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Conserved domains on  [gi|398365385|ref|NP_878158|]
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Ksh1p [Saccharomyces cerevisiae S288C]

Protein Classification

protein kish( domain architecture ID 10536314)

protein kish is a transmembrane endoplasmic reticulum protein involved in the early part of the secretory pathway

Gene Ontology:  GO:0009306|GO:0046907

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1242 pfam06842
Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins ...
 10-45 2.01e-12

Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.


:

Pssm-ID: 462019  Cd Length: 35  Bit Score: 55.20  E-value: 2.01e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398365385  10 LLQVILLLICSCSYVHGQWPSLLDRYKnHEVLGAFW 45
Cdd:pfam06842  1 LLVVILLLICTCTYVRQLFPSLLDRNK-TGFLGIFW 35
 
Name Accession Description Interval E-value
DUF1242 pfam06842
Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins ...
 10-45 2.01e-12

Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.


Pssm-ID: 462019  Cd Length: 35  Bit Score: 55.20  E-value: 2.01e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398365385  10 LLQVILLLICSCSYVHGQWPSLLDRYKnHEVLGAFW 45
Cdd:pfam06842  1 LLVVILLLICTCTYVRQLFPSLLDRNK-TGFLGIFW 35
 
Name Accession Description Interval E-value
DUF1242 pfam06842
Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins ...
 10-45 2.01e-12

Protein of unknown function (DUF1242); This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.


Pssm-ID: 462019  Cd Length: 35  Bit Score: 55.20  E-value: 2.01e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398365385  10 LLQVILLLICSCSYVHGQWPSLLDRYKnHEVLGAFW 45
Cdd:pfam06842  1 LLVVILLLICTCTYVRQLFPSLLDRNK-TGFLGIFW 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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