689 LQEaeiKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAekqikhleiekNAE 768
Cdd:PRK01156 631 LNN---KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDA-----------KAN 696
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 38044112 769 SSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKE 812
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
963-1149 |
8.34e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 963 SDLEKKMETSHNQCQELKARYERATSETKTKHEEIlQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADK------A 1036
Cdd:COG3883 33 EAAQAELDALQAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1037 KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLtveNQKMEEFRKEIETLK 1116
Cdd:COG3883 112 ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLS 188
|
170 180 190
....*....|....*....|....*....|...
gi 38044112 1117 QAAAQKSQQLSALQEENVKLAEELGRSRDEVTS 1149
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
657-861 |
8.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 657 IKEKENSLEAIRSKLDKAEDQhlvemedtLNKLQEAEIKV-KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRK 735
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKE--------LAALKKEEKALlKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 736 ASSEGKSEMKK-LRQQLEAAEK--QIKHLEIEKNAESSKASSITREL-----QGRELKLTNLQENLSEVSQVKETLE--- 804
Cdd:COG4942 94 ELRAELEAQKEeLAELLRALYRlgRQPPLALLLSPEDFLDAVRRLQYlkylaPARREQAEELRADLAELAALRAELEaer 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38044112 805 --------------KELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEA 861
Cdd:COG4942 174 aeleallaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
477-855 |
9.55e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 477 VQEVAELRRRLESNKP--AGDVDMSLSLLQEI---SSLQE---KLEVTRTDHQ-----REITSLKEHFGAREETHQKeik 543
Cdd:TIGR01612 1364 IDEVKEYTKEIEENNKniKDELDKSEKLIKKIkddINLEEcksKIESTLDDKDideciKKIKELKNHILSEESNIDT--- 1440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 544 alYTATEKLSKENESLKSK-LEHANKENSDVIalwKSKLETAIASHQQAMEELKVSFSKGLGTETaEFAELKTQIEKMRL 622
Cdd:TIGR01612 1441 --YFKNADENNENVLLLFKnIEMADNKSQHIL---KIKKDNATNDHDFNINELKEHIDKSKGCKD-EADKNAKAIEKNKE 1514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 623 ---DYQHEIENLQNQQDSeraahakemealrAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKEL 699
Cdd:TIGR01612 1515 lfeQYKKDVTELLNKYSA-------------LAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRI 1581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 700 EVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKA-----SS 774
Cdd:TIGR01612 1582 EDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSlqeflES 1661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 775 ITRELQGRELKLTNLQENLSEVSQVKETLEKE--------LQILKEKFAEASEEAVSVQRSMQETVNKLhqkEEQFNmlS 846
Cdd:TIGR01612 1662 LKDQKKNIEDKKKELDELDSEIEKIEIDVDQHkknyeigiIEKIKEIAIANKEEIESIKELIEPTIENL---ISSFN--T 1736
|
....*....
gi 38044112 847 SDLEKLREN 855
Cdd:TIGR01612 1737 NDLEGIDPN 1745
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
925-1304 |
1.04e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 925 NASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT 1004
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1005 LLDTEDKLKGAREENSGLLQE----LEELRK--QADKAKAAQTAEDAMQIMEQMTKE---KTETLASLEDTKQTNAKLQN 1075
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdakkAEAARKaeEVRKAEELRKAEDARKAEAARKAEeerKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1076 ELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQE----------ENVKLAEELGRSRD 1145
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaEEKKKADEAKKKAE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1146 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSAllTEKDAELEKLRNEVTVLRGENASAKSlHS 1225
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKA-EE 1389
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 1226 VVQTLESDKVKLELKVKNLELQLKENKRQlssSSGNTDTQADEDERAQESQIDflnsviVDLQRKNQDLKMKVEMMSEA 1304
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKK---KADEAKKKAEEKKKADEAKKK------AEEAKKADEAKKKAEEAKKA 1459
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
618-824 |
1.13e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 618 EKMRLDYQHEIENlqnqqDSERAAHAKEMEALRAklmkvIKEKENSLEAirskldKAEDQHLVEM-----------EDTL 686
Cdd:COG2433 319 EKLHLAREYGYDN-----DHERDALAAALKAYDA-----YKNKFERVEK------KVPPDVDRDEvkarvirglsiEEAL 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 687 NKLQEAEIKVKELEVLQAKCNEQTkvidnftsQLKATEEKLLDLDALRKassEGKSEMKKLRQQLEAAEKQIKHLEIEKN 766
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEER--------ELTEEEEEIRRLEEQVE---RLEAEVEELEAELEEKDERIERLERELS 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 767 AESSKASS---ITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKE-KFAEASEEAVSV 824
Cdd:COG2433 452 EARSEERReirKDREISRLDREIERLERELEEERERIEELKRKLERLKElWKLEHSGELVPV 513
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
608-945 |
1.18e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 43.30 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 608 AEFAELKTQIEKMRLdyqhEIENLQNQQDSERaahaKEMEALRAKLMKVIKEKENSLEAIRSKLDKA----EDQHLVEME 683
Cdd:pfam06160 107 EELDELLESEEKNRE----EVEELKDKYRELR----KTLLANRFSYGPAIDELEKQLAEIEEEFSQFeeltESGDYLEAR 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 684 DTLNKLQEA----EIKVKELEVLQAKCneQTKVIDNFTsQLKATEEKLLDLD-ALRKASSEgkSEMKKLRQQLEAAEKQI 758
Cdd:pfam06160 179 EVLEKLEEEtdalEELMEDIPPLYEEL--KTELPDQLE-ELKEGYREMEEEGyALEHLNVD--KEIQQLEEQLEENLALL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 759 KHLEIEKNAESSKA---------SSITRELQGR---ELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ- 825
Cdd:pfam06160 254 ENLELDEAEEALEEieeridqlyDLLEKEVDAKkyvEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENELERVRg 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 826 ---------RSMQETVNKLHQKEEQFNMLSSDLEKLRENLADME---AKFRE------KDERE--EQLIKAKEKLENDI- 884
Cdd:pfam06160 334 lekqleeleKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEeeqEEFKEslqslrKDELEarEKLDEFKLELREIKr 413
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 885 -----------AEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 945
Cdd:pfam06160 414 lveksnlpglpESYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDDVDTLYEKTEELIDNATLAEQ 485
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
351-708 |
1.22e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 351 TALQEALKEKQQHIEQLLAERDleraevaKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQ 430
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQE-------AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 431 LEEEKRKVEDLqfrveeeSITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPagDVDMSLSLLQEI---- 506
Cdd:pfam07888 103 YKELSASSEEL-------SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKE--RAKKAGAQRKEEeaer 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 507 SSLQEKLEVTRTDHQR---EITSLKEHFGAREETHQKEIKALYTATEKLSK------ENESLKSKL----EHANKENSDV 573
Cdd:pfam07888 174 KQLQAKLQQTEEELRSlskEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELrslqERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 574 IALwKSKLETAIASHQQAMEELKVSFSKgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRaKL 653
Cdd:pfam07888 254 EGL-GEELSSMAAQRDRTQAELHQARLQ-AAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQ-RL 330
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 654 MKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQE--AEIKV--KELEVLQAKCNE 708
Cdd:pfam07888 331 EERLQEERMEREKLEVELGREKDCNRVQLSESRRELQElkASLRVaqKEKEQLQAEKQE 389
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
674-943 |
1.26e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 43.14 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 674 AEDQHLvemEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLdALRKASSEgkSEMKK---LRQQ 750
Cdd:pfam05622 111 EEAQAL---KDEMDILRESSDKVKKLEATVETYKKKLEDLGDLRRQVKLLEERNAEY-MQRTLQLE--EELKKanaLRGQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 751 LEAAEKQIKHLEIEKNAESSKASSITRELQgrelkltNLQENLSEVSQVKETLEKELQILKE-----KFAEASEEAVSVQ 825
Cdd:pfam05622 185 LETYKRQVQELHGKLSEESKKADKLEFEYK-------KLEEKLEALQKEKERLIIERDTLREtneelRCAQLQQAELSQA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 826 RSMQ-----------------ETVNKLHQKEEQFNMLS-----SDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 883
Cdd:pfam05622 258 DALLspssdpgdnlaaeimpaEIREKLIRLQHENKMLRlgqegSYRERLTELQQLLEDANRRKNELETQNRLANQRILEL 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 884 IAEIMKMSGDNSSQLTKMNDELRLKeRDVEELQLKLTKANENASFLQKSIEDMTVKAEQS 943
Cdd:pfam05622 338 QQQVEELQKALQEQGSKAEDSSLLK-QKLEEHLEKLHEAQSELQKKKEQIEELEPKQDSN 396
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
964-1126 |
1.28e-03 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 43.01 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 964 DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGllQELEELRKQAdKAKAAQTAE 1043
Cdd:COG4487 37 ERLADAAKREAALELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKKALAVAEEKE--KELAALQEAL-AEKDAKLAE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1044 DAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEN-NLKNVEELNKSKELLTVENQK-MEEFRKEIETLKQAAAQ 1121
Cdd:COG4487 114 LQAKELELLKKERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQ 193
|
....*
gi 38044112 1122 KSQQL 1126
Cdd:COG4487 194 GSTQL 198
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
684-856 |
1.36e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 684 DTLNKLQEAEIKVKELEV----LQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKassEGKSEMKKLRQQLEAAEKQIK 759
Cdd:COG1579 7 RALLDLQELDSELDRLEHrlkeLPAELAELEDELAALEARLEAAKTELEDLEKEIK---RLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 760 hleiekNAESSK-ASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQK 838
Cdd:COG1579 84 ------NVRNNKeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE 157
|
170
....*....|....*...
gi 38044112 839 EEQfnmLSSDLEKLRENL 856
Cdd:COG1579 158 LEE---LEAEREELAAKI 172
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1071-1216 |
1.45e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1071 AKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD--EVT 1148
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38044112 1149 SHQK----LEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE 1216
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
664-761 |
2.34e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 41.98 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 664 LEAIRSKLDK-AEDQHLVEMEDTLNKLQEAEIKVKEL----EVLQAKCNEQTKVIdnftSQLKATEEkllDLDALRKASS 738
Cdd:PRK05431 4 IKLIRENPEAvKEALAKRGFPLDVDELLELDEERRELqtelEELQAERNALSKEI----GQAKRKGE---DAEALIAEVK 76
|
90 100
....*....|....*....|...
gi 38044112 739 EGKSEMKKLRQQLEAAEKQIKHL 761
Cdd:PRK05431 77 ELKEEIKALEAELDELEAELEEL 99
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
717-1116 |
2.37e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.13 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 717 TSQLKATEEKLLDL-DALRKAS-SEGKSEMKKLRQQLEAAEKQIKHLE------IEKNAESSKASSITRELQgRELKLTN 788
Cdd:PRK04778 78 TNSLPDIEEQLFEAeELNDKFRfRKAKHEINEIESLLDLIEEDIEQILeelqelLESEEKNREEVEQLKDLY-RELRKSL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 789 LQENLSeVSQVKETLEKELQILKEKFAEASE--------EAVSVQRSMQETVNKLHQKEEQFNMLSSDLEK-LRENLADM 859
Cdd:PRK04778 157 LANRFS-FGPALDELEKQLENLEEEFSQFVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLKELQTeLPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 860 EAKFREkdereeqLIKAKEKLENDIAEimkmsgdnsSQLTKMNDELRLKERDVEElqLKLTKANENASFLQKSIEDM--- 936
Cdd:PRK04778 236 KAGYRE-------LVEEGYHLDHLDIE---------KEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLydi 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 937 ---TVKAEQsqqeaakkheeekkelerklsDLEKKMETshnqcqeLKARYERATSETKTKHEEILQnLQKTLLDTEDKLK 1013
Cdd:PRK04778 298 lerEVKARK---------------------YVEKNSDT-------LPDFLEHAKEQNKELKEEIDR-VKQSYTLNESELE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1014 GAREensgLLQELEELRKQADKAKAAQTAEDAM--QIMEQMtkekTETLASLEDTKQTNAKLQNELDTLKEnnlknvEEL 1091
Cdd:PRK04778 349 SVRQ----LEKQLESLEKQYDEITERIAEQEIAysELQEEL----EEILKQLEEIEKEQEKLSEMLQGLRK------DEL 414
|
410 420
....*....|....*....|....*
gi 38044112 1092 nkskelltVENQKMEEFRKEIETLK 1116
Cdd:PRK04778 415 --------EAREKLERYRNKLHEIK 431
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
629-936 |
2.72e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 629 ENLQNQQDSERAAHAKEMEALRAKLMKVIKEKEN-SLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCN 707
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKIN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 708 eqtkvidnftsqlkATEEKLLDLDALRKASSEGKSEMKKLRQQLeaaEKQIKHLEIEKNAESSKASSITRELQgrELKLT 787
Cdd:PLN02939 174 --------------ILEMRLSETDARIKLAAQEKIHVEILEEQL---EKLRNELLIRGATEGLCVHSLSKELD--VLKEE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 788 N---------LQENLSEVSQVKE---TLEKELQILKEKFAEASEEAVSVQRSMQET----VNKLHQKEEQFNMLSSDLEK 851
Cdd:PLN02939 235 NmllkddiqfLKAELIEVAETEErvfKLEKERSLLDASLRELESKFIVAQEDVSKLsplqYDCWWEKVENLQDLLDRATN 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 852 LRENLA---DMEAKFREK-DEREEQLIKAK-EKLENDIAEIM--KMSG-----DNSSQltKMNDELRLKERDVEELQLKL 919
Cdd:PLN02939 315 QVEKAAlvlDQNQDLRDKvDKLEASLKEANvSKFSSYKVELLqqKLKLleerlQASDH--EIHSYIQLYQESIKEFQDTL 392
|
330
....*....|....*....
gi 38044112 920 TKANENAS--FLQKSIEDM 936
Cdd:PLN02939 393 SKLKEESKkrSLEHPADDM 411
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
663-945 |
2.78e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 663 SLEAIRSKLDKAEDQhlvemedtlnKLQEAEIKVkelevlqakcneqtkvidnftsqLKATEEKLLDLDALRKASsegKS 742
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKL-----------------------VQQDLEQTLALLDKIDRQ---KE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 743 EMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRElQGRELKLTNLQENLSEVSQvketlekELQILKEKFAEASEEAV 822
Cdd:PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 823 SVQ----RSMQETVNKLHQKEEQFNMLSSDleklRENLADMEAKFREKDEREEQLIKAKEKLEndiaeimKMSGDNSSQL 898
Cdd:PRK11281 153 SLQtqpeRAQAALYANSQRLQQIRNLLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQL 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 38044112 899 TkmndELRLKERDveELQLKLTKANENASFLQKSIED-------MTVKAEQSQQ 945
Cdd:PRK11281 222 Q----DLLQKQRD--YLTARIQRLEHQLQLLQEAINSkrltlseKTVQEAQSQD 269
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
681-921 |
2.91e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 681 EMEDTLNKLQEAEIkvkeLEVLQAKCNEQTKVIDNFTSQLKATEEKLldlDALRKASSEGKSEMK-KLRQQLEAAEKQIK 759
Cdd:PRK05771 17 YKDEVLEALHELGV----VHIEDLKEELSNERLRKLRSLLTKLSEAL---DKLRSYLPKLNPLREeKKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 760 HLEIEknaesskASSITRELQGRELKLTNLQENLSEVSQVKETLEK------ELQILKEK------FAEASEEAVSVQRS 827
Cdd:PRK05771 90 DVEEE-------LEKIEKEIKELEEEISELENEIKELEQEIERLEPwgnfdlDLSLLLGFkyvsvfVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 828 MQETVNKLHQKEEQ------FNMLSSDLEKLRENLADMEAK-------------FREKDEREEQLIKAKEKLENDIAEIM 888
Cdd:PRK05771 163 ESDVENVEYISTDKgyvyvvVVVLKELSDEVEEELKKLGFErleleeegtpselIREIKEELEEIEKERESLLEELKELA 242
|
250 260 270
....*....|....*....|....*....|...
gi 38044112 889 KMSGDNSSQLtkmnDELRLKERDVEELQLKLTK 921
Cdd:PRK05771 243 KKYLEELLAL----YEYLEIELERAEALSKFLK 271
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
829-1040 |
3.13e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 829 QETVNKL------HQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLikakeKLENDIAEIMKMSGDNSSQLTKMN 902
Cdd:COG3206 151 AAVANALaeayleQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 903 DELRlkerdveELQLKLTKANENASFLQKSIE-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKA 981
Cdd:COG3206 226 SQLA-------EARAELAEAEARLAALRAQLGsGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRA 298
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 982 RYERATsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQ 1040
Cdd:COG3206 299 QIAALR-------AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1023-1230 |
3.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1023 LQELEELRKQADKAKAAQTAedamqiMEQMTKEKTETLASLEDTKQTNAKLQNELDTLK--ENNLKNVEELNKSKELLTV 1100
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE------YAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1101 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELgrsrdEVTSHQKLEEersvlnnqllemkkreskfIKDADE 1180
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELL-----EQLSLATEEE-------------------LQDLAE 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 38044112 1181 EKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTL 1230
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
749-910 |
3.55e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 749 QQLEAAEKQIKHLEIEKNAesskassITREL-QGRELKLTNLQENLSEvsqvketLEKELQILKEKFAEASEEAVSVQRS 827
Cdd:COG0542 411 EELDELERRLEQLEIEKEA-------LKKEQdEASFERLAELRDELAE-------LEEELEALKARWEAEKELIEEIQEL 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 828 MQEtvnkLHQKEEQFNMLSSDLEKLRENLADMEAKFREK-DereeqlikakeklENDIAEIM---------KMSGDNSSQ 897
Cdd:COG0542 477 KEE----LEQRYGKIPELEKELAELEEELAELAPLLREEvT-------------EEDIAEVVsrwtgipvgKLLEGEREK 539
|
170
....*....|...
gi 38044112 898 LTKMNDElrLKER 910
Cdd:COG0542 540 LLNLEEE--LHER 550
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
778-1242 |
4.03e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.74 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 778 ELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFaeaseeavsvqrsmqetvNKLHQKEEQFNMLSSDLEKLRENLA 857
Cdd:PTZ00440 485 SKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNF------------------KNIEDYYITIEGLKNEIEGLIELIK 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 858 DMEAKFREKDEREeqliKAKEKLENDIAEIMKMSGDNSSQLTKM---NDELRLKERDVEELqLKLTKANENASFLQKSIE 934
Cdd:PTZ00440 547 YYLQSIETLIKDE----KLKRSMKNDIKNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL-INEALFNKEKFINEKNDL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 935 DMTVKaeqsqqeaakkheeeKKELERKLSDLEKKMETSHNQCQELKARYERATSETKtkheeiLQNLQKTLLDTEDKLKG 1014
Cdd:PTZ00440 622 QEKVK---------------YILNKFYKGDLQELLDELSHFLDDHKYLYHEAKSKED------LQTLLNTSKNEYEKLEF 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1015 AREEN--------SGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLK 1086
Cdd:PTZ00440 681 MKSDNidniiknlKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNE 760
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1087 NVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLE 1166
Cdd:PTZ00440 761 FILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQ 840
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38044112 1167 MKKRESKFIKDADEEKaSLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESdkvKLELKVK 1242
Cdd:PTZ00440 841 KFPTEDENLNLKELEK-EFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSNSNKQLVEHLLNN---KIDLKNK 912
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
552-806 |
4.13e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 552 LSKENESLKSKLEHANkENSDVIALWKSKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIENL 631
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQR----KKNGENIARKQNKYDELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 632 QNQQdseraahakemealrAKLMKVIKEKENSLEAIRSKLDKAEDQHlvemeDTLNKL--------------QEAEIKVK 697
Cdd:PHA02562 240 TDEL---------------LNLVMDIEDPSAALNKLNTAAAKIKSKI-----EQFQKVikmyekggvcptctQQISEGPD 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 698 ELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknAESSKASSitr 777
Cdd:PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK----AAIEELQA--- 372
|
250 260
....*....|....*....|....*....
gi 38044112 778 ELQGRELKLTNLQENLSEVSQVKETLEKE 806
Cdd:PHA02562 373 EFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
680-884 |
4.23e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.55 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 680 VEMEDTLNKLQEAEIKV--KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQ 757
Cdd:pfam05667 323 VETEEELQQQREEELEElqEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDAEEN 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 758 IKHLEIEKNAESSKassitrelqgrelkltnLQENLSEVSQVKETLEKELQILKEKFAEASEEAvsvQRSMQEtvnklhq 837
Cdd:pfam05667 403 IAKLQALVDASAQR-----------------LVELAGQWEKHRVPLIEEYRALKEAKSNKEDES---QRKLEE------- 455
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 38044112 838 keeqfnmlssdLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDI 884
Cdd:pfam05667 456 -----------IKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
721-934 |
4.33e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 721 KATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVK 800
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 801 ETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREeqLIKAKEKL 880
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE--AEQALDEL 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 38044112 881 ENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIE 934
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDAL 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
721-1292 |
4.62e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 721 KATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSIT-RELQGRELKLTNLQENLSEVSQV 799
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYlDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 800 KETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEK 879
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 880 LENDIAEIMKmsgdnssQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTvkAEQSQQEAAKKHEEEKKELE 959
Cdd:pfam02463 333 EKEEIEELEK-------ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES--ERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 960 RKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENsgllqeLEELRKQADKAKAA 1039
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD------ELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1040 QTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAA 1119
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1120 AQKSQQLSALQEENV------KLAEELGRSRDEVTSHQKLEEERSVLNNQLLemKKRESKFIKDADEEKASLQKSISITS 1193
Cdd:pfam02463 558 DEVEERQKLVRALTElplgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLD--KATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1194 ALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKN-LELQLKENKRQLSSSSGNTDTQADEDERA 1272
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAeSELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580
....*....|....*....|
gi 38044112 1273 QESQIDFLNSVIVDLQRKNQ 1292
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKIN 735
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
370-1224 |
4.89e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 370 ERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVE-LLNQLEEEKRKVEDLQFRVEEE 448
Cdd:TIGR01612 1305 EKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIKkIIDEVKEYTKEIEENNKNIKDE 1384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 449 sITKGDLEVATVSEKSRIMELE---------KDLALRVQEVAELRRRL---ESN-----KPAGDVDMSLSLL-------- 503
Cdd:TIGR01612 1385 -LDKSEKLIKKIKDDINLEECKskiestlddKDIDECIKKIKELKNHIlseESNidtyfKNADENNENVLLLfkniemad 1463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 504 ---QEIssLQEKLEVTRTDHQREITSLKEHfgareethQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALW--- 577
Cdd:TIGR01612 1464 nksQHI--LKIKKDNATNDHDFNINELKEH--------IDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYsal 1533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 578 --KSKLETAIASHQQAMEELKVSFSK-GLGTETAEFAELKTQIEKMRLDyqheiENLQNQQDSERAAHAKE--MEALRAK 652
Cdd:TIGR01612 1534 aiKNKFAKTKKDSEIIIKEIKDAHKKfILEAEKSEQKIKEIKKEKFRIE-----DDAAKNDKSNKAAIDIQlsLENFENK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 653 LMKV--IKEKEN----SLEAIRSKLDK----AEDQHLVEMEDTLNKLQEAeikVKELEVLQAKCNEQTKVIDNFTSQLKA 722
Cdd:TIGR01612 1609 FLKIsdIKKKINdclkETESIEKKISSfsidSQDTELKENGDNLNSLQEF---LESLKDQKKNIEDKKKELDELDSEIEK 1685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 723 TEeklLDLDALRKASSEGKSEmkKLRQQLEAAEKQIKHLE--IEKNAESSKASSITRELQGRELKlTNLQENLSEVSQVK 800
Cdd:TIGR01612 1686 IE---IDVDQHKKNYEIGIIE--KIKEIAIANKEEIESIKelIEPTIENLISSFNTNDLEGIDPN-EKLEEYNTEIGDIY 1759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 801 ETLEKELQILKEKFAEASEEAVSVQR------SMQETVNKLHQKEEQFNMLSSDLE---------KLRENLADMEAKFRE 865
Cdd:TIGR01612 1760 EEFIELYNIIAGCLETVSKEPITYDEikntriNAQNEFLKIIEIEKKSKSYLDDIEakefdriinHFKKKLDHVNDKFTK 1839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 866 K----DEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMN----------DELRLKERDVEELQLKLTKANENAS---- 927
Cdd:TIGR01612 1840 EyskiNEGFDDISKSIENVKNSTDENLLFDILNKTKDAYAGiigkkyysykDEAEKIFINISKLANSINIQIQNNSgidl 1919
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 928 ----------FLQKSIEDmTVKAEQSQQEAAKKHEEEKKELE------RKLSDLEKKMETSHNQCQELKARYER------ 985
Cdd:TIGR01612 1920 fdniniailsSLDSEKED-TLKFIPSPEKEPEIYTKIRDSYDtlldifKKSQDLHKKEQDTLNIIFENQQLYEKiqasne 1998
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 986 ---ATSETKTKHEEILQNLqKTLLDTEDKLK--GAREENSGLLQELEELRKQADKAKAAQTAEDAM------QIMEQMTK 1054
Cdd:TIGR01612 1999 lkdTLSDLKYKKEKILNDV-KLLLHKFDELNklSCDSQNYDTILELSKQDKIKEKIDNYEKEKEKFgidfdvKAMEEKFD 2077
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1055 EKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKME--------------EFRKE--------- 1111
Cdd:TIGR01612 2078 NDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSKKKLKELTEAFNTEIKIIEdkiiekndlidkliEMRKEcllfsyatl 2157
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1112 IETLKQAAAQKSQQLSALqeenVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASlqksisi 1191
Cdd:TIGR01612 2158 VETLKSKVINHSEFITSA----AKFSKDFFEFIEDISDSLNDDIDALQIKYNLNQTKKHMISILADATKDHNN------- 2226
|
970 980 990
....*....|....*....|....*....|....*.
gi 38044112 1192 tsalLTEKDAELEKLRNEVTVL---RGENASAKSLH 1224
Cdd:TIGR01612 2227 ----LIEKEKEATKIINNLTELftiDFNNADADILH 2258
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
846-1120 |
5.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 846 SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 925
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 926 ASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEkkmetshnqcqelkaryeratsetktkheeILQNLQKTL 1005
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------------------------YLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1006 LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEdamqimeqmtkektetLASLEDTKQTNAKLQNELDTLKENNL 1085
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEE----------------RAALEALKAERQKLLARLEKELAELA 212
|
250 260 270
....*....|....*....|....*....|....*
gi 38044112 1086 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAA 1120
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1091-1294 |
5.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1091 LNKSKELLTVENQKMEEF-RKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRSRDEVTShqkLEEERSVLNNQLLEM 1167
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1168 KKRESKFIKDADEEKASLqkSISITSALLTEKDAELEKLRNEVTVLRgenASAKSLHSVVQTLESdkvklelKVKNLELQ 1247
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHPDVIALRA-------QIAALRAQ 306
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 38044112 1248 LKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDL 1294
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
490-910 |
5.24e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 490 NKPAGDVDMSLSLLQEISSLQEKLEVTRTDH---QREITSLKEHFGAREETHQ---------KEIKALYTATEKLSKENE 557
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLvemARELAELNEAESDLEQDYQaasdhlnlvQTALRQQEKIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 558 SLKSKLEhankENSDVIALWKSKLETAIASHQQAMEELKvsfskglgtetaefaELKTQI----------EKMRLDYQHE 627
Cdd:PRK04863 359 ELEERLE----EQNEVVEEADEQQEENEARAEAAEEEVD---------------ELKSQLadyqqaldvqQTRAIQYQQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 628 IENLQ-----NQQDSERAAHAKEM-EALRAKLmKVIKEKENSLEAIRSKLDKAEDQHLVEMEdTLNKLqeaeikVKELEV 701
Cdd:PRK04863 420 VQALErakqlCGLPDLTADNAEDWlEEFQAKE-QEATEELLSLEQKLSVAQAAHSQFEQAYQ-LVRKI------AGEVSR 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 702 LQAKcneqtkviDNFTSQLK-ATEEKLLD--LDALRKasseGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRE 778
Cdd:PRK04863 492 SEAW--------DVARELLRrLREQRHLAeqLQQLRM----RLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 779 LQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAvSVQRSMQETVNKL--HQKEEQFNmlSSDLEKLRENL 856
Cdd:PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA-PAWLAAQDALARLreQSGEEFED--SQDVTEYMQQL 636
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 38044112 857 ADMEAKFR-EKDEREEQlikaKEKLEndiAEIMKMSGDNSSQLTKMNdelRLKER 910
Cdd:PRK04863 637 LERERELTvERDELAAR----KQALD---EEIERLSQPGGSEDPRLN---ALAER 681
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
995-1166 |
6.55e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 995 EEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAkaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNAkLQ 1074
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL------ELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1075 NELDTLKennlKNVEELNksKELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTshQKLE 1154
Cdd:COG1579 96 KEIESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE--AERE 166
|
170
....*....|..
gi 38044112 1155 EERSVLNNQLLE 1166
Cdd:COG1579 167 ELAAKIPPELLA 178
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
712-882 |
6.96e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 712 VIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKH-LEIE-----KNAESSkASSITRELQGRElK 785
Cdd:PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEeAEKEaqqaiKEAKKE-ADEIIKELRQLQ-K 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 786 LTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ-------RSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD 858
Cdd:PRK00409 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKvgdevkyLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSD 678
|
170 180
....*....|....*....|....
gi 38044112 859 MEAKFREKDEREEQLIKAKEKLEN 882
Cdd:PRK00409 679 LEKIQKPKKKKKKKPKTVKPKPRT 702
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
352-490 |
7.43e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEakMDQLRTMVEAADREKVELLNQL 431
Cdd:COG1579 42 ALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE--IESLKRRISDLEDEILELMERI 119
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 38044112 432 EEEKRKVEDLQFRVEEEsitKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESN 490
Cdd:COG1579 120 EELEEELAELEAELAEL---EAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
463-694 |
7.45e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 7.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 463 KSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMslsLLQEISSLQEKLEVTRTDHQreitslkehfgareethqkEI 542
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEARAELA-------------------EA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 543 KALYTATEKLSKENESLKSKLEhankeNSDVIAlwksKLETAIASHQQAMEELkvsfSKGLGTETAEFAELKTQIEKMRL 622
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELL-----QSPVIQ----QLRAQLAELEAELAEL----SARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38044112 623 DYQHEIENLQNQQDSERAAHAKEMEALRAKL------MKVIKEKENSLEAIRSKLDKAEDQHlvemEDTLNKLQEAEI 694
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARL 379
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
980-1326 |
8.45e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 980 KARYERATSETKtkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEEL---RKQADKAKAAQTAEDAMQIMEQMTKEK 1056
Cdd:PLN02939 36 RARRRGFSSQQK---KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTvmeLPQKSTSSDDDHNRASMQRDEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1057 TETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSK-----ELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQE 1131
Cdd:PLN02939 113 NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARlqaleDLEKILTEK-EALQGKINILEMRLSETDARIKLAAQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1132 ENVK---LAEELGRSRDEVTshQKLEEERSVLNNQLLEMKkreskfikDADEEKASLQKSISITSALL---TEKDAELEK 1205
Cdd:PLN02939 192 EKIHveiLEEQLEKLRNELL--IRGATEGLCVHSLSKELD--------VLKEENMLLKDDIQFLKAELievAETEERVFK 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 1206 LRNEVTVLrgeNASAKSLHSVVQTLESDKVKLEL--------KVKNLELQLkenkrqlssssgntDTQADEDERAqesqi 1277
Cdd:PLN02939 262 LEKERSLL---DASLRELESKFIVAQEDVSKLSPlqydcwweKVENLQDLL--------------DRATNQVEKA----- 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 38044112 1278 dflnsvIVDLQRkNQDLKMKVEMMSEAALNGNGDDLNNYDSDDQEKQSK 1326
Cdd:PLN02939 320 ------ALVLDQ-NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLK 361
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
789-944 |
8.96e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 789 LQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDE 868
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38044112 869 REEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQ 944
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
724-1004 |
9.52e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 724 EEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQiKHLEIEKNAESSKassITRELQGRELKLTNLQENLSEVSQVKE-- 801
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQ-ERMAMERERELER---IRQEERKRELERIRQEEIAMEISRMREle 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 802 TLEKELQILKEKFAEASEEAVSV-------QRSMQETVNKLHQ-KEEQFNMLSSDLEKLRENLA-DMEAKFREKDEREEQ 872
Cdd:pfam17380 382 RLQMERQQKNERVRQELEAARKVkileeerQRKIQQQKVEMEQiRAEQEEARQREVRRLEEERArEMERVRLEEQERQQQ 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38044112 873 LIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHE 952
Cdd:pfam17380 462 VERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEE 541
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 38044112 953 EEKkelerklsdlEKKMETSHN-QCQELKARYERATSETKTKHEEILQNLQKT 1004
Cdd:pfam17380 542 RRK----------QQEMEERRRiQEQMRKATEERSRLEAMEREREMMRQIVES 584
|
|
| |
