|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
656-1203 |
5.18e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 5.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 656 QRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEME-LKARLTQA 734
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 735 QASFEREREGLQSsawteekvrgLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQI 814
Cdd:COG1196 315 EERLEELEEELAE----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 815 EAQfQSDCQKVTERCESALQSLEGRyRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQER 894
Cdd:COG1196 385 AEE-LLEALRAAAELAAQLEELEEA-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 895 EMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEM 974
Cdd:COG1196 463 ELLAELLEE-AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 975 EHDQERqeMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQ 1054
Cdd:COG1196 542 AALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1055 Q---GEQLLEENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEP--------ATEFFGNTAEQT 1123
Cdd:COG1196 620 DtllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAeleelaerLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1124 EQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQL 1203
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-1022 |
9.29e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 9.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 373 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRKEREQiLQQ 447
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAE-LAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 448 AGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENltnklqrnlenvlaekfgdldpssaeff 527
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---------------------------- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 528 lQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAnsggiepehglgSEECNPLNMSIEA 607
Cdd:COG1196 317 -RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------------EAELAEAEEELEE 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 608 ELVIEQMKEQHhrdicclRLELEDKVRHYEKQLDetvvsckkAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK 687
Cdd:COG1196 384 LAEELLEALRA-------AAELAAQLEELEEAEE--------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 688 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLqSSAWTEEKVRGLTQELEQFHQ 767
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF-LEGVKAALLLAGLRGLAGAVA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 768 EQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAqFQSDCQKVTERCESALQSLEGRYRQELKDL 847
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-LPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 848 QEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSE 927
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 928 TQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAE 1007
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
650
....*....|....*
gi 1890284505 1008 msTEISRLQSKIKEM 1022
Cdd:COG1196 767 --RELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
531-1100 |
1.65e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 531 ERLTQMRNEYERQCRVLQDQVD------ELQSELEEYRAQGRVLRLplknspsEEVEANSGGIEPEHGLGSEECNPLNMS 604
Cdd:COG1196 189 ERLEDILGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKL-------RELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 605 I-EAELVIEQMKEQHHRdiccLRLELEDKVRHYEKQLDEtvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQA 683
Cdd:COG1196 262 LaELEAELEELRLELEE----LELELEEAQAEEYELLAE-----LARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 684 AVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM-----ELKARLTQAQASFEREREGLQSSAWTEEKVRGL 758
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaeeELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 759 TQELEQFHQEQLTslvEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 838
Cdd:COG1196 413 LERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 839 RYRQELKDLQEQQREEKSQWEFEKDELTQEC---------------------------------------AEAQELLKET 879
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligveaayeaaleaalaaalqnivveddevaAAAIEYLKAA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 880 lKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILElkSSHKRELREREEVLCQAG 959
Cdd:COG1196 570 -KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--AARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 960 ASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQsgcqvI 1039
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE-----L 721
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1890284505 1040 GEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENvKMATEISRLQQRLQKLEP 1100
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
407-825 |
2.37e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 2.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 407 HHAAIERRNEYnlrkldEEYKERIAALKNELRkEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE 486
Cdd:TIGR02168 669 NSSILERRREI------EELEEKIEELEEKIA-ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 487 lLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGR 566
Cdd:TIGR02168 742 -VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 567 VLRLPLKNSPSEEVEAnsggiepehglgseecnplnmSIEAElVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvs 646
Cdd:TIGR02168 821 NLRERLESLERRIAAT---------------------ERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESEL--- 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 647 ckKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRLQHEME 726
Cdd:TIGR02168 876 --EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 727 LkarltQAQASFEREREGLQSSAwtEEKVRGLTQELEQFHQEQLTSLVEkhtLEKEELRKELLEKHQRELQEGREKME-- 804
Cdd:TIGR02168 953 L-----EEAEALENKIEDDEEEA--RRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEAKETLEea 1022
|
410 420 430
....*....|....*....|....*....|
gi 1890284505 805 -TECNRRTS--------QIEAQFQSDCQKV 825
Cdd:TIGR02168 1023 iEEIDREARerfkdtfdQVNENFQRVFPKL 1052
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
701-1335 |
2.65e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 2.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 701 KKQLQvKLEEEKTHLQEKLRLQHEMELKarltQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEKHT 778
Cdd:COG1196 199 ERQLE-PLERQAEKAERYRELKEELKEL----EAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 779 LEKEELRKELLEKHQRELQEGREKmetecnrrtsqieaqfqsdcqkvtERCESALQSLEGRyRQELKDLQEQQREEKSQW 858
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAEL------------------------ARLEQDIARLEER-RRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 859 EFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtykehLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQIL 938
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE-----AEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 939 ELKSSHKRELREREEVLcQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSK 1018
Cdd:COG1196 404 ELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1019 IKEMQQATSPLSMLQsgcQVIGEEEVEGDGALSLLQQGEQ-LLEENGDVLLSLQRAHEQAVKE--NVKMATEISRLQQRL 1095
Cdd:COG1196 483 LEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLrGLAGAVAVLIGVEAAYEAALEAalAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1096 QKLEPGLVMSsclDEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEA 1175
Cdd:COG1196 560 AAAIEYLKAA---KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1176 SVEgfSELENSEETRTESWELKNQISQLQEQlmmlcadcdRASEKKQDLLFDVSVLKKKLKMLERipeaspKYKLLYEDV 1255
Cdd:COG1196 637 RRA--VTLAGRLREVTLEGEGGSAGGSLTGG---------SRRELLAALLEAEAELEELAERLAE------EELELEEAL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1256 SRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEGLNVLVLRLQGKIEKL 1335
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
696-1637 |
4.76e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 4.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 696 RHEEEKKQLQVKLEEEKTHLQeklrlqhemelkaRLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFhqeQLTSLVe 775
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLD-------------RLEDILNELERQLKSLERQAEKAERYKELKAELREL---ELALLV- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 776 khtlekeeLRKELLEKHQRELQEGREKMETECNRRTSQIEAqfqsdCQKVTERCESALQSLEGRYRQELKDLQEQQREek 855
Cdd:TIGR02168 232 --------LRLEELREELEELQEELKEAEEELEELTAELQE-----LEEKLEELRLEVSELEEEIEELQKELYALANE-- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 856 sqwefeKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtYKEHLNSMVVERQQLLQDLEDLRN----------V 925
Cdd:TIGR02168 297 ------ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEELESLEAeleeleaeleE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 926 SETQQSLLSDQILELKSshkrELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLlamenihkatcetADRER 1005
Cdd:TIGR02168 370 LESRLEELEEQLETLRS----KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL-------------KKLEE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1006 AEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHE---QAVKENV 1082
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1083 KMATEISRLQQRLQKL---EPG------LVMSSCLDEPATEFFgNTAEQTEQFLQQNRTKQVegvtrrhvlSDLEDDEVR 1153
Cdd:TIGR02168 513 KNQSGLSGILGVLSELisvDEGyeaaieAALGGRLQAVVVENL-NAAKKAIAFLKQNELGRV---------TFLPLDSIK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1154 DLGSTGTSsvqrqevkiEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMlCADCDRASEkkqdllfdvsvLKK 1233
Cdd:TIGR02168 583 GTEIQGND---------REILKNIEGFLGVAKDLVKFDP--KLRKALSYLLGGVLV-VDDLDNALE-----------LAK 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1234 KLKMLERI-----PEASPKYKLLYEDVSRENDCL--QEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETfls 1306
Cdd:TIGR02168 640 KLRPGYRIvtldgDLVRPGGVITGGSAKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ--- 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1307 LEKSYDEVKIENEGLNVLVLRLQGKIEKLQESVVQRcdcclwEASLENLEIEPDGNILQLNQTLEEcvprvrsvhhvIEE 1386
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL------SKELTELEAEIEELEERLEEAEEE-----------LAE 779
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1387 CKQENQYLEgntqllekvkaheiawlhGTIQTHQERprvqnqvILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTR 1466
Cdd:TIGR02168 780 AEAEIEELE------------------AQIEQLKEE-------LKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1467 KLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGT 1546
Cdd:TIGR02168 835 ATERRLEDLEEQIEELS--EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1547 LNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQN-QEKLQELNQRLTEMlcqkekep 1625
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKIKEL-------- 984
|
970
....*....|....*
gi 1890284505 1626 GN---SALEEREQEK 1637
Cdd:TIGR02168 985 GPvnlAAIEEYEELK 999
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-923 |
7.51e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 7.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 344 LALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 421
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 422 LDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLT 501
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 502 NKLQRNLENVLAEKFGDLDpssaefflQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVE 581
Cdd:COG1196 375 AEAEEELEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 582 ANSGgiepEHGLGSEECNPLNMSIEAELVIEQMKEQHHRdiccLRLELEDKVRHYEKQLdetvvsckkaQENMKQRHENE 661
Cdd:COG1196 447 AAEE----EAELEEEEEALLELLAELLEEAALLEAALAE----LLEELAEAAARLLLLL----------EAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 662 THTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQhemeLKARLTQAQASFERE 741
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 742 REGLQSSAWTEEKVRG-------LTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQI 814
Cdd:COG1196 585 RAALAAALARGAIGAAvdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG-SAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 815 EAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEksqwefEKDELTQECAEAQELLKETLKREKTTSLVLTQER 894
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE------EEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580
....*....|....*....|....*....
gi 1890284505 895 EMLEKTYKEHLNSMVVERQQLLQDLEDLR 923
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1240 |
8.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 8.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 404 VDDHHAAIERrneyNLRKLDEEYK--ERIAALKNELRKEREQIL----QQAGKQRLELEQEIEKAKTEENYIRDRLALSL 477
Cdd:TIGR02168 191 LEDILNELER----QLKSLERQAEkaERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 478 KENSRLENELLENAEKLAEYE---NLTNKLQRNLEN---VLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQV 551
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQkelYALANEISRLEQqkqILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 552 DELQSELEEYRAQgrvlrlpLKNSPSEEVEANSGGIEPEHGLGSEEcnplnmsiEAELVIEQMKEQHHRDICCLRLELED 631
Cdd:TIGR02168 347 EELKEELESLEAE-------LEELEAELEELESRLEELEEQLETLR--------SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 632 KVRHYEKQLDETvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE 711
Cdd:TIGR02168 412 LEDRRERLQQEI-------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 712 KTHLQEKLRLQHEMELKARLTQAQASFERERE---GLQSSAWTEEKVR-GLTQELEQFHQEQLTSLVEKhTLEKEELRKE 787
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSglsGILGVLSELISVDeGYEAAIEAALGGRLQAVVVE-NLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 788 LLEKHQR--------ELQEGREKMETECNRRTSQ-IEAQFQSDCQKVTERCESALQSLEGRYRqelkdlqeqqreeksqw 858
Cdd:TIGR02168 564 FLKQNELgrvtflplDSIKGTEIQGNDREILKNIeGFLGVAKDLVKFDPKLRKALSYLLGGVL----------------- 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 859 efekdeLTQECAEAQELLKETLKREkttsLVLTQEREMLEKTY-----KEHLNSMVVERQQLLQDLEDLRNVSETQQSLL 933
Cdd:TIGR02168 627 ------VVDDLDNALELAKKLRPGY----RIVTLDGDLVRPGGvitggSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 934 SDQILELKSshkrELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCEtADRERAEMSTEIS 1013
Cdd:TIGR02168 697 EKALAELRK----ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-LEAEIEELEERLE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1014 RLQSKIKE----MQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEEngdVLLSLQRAHEQAVKENVKMATEIS 1089
Cdd:TIGR02168 772 EAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---RLESLERRIAATERRLEDLEEQIE 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1090 RLQQRLQKLEPGLvmsscldEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDevrdlgstgtssVQRQEVK 1169
Cdd:TIGR02168 849 ELSEDIESLAAEI-------EELEELIEELESELEALLNERASLEEALALLRSELEELSEE------------LRELESK 909
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1890284505 1170 IEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMLCAD-CDRASEKKQDLLFDVSVLKKKLKMLER 1240
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLE--GLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1446-1817 |
1.02e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1446 QHQATIAELELEKTKLQELTRKLKE---RVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLryesEKLQQE 1522
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKII----SQLNEQ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1523 NSILRNEITTLNEEDSisnlklgTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQ 1602
Cdd:TIGR04523 344 ISQLKKELTNSESENS-------EKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1603 NQEKLQELNQRLTEMLCQKEKEPGN-SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKD 1681
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1682 ELEKMKQLHRCPD--LSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAK------SSLLE-------HRIATMKQE 1746
Cdd:TIGR04523 497 ELKKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkKENLEkeideknKEIEELKQT 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1747 QKS--------------WEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1812
Cdd:TIGR04523 577 QKSlkkkqeekqelidqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
....*
gi 1890284505 1813 AGGKS 1817
Cdd:TIGR04523 657 IRNKW 661
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-1100 |
1.65e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 354 KNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 431
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 432 ALKNELRKEREQiLQQAGKQRLELEQEIEKAKTEenyiRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV 511
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 512 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEh 591
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 592 glgseecnpLNMSIEAELVIEQMKEQHHRDICCLRLELeDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQ--- 668
Cdd:TIGR02168 449 ---------LEELQEELERLEEALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsgl 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 669 ------ISDL------------------------KNEIAELQGQAAVLKEAHHEAT-----------------CRHEEEK 701
Cdd:TIGR02168 519 sgilgvLSELisvdegyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVTflpldsikgteiqgndrEILKNIE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 702 KQLQVKLEEEKTH-------------------LQEKLRLQHEMELKARLTQAQASFEReREGLQS--SAWTEEKVRGLTQ 760
Cdd:TIGR02168 599 GFLGVAKDLVKFDpklrkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVR-PGGVITggSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 761 ELeqfhqEQLTSLVEKHTLEKEELRKEL--LEKHQRELQEGREKMETECNRRTSQIEAQfqsdcQKVTERCESALQSLEG 838
Cdd:TIGR02168 678 EI-----EELEEKIEELEEKIAELEKALaeLRKELEELEEELEQLRKELEELSRQISAL-----RKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 839 RYRQELKDLQEQQREEKSQWEfEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHlnsmvverQQLLQD 918
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEE-RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL--------TLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 919 LEDLRNVSETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQrLERLEMEHDQERQEMMSKLLAMENIHKATc 998
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-IEELESELEALLNERASLEEALALLRSEL- 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 999 ETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVigeeevegdgalSLLQQGEQLLEENGDVLLSLQRAHEQAV 1078
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV------------RIDNLQERLSEEYSLTLEEAEALENKIE 964
|
810 820
....*....|....*....|..
gi 1890284505 1079 KENVKMATEISRLQQRLQKLEP 1100
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKELGP 986
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
401-986 |
2.08e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 401 ASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEE------NYIRDRLA 474
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAeeakkaEEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 475 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDP-SSAEFFLQEERLTQMRNEYERQCRVLQDQVDE 553
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 554 LQSELEEYRAQGRVLRLPLKNSpSEEVEANSGGIEPEHGLGSEEcnplnmSIEAELVIEQMKEQHHRDicclrlELEDKV 633
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 634 RHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 713
Cdd:PTZ00121 1401 EEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 714 HLQEKLRLQHEMELKARLTQAQAsfererEGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHtlEKEELRKELLEKHQ 793
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKA------DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK--KADEAKKAEEKKKA 1548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 794 RELQEGREKMETECNRRTSQIEAQfQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQecaeAQ 873
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----AE 1623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 874 ELLKETLKREKTTSLVLTQEREM--LEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELRER 951
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
570 580 590
....*....|....*....|....*....|....*
gi 1890284505 952 EEVLCQAGASEQLASQRLERLEMEHDQERQEMMSK 986
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
359-955 |
3.55e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALkNELR 438
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-RRDKLTEEYAELKEEL-EDLR 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 439 KEREQILQQAGKQRLEL---EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV---L 512
Cdd:TIGR02169 371 AELEEVDKEFAETRDELkdyREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleI 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 513 AEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLR--LPLKNSPSEEVEANSGGI--- 587
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASEerVRGGRAVEEVLKASIQGVhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 588 -------EPEHGLGSEEC--NPL-NMSIEAELV----IEQMKE---------------QHHRDICCLRL----------- 627
Cdd:TIGR02169 527 vaqlgsvGERYATAIEVAagNRLnNVVVEDDAVakeaIELLKRrkagratflplnkmrDERRDLSILSEdgvigfavdlv 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 628 ELEDKVRHYEKQ-LDETVV-----------------------------------------SCKKAQENMKQRHENETHTL 665
Cdd:TIGR02169 607 EFDPKYEPAFKYvFGDTLVvedieaarrlmgkyrmvtlegelfeksgamtggsraprggiLFSRSEPAELQRLRERLEGL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 666 EKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQV------KLEEEKTHLQEKLR-LQHEME--------LKAR 730
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeeeKLKERLEELEEDLSsLEQEIEnvkselkeLEAR 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 731 LTQAQASFEREREGLQS-------SAWteEKVRGLTQELEQFHQEQLTSLVE-KHTLEKEELRKELLEKHQRELQEGREK 802
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDlearlshSRI--PEIQAELSKLEEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRID 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 803 METECNRRTSQIEA--QFQSDCQKVTERCESALQSLEGRyrqeLKDLQEQQREEKSQWEFEKDELtQECAEAQELLKETL 880
Cdd:TIGR02169 845 LKEQIKSIEKEIENlnGKKEELEEELEELEAALRDLESR----LGDLKKERDELEAQLRELERKI-EELEAQIEKKRKRL 919
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 881 KREKTTSLVLTQEREMLEKTYK------------EHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKREL 948
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGedeeipeeelslEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
....*..
gi 1890284505 949 REREEVL 955
Cdd:TIGR02169 1000 EERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
615-1337 |
5.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 5.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 615 KEQHHRDICCLRL-ELEDKVRHYEKQLDETVVSCKKAQENMKqrhenethTLEKQISDLKNEIAELQGQAAVLKEAHHEA 693
Cdd:TIGR02168 222 LRELELALLVLRLeELREELEELQEELKEAEEELEELTAELQ--------ELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 694 tcrheeekKQLQVKLEEEKTHLQEKLRlqhemelkaRLTQAQASFEREREGLQSSAW-TEEKVRGLTQELEQFhQEQLTS 772
Cdd:TIGR02168 294 --------ANEISRLEQQKQILRERLA---------NLERQLEELEAQLEELESKLDeLAEELAELEEKLEEL-KEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 773 LVEKhtLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIE---AQFQSDCQKVtERCESALQSLEGRYRQELKDLQE 849
Cdd:TIGR02168 356 LEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIAslnNEIERLEARL-ERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 850 QQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEH---LNSMVVERQQLLQDLEDLRNV- 925
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERLQENLEGFSEGVKALl 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 926 -SETQQSLLSDQILELKSSHKRELREREEVLcqAGASEQLASQRLE--RLEMEHDQERQEMMSKLLAMENIHKATCETAD 1002
Cdd:TIGR02168 513 kNQSGLSGILGVLSELISVDEGYEAAIEAAL--GGRLQAVVVENLNaaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1003 RERAE-MSTEISRLQSKIKEMQQATSPLSMLQSGCQVIgEEEVEGDGALSLLQQGEQLLEENGDVLL---SLQRAHEQAV 1078
Cdd:TIGR02168 591 REILKnIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV-DDLDNALELAKKLRPGYRIVTLDGDLVRpggVITGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1079 KENVKMATEISRLQQRLQKLEpglvmsscldepateffgNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLgst 1158
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELE------------------EKIAELEKALAELRKELEELEEELEQLRKELEELSRQI--- 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1159 gtsSVQRQEVKIEESEASvegfSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKML 1238
Cdd:TIGR02168 729 ---SALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1239 -ERIPEASPKYKLL---YEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLS-LEKSYDE 1313
Cdd:TIGR02168 802 rEALDELRAELTLLneeAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNE 881
|
730 740
....*....|....*....|....
gi 1890284505 1314 VKIENEGLNVLVLRLQGKIEKLQE 1337
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRE 905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1001-1812 |
7.42e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 7.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1001 ADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEevegdgalslLQQGEQLLEENGDVLLSLQRAHEQAVKE 1080
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE----------LQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1081 NVKMATEISRLQQRLQKLEPGLvmsscldepatEFFGNTAEQTEQFLQQNRTKQVEGVTRrhvLSDLEDDEVRDLGSTgT 1160
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERL-----------ANLERQLEELEAQLEELESKLDELAEE---LAELEEKLEELKEEL-E 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1161 SSVQRQEVKIEESEASVEGFSEL-ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKM-- 1237
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELeEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEae 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1238 LERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIE 1317
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1318 NEGLNVLVLRLQGKIEKLQEsvvqrcdcclWEASLENLEIEPDGNILqlnqtleecvprvrsvhhvieeCKQENQYLEGn 1397
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEG----------YEAAIEAALGGRLQAVV----------------------VENLNAAKKA- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1398 TQLLEKVKAHEIAWLHGTIQTHQErPRVQNQVILEENTTLLGFQDKHFQhqatiAELELEK---------------TKLQ 1462
Cdd:TIGR02168 562 IAFLKQNELGRVTFLPLDSIKGTE-IQGNDREILKNIEGFLGVAKDLVK-----FDPKLRKalsyllggvlvvddlDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1463 ELTRKLKERVTILVKQKDVLSHG---------------EKEEELKammhDLQITCSEMQQKVELLRYESEKLQQENSILR 1527
Cdd:TIGR02168 636 ELAKKLRPGYRIVTLDGDLVRPGgvitggsaktnssilERRREIE----ELEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1528 NEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKL 1607
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1608 QELNQRLTEmlcqkekepGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMK 1687
Cdd:TIGR02168 792 EQLKEELKA---------LREALDELRAELTLLNEEAA----NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1688 QLHRcpDLSDFQQKISSVLsynEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWEHQSASLKSQLVASQEK 1767
Cdd:TIGR02168 859 AEIE--ELEELIEELESEL---EALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELEELREKLAQLELR 930
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1890284505 1768 VQNLEDTVQNVNlqmSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1812
Cdd:TIGR02168 931 LEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1165-1817 |
1.44e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1165 RQEVKIEESEASVEGFSELENSeeTRTESWELKNQISQLQEQL-----MMLCadcdraseKKQDLLFDVSVLKKKLKMLE 1239
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASS--ARSQANSIQSQLEIIQEQArnqnsMYMR--------QLSDLESTVSQLRSELREAK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1240 RipeaspkyklLYEDVSREndcLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMeevtetFLSLEKSYDEVKIENE 1319
Cdd:pfam15921 338 R----------MYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL------LADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1320 GLNVLVLRLQGK---IEKLQESVVQR-CDCCLWEASLENLEIEPDGNilqlnqtLEECVPRVRSVHHVIEECKQENQYLE 1395
Cdd:pfam15921 399 QNKRLWDRDTGNsitIDHLRRELDDRnMEVQRLEALLKAMKSECQGQ-------MERQMAAIQGKNESLEKVSSLTAQLE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1396 GNTQLLEKVkAHEIAWLHGTIQTHQerprvqnQVILEENTTLlgfQDKHFQHQATIAELElektklqeltrKLKERVTIL 1475
Cdd:pfam15921 472 STKEMLRKV-VEELTAKKMTLESSE-------RTVSDLTASL---QEKERAIEATNAEIT-----------KLRSRVDLK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1476 VKQkdvLSHGEKEEElkaMMHDLQITCsemqqkvELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMW 1555
Cdd:pfam15921 530 LQE---LQHLKNEGD---HLRNVQTEC-------EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1556 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEML--CQKEKEPGNSALEER 1633
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLneVKTSRNELNSLSEDY 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1634 EQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQ----ENHLLKDELEKMKQL-HRCPDLSDFQQKISSVLSY 1708
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsDGHAMKVAMGMQKQItAKRGQIDALQSKIQFLEEA 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1709 NEKLLKEKEALSEELNScvdklaksslLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSD 1788
Cdd:pfam15921 757 MTNANKEKHFLKEEKNK----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
650 660
....*....|....*....|....*....
gi 1890284505 1789 LRVTQQEKEALKQEVMSLHKQLQNAGGKS 1817
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQGPGYTS 855
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-971 |
1.96e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 374 ERVDQVVREKEKLRSDLDKAEKLKSlmasEVDDHHAAIERRNEYNLRKLDEEYKEriaalKNELRKEREQILQQAG--KQ 451
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKA----EAAEKKKEEAKKKADAAKKKAEEKKK-----ADEAKKKAEEDKKKADelKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 452 RLELEQEIEKAKTEENYIRDRLALSLK-ENSRLENELLENAEKLAEYENLTNKLQRnlenvlAEKFGDLDPSSAEfflqe 530
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADEAKKKAEEAKKAEEAKKKAEE------AKKADEAKKKAEE----- 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 531 erlTQMRNEYERQCRVLQDQVDELQSElEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAElv 610
Cdd:PTZ00121 1482 ---AKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE-- 1555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 611 iEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLE--KQISDLKNEIAELQGQAAVLKE 688
Cdd:PTZ00121 1556 -ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeaKKAEEAKIKAEELKKAEEEKKK 1634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 689 AHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLtqeleqfhqE 768
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA---------E 1705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 769 QLTSLVEKHTLEKEELRKellEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQ 848
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKK---AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 849 EQQREEKSQWEFEKDELTQECAEAQELLKETlkrEKTTSLVLTQEREMLEKTYKEHL---NSMVVERQQLLQDLEDLRNV 925
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANIIEG---GKEGNLVINDSKEMEDSAIKEVAdskNMQLEEADAFEKHKFNKNNE 1859
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1890284505 926 SETQQSLLSDQilelkSSHKRELREREEVLCQAGASEQLASQRLER 971
Cdd:PTZ00121 1860 NGEDGNKEADF-----NKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-943 |
2.90e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 606 EAELVIEQMKEQHHRdiccLRLELEDKVRhYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 685
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 686 LKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLrlqHEMELK-ARLTQAQASFEREREGLQS-SAWTEEKVRGLTQELE 763
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI---GELEAEiASLERSIAEKERELEDAEErLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 764 QFHQEQLTSLVEKHTLEKE-ELRKELLEKHQRELQEgrekmETECNRRTSQIEAQFQSDCQKVTERCESaLQSLEGRYRQ 842
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEyAELKEELEDLRAELEE-----VDKEFAETRDELKDYREKLEKLKREINE-LKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 843 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKRE---KTTSLVLTQEREMLEKTYKEH--LNSMVVERQQLLQ 917
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwklEQLAADLSKYEQELYDLKEEYdrVEKELSKLQRELA 493
|
330 340
....*....|....*....|....*.
gi 1890284505 918 DLEDLRNVSETQQSLLSDQILELKSS 943
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
696-995 |
4.29e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 4.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 696 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgltqELEQFHQEQLTSLVE 775
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKR----ELERIRQEEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 776 KhTLEKEELRKELLEKHQR---ELQEGREK--METECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQ 850
Cdd:pfam17380 376 R-MRELERLQMERQQKNERvrqELEAARKVkiLEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 851 QREEKSQWEfekdELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVE---RQQLLQDLEDLRN-VS 926
Cdd:pfam17380 455 EQERQQQVE----RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEerkRKLLEKEMEERQKaIY 530
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890284505 927 ETQQSllsdQILELKSSHKRELREREEVlcqagaSEQLASQRLERLEMEHDQERQEMMSKLLAMENIHK 995
Cdd:pfam17380 531 EEERR----REAEEERRKQQEMEERRRI------QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
490-1095 |
7.28e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 7.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 490 NAEKLAEYENLTNKLQRNLENVLAEKFGDLDPS----SAEFFLQEERLTQMRNEYERQCRVL----QDQVDELQSELEEy 561
Cdd:pfam15921 200 SGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisylKGRIFPVEDQLEALKSESQNKIELLlqqhQDRIEQLISEHEV- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 562 raqgRVLRLPLKNSpSEEVEANSggIEPEHGLGSEECNPLNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQL 640
Cdd:pfam15921 279 ----EITGLTEKAS-SARSQANS--IQSQLEIIQEQARNQNSMYMRQLSdLESTVSQLRSELREAKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 641 ---DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAEL-----QGQAAVLKEAHHEATCRHeeekkqLQVKLEEEK 712
Cdd:pfam15921 352 vlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeQNKRLWDRDTGNSITIDH------LRRELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 713 THLQeklRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfhqeqltslvekhtlekeelRKELLEKH 792
Cdd:pfam15921 426 MEVQ---RL--EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLES--------------------TKEMLRKV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 793 QRELQEgrEKMETECNRRT-SQIEAQFQSDcQKVTERCESALQSLEGRYRQELKDLQEQQREEksqwefekDELTQECAE 871
Cdd:pfam15921 481 VEELTA--KKMTLESSERTvSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEG--------DHLRNVQTE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 872 AQELLKETLKREKTTSlVLTQEREMLEKTYKEH---LNSMVVERQQLLQDLEDlRNVSETQQSLLSDQilelKSSHKREL 948
Cdd:pfam15921 550 CEALKLQMAEKDKVIE-ILRQQIENMTQLVGQHgrtAGAMQVEKAQLEKEIND-RRLELQEFKILKDK----KDAKIREL 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 949 RER------EEVLCQAGASEQLASQRleRLEMEHDQERQEMMSKLLAMENIHKATcETADRERAEMSTEISRLQSKIKeM 1022
Cdd:pfam15921 624 EARvsdlelEKVKLVNAGSERLRAVK--DIKQERDQLLNEVKTSRNELNSLSEDY-EVLKRNFRNKSEEMETTTNKLK-M 699
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890284505 1023 QQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENG--DVLLS----LQRAHEQAVKENVKMATEISRLQQRL 1095
Cdd:pfam15921 700 QLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGqiDALQSkiqfLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-1100 |
7.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 7.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRK 439
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 440 EREQILqqagKQRLELEQEIEKAKTEENYIRDRLA--------LSLKENSRLENELLENAEKLAEYENLTNKLQRNLEnV 511
Cdd:TIGR02169 238 QKEAIE----RQLASLEEELEKLTEEISELEKRLEeieqlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-E 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 512 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLknspsEEVEANSGGIEPEH 591
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-----EEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 592 --------GLGsEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQ------- 656
Cdd:TIGR02169 388 kdyrekleKLK-REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlaadlsk 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 657 ------RHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ--VKLEEEKTHLQEKLRLQHEMELK 728
Cdd:TIGR02169 467 yeqelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEVAAG 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 729 ARLTQ---------------------AQASF----EREREGLQSSAWTEEKVRGLTQELEQFHQE---------QLTSLV 774
Cdd:TIGR02169 547 NRLNNvvveddavakeaiellkrrkaGRATFlplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTLVV 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 775 EKHTLEKEELRK--------ELLEK-----------------------HQRELQEGREKMETECNRRTSQIEAQFQ---- 819
Cdd:TIGR02169 627 EDIEAARRLMGKyrmvtlegELFEKsgamtggsraprggilfsrsepaELQRLRERLEGLKRELSSLQSELRRIENrlde 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 820 -----SDCQKVTERCESALQSLEGRyrqelkdlQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQER 894
Cdd:TIGR02169 707 lsqelSDASRKIGEIEKEIEQLEQE--------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 895 EMLEKTYKEHLNSMVVERQQLLQDLEDLRnvsETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEM 974
Cdd:TIGR02169 779 EALNDLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 975 EHDQERQemMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMlqsgcqvigEEEVEGDGALSLLQ 1054
Cdd:TIGR02169 856 IENLNGK--KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA---------QIEKKRKRLSELKA 924
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1890284505 1055 QGEQLLEENGDVLLSLQRAHEQAVKENV--KMATEISRLQQRLQKLEP 1100
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEP 972
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1508-1957 |
9.66e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 9.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1508 KVELLRYESEKLQQENSI--LRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKI- 1584
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELl 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1585 ---------KNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCK------- 1648
Cdd:TIGR04523 203 lsnlkkkiqKNKSLESQISELKKQNNQLKDNIEKKQQEINEK---------TTEISNTQTQLNQLKDEQNKIKkqlsekq 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1649 ---VQSSTLVSSLEAELSEVKIQTHIVQQE-----NHLLKDELEKMKQLHRC--PDLSDFQQKISSVLSYNEKLLKEKEA 1718
Cdd:TIGR04523 274 kelEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTN 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1719 LSEELNSCVDKLAKSsllEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEA 1798
Cdd:TIGR04523 354 SESENSEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1799 LKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQ---NTKAELTHSRE 1875
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkKLNEEKKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1876 KVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKvSQMNSLEQELETIHLENEGLKKKQVKLDE 1955
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE-KEIDEKNKEIEELKQTQKSLKKKQEEKQE 589
|
..
gi 1890284505 1956 QL 1957
Cdd:TIGR04523 590 LI 591
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-954 |
1.27e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 418 NLRKLDEEYKERIAALKNELRKErEQILQQAGkqrlELEQEIEKAKTEENYIRDRLALSLKENSRLENELlenaEKLAEY 497
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRT-ENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEV----KELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 498 ENLTNKLQRNLENVLAEKFGdldpssaefflQEERLTQ---MRNEYERQCRVLQDQVDELQsELEEYRAQGRVLRLPLKN 574
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRK-----------LEEKIREleeRIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 575 SPSEEVEansggIEPEHGLGSEECNplnmSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK--QLDETVVSCKKAQE 652
Cdd:PRK03918 305 YLDELRE-----IEKRLSRLEEEIN----GIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 653 NMKQRHENET---------------HTLEKQISDLKNEIAELQGQAAVLKEAHHE--------ATCRH---EEEKKQLQV 706
Cdd:PRK03918 376 RLKKRLTGLTpeklekeleelekakEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcPVCGReltEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 707 K-------LEEEKTHLQEKLRlqhemELKARLTQAQASFEREREgLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTL 779
Cdd:PRK03918 456 EytaelkrIEKELKEIEEKER-----KLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 780 EKEEL---------------RKELLEKHQRELQEGREKMEtecnRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQ-- 842
Cdd:PRK03918 530 LKEKLiklkgeikslkkeleKLEELKKKLAELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEyl 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 843 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLK-REKTTSLVLTQEREMLEKTYKEHLnSMVVERQQLLQDLED 921
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEElRKELEELEKKYSEEEYEELREEYL-ELSRELAGLRAELEE 684
|
570 580 590
....*....|....*....|....*....|...
gi 1890284505 922 LRNVSETQQSLLSDQilelksshKRELREREEV 954
Cdd:PRK03918 685 LEKRREEIKKTLEKL--------KEELEEREKA 709
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
772-1624 |
1.55e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 772 SLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL-----EGRYRQELKD 846
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyldyLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 847 LQEQQREEKSQWEFEKDELTQECAEAQELLKEtlKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVS 926
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKE--NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 927 ETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIhkatcETADRERA 1006
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL-----SSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1007 EMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSL---------------- 1070
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELkllkdelelkksedll 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1071 QRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTkQVEGVTRRHVLSDLEDD 1150
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV-AVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1151 EVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSV 1230
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1231 LKKKLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNK---ELTAEVFRLQDELKKMEEVTETFLSL 1307
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKaesELAKEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1308 EKSYDEVKIENEGLNvLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEEc 1387
Cdd:pfam02463 714 KLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE- 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1388 kQENQYLEGNTQLLEKVKAHEIAWLHG-TIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTR 1466
Cdd:pfam02463 792 -KEEKLKAQEEELRALEEELKEEAELLeEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1467 KLKERVTILVKQKDVLSHGEKEEELKAMMHDLQitcsEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISnlkLGT 1546
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELE----EESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL---LLE 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1890284505 1547 LNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKE 1624
Cdd:pfam02463 944 EADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
382-898 |
1.70e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 382 EKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRL--ELEQEI 459
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA-EEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKA 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 460 EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvlAEKFGDLDPSSAEFFLQEERLTQMRNE 539
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--AKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 540 YERQCRVL------QDQVDELQSELEEYRAQGRvlrlpLKNSPSEEVEANSGGIEPEHGLGSEECN-PLNMSIEAELVIE 612
Cdd:PTZ00121 1403 DKKKADELkkaaaaKKKADEAKKKAEEKKKADE-----AKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 613 QMKEQHHRDicclrlELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNeiAELQGQAAVLKEAhhE 692
Cdd:PTZ00121 1478 KAEEAKKAD------EAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKK--AEEAKKADEAKKA--E 1543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 693 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMEL------------KARLTQAQASFEREREGLQSSAWTEEKVRGLTQ 760
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 761 EL-----EQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGR----EKMETECNRRTSQIEAQFQSDCQKVTERCES 831
Cdd:PTZ00121 1624 ELkkaeeEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKkaeeDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890284505 832 A--LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 898
Cdd:PTZ00121 1704 AeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
361-805 |
1.86e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 361 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 435
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 436 ELRKEREQILQQAGKQRL---ELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvL 512
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 513 AEKFGDL--DPSSAEFFLQE-----ERLTQMRNEYERQCRVLQDQVDELQSELEE---------YRAQGRVLRLPLKNSP 576
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSPHVETIEEDRER 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 577 SEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKE----------QHHRDICCLRLELEDKVRHYEKQLDETVVS 646
Cdd:PRK02224 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEErredleeliaERRETIEEKRERAEELRERAAELEAEAEEK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 647 CKKAQENMK--QRHENETHTLEKQISDLKNEIAELQGQAAVLK--EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQ 722
Cdd:PRK02224 557 REAAAEAEEeaEEAREEVAELNSKLAELKERIESLERIRTLLAaiADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 723 HEMELK---ARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFHQEqlTSLVEKHTLEKEELRKELlekhqRELQEG 799
Cdd:PRK02224 637 RELEAEfdeARIEEAREDKERAEEYLEQ---VEEKLDELREERDDLQAE--IGAVENELEELEELRERR-----EALENR 706
|
....*.
gi 1890284505 800 REKMET 805
Cdd:PRK02224 707 VEALEA 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1446-1691 |
1.98e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1446 QHQATIAELELEKTKLQELTRKLKErvtilvKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSI 1525
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE------LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1526 LRNEITTLNEEDSISNLKLGTLNGSQEEM-WQKTETVKQENAAVQKMVENLKKQIS---ELKIKNQQLDLENTELSQKNS 1601
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELeEELAELEEELEELEEELEELEEELEEaeeELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1602 QNQEKLQELNQRLTEML-CQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLK 1680
Cdd:COG1196 373 ELAEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250
....*....|.
gi 1890284505 1681 DELEKMKQLHR 1691
Cdd:COG1196 453 ELEEEEEALLE 463
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-953 |
2.12e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 370 RHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY---KERIAALKNELRKER 441
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELerlEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 442 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEyenltnkLQRNLENVLAEkfgdldp 521
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA-------LRAEAAALLEA------- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 522 SSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGrvlrlplKNSPSEEVEANSggiEPEHGLGSEEcnpL 601
Cdd:COG4913 396 LEEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRK-------SNIPARLLALRD---ALAEALGLDE---A 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 602 NMSIEAELVieQMKEQH-------------HRdiccLRL----ELEDKVRHY------EKQLDETVVSCKKAQENMKQRH 658
Cdd:COG4913 459 ELPFVGELI--EVRPEEerwrgaiervlggFA----LTLlvppEHYAAALRWvnrlhlRGRLVYERVRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 659 ENE-THTLEKQISDLKNEI-AELQGQAAVLKEAHHEA-----------------TCRHE--------------------- 698
Cdd:COG4913 533 PDSlAGKLDFKPHPFRAWLeAELGRRFDYVCVDSPEElrrhpraitragqvkgnGTRHEkddrrrirsryvlgfdnrakl 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 699 EEKKQLQVKLEEEKTHLQEKLRlqhemELKARLTQAQASFEREReGLQSSAWTEEKVRGLTQELEQfHQEQLTSLvEKHT 778
Cdd:COG4913 613 AALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAE-LEAELERL-DASS 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 779 LEKEELRKElLEKHQRELQEGREKMEtECNRRTSQIEAQFQsDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQW 858
Cdd:COG4913 685 DDLAALEEQ-LEELEAELEELEEELD-ELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 859 EFEKdeltqecaEAQELLKETLKREKTTslvLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQIL 938
Cdd:COG4913 762 AVER--------ELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLP 830
|
650
....*....|....*
gi 1890284505 939 ELKSSHKRELREREE 953
Cdd:COG4913 831 EYEERFKELLNENSI 845
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
442-1337 |
2.24e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 442 EQILQQAGKQRLELEQEI-----EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKf 516
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAagsrlKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 517 gdldpssaefflQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAqgrvlRLPLKNSPSEEVEANSGGIEPEHGLGSE 596
Cdd:pfam02463 224 ------------EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ-----EIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 597 ECNPLnMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEI 676
Cdd:pfam02463 287 ELKLL-AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 677 AELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQE-KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEkv 755
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ-- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 756 rgLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQS 835
Cdd:pfam02463 444 --GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 836 LEGRY-RQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQ 914
Cdd:pfam02463 522 GRIISaHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 915 LLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIh 994
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQE- 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 995 katcETADRERAEMSTEISRLQSKIKEMQQAtsplsmlqsgcqvigEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAH 1074
Cdd:pfam02463 681 ----LQEKAESELAKEEILRRQLEIKKKEQR---------------EKEELKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1075 EQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRD 1154
Cdd:pfam02463 742 KQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1155 LGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQD-LLFDVSVLKK 1233
Cdd:pfam02463 822 LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESkEEKEKEEKKE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1234 KLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMET-----RYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLE 1308
Cdd:pfam02463 902 LEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEllleeADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIE 981
|
890 900
....*....|....*....|....*....
gi 1890284505 1309 KSYDEVKIENEGLNVLVLRLQGKIEKLQE 1337
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
665-888 |
2.47e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 665 LEKQISDLKNEIAELQGQAAVLKEAHHEATcrHEEEKKQLQVKLEEekthLQEKLRlqhemELKARLTQAQASFEREREG 744
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD--LSEEAKLLLQQLSE----LESQLA-----EARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 745 LQSSAWTEEKVrgLTQELEQFHQEQLTSLvekhTLEKEELRKELLEKH------QRELQEGREKMETECNRRTSQIEAQF 818
Cdd:COG3206 249 LGSGPDALPEL--LQSPVIQQLRAQLAEL----EAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 819 QsdcqkVTERCESALQSLEGRYRQELKDLQEQQREEKsqwefekdELTQECAEAQELLKETLKREKTTSL 888
Cdd:COG3206 323 E-----ALQAREASLQAQLAQLEARLAELPELEAELR--------RLEREVEVARELYESLLQRLEEARL 379
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
899-1644 |
3.17e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 899 KTYKEHLNSmvVERQQLLQDLEDLRNVSETQQSLLSDQILELKSsHKRELREREEvlcqagaseQLASQRLERLEMEHDQ 978
Cdd:TIGR02168 216 KELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEE-LTAELQELEE---------KLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 979 ER--------QEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQAtspLSMLQsgcQVIGEEEVEGDGAL 1050
Cdd:TIGR02168 284 EElqkelyalANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE---LAELE---EKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1051 SLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEpglvmsscldepateffgntaEQTEQfLQQN 1130
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE---------------------ARLER-LEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1131 RTKQVEgvTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENS-EETRTESWELKNQISQLQEQLMM 1209
Cdd:TIGR02168 416 RERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREElEEAEQALDAAERELAQLQARLDS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1210 LCADCDRASEKKQDLLFdvsVLKKKLKMLERIPEAS------PKYKLLYEDVsrendcLQEELRMMETRYDEA------- 1276
Cdd:TIGR02168 494 LERLQENLEGFSEGVKA---LLKNQSGLSGILGVLSelisvdEGYEAAIEAA------LGGRLQAVVVENLNAakkaiaf 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1277 LENNKELTAEVFRL------------QDELKKMEEVTETFLSLEKSYDEVKIENEGL--NVLV-------LRLQGKIEKL 1335
Cdd:TIGR02168 565 LKQNELGRVTFLPLdsikgteiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVvddldnaLELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1336 QESVVQRCDCCLWEASL-------ENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAH- 1407
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVItggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEl 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1408 ---------EIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQ 1478
Cdd:TIGR02168 725 srqisalrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1479 KDvlshgekeeELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEEdsisnlkLGTLNGSQEEMWQKT 1558
Cdd:TIGR02168 805 LD---------ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1559 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKF 1638
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL---------ELRLEGLEVRID 939
|
....*.
gi 1890284505 1639 NLKEEL 1644
Cdd:TIGR02168 940 NLQERL 945
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-562 |
7.96e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE---RIAALKNELRKEREQI 444
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEleeEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 445 lqqagkQRLE----LEQEIEKAKTEENYIrdRLALSLKENSRLENELLENAEKLAEYENLTNKL------QRNLENVLAE 514
Cdd:PRK05771 124 ------ERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEE 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1890284505 515 KFGDLDPSSAEFFlQEERLTQMRNEYERQCRVLQDQVDELQSELEEYR 562
Cdd:PRK05771 196 ELKKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELA 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
307-507 |
1.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 307 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNsihQAALASFKAEIRHLLERVDQVVREKE 384
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 385 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKE---RIAALKNELRKEREQILQ 446
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPnhpDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1890284505 447 QAGKQRLELEQEIEKAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRN 507
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVEVA 363
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-790 |
1.74e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 404 VDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAG--KQRLELEQEIEKAKTEENYIRDRLALSLKENS 481
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSepAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 482 RLENELLENAEKLAEYENLTNKLQRNlENVLAEKFGDLdpssaEFFLQEerLTQMRNEYERQCRVLQDQVDELQSELEEY 561
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQE-EEKLKERLEEL-----EEDLSS--LEQEIENVKSELKELEARIEELEEDLHKL 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 562 RAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLD 641
Cdd:TIGR02169 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 642 ETVVSCKKAQENMKqRHENETHTLE-------KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTH 714
Cdd:TIGR02169 858 NLNGKKEELEEELE-ELEAALRDLEsrlgdlkKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1890284505 715 LQEKLRLQHEMELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFhQEQLTSLVEKH-TLEKEelRKELLE 790
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA---LEPVNMLAIQEYEEV-LKRLDELKEKRaKLEEE--RKAILE 1007
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-955 |
2.04e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 315 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 394
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 395 KLKSLMASEvddhhaAIERRNEYNLRKLDEEYKERIAALKNELRKEREQilqqagkqrLELEQEIEKAKTEENYIRDRLA 474
Cdd:pfam02463 354 EEEEEEELE------KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE---------LELKSEEEKEAQLLLELARQLE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 475 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDEL 554
Cdd:pfam02463 419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 555 QSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEpEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVR 634
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 635 HYEKQLDETVVSCKK----------------------AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHE 692
Cdd:pfam02463 578 RKLRLLIPKLKLPLKsiavleidpilnlaqldkatleADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 693 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTS 772
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 773 LVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQ--KVTERCESALQSLEGRYRQELKDLQEQ 850
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVeeEKEEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 851 QREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVErqqLLQDLEDLRNVSETQQ 930
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE---LEEQKLKDELESKEEK 894
|
650 660
....*....|....*....|....*
gi 1890284505 931 SLLSDQILELKSSHKRELREREEVL 955
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEI 919
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
741-1596 |
2.20e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 741 EREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKEL--LEKHQRELQEGREKMETECNRRTSQIE--- 815
Cdd:TIGR02169 199 QLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLasLEEELEKLTEEISELEKRLEEIEQLLEeln 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 816 -----------AQFQSDCQKVT---ERCESALQSLEgryrQELKDLQEQQR---EEKSQWEFEKDELTQECAEAQ---EL 875
Cdd:TIGR02169 279 kkikdlgeeeqLRVKEKIGELEaeiASLERSIAEKE----RELEDAEERLAkleAEIDKLLAEIEELEREIEEERkrrDK 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 876 LKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQiLELKSSHKRELREREEVL 955
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAE-TRDELKDYREKLEKLKREINELKRELDRLQEE-LQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 956 CQAGAseQLASQRLE-RLEMEHDQERQEMMSKLLamenihkatcETADRERAEMSTEISRLQSKIKEMQQAtspLSMLQS 1034
Cdd:TIGR02169 433 EAKIN--ELEEEKEDkALEIKKQEWKLEQLAADL----------SKYEQELYDLKEEYDRVEKELSKLQRE---LAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1035 GCQVIGEEEVEGDGALSLLQQGEQ----LLEENGDVLLSLQRAHEQA---------VKENVKMATEISRLQQR------- 1094
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEVAagnrlnnvvVEDDAVAKEAIELLKRRkagratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1095 --LQKLEPGLVMSSCLDEP-ATEFFGNTAEQTEQFlqQNRTKQVEGVTRrhVLSDLEddEVRDLGstGTSSVQRQEVKIE 1171
Cdd:TIGR02169 578 lpLNKMRDERRDLSILSEDgVIGFAVDLVEFDPKY--EPAFKYVFGDTL--VVEDIE--AARRLM--GKYRMVTLEGELF 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1172 ESEASVEGFSelenseetRTESWELKNQISQLQEQLMMlcadcdraSEKKQDLlfdvsvlkkklkmleripeaspkykll 1251
Cdd:TIGR02169 650 EKSGAMTGGS--------RAPRGGILFSRSEPAELQRL--------RERLEGL--------------------------- 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1252 yedvSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFL----SLEKSYDEVKIENEGLNVLVLR 1327
Cdd:TIGR02169 687 ----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleELEEDLSSLEQEIENVKSELKE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1328 LQGKIEKLQESVVQrcdcclWEASLENLEIEPDGNIL-QLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKA 1406
Cdd:TIGR02169 763 LEARIEELEEDLHK------LEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1407 HEiawlhgtiqthqerprvQNQVILeenttllgFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgE 1486
Cdd:TIGR02169 837 EL-----------------QEQRID--------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK--K 889
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1487 KEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN------EEDSISNLKLGTLNGSQEEMWQKTET 1560
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRA 969
|
890 900 910
....*....|....*....|....*....|....*.
gi 1890284505 1561 VKQENAAVQKMVENLKKQISELKIKNQQLDLENTEL 1596
Cdd:TIGR02169 970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1537-1882 |
3.42e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1537 DSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTE 1616
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1617 MlcqkekepgnsaleerEQEKFNLKEELERckvqsstlvssLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcpDLS 1696
Cdd:TIGR02168 300 L----------------EQQKQILRERLAN-----------LERQLEELEAQLEELESKLDELAEELAELEE-----KLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1697 DFQQKISSVlsynEKLLKEKEALSEELNScvdklaKSSLLEHRIATMKQEQKSWEHQSASLKSQLvasqekvqnledtvq 1776
Cdd:TIGR02168 348 ELKEELESL----EAELEELEAELEELES------RLEELEEQLETLRSKVAQLELQIASLNNEI--------------- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1777 nvnlqmSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSwdkldhLMNEEQQLLWQEN 1856
Cdd:TIGR02168 403 ------ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE------RLEEALEELREEL 470
|
330 340
....*....|....*....|....*.
gi 1890284505 1857 ERLQTMVQNTKAELTHSREKVRQLES 1882
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLER 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-569 |
3.84e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS---------EVDDHHAAIERRNEyNLRKLD------ 423
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEA-ELERLDassddl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 424 EEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 503
Cdd:COG4913 688 AALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1890284505 504 LQRNLENvlaekfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLR 569
Cdd:COG4913 767 LRENLEE-------RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLE 825
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-982 |
3.88e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 389 DLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKeriaalKNELRKEREQILQQAGKQRLELEQEIEKAKTEENY 468
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK------AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 469 IRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQ 548
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 549 -DQVDELQSELEEYRaqgrvlrlplknspSEEVEANSGGIEPEHGLGSEECNPLNMSIEAElviEQMKEQHHRDICCLRL 627
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAK--------------KAEEERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKK 1291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 628 ELEDKVRHYEKQLDETVvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRH----EEEKKQ 703
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAK---KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEaeaaEEKAEA 1368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 704 LQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEE 783
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 784 LRKELLEKhqRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL-EGRYRQELKDLQEQQREEKSQWEFEK 862
Cdd:PTZ00121 1449 AKKKAEEA--KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdEAKKAAEAKKKADEAKKAEEAKKADE 1526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 863 DELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKS 942
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1890284505 943 SHKRELREREEVLCQAgasEQLASQRLERLEMEHDQERQE 982
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKA---EELKKAEEEKKKVEQLKKKEA 1643
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-857 |
3.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 649 KAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEMELK 728
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQKEELAELLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 729 ARLtQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECN 808
Cdd:COG4942 120 PPL-ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1890284505 809 RRTSQIEAQFQSDCQKVTErcesaLQSLEGRYRQELKDLQEQQREEKSQ 857
Cdd:COG4942 199 KLLARLEKELAELAAELAE-----LQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1545-1881 |
4.26e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1545 GTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKE 1624
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1625 PGNSalEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISS 1704
Cdd:TIGR02168 739 EAEV--EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE--ALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1705 VlsyNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSR 1784
Cdd:TIGR02168 815 L---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1785 MKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLswdkLDHLMNEEQQLLwqenERLQTMVQ 1864
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREK--LAQLELRLEGLEVRIDNL----QERLSEEYSLTL----EEAEALEN 961
|
330
....*....|....*..
gi 1890284505 1865 NTKAELTHSREKVRQLE 1881
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLE 978
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
853-1802 |
4.85e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 853 EEKSQWEF-EKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDledlRNVSETQQS 931
Cdd:TIGR00606 158 QEDSNWPLsEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRD----QITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 932 LLSDQILELKSSHKRELREREEVLCQAGAS-----EQLASQRLERLEMEHDQERQEMM---------SKLLAMENIHKAT 997
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNRLKEIEHNLSKimkldNEIKALKSRKKQMEKDNSELELKmekvfqgtdEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 998 CETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQL------LEENGDVLLSLQ 1071
Cdd:TIGR00606 314 VREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgFERGPFSERQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1072 RAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLqqnrTKQVEGVtrRHVLSDLEDDE 1151
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL----EKKQEEL--KFVIKELQQLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1152 vrdlgsTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVL 1231
Cdd:TIGR00606 468 ------GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1232 KKKLKMLERIpeaspkykllYEDVSRENDCLQEELrmmetrydEALENNKELTAEVFRLQDELKKMEEvteTFLSLEKSY 1311
Cdd:TIGR00606 542 KDKMDKDEQI----------RKIKSRHSDELTSLL--------GYFPNKKQLEDWLHSKSKEINQTRD---RLAKLNKEL 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1312 DEVKIENEGLNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEP-----------------DGNILQLNQTLEECV 1374
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIeksskqramlagatavySQFITQLTDENQSCC 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1375 PRVRSVHHVIEECKQENQYLEGNTQLL-EKVKAHEiawlhgTIQTHQERPRVQNQVILEENTTLLGFQDKhfqhqatiaE 1453
Cdd:TIGR00606 681 PVCQRVFQTEAELQEFISDLQSKLRLApDKLKSTE------SELKKKEKRRDEMLGLAPGRQSIIDLKEK---------E 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1454 LELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKammHDLQITCSEMQQKVELLRYESEKLQQENSILrneittl 1533
Cdd:TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA---KVCLTDVTIMERFQMELKDVERKIAQQAAKL------- 815
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1534 neEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQR 1613
Cdd:TIGR00606 816 --QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1614 LTEMlcqkekEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQE---NHLLKDELEKMKQLH 1690
Cdd:TIGR00606 894 STEV------QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKvknIHGYMKDIENKIQDG 967
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1691 RCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNscvdklakssllehriaTMKQEQKSWEHQSASLKSQLV--ASQEKV 1768
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMR-----------------LMRQDIDTQKIQERWLQDNLTlrKRENEL 1030
|
970 980 990
....*....|....*....|....*....|....
gi 1890284505 1769 QNLEDTVQNVNLQMSRMksdlRVTQQEKEALKQE 1802
Cdd:TIGR00606 1031 KEVEEELKQHLKEMGQM----QVLQMKQEHQKLE 1060
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1222-1959 |
5.09e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1222 QDLLFDvsvLKKKLKMLERIPEASPKYKLLYEDVSR-ENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEV 1300
Cdd:TIGR02168 192 EDILNE---LERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1301 TET----FLSLEKSYDEVKIENEGLNVLVLRLQGKIEKLQESvvqrcdcclwEASLENLEIEPDGNILQLNQTLEECVPR 1376
Cdd:TIGR02168 269 LEElrleVSELEEEIEELQKELYALANEISRLEQQKQILRER----------LANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1377 VRSVHHVIEECKQENQYLEGntqllekvkahEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELEL 1456
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1457 EKTKLQELTRKLKERVTILVKQ---KDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTL 1533
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKleeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1534 ------------NEEDSISNLKLGTLNGSQ--------------EEMWQKT-ETVKQE--NAAVQKMVENLKKQISELKI 1584
Cdd:TIGR02168 488 qarldslerlqeNLEGFSEGVKALLKNQSGlsgilgvlselisvDEGYEAAiEAALGGrlQAVVVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1585 KNQQ------LDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEK----------------EPGNSALEEREQEKFN--- 1639
Cdd:TIGR02168 568 NELGrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggvlvvDDLDNALELAKKLRPGyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1640 --LKEEL---------ERCKVQSSTLvsSLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcpDLSDFQQKISSVlsy 1708
Cdd:TIGR02168 648 vtLDGDLvrpggvitgGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAELRK-----ELEELEEELEQL--- 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1709 nEKLLKEKEALSEELNSCVDKL-AKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS 1787
Cdd:TIGR02168 718 -RKELEELSRQISALRKDLARLeAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1788 DLRVTQQEKEALKQEVMSLHKQLQNAGgkswapeiathpSGLHNQQKRLSwDKLDHLMNEEQQLLwQENERLqtmvqntk 1867
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLR------------ERLESLERRIA-ATERRLEDLEEQIE-ELSEDI-------- 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1868 AELTHSREKVRQLESNLLPKHQKHLNpsgTMNPTEQEKLSLKRECDQFQKEQSPANRKVS----QMNSLEQELETIHLEN 1943
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLN---ERASLEEALALLRSELEELSEELRELESKRSelrrELEELREKLAQLELRL 931
|
810
....*....|....*.
gi 1890284505 1944 EGLKKKQVKLDEQLME 1959
Cdd:TIGR02168 932 EGLEVRIDNLQERLSE 947
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
1508-1729 |
8.34e-05 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 47.43 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1508 KVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEemwqkTETVKQENAAVQK-----MVENLKKQISEL 1582
Cdd:COG5059 351 EIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKE-----TETLKSRIDLIMKsiisgTFERKKLLKEEG 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1583 KIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAEL 1662
Cdd:COG5059 426 WKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLN--KLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSS 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1890284505 1663 SEVKIQTHIVQQENHLLKDELEkmkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDK 1729
Cdd:COG5059 504 RSHSKFRDHLNGSNSSTKELSL---------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDV 561
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
381-820 |
9.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 9.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRKEREQILQQagKQRLELEQEIE 460
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 461 KAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRnLENVLAEKFGDLDPSSAE----FFLQEERLTQM 536
Cdd:COG4717 136 ALEAELAELPERLE-------ELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEEelqdLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 537 RNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQmke 616
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG--- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 617 qhhrdICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcr 696
Cdd:COG4717 285 -----LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA--- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 697 hEEEKKQLQVK-LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVE 775
Cdd:COG4717 357 -EELEEELQLEeLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1890284505 776 KHTLEKEELRKElLEKHQRELQEGREKMET-ECNRRTSQIEAQFQS 820
Cdd:COG4717 436 ELEEELEELEEE-LEELREELAELEAELEQlEEDGELAELLQELEE 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1448-1669 |
1.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1448 QATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKE-EELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSIL 1526
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQlAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1527 RNEITTLNEE-----------DSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTE 1595
Cdd:COG4942 96 RAELEAQKEElaellralyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1890284505 1596 LSQKNSQNQEKLQELNQRltemlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQT 1669
Cdd:COG4942 176 LEALLAELEEERAALEAL------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1147-1731 |
1.16e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1147 LEDDEVRDlgstgtsSVQRQEVKIEESEASVEGFSEL--------ENSEETRTESWELKNQISQLQEQLMMLCADCDRAS 1218
Cdd:PRK03918 141 LESDESRE-------KVVRQILGLDDYENAYKNLGEVikeikrriERLEKFIKRTENIEELIKEKEKELEEVLREINEIS 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1219 EKKQDLLFDVSVLKKKLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVfrlqDELKKME 1298
Cdd:PRK03918 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV----KELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1299 EVTETFLSLEKSYDEVKIENEGLNVLVLRL-------------------------------QGKIEKLQESVVQRCDCCL 1347
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLeeeingieerikeleekeerleelkkklkelEKRLEELEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1348 WEASLENLEIEPDG-NILQLNQTLEECVPRVRSVHHVIEECKQENQYLEG-----NTQLLEKVKAHEIAWLHGTIQTHQE 1421
Cdd:PRK03918 370 KKEELERLKKRLTGlTPEKLEKELEELEKAKEEIEEEISKITARIGELKKeikelKKAIEELKKAKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1422 RPRVQNQVILEenttllgfqdkhfqhqatIAELELEKTKLQELTRKLKERV----TILVKQKDVLSHGEKEEELKAMMHD 1497
Cdd:PRK03918 450 RKELLEEYTAE------------------LKRIEKELKEIEEKERKLRKELreleKVLKKESELIKLKELAEQLKELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1498 LQ-ITCSEMQQKVEllryESEKLQQENSILRNEITTLNEEDSisnlKLGTLNGSQEEMWQKTETVKQENAAVQKMVEN-- 1574
Cdd:PRK03918 512 LKkYNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEEELAELLKELEElg 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1575 -----------------------LKKQISELKIKNQQLDLENTELSQKnsqnQEKLQELNQRLtEMLCQKEKEPGNSALE 1631
Cdd:PRK03918 584 fesveeleerlkelepfyneyleLKDAEKELEREEKELKKLEEELDKA----FEELAETEKRL-EELRKELEELEKKYSE 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1632 EREQEKFNLKEELERckvqsstLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEK 1711
Cdd:PRK03918 659 EEYEELREEYLELSR-------ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKALERVEELREK 729
|
650 660
....*....|....*....|
gi 1890284505 1712 LLKEKEALSEELNSCVDKLA 1731
Cdd:PRK03918 730 VKKYKALLKERALSKVGEIA 749
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1270-1810 |
1.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1270 ETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEGLNVLVLRLQGKIEKLqESVVQRCDCClwE 1349
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-EKEVKELEEL--K 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1350 ASLENLEIEpdgnILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEiawlhgtiqthqerprvqnqv 1429
Cdd:PRK03918 238 EEIEELEKE----LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA--------------------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1430 ilEENTTLLGFQDKHFQhqaTIAELELEKTKLQELTRKLKERVtilvkqKDVLSHGEKEEELKAMMHDLQITCSEMQQKV 1509
Cdd:PRK03918 293 --EEYIKLSEFYEEYLD---ELREIEKRLSRLEEEINGIEERI------KELEEKEERLEELKKKLKELEKRLEELEERH 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1510 ELLRYESEKLQQENSiLRNEITTLNEEDSISNLKLgtLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQL 1589
Cdd:PRK03918 362 ELYEEAKAKKEELER-LKKRLTGLTPEKLEKELEE--LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1590 DLENTELSQKNSQN-------------------QEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQ 1650
Cdd:PRK03918 439 PVCGRELTEEHRKElleeytaelkriekelkeiEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1651 SstlVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALS----EELNSC 1726
Cdd:PRK03918 519 E---LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK--KLAELEKKLDELEEELAELLKELEELGfesvEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1727 VDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSdlRVTQQEKEALKQEVMSL 1806
Cdd:PRK03918 594 LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLEL 671
|
....
gi 1890284505 1807 HKQL 1810
Cdd:PRK03918 672 SREL 675
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
362-882 |
1.94e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 362 LASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmasevddhhaaiERRNEY-NLRKLDEEYKERIAALKNELRKE 440
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELK--------------EKAEEYiKLSEFYEEYLDELREIEKRLSRL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 441 REQI--LQQAGKQRLELEQEIEKAKTEENYIRDRLAlSLKENSRLENELLEnaeKLAEYENLTNKLQRNLENVLAEKFGD 518
Cdd:PRK03918 320 EEEIngIEERIKELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKA---KKEELERLKKRLTGLTPEKLEKELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 519 LDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEhglgSEEC 598
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE----LKEI 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 599 NPLNMSIEAELVIEQMKEQHHRDICCLRlELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAE 678
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKKESELIKLK-ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 679 LQGqaavlkeahheatcrHEEEKKQLQVKLEEEKTHLQEKLRlqhemelkarltqaqasfEREREGLQSSAWTEEKVrgl 758
Cdd:PRK03918 551 LEE---------------LKKKLAELEKKLDELEEELAELLK------------------ELEELGFESVEELEERL--- 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 759 tQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 838
Cdd:PRK03918 595 -KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1890284505 839 RY---RQELKDLQEQQREEKSQWEFEKDELT--QECAEAQELLKETLKR 882
Cdd:PRK03918 674 ELaglRAELEELEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALER 722
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
696-1093 |
2.28e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 696 RHEEEKKQLQ---VKLEEEKTHLQEKLRLQH----EM--ELkARLTQAQASFEREregLQSSAWTEEKVRGLTQELE--Q 764
Cdd:COG3096 275 RHANERRELSeraLELRRELFGARRQLAEEQyrlvEMarEL-EELSARESDLEQD---YQAASDHLNLVQTALRQQEkiE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 765 FHQEQLTSLVEKhTLEKEELRKELLEKHQrELQEGREKMETECNRRTSQIeaqfqSDCQKVTErcesALQSLEGRYRQEL 844
Cdd:COG3096 351 RYQEDLEELTER-LEEQEEVVEEAAEQLA-EAEARLEAAEEEVDSLKSQL-----ADYQQALD----VQQTRAIQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 845 kdlqeqQREEKSQWEFEKDELTQECAEA-QELLKEtlKREKTTSLVLTQEREM---------LEKTYkEHLNSMV--VER 912
Cdd:COG3096 420 ------QALEKARALCGLPDLTPENAEDyLAAFRA--KEQQATEEVLELEQKLsvadaarrqFEKAY-ELVCKIAgeVER 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 913 -------QQLLQDLEDLRNVSETQQSL---LSDqiLELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQE 982
Cdd:COG3096 491 sqawqtaRELLRRYRSQQALAQRLQQLraqLAE--LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 983 mmskllameniHKATCETADRERAEMSTEISRLQSKIKEMQQ-------ATSPLSML--QSGCQVIGEEEVegdgalslL 1053
Cdd:COG3096 569 -----------LEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaAQDALERLreQSGEALADSQEV--------T 629
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1890284505 1054 QQGEQLLEEngDVLLSLQRAHEQAVKEnvKMATEISRLQQ 1093
Cdd:COG3096 630 AAMQQLLER--EREATVERDELAARKQ--ALESQIERLSQ 665
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
628-877 |
2.64e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 628 ELEDKVRHYEKQLDEtvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAvlkeahheatcRHEEEKKQLQVK 707
Cdd:pfam01576 191 DLEERLKKEEKGRQE--------LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA-----------KKEEELQAALAR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 708 LEEE---KTHLQEKLRlqhemELKARLTQAQASFEREReglQSSAWTEEKVRGLTQELEQFHQEQltslveKHTLEKEEL 784
Cdd:pfam01576 252 LEEEtaqKNNALKKIR-----ELEAQISELQEDLESER---AARNKAEKQRRDLGEELEALKTEL------EDTLDTTAA 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 785 RKELLEKHQRELQEGREKMETEcnrrTSQIEAQFQSDCQKVTERCEsalqslegryrqELKDLQEQQREEKSQWEFEKDE 864
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEE----TRSHEAQLQEMRQKHTQALE------------ELTEQLEQAKRNKANLEKAKQA 381
|
250
....*....|...
gi 1890284505 865 LTQECAEAQELLK 877
Cdd:pfam01576 382 LESENAELQAELR 394
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1592-1838 |
3.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1592 ENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHI 1671
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIR----ALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1672 VQQENHLLKDELEKMK----QLHRCPDL------SDFQQKISSvLSYNEKLLKEKEALSEELNSCVDKLAkssllehria 1741
Cdd:COG4942 95 LRAELEAQKEELAELLralyRLGRQPPLalllspEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1742 tmkQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPE 1821
Cdd:COG4942 164 ---ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*..
gi 1890284505 1822 IATHPSGLHNQQKRLSW 1838
Cdd:COG4942 241 ERTPAAGFAALKGKLPW 257
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
606-1521 |
3.42e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 606 EAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 685
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 686 LKEahheatcrHEEEKKQLQVKLEEEKTHLQEKLRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF 765
Cdd:pfam02463 249 EQE--------EIESSKQEIEKEEEKLAQVLKENKE--EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 766 HQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELK 845
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 846 DLQEQQREEKSQWEFEKDELTQECAEAQELLKETLkrEKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNv 925
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE--EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 926 sETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLeMEHDQERQEMMSKLLAMENIHKATCETADRER 1005
Cdd:pfam02463 476 -ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG-GRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1006 AEMSTEISRLQSKIKEMQQATSPLSmlqsgcQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMA 1085
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGAR------KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1086 TEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTKQVEgvtrrhvlsdleddevrdlgstgtssVQR 1165
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI--------------------------QEL 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1166 QEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDvsvlKKKLKMLEripEAS 1245
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQ----KIDEEEEE---EEK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1246 PKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEvtetflSLEKSYDEVKIENEGLNVLV 1325
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE------ELKEEAELLEEEQLLIEQEE 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1326 LRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVK 1405
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1406 AHEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVtilvkqkDVLSHG 1485
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV-------NLMAIE 981
|
890 900 910
....*....|....*....|....*....|....*.
gi 1890284505 1486 EKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQ 1521
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1446-1795 |
3.59e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 45.71 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1446 QHQATIAELELEKTKLQELTRklkervtilVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVEL-LRYESEKLQQENS 1524
Cdd:pfam15818 68 QLQMKMCALEEEKGKYQLATE---------IKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLhLLAKEDHHKQLNE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1525 ILRNEITTLNeedsisnlKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELK--IKNQQLDL----------- 1591
Cdd:pfam15818 139 IEKYYATITG--------QFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKkeLKKVTSDLikskvtcqykm 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1592 --ENTELSQKnsqnQEKLQELNQRLT-EMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQ 1668
Cdd:pfam15818 211 geENINLTIK----EQKFQELQERLNmELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKEN 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1669 THIVQQENHLLKdelEKMKQlhrcpdlsdFQQKISSVLSYNEKLL----KEKEALSEELNSCVDKLakSSLLEHRIATMK 1744
Cdd:pfam15818 287 NQTLERDNELQR---EKVKE---------NEEKFLNLQNEHEKALgtwkKHVEELNGEINEIKNEL--SSLKETHIKLQE 352
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1890284505 1745 QEQKSWEHQSaslksqlVASQEKVQNLEDtVQNVNLQMSRMKSDLRVTQQE 1795
Cdd:pfam15818 353 HYNKLCNQKK-------FEEDKKFQNVPE-VNNENSEMSTEKSENLIIQKY 395
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
666-798 |
6.99e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 666 EKQISDLKNEiAELQGQAAVL--KEAHHEATCRHEEEKKQLQVKLEE-EKTHLQEKLRLQHEMELkarLTQAQASFERER 742
Cdd:PRK12704 41 KRILEEAKKE-AEAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKlEKRLLQKEENLDRKLEL---LEKREEELEKKE 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1890284505 743 EGLQSsawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 798
Cdd:PRK12704 117 KELEQ---KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-983 |
7.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 780 EKEELRKELlEKHQRELQEGREKMETECNRRTSqIEAQFQSDCQKVTERcESALQSLEGRY---RQELKDLQEQQREEKS 856
Cdd:COG4942 21 AAAEAEAEL-EQLQQEIAELEKELAALKKEEKA-LLKQLAALERRIAAL-ARRIRALEQELaalEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 857 QWEFEKDELTQECAEAQellkeTLKREKTTSLVLTQE-------REMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQ 929
Cdd:COG4942 98 ELEAQKEELAELLRALY-----RLGRQPPLALLLSPEdfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1890284505 930 QSLLSDQILELKSSHKR---ELREREEVLCQAGASEQLASQRLERLEMEHDQERQEM 983
Cdd:COG4942 173 RAELEALLAELEEERAAleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
428-561 |
8.22e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 428 ERIAALK-NELRKEREQILQQAGKQRLELEQEIEKAKTEENyirdrlalsLKENSRLENELlenAEKLAEYENLTNKLQR 506
Cdd:PRK12704 26 KKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI---------HKLRNEFEKEL---RERRNELQKLEKRLLQ 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1890284505 507 NlENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEY 561
Cdd:PRK12704 94 K-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1579-1928 |
9.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1579 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQE-----KFNLKEELERCKVQSST 1653
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1654 LVSSLEAELSEVKIQTHIVQQENHLLKDELEKMkqlhrcpdlsdfqqkissvlsyNEKLLKEKEALSEELNSCVDKL-AK 1732
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL----------------------NKKIKDLGEEEQLRVKEKIGELeAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1733 SSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1812
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1813 AGGKswapeiathpsgLHNQQKRLswDKLDHLMNE---EQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPK-- 1887
Cdd:TIGR02169 383 TRDE------------LKDYREKL--EKLKREINElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKal 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1890284505 1888 -----HQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQ 1928
Cdd:TIGR02169 449 eikkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
477-1207 |
1.01e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 477 LKENSRLENELLENAEKLAEYENLTNKLQRNLEnvlaEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQS 556
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKK----SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 557 ELEEYRAQGRVLRLPLKNSPSE--------EVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMK--EQHHRDICCLR 626
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQlkkqqllkQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 627 LELEDKVRHYEKQLDETVVSCKKAQENMKQRHENEThtlekqisdlkneiaeLQGQAAVLKEAHHEATCRHEEEKKQLQV 706
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT----------------LHSQEIHIRDAHEVATSIREISCQQHTL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 707 -----KLEEEKTHLQEKLRLQHEMELKARLTQAQASFE-REREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLE 780
Cdd:TIGR00618 378 tqhihTLQQQKTTLTQKLQSLCKELDILQREQATIDTRtSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 781 KEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEF 860
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 861 EKDELTQECAEAQ--------ELLKETLKREKTTSLVLTQEREmlekTYKEHLNSMVVERQQLLQDLEdlRNVSETQQSL 932
Cdd:TIGR00618 538 AQLETSEEDVYHQltserkqrASLKEQMQEIQQSFSILTQCDN----RSKEDIPNLQNITVRLQDLTE--KLSEAEDMLA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 933 LSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEmmSKLLAMENIHKATCETADRERAEMSTEI 1012
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR--EHALSIRVLPKELLASRQLALQKMQSEK 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1013 SRLQSKIKEMQQAtspLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATEISrlq 1092
Cdd:TIGR00618 690 EQLTYWKEMLAQC---QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAH--- 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1093 qrlQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQ-QNRTKQVEGVTRRHVLSDLEDDEVRDlgSTGTSSVQRQEVKIE 1171
Cdd:TIGR00618 764 ---FNNNEEVTAALQTGAELSHLAAEIQFFNRLREEdTHLLKTLEAEIGQEIPSDEDILNLQC--ETLVQEEEQFLSRLE 838
|
730 740 750
....*....|....*....|....*....|....*..
gi 1890284505 1172 ESEASV-EGFSELENSEETRTESWELKNQISQLQEQL 1207
Cdd:TIGR00618 839 EKSATLgEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
752-1315 |
1.14e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 752 EEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEaqfqsDCQKVTERCES 831
Cdd:PRK03918 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE-----ELEEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 832 aLQSLEGRYRqELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtyKEHLNSMVVE 911
Cdd:PRK03918 288 -LKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR--LEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 912 RQQLLQDLEDLRNVSETQQSLLSDQIL-ELKSSHKRELREREEvlcqagaseqlasqrLERLEMEHDQERQEMMSKLLAM 990
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEkELEELEKAKEEIEEE---------------ISKITARIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 991 ENIHKA--TCETADRE---------RAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQL 1059
Cdd:PRK03918 429 EELKKAkgKCPVCGRElteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1060 LEE----NGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPglvmsscldepatefFGNTAEQTEQFLQQNRTKqv 1135
Cdd:PRK03918 509 EEKlkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------------LKKKLAELEKKLDELEEE-- 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1136 egvtrrhvLSDLEddevRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEEtrtESWELKNQISQLQEQLmmlcadcD 1215
Cdd:PRK03918 572 --------LAELL----KELEELGFESVEELEERLKELEPFYNEYLELKDAEK---ELEREEKELKKLEEEL-------D 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1216 RASEKKQDLLFDVSVLKKKLKMLERI--PEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEvfrlqde 1293
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE------- 702
|
570 580
....*....|....*....|..
gi 1890284505 1294 LKKMEEVTETFLSLEKSYDEVK 1315
Cdd:PRK03918 703 LEEREKAKKELEKLEKALERVE 724
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1446-1961 |
1.32e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1446 QHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSI 1525
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT--EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1526 LRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQE 1605
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1606 KLQELNQRLTEM---LCQKEKE--------PGNSA----LEEREQEKFNLKEELERCKVQSSTLV-SSLEAELSEVKIQT 1669
Cdd:TIGR02169 477 EYDRVEKELSKLqreLAEAEAQaraseervRGGRAveevLKASIQGVHGTVAQLGSVGERYATAIeVAAGNRLNNVVVED 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1670 HIVQQEN-HLLKDE---------LEKMKQLHRCP-------------DLSDFQQKISSVLSY------------------ 1708
Cdd:TIGR02169 557 DAVAKEAiELLKRRkagratflpLNKMRDERRDLsilsedgvigfavDLVEFDPKYEPAFKYvfgdtlvvedieaarrlm 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1709 -------------------------NEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWEHQSASLKSQLVA 1763
Cdd:TIGR02169 637 gkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERLEG---LKRELSSLQSELRRIENRLDELSQELSD 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1764 SQEKV-------QNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKqlqnaggkswapEIATHPSGLHNQQKRL 1836
Cdd:TIGR02169 714 ASRKIgeiekeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA------------RIEELEEDLHKLEEAL 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1837 SwdkldhlmNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQ 1916
Cdd:TIGR02169 782 N--------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1890284505 1917 KEQSPANRKVSQMNS----LEQELETIHLENEGLKKKQVKLDEQLMEMQ 1961
Cdd:TIGR02169 854 KEIENLNGKKEELEEeleeLEAALRDLESRLGDLKKERDELEAQLRELE 902
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1736-1937 |
1.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1736 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--- 1812
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1813 ---AGGKSWAPEIATHPSGLHNQQKRLSWdkLDHLMNEEQQLLwQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQ 1889
Cdd:COG4942 112 alyRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1890284505 1890 KhlnpsgtmnpTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELE 1937
Cdd:COG4942 189 A----------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
655-983 |
1.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 655 KQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATcRHEEEK---KQLQVKLEEEKTHLQEklrLQHEM-ELKAR 730
Cdd:PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET-RETLSTlslRQLESRLAQTLDQLQN---AQNDLaEYNSQ 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 731 LTQAQASFEREReglqsSAWTEEKVRglTQELEQfhqeQLTSLvekhTLEKEELRKELLEKHQRELQEGREKMETecNRR 810
Cdd:PRK11281 151 LVSLQTQPERAQ-----AALYANSQR--LQQIRN----LLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDL--QRK 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 811 TSQIEAQFQSDCQKvtERCESALQSleGRYRQELKDLQE---QQREEKSQWEFEKDELTQECAEAQEllKETLKREKTTS 887
Cdd:PRK11281 214 SLEGNTQLQDLLQK--QRDYLTARI--QRLEHQLQLLQEainSKRLTLSEKTVQEAQSQDEAARIQA--NPLVAQELEIN 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 888 LVLTQerEMLEKTykEHLNSMVverQQLLQDLEDLRNVSETQQSlLSDQILELKSS--HKRELREREEVLCQAGASEQLA 965
Cdd:PRK11281 288 LQLSQ--RLLKAT--EKLNTLT---QQNLRVKNWLDRLTQSERN-IKEQISVLKGSllLSRILYQQQQALPSADLIEGLA 359
|
330 340
....*....|....*....|..
gi 1890284505 966 SQ----RLERLEMehDQERQEM 983
Cdd:PRK11281 360 DRiadlRLEQFEI--NQQRDAL 379
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
703-991 |
1.54e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 43.78 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 703 QLQVKLEEEKTHLQEK-----LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 777
Cdd:pfam15818 236 ELNKKINEEITHIQEEkqdiiISFQHMQQLLQQQTQANTEMEAELKALKENNQTLERDNELQREKVKENEEKFLNLQNEH 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 778 -----TLEK--EELRKEL---------LEKHQRELQEGREKMeteCNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYR 841
Cdd:pfam15818 316 ekalgTWKKhvEELNGEIneiknelssLKETHIKLQEHYNKL---CNQKKFEEDKKFQNVPEVNNENSEMSTEKSENLII 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 842 QelKDLQEQQREEKSQWEFEKDeltqecaeaQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVveRQQLLQDLED 921
Cdd:pfam15818 393 Q--KYNSEQEIREENTKSFCSD---------TEYRETEKKKGPPVEEIIIEDLQVLEKSFKNEIDTSV--PQDKNQSEIS 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1890284505 922 LRNVSETQQSLLS-DQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAME 991
Cdd:pfam15818 460 LSKTLCTDKDLISqGQTLNVTDFRKSVTTEIKDKLCLEKDNGCSEFKSPNNLFLVADQSIETEKIHLESTE 530
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
381-924 |
1.67e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALkNELRKEREQI---LQQAGKQRLEL 455
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQI-SELKKQNNQLkdnIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 456 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEerltq 535
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQ----- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 536 mrneyERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANsggiepehglgsEECNPLNMSIEAELVIEQMK 615
Cdd:TIGR04523 320 -----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ------------RELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 616 EQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATC 695
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 696 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKarlTQAQASFEREREGLqssawtEEKVRGLTQEleqfhQEQLTSLVE 775
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSK---EKELKKLNEEKKEL------EEKVKDLTKK-----ISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 776 KHTLEKEELRKELlekhqRELQEGREKMETECNRrtSQIEAQFQSDCQKVTERCESalqslegryRQELKDLQEQQREEK 855
Cdd:TIGR04523 528 KLESEKKEKESKI-----SDLEDELNKDDFELKK--ENLEKEIDEKNKEIEELKQT---------QKSLKKKQEEKQELI 591
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890284505 856 SQWEFEKDELTQECAEaQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRN 924
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEE-KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
753-954 |
1.99e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 753 EKVRGLTQELEQFHQE--QLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvTERCE 830
Cdd:COG4913 255 EPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL--------REELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 831 SALQSLEGRYRQELKDLQEQQReeksQWEFEKDELTQECAEAQELLketlkreKTTSLVLTQEREMLEKTYKEHlnsmvv 910
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIE----RLERELEERERRRARLEALL-------AALGLPLPASAEEFAALRAEA------ 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1890284505 911 erQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEV 954
Cdd:COG4913 390 --AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
369-785 |
2.15e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 369 IRHLLERVDQVVREKEKLRSDLdkaEKLKSLMASEVDDHHAAIERRNEyNLRKLD------EEYKERIAALKNELRKER- 441
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEALL---KAMKSECQGQMERQMAAIQGKNE-SLEKVSsltaqlESTKEMLRKVVEELTAKKm 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 442 -----EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE--LLENAE--------KLAEYENLTNKLQR 506
Cdd:pfam15921 490 tlessERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdHLRNVQtecealklQMAEKDKVIEILRQ 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 507 NLENvLAEKFGDLDPSSAEFFLQEERLTQMRNEYE---RQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN 583
Cdd:pfam15921 570 QIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 584 SGGIEPEHGLGSEECNPLN----MSIEAELVIEQMKEQHHrdicclrlELEDKVRHYEKQLDETVVSCKKAQENMKQRHE 659
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNelnsLSEDYEVLKRNFRNKSE--------EMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 660 NETHT------LEKQISDLKNEIAELQGQAAVLKEAHHEATCRH---EEEKKQLQVKLE---EEKTHLQEKLRLQHEMEL 727
Cdd:pfam15921 721 SDGHAmkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKhflKEEKNKLSQELStvaTEKNKMAGELEVLRSQER 800
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1890284505 728 KARLTQAQASFEREREGLQSSAwteekvrglTQELEQFHQEQLTSLVEKHTLEKEELR 785
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAE---------CQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1455-1646 |
2.53e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1455 ELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN 1534
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1535 EEdsisnlklgtlngsqEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQrl 1614
Cdd:PTZ00121 1696 KE---------------AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-- 1758
|
170 180 190
....*....|....*....|....*....|..
gi 1890284505 1615 temLCQKEKEPGNSALEEREQEKFNLKEELER 1646
Cdd:PTZ00121 1759 ---IAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
629-854 |
2.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 629 LEDKVRHYEKQLDEtvvsckkAQENMK--QRHENETHTLEKQISDLKNEIAelqgQAAVLKEAHHEATCRHEEEKKQL-- 704
Cdd:COG3096 891 LADRLEELREELDA-------AQEAQAfiQQHGKALAQLEPLVAVLQSDPE----QFEQLQADYLQAKEQQRRLKQQIfa 959
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 705 ---------------QVKLEEEKTHLQEKLRlqhemelkARLTQAQASFEREREglqssawteeKVRGLTQELEQFHQEq 769
Cdd:COG3096 960 lsevvqrrphfsyedAVGLLGENSDLNEKLR--------ARLEQAEEARREARE----------QLRQAQAQYSQYNQV- 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 770 LTSLVEKHtlekeELRKELLEKHQRELQE----GREKMETECNRRTSQIEAQFQSDCQKVTE------RCESALQSLEGR 839
Cdd:COG3096 1021 LASLKSSR-----DAKQQTLQELEQELEElgvqADAEAEERARIRRDELHEELSQNRSRRSQlekqltRCEAEMDSLQKR 1095
|
250
....*....|....*
gi 1890284505 840 YRQELKDLQeQQREE 854
Cdd:COG3096 1096 LRKAERDYK-QEREQ 1109
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1556-1802 |
3.33e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1556 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQK---NSQNQEKLQELNQRLTEMLCQKEkepgnsaLEE 1632
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKfgrSLKAKKRFSLLKKETIYLQSAQR-------VEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1633 REQEKFNLKEELERckVQSSTLVSS-LEAELSEVKIQTHIVQQENHLLKDELEKM-KQLHRCPDLSDFQQKISSVLSYNE 1710
Cdd:COG5022 880 AERQLQELKIDVKS--ISSLKLVNLeLESEIIELKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPSIEYVKLPELN 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1711 KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvNLQMSRMKSDLR 1790
Cdd:COG5022 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL----PVEVAELQSASK 1033
|
250
....*....|..
gi 1890284505 1791 VTQQEKEALKQE 1802
Cdd:COG5022 1034 IISSESTELSIL 1045
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1457-1966 |
3.49e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1457 EKTKLQELTRKLKERVTILVKQKdvLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEE 1536
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1537 DSISNLKLGTLNGSQEEMWQKTETVKQENAAvQKMVENLKKQISELKIKNQQldLENTELSQKNSQNQEKLQELNQRLTE 1616
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEA-KKKAEEDKKKADELKKAAAA--KKKADEAKKKAEEKKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1617 MlcQKEKEPGNSALEEREQEKFNLKEElERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLS 1696
Cdd:PTZ00121 1443 A--KKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1697 dfQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ--KSWEHQSASLKSQLVASQEKVQNLEDT 1774
Cdd:PTZ00121 1520 --EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEakKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1775 VQNVNLQMSRMKSDLRVTQQEK---------EALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLSWDKLDHLM 1845
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKikaeelkkaEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1846 NEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKhLNPSGTMNPTEQEKLSL-----KRECDQFQKEQS 1920
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKeaeedKKKAEEAKKDEE 1754
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1890284505 1921 PANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRST 1966
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
435-1024 |
3.95e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 435 NELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAE 514
Cdd:TIGR00606 304 NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFE 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 515 KFGDLDPSSAEFF--------------------------LQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVL 568
Cdd:TIGR00606 384 RGPFSERQIKNFHtlvierqedeaktaaqlcadlqskerLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 569 RlPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSC 647
Cdd:TIGR00606 464 Q-QLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 648 KKAQE-----NMKQRHENET-----------------HTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcRHEEEKKQLQ 705
Cdd:TIGR00606 543 DKMDKdeqirKIKSRHSDELtsllgyfpnkkqledwlHSKSKEINQTRDRLAKLNKELASLEQNKNHI--NNELESKEEQ 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 706 VKLEEEK-------THLQEKL-----RLQHEMELKARLTQAQASFEREREGL---------------QSSAWTEEKVRGL 758
Cdd:TIGR00606 621 LSSYEDKlfdvcgsQDEESDLerlkeEIEKSSKQRAMLAGATAVYSQFITQLtdenqsccpvcqrvfQTEAELQEFISDL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 759 TQELEQF--HQEQLTSLVEKHTLEKEEL------RKELLEKHQRELQEGREKME---TECNRRTSQIEAQ---------- 817
Cdd:TIGR00606 701 QSKLRLApdKLKSTESELKKKEKRRDEMlglapgRQSIIDLKEKEIPELRNKLQkvnRDIQRLKNDIEEQetllgtimpe 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 818 --FQSDCQK---VTERCESALQSLEGRYRQELKDLQ--------EQQREEKSQWEFEKDELTQECAEAQELLKEtlkREK 884
Cdd:TIGR00606 781 eeSAKVCLTdvtIMERFQMELKDVERKIAQQAAKLQgsdldrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQD---QQE 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 885 TTSLVLTQEREMleKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSD---QILELKSSHKRELREREEVLCQAGAS 961
Cdd:TIGR00606 858 QIQHLKSKTNEL--KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDakeQDSPLETFLEKDQQEKEELISSKETS 935
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1890284505 962 EQLAsqrlerlEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQ 1024
Cdd:TIGR00606 936 NKKA-------QDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEK 991
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1455-1718 |
4.51e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1455 ELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN 1534
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLA--SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1535 EE--DSISNLKlGTLNGSQEEMWQKTETVKQ---ENAAVQKMVENLKKQISELKIKN---------------------QQ 1588
Cdd:TIGR02169 297 GEleAEIASLE-RSIAEKERELEDAEERLAKleaEIDKLLAEIEELEREIEEERKRRdklteeyaelkeeledlraelEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1589 LDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQ 1668
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINEL--KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1669 THIVQQenhlLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEA 1718
Cdd:TIGR02169 454 EWKLEQ----LAADLSKYEQELY--DLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
360-947 |
4.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 360 AALASFKAEIRHLLERVDQVVREK-EKLRSDLDKAEKLKSLMaSEVDDHHAAIERrneyNLRKLDEEYKERIAALKNELR 438
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDADiETAAADQEQLPSWQSEL-ENLEERLKALTG----KHQDVTAKYNRRRSKIKEQNN 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 439 KEREQILQQAGKQRleleQEIEKAKTEENYIRDRLALSLkeNSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgd 518
Cdd:pfam12128 390 RDIAGIKDKLAKIR----EARDRQLAVAEDDLQALESEL--REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATAT---- 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 519 ldpssaefflqEERLTQMRNEyerqcrvlQDQVDELQSELEEYRAQgrVLRLplknsPSEEVEANSGGIEPEHGLGSEEC 598
Cdd:pfam12128 460 -----------PELLLQLENF--------DERIERAREEQEAANAE--VERL-----QSELRQARKRRDQASEALRQASR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 599 NPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK----------QLDETVVSCKKAQEN--------MKQRHEN 660
Cdd:pfam12128 514 RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhrtDLDPEVWDGSVGGELnlygvkldLKRIDVP 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 661 ETHTLEKQisdlkneiaeLQGQAAVLKEAHHEATCRHEEEKKQLqVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFER 740
Cdd:pfam12128 594 EWAASEEE----------LRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKASREETFARTALKNARLDLRRLFDEK 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 741 EREGLQSSAWTEEKVRGLTQELEQFhQEQLTSLVEKHTLEKEELRKELLEKHQRELQ-----------------EGREKM 803
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSL-EAQLKQLDKKHQAWLEEQKEQKREARTEKQAywqvvegaldaqlallkAAIAAR 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 804 ETECNRRTSQIEAQFQSDCQK------VTERCESALQSLEGRYRQELKDLQEQQREE---KSQWEFEKDELTQECAE--- 871
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASlgvdpdVIAKLKREIRTLERKIERIAVRRQEVLRYFdwyQETWLQRRPRLATQLSNier 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 872 AQELLKETLKRE----KTTSLVLTQEREMLEKTYKE--HLNSMVVERQQLLQDLEDLRNVSETQQSL--LSDQILELKSS 943
Cdd:pfam12128 822 AISELQQQLARLiadtKLRRAKLEMERKASEKQQVRlsENLRGLRCEMSKLATLKEDANSEQAQGSIgeRLAQLEDLKLK 901
|
....
gi 1890284505 944 HKRE 947
Cdd:pfam12128 902 RDYL 905
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
678-940 |
5.08e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.05 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 678 ELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEkTHLQEKLRLQHE-MELKArLTQAQASFEREREGLQSSAWTEEKVr 756
Cdd:pfam07111 54 ELEGSQALSQQAELISRQLQELRRLEEEVRLLRE-TSLQQKMRLEAQaMELDA-LAVAEKAGQAEAEGLRAALAGAEMV- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 757 gltqeleqfhqeqltslvekhtlekeelRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKvTERCESALQSL 836
Cdd:pfam07111 131 ----------------------------RKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSK-AEGLEKSLNSL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 837 EGRYRQELKDLQEQQREEksqwEFEKDEL--TQECAEAQELLKETLKR---EKTTSLVLTQEREMLEKTYKEHLNSMVVE 911
Cdd:pfam07111 182 ETKRAGEAKQLAEAQKEA----ELLRKQLskTQEELEAQVTLVESLRKyvgEQVPPEVHSQTWELERQELLDTMQHLQED 257
|
250 260
....*....|....*....|....*....
gi 1890284505 912 RQQLLQDLEDLRNVSETQQSLLSDQILEL 940
Cdd:pfam07111 258 RADLQATVELLQVRVQSLTHMLALQEEEL 286
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
466-1024 |
5.32e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 466 ENYIRDRLALSLKENSRLENELLENAEKlaEYENLTNKLQrnlenvlAEKFGDLDPSSAEFFLQEERLTqMRNEYERQCR 545
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLS-------HLHFGYKSDETLIASRQEERQE-TSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 546 VLQDQVDELQSEL-----------EEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEeCNPLNMSIEAElvieqm 614
Cdd:pfam12128 294 TLDDQWKEKRDELngelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE-LENLEERLKAL------ 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 615 kEQHHRDIcclrleledkVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEiaeLQGQAAVLKEAHHEAT 694
Cdd:pfam12128 367 -TGKHQDV----------TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD---LQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 695 CRHEEEKKQLQVKLEEEKTHL-------QEKLRLQHEMEL--KARLTQAQASFERER---EGLQSSAWTEEKVRGLTQEl 762
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLnqatatpELLLQLENFDERieRAREEQEAANAEVERlqsELRQARKRRDQASEALRQA- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 763 EQFHQEQLTSLVEKHT---------------------------LEKEELRKELLEKHQRELQEGREK------------- 802
Cdd:pfam12128 512 SRRLEERQSALDELELqlfpqagtllhflrkeapdweqsigkvISPELLHRTDLDPEVWDGSVGGELnlygvkldlkrid 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 803 ------METECNRRTSQIEAQFQSDcQKVTERCESALQSLEG----------RYRQELKDLQEQQREEKSQWEFEKDELT 866
Cdd:pfam12128 592 vpewaaSEEELRERLDKAEEALQSA-REKQAAAEEQLVQANGelekasreetFARTALKNARLDLRRLFDEKQSEKDKKN 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 867 QECAEAQELLKETL-KREKTTSLVLTQEREMLEKTyKEHLNSMVVERQQLLQDLEDLRNVsetQQSLLSDQILELKSSHK 945
Cdd:pfam12128 671 KALAERKDSANERLnSLEAQLKQLDKKHQAWLEEQ-KEQKREARTEKQAYWQVVEGALDA---QLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 946 RELREREEVLCQAGASEQLASQRLERLEmehdQERQEMMSKLLAME-NIHKATC------ETADRERAEMSTEISRLQSK 1018
Cdd:pfam12128 747 AELKALETWYKRDLASLGVDPDVIAKLK----REIRTLERKIERIAvRRQEVLRyfdwyqETWLQRRPRLATQLSNIERA 822
|
....*.
gi 1890284505 1019 IKEMQQ 1024
Cdd:pfam12128 823 ISELQQ 828
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
629-802 |
5.44e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 41.53 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 629 LEDKVRHYEKQLDETVVSCKKAQENMKQRHEnethtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKL 708
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQ------LKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 709 EEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKVRGLTQELEQFHQEQltslvEKHTLEKEELRKEL 788
Cdd:pfam05262 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESKASEKEA-----EDKELEAQKKREPV 333
|
170
....*....|....
gi 1890284505 789 LEKHQRELQEGREK 802
Cdd:pfam05262 334 AEDLQKTKPQVEAQ 347
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1454-1965 |
5.63e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1454 LELEKTKLQELTRKLKERVTILVKQKDVLshgekeeelKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEI-TT 1532
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYL---------RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLqNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1533 LNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKmvenlkkqiselkIKNQQLDLEntELSQKNSQNQEKLQELNQ 1612
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQE-------------IRSILVDFE--EASGKKIYEHDSMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1613 RLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVssleaelsEVKIQTHivqqenhllKDELEKMKQLHRC 1692
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI--------ELLLQQH---------QDRIEQLISEHEV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1693 pDLSDFQQKISSVLSYNEKLLKEKEALSEELNScvdklaKSSLLEHRIATMkqeqkswEHQSASLKSQLvasQEKVQNLE 1772
Cdd:pfam15921 279 -EITGLTEKASSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDL-------ESTVSQLRSEL---REAKRMYE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1773 DTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEiatHPSGLHNQQKRLSWDK-------LDHLM 1845
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE---KELSLEKEQNKRLWDRdtgnsitIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1846 NEEQQLLwQENERLQTMVQNTKAELTHSREkvRQLESnLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQ---SPA 1922
Cdd:pfam15921 419 RELDDRN-MEVQRLEALLKAMKSECQGQME--RQMAA-IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtlESS 494
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1890284505 1923 NRKVSQMN-SLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRS 1965
Cdd:pfam15921 495 ERTVSDLTaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1736-1968 |
6.02e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1736 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--A 1813
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANleR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1814 GGKSWAPEIATHPSGLHNQQKRL-SWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHL 1892
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1890284505 1893 NPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVS--QMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTAT 1968
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1488-1661 |
6.46e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1488 EEELKAMMHDLQITCSEM---QQKVELLRYESEKLQQENSILRNEITTLNEE----------DSISNLKLGTLNGSQ--E 1552
Cdd:COG3883 36 QAELDALQAELEELNEEYnelQAELEALQAEIDKLQAEIAEAEAEIEERREElgeraralyrSGGSVSYLDVLLGSEsfS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1553 EMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEE 1632
Cdd:COG3883 116 DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ--EALLAQLSAEEAA 193
|
170 180
....*....|....*....|....*....
gi 1890284505 1633 REQEKFNLKEELERCKVQSSTLVSSLEAE 1661
Cdd:COG3883 194 AEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
608-1317 |
6.55e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 608 ELVIEQMkEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMkqrhENETHTLEKQISDLKNEIAELQGQAAVLK 687
Cdd:TIGR00606 397 TLVIERQ-EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI----ELKKEILEKKQEELKFVIKELQQLEGSSD 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 688 E--------AHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEmelKARLTQAQASFEREREGL-QSSAWTEEKVRGL 758
Cdd:TIGR00606 472 RileldqelRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRK---LRKLDQEMEQLNHHTTTRtQMEMLTKDKMDKD 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 759 TQ--ELEQFHQEQLTSLVEK-----------HTLEKE-ELRKELLEKHQRELQEGrEKMETECNRRTSQIEAQFQSDCQK 824
Cdd:TIGR00606 549 EQirKIKSRHSDELTSLLGYfpnkkqledwlHSKSKEiNQTRDRLAKLNKELASL-EQNKNHINNELESKEEQLSSYEDK 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 825 VTERCES-ALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQE---LLKETLKREKTTSLVLTQEREMLeKT 900
Cdd:TIGR00606 628 LFDVCGSqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKL-RL 706
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 901 YKEHLNSMVVERQQLLQDLEDLRNVSETQQSllsdqILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQER 980
Cdd:TIGR00606 707 APDKLKSTESELKKKEKRRDEMLGLAPGRQS-----IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 981 QEMMSKLLAMENIHKATCETADRERaemsteisRLQSKIKEMQQATSPLSMLQSGcQVIGEEEVEGDGALSLLQQGEQLL 1060
Cdd:TIGR00606 782 ESAKVCLTDVTIMERFQMELKDVER--------KIAQQAAKLQGSDLDRTVQQVN-QEKQEKQHELDTVVSKIELNRKLI 852
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1061 EENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPGLV-MSSCLDEPATEffGNTAEQTEQFLQQNRTKQVEGVT 1139
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTeVQSLIREIKDA--KEQDSPLETFLEKDQQEKEELIS 930
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1140 RRHVLSDLEDDEVRDLGSTGTSSV-QRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRAS 1218
Cdd:TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHgYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ 1010
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 1219 EKKQDLLFDVSVLKK---KLKMLERIPEASPKY--KLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDE 1293
Cdd:TIGR00606 1011 KIQERWLQDNLTLRKrenELKEVEEELKQHLKEmgQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
|
730 740
....*....|....*....|....
gi 1890284505 1294 LKkmeevTETFLSLEKSYDEVKIE 1317
Cdd:TIGR00606 1091 LR-----EPQFRDAEEKYREMMIV 1109
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
424-564 |
6.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 424 EEYKERIAALKNELrKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 503
Cdd:COG4942 23 AEAEAELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1890284505 504 LQRNLENVL--AEKFGDLDPS----SAEFFLQEERLTQMRNEYERQcrvLQDQVDELQSELEEYRAQ 564
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
767-897 |
7.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 767 QEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvtercESALQSLEGRYRQELKD 846
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL------------EKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1890284505 847 LQEQQRE---EKSQWEFEKDELTQECAEAQELLKETLKR-EKTTSLVLTQEREML 897
Cdd:PRK12704 105 LEKREEElekKEKELEQKQQELEKKEEELEELIEEQLQElERISGLTAEEAKEIL 159
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
367-473 |
7.54e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 367 AEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmASEVDDHHAAIERRneynLRKLDEEYKERIAALkNELRKEREQILQ 446
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEE----LEALKARWEAEKELI-EEIQELKEELEQ 482
|
90 100
....*....|....*....|....*..
gi 1890284505 447 QAGKqRLELEQEIEKAKTEENYIRDRL 473
Cdd:COG0542 483 RYGK-IPELEKELAELEEELAELAPLL 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
316-513 |
7.87e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 316 EEGIENSQEILKALDFSLDgninltELTLALENEllvtknsihQAALASFKAEIRHllERVDQVVREKEKLRSDLDKAEK 395
Cdd:TIGR02169 750 EQEIENVKSELKELEARIE------ELEEDLHKL---------EEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEA 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 396 lkslMASEVDDHHAAIERRNEYnLRKLDEEYKERIAALKNElRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAL 475
Cdd:TIGR02169 813 ----RLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
170 180 190
....*....|....*....|....*....|....*...
gi 1890284505 476 SLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLA 513
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-506 |
9.00e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLmasEVDDH--------HAAIERRNEYNLRKLD-----------EEYKE 428
Cdd:PRK05771 101 EIKELEEEISELENEIKELEQEIERLEPWGNF---DLDLSlllgfkyvSVFVGTVPEDKLEELKlesdvenveyiSTDKG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 429 RIAAL---KNELRKEREQILQQAGKQRLELeQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAE-----YENL 500
Cdd:PRK05771 178 YVYVVvvvLKELSDEVEEELKKLGFERLEL-EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEellalYEYL 256
|
....*.
gi 1890284505 501 TNKLQR 506
Cdd:PRK05771 257 EIELER 262
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
698-873 |
9.85e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.71 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 698 EEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREG----LQSSAWTEEKVRGLTQELEQFHQEQLTSl 773
Cdd:pfam15709 340 AERAEMRRLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFeeirLRKQRLEEERQRQEEEERKQRLQLQAAQ- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890284505 774 vEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQIEAQFQSDCQKVTERCESALQSLEgRYRQELKDLQEQQRE 853
Cdd:pfam15709 419 -ERARQQQEEFRRKLQELQRKKQQEEAERAEAE-KQRQKELEMQLAEEQKRLMEMAEEERLEYQ-RQKQEAEEKARLEAE 495
|
170 180
....*....|....*....|
gi 1890284505 854 EKSQWEFEKDELTQECAEAQ 873
Cdd:pfam15709 496 ERRQKEEEAARLALEEAMKQ 515
|
|
| |
