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Conserved domains on  [gi|33239443|ref|NP_874384|]
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synaptophysin-like protein 1 isoform b [Homo sapiens]

Protein Classification

MARVEL domain-containing protein( domain architecture ID 10472694)

MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain-containing protein may be involved in membrane apposition and vesicle-trafficking events

Gene Ontology:  GO:0016020
PubMed:  12468223

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MARVEL pfam01284
Membrane-associating domain; MARVEL domain-containing proteins are often found in ...
 91-213 1.95e-13

Membrane-associating domain; MARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis.


:

Pssm-ID: 366555  Cd Length: 136  Bit Score: 65.43  E-value: 1.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33239443    91 GDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSlYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATghniid 170
Cdd:pfam01284  32 GSYPSAVNFAVFVAVFSFLIALFFLLLYLFGYS-YFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSENQ------ 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33239443   171 elppckkkavlCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWF 213
Cdd:pfam01284 105 -----------GSGDLTRRCRAAQAAIAFGFFAWLLFLASAVL 136
 
Name Accession Description Interval E-value
MARVEL pfam01284
Membrane-associating domain; MARVEL domain-containing proteins are often found in ...
 91-213 1.95e-13

Membrane-associating domain; MARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis.


Pssm-ID: 366555  Cd Length: 136  Bit Score: 65.43  E-value: 1.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33239443    91 GDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSlYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATghniid 170
Cdd:pfam01284  32 GSYPSAVNFAVFVAVFSFLIALFFLLLYLFGYS-YFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSENQ------ 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33239443   171 elppckkkavlCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWF 213
Cdd:pfam01284 105 -----------GSGDLTRRCRAAQAAIAFGFFAWLLFLASAVL 136
 
Name Accession Description Interval E-value
MARVEL pfam01284
Membrane-associating domain; MARVEL domain-containing proteins are often found in ...
 91-213 1.95e-13

Membrane-associating domain; MARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis.


Pssm-ID: 366555  Cd Length: 136  Bit Score: 65.43  E-value: 1.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33239443    91 GDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSlYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATghniid 170
Cdd:pfam01284  32 GSYPSAVNFAVFVAVFSFLIALFFLLLYLFGYS-YFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSENQ------ 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33239443   171 elppckkkavlCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWF 213
Cdd:pfam01284 105 -----------GSGDLTRRCRAAQAAIAFGFFAWLLFLASAVL 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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