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Conserved domains on  [gi|30795245|ref|NP_775558|]
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proline and serine-rich protein 1 [Mus musculus]

Protein Classification

DUF4476 domain-containing protein( domain architecture ID 10632145)

DUF4476 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4476 pfam14771
Domain of unknown function (DUF4476);
29-121 2.16e-18

Domain of unknown function (DUF4476);


:

Pssm-ID: 434196  Cd Length: 91  Bit Score: 80.69  E-value: 2.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245    29 VHGYFSSEQVVDLLRYFSWAEPQLKAMK-ALQHKMVAVhpAEVVSILSCFTFSKDKLAALELLASNIVDAQNSRPIEDLF 107
Cdd:pfam14771   1 VMSDNDFDQLVEKLKRFSFDDDKLKLLEqALLNNYFTC--SQAAQLLKIFSFDDDRLKALKLLYPNIVDKQNYEVIIDVF 78

                          90
                  ....*....|....
gi 30795245   108 RINmSEKKRCKRVL 121
Cdd:pfam14771  79 TFS-SDKDKAREIL 91
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 427-828 4.70e-11

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 67.27  E-value: 4.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   427 PLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGFLTSNDThliNSSALPSAVTSGLASLSSLPNRNSDSPASATN 506
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR---DDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   507 KCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPA---QSPLATPSTAVPVSCGSSGSLLHGPHAGGISSAPAA 583
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   584 ATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSgalgrgyPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHA 663
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-------WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   664 SSTPIAPVFTALPPFTSLTNSFPL-----PGSPSLNPAVSLAGSSTTTTSAAVHPS--SATVRSVLPTSNASPAAFPLNL 736
Cdd:PHA03247 2839 PPPPPGPPPPSLPLGGSVAPGGDVrrrppSRSPAAKPAAPARPPVRRLARPAVSRSteSFALPPDQPERPPQPQAPPPPQ 2918

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   737 STAVPSLFAVTQGPLPTsnPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAAS---APSPAPVLPGFASAFSSN 813
Cdd:PHA03247 2919 PQPQPPPPPQPQPPPPP--PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSREAPASSTPPL 2996

                         410
                  ....*....|....*
gi 30795245   814 FNSALVAQAGLSSGL 828
Cdd:PHA03247 2997 TGHSLSRVSSWASSL 3011
 
Name Accession Description Interval E-value
DUF4476 pfam14771
Domain of unknown function (DUF4476);
29-121 2.16e-18

Domain of unknown function (DUF4476);


Pssm-ID: 434196  Cd Length: 91  Bit Score: 80.69  E-value: 2.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245    29 VHGYFSSEQVVDLLRYFSWAEPQLKAMK-ALQHKMVAVhpAEVVSILSCFTFSKDKLAALELLASNIVDAQNSRPIEDLF 107
Cdd:pfam14771   1 VMSDNDFDQLVEKLKRFSFDDDKLKLLEqALLNNYFTC--SQAAQLLKIFSFDDDRLKALKLLYPNIVDKQNYEVIIDVF 78

                          90
                  ....*....|....
gi 30795245   108 RINmSEKKRCKRVL 121
Cdd:pfam14771  79 TFS-SDKDKAREIL 91
PHA03247 PHA03247
large tegument protein UL36; Provisional
 427-828 4.70e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 67.27  E-value: 4.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   427 PLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGFLTSNDThliNSSALPSAVTSGLASLSSLPNRNSDSPASATN 506
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR---DDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   507 KCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPA---QSPLATPSTAVPVSCGSSGSLLHGPHAGGISSAPAA 583
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   584 ATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSgalgrgyPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHA 663
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-------WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   664 SSTPIAPVFTALPPFTSLTNSFPL-----PGSPSLNPAVSLAGSSTTTTSAAVHPS--SATVRSVLPTSNASPAAFPLNL 736
Cdd:PHA03247 2839 PPPPPGPPPPSLPLGGSVAPGGDVrrrppSRSPAAKPAAPARPPVRRLARPAVSRSteSFALPPDQPERPPQPQAPPPPQ 2918

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   737 STAVPSLFAVTQGPLPTsnPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAAS---APSPAPVLPGFASAFSSN 813
Cdd:PHA03247 2919 PQPQPPPPPQPQPPPPP--PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSREAPASSTPPL 2996

                         410
                  ....*....|....*
gi 30795245   814 FNSALVAQAGLSSGL 828
Cdd:PHA03247 2997 TGHSLSRVSSWASSL 3011
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 439-784 7.58e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 49.91  E-value: 7.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   439 TPTPSVIASAAGPHGVNSPLLSALKGFLTSNDTHLINSSALPSAVTSGLAS--LSSLPNRNSDSPASATNKCYPPAAVPA 516
Cdd:pfam05109 414 TTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTgpTVSTADVTSPTPAGTTSGASPVTPSPS 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   517 AQRSSTPGLAmfPGLQSPVASATSVAPTLPAQSPLATP----STAVPVSCGSSGSLLHGPHAGGISSAPAA------ATM 586
Cdd:pfam05109 494 PRDNGTESKA--PDMTSPTSAVTTPTPNATSPTPAVTTptpnATSPTLGKTSPTSAVTTPTPNATSPTPAVttptpnATI 571

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   587 PVMIKSEPTS----PPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTclNPALSGLSSLSTPLAGSMSLPPH 662
Cdd:pfam05109 572 PTLGKTSPTSavttPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNAT--SAVTTGQHNITSSSTSSMSLRPS 649

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   663 ASStpiapvfTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSnASPAAFPLNLSTAV-P 741
Cdd:pfam05109 650 SIS-------ETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGT-TSQASGPGNSSTSTkP 721

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 30795245   742 SLFAVTQGPlPTSNPSYPGFPvSSAPSGAPTLPSFPGLQAPST 784
Cdd:pfam05109 722 GEVNVTKGT-PPKNATSPQAP-SGQKTAVPTVTSTGGKANSTT 762
PPE COG5651
PPE-repeat protein [Function unknown];
578-812 2.06e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.88  E-value: 2.06e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 578 SSAPAAATMPvmiksePTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTCLNPALSGLSSLSTPLAGSM 657
Cdd:COG5651 157 ASAAAVALTP------FTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTG 230

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 658 SLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLS 737
Cdd:COG5651 231 FAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGL 310

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30795245 738 TAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSS 812
Cdd:COG5651 311 GAGGAAGAAGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
 
Name Accession Description Interval E-value
DUF4476 pfam14771
Domain of unknown function (DUF4476);
29-121 2.16e-18

Domain of unknown function (DUF4476);


Pssm-ID: 434196  Cd Length: 91  Bit Score: 80.69  E-value: 2.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245    29 VHGYFSSEQVVDLLRYFSWAEPQLKAMK-ALQHKMVAVhpAEVVSILSCFTFSKDKLAALELLASNIVDAQNSRPIEDLF 107
Cdd:pfam14771   1 VMSDNDFDQLVEKLKRFSFDDDKLKLLEqALLNNYFTC--SQAAQLLKIFSFDDDRLKALKLLYPNIVDKQNYEVIIDVF 78

                          90
                  ....*....|....
gi 30795245   108 RINmSEKKRCKRVL 121
Cdd:pfam14771  79 TFS-SDKDKAREIL 91
PHA03247 PHA03247
large tegument protein UL36; Provisional
 427-828 4.70e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 67.27  E-value: 4.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   427 PLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGFLTSNDThliNSSALPSAVTSGLASLSSLPNRNSDSPASATN 506
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR---DDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   507 KCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPA---QSPLATPSTAVPVSCGSSGSLLHGPHAGGISSAPAA 583
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   584 ATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSgalgrgyPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHA 663
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-------WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   664 SSTPIAPVFTALPPFTSLTNSFPL-----PGSPSLNPAVSLAGSSTTTTSAAVHPS--SATVRSVLPTSNASPAAFPLNL 736
Cdd:PHA03247 2839 PPPPPGPPPPSLPLGGSVAPGGDVrrrppSRSPAAKPAAPARPPVRRLARPAVSRSteSFALPPDQPERPPQPQAPPPPQ 2918

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   737 STAVPSLFAVTQGPLPTsnPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAAS---APSPAPVLPGFASAFSSN 813
Cdd:PHA03247 2919 PQPQPPPPPQPQPPPPP--PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSREAPASSTPPL 2996

                         410
                  ....*....|....*
gi 30795245   814 FNSALVAQAGLSSGL 828
Cdd:PHA03247 2997 TGHSLSRVSSWASSL 3011
PHA03247 PHA03247
large tegument protein UL36; Provisional
 279-768 4.72e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 4.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   279 PSTPAATP---VPAVSPAKAVNHPSVSAAATGAGMSATNTALAVfPTPQPNTPNPTVIRTPSVPATPVTSTHSTTPTPVP 355
Cdd:PHA03247 2557 PAAPPAAPdrsVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRA-PVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   356 SVFSGLVPLPglSATPTLPTQASSISRVTLASSETFASTCAPFSghSSASSTAGSASNPITAPLSSVFAGLPLPFPPASH 435
Cdd:PHA03247 2636 NEPDPHPPPT--VPPPERPRDDPAPGRVSRPRRARRLGRAAQAS--SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA 2711

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   436 SIATPTPSVIASAAGPHGVNSPLLSAlkgfltsndthlinsSALPSAVTSGLASLSSlPNRNSDSPASATnkcyPPAAVP 515
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPA---------------APAPPAVPAGPATPGG-PARPARPPTTAG----PPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   516 AAQRSSTPGLAMFPglqSPVASATSVAPTLPAQSPLATPSTAVPvscgssgsllhGPHAGGISSAPAAATMPVMIKSEPT 595
Cdd:PHA03247 2772 PAAPAAGPPRRLTR---PAVASLSESRESLPSPWDPADPPAAVL-----------APAAALPPAASPAGPLPPPTSAQPT 2837

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   596 SPPPSafKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTCLNPALSGLSSLS-TPLAGSMSLPPHASSTPIAPVFTA 674
Cdd:PHA03247 2838 APPPP--PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPP 2915

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   675 LPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAavhpssatvrsvlPTSNASPAAFPLNLSTAVPSLFAVTQGPLPTS 754
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA-------------GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

                         490
                  ....*....|....
gi 30795245   755 NPSYPGfPVSSAPS 768
Cdd:PHA03247 2983 APSREA-PASSTPP 2995
PHA03247 PHA03247
large tegument protein UL36; Provisional
 425-801 6.30e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.42  E-value: 6.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   425 GLPLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGF--LTSNDTHlINSSALPSAVTSGLASLSSLPNRNSDSPA 502
Cdd:PHA03247 2500 GGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLeeLASDDAG-DPPPPLPPAAPPAAPDRSVPPPRPAPRPS 2578

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   503 --SATNKCYPPAAVPAAQRSSTPGLamfPGLQSPVASATSVAPTLPAQSPLATPSTAVPVSCGSSGSLLHGPHAGGISSA 580
Cdd:PHA03247 2579 epAVTSRARRPDAPPQSARPRAPVD---DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   581 PAAATMPVMIKSEPTSPPPSAFKGPAHPGTP-VRGTLGLSGALGRGYPTTSVPISVSTCLNPAL--------SGLSSLST 651
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPRRRaARPTVGSLTSLADPPPPPPTPEPAPHALVSATplppgpaaARQASPAL 2735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   652 PLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAA 731
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30795245   732 FPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTLPS------FPGLQAPSTVAVTPLPVAASAPSPAP 801
Cdd:PHA03247 2816 AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGgdvrrrPPSRSPAAKPAAPARPPVRRLARPAV 2891
PHA03247 PHA03247
large tegument protein UL36; Provisional
 510-857 6.12e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 6.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   510 PPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPAQSplATPSTAvpvscgssgsllhgphaGGISSAPAAATMPVM 589
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQS--ARPRAP-----------------VDDRGDPRGPAPPSP 2616

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   590 IKSEPTSPPPSAFKGPAHPGTPVRGtlglsgalgrgyPTTSVPISVSTCLNPALSGLSSLSTplAGSMSLPPHASSTPIA 669
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPH------------PPPTVPPPERPRDDPAPGRVSRPRR--ARRLGRAAQASSPPQR 2682

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   670 PVFTALPPFTSLTNSFPLPGSPSLNPAVSlagssttttsaavhpssatvrsvlPTSNASPAAFPLNLSTAVPSLFAVTQG 749
Cdd:PHA03247 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPA------------------------PHALVSATPLPPGPAAARQASPALPAA 2738

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   750 PLPTSNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFS----SNFNSALVAQAGLS 825
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpwdpADPPAAVLAPAAAL 2818

                         330       340       350
                  ....*....|....*....|....*....|..
gi 30795245   826 SGLQAAGSSVFPGLLSLPGIPGFSQAPPQSSL 857
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 439-784 7.58e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 49.91  E-value: 7.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   439 TPTPSVIASAAGPHGVNSPLLSALKGFLTSNDTHLINSSALPSAVTSGLAS--LSSLPNRNSDSPASATNKCYPPAAVPA 516
Cdd:pfam05109 414 TTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTgpTVSTADVTSPTPAGTTSGASPVTPSPS 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   517 AQRSSTPGLAmfPGLQSPVASATSVAPTLPAQSPLATP----STAVPVSCGSSGSLLHGPHAGGISSAPAA------ATM 586
Cdd:pfam05109 494 PRDNGTESKA--PDMTSPTSAVTTPTPNATSPTPAVTTptpnATSPTLGKTSPTSAVTTPTPNATSPTPAVttptpnATI 571

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   587 PVMIKSEPTS----PPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTclNPALSGLSSLSTPLAGSMSLPPH 662
Cdd:pfam05109 572 PTLGKTSPTSavttPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNAT--SAVTTGQHNITSSSTSSMSLRPS 649

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   663 ASStpiapvfTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSnASPAAFPLNLSTAV-P 741
Cdd:pfam05109 650 SIS-------ETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGT-TSQASGPGNSSTSTkP 721

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 30795245   742 SLFAVTQGPlPTSNPSYPGFPvSSAPSGAPTLPSFPGLQAPST 784
Cdd:pfam05109 722 GEVNVTKGT-PPKNATSPQAP-SGQKTAVPTVTSTGGKANSTT 762
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 475-812 8.12e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 8.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   475 NSSALPSAVTSGLASLSSLPNRNSDSPASATNKCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPAQSPLATP 554
Cdd:PHA03307   82 NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   555 STAVPVSCGSSGSLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGL-SGALGRGYPTTSVPI 633
Cdd:PHA03307  162 VASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSS 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   634 SVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHP 713
Cdd:PHA03307  242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   714 SSATVRSVLPTSNAS-PAAFPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPV 792
Cdd:PHA03307  322 RESSSSSTSSSSESSrGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRR 401

                         330       340
                  ....*....|....*....|
gi 30795245   793 AASAPSPAPVLPGFASAFSS 812
Cdd:PHA03307  402 DATGRFPAGRPRPSPLDAGA 421
PPE COG5651
PPE-repeat protein [Function unknown];
578-812 2.06e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.88  E-value: 2.06e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 578 SSAPAAATMPvmiksePTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTCLNPALSGLSSLSTPLAGSM 657
Cdd:COG5651 157 ASAAAVALTP------FTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTG 230

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 658 SLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLS 737
Cdd:COG5651 231 FAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGL 310

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30795245 738 TAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSS 812
Cdd:COG5651 311 GAGGAAGAAGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
594-804 2.99e-04

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 44.36  E-value: 2.99e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 594 PTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFT 673
Cdd:COG3469  14 GASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTS 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245 674 ALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLSTAVpslfaVTQGPLPT 753
Cdd:COG3469  94 ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETAT-----GGTTTTST 168

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 30795245 754 SNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPlpvaasAPSPAPVLP 804
Cdd:COG3469 169 TTTTTSASTTPSATTTATATTASGATTPSATTTATT------TGPPTPGLP 213
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 501-615 4.75e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  501 PASATNKCYPPAAVPAAQRSSTPGLAmfPGLQSPVASATSVAPTLPAQS---PLATPSTAVPVSCGSSG-SLLHGPHAGG 576
Cdd:PRK14951 375 PAEKKTPARPEAAAPAAAPVAQAAAA--PAPAAAPAAAASAPAAPPAAAppaPVAAPAAAAPAAAPAAApAAVALAPAPP 452

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 30795245  577 ISSAPAAATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGT 615
Cdd:PRK14951 453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
487-716 1.44e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  487 LASLSSLPNRNSDSPASATNKCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPtlPAQSPLATPSTAVPVSCGSSG 566
Cdd:PRK12323 358 LRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAA--AARAVAAAPARRSPAPEALAA 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  567 SLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYP------TTSVPISVSTCLN 640
Cdd:PRK12323 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweelPPEFASPAPAQPD 515

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30795245  641 PALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPslnpavSLAGSSTTTTSAAVHPSSA 716
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP------RASASGLPDMFDGDWPALA 585
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
534-774 1.87e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  534 PVASATSVAPTLPAQSPLATPSTAVPVSCGSSGSLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAFkgpahpgTPVR 613
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL-------AAAR 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  614 GTLGLSGALGRGYPTTSVPISVSTCLNPAlsgLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSL 693
Cdd:PRK12323 438 QASARGPGGAPAPAPAPAAAPAAAARPAA---AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP 514

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  694 NPAVSLAGSSTTTTSAAVHPSSAtvrsvLPTSNASPAAFPLNlSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTL 773
Cdd:PRK12323 515 DAAPAGWVAESIPDPATADPDDA-----FETLAPAPAAAPAP-RAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARL 588


                 .
gi 30795245  774 P 774
Cdd:PRK12323 589 P 589
PRK10856 PRK10856
cytoskeleton protein RodZ;
474-590 2.91e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.78  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  474 INSSALPSAVTSGLASLSSLPNRNSDSPASATNKCYPPAAVPAAQRSSTPGLAMFPglqSPVASATSVAPTLPAQSPLAT 553
Cdd:PRK10856 143 ITTMADQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAP---APAVDPQQNAVVAPSQANVDT 219

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 30795245  554 PSTAVPVSCGSSGSLLHGPHAGGISSAPAAATMPVMI 590
Cdd:PRK10856 220 AATPAPAAPATPDGAAPLPTDQAGVSTPAADPNALVM 256
PHA03378 PHA03378
EBNA-3B; Provisional
 632-889 3.19e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.21  E-value: 3.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  632 PISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSlnPAVSLAGSSTTTTSAav 711
Cdd:PHA03378 571 PLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPI--PMRPLRMQPITFNVL-- 646

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  712 hpssatvrsVLPTSNASPAAFPLNLSTAVPSLFAVTQGPLPTSNPSYpgFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLP 791
Cdd:PHA03378 647 ---------VFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTM--LPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQ 715

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  792 VAASAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSVFPGLLSLP-GIPGFS--QAPPQSSLQELQHSAAAQS 868
Cdd:PHA03378 716 RPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPaAAPGAPtpQPPPQAPPAPQQRPRGAPT 795

                        250       260
                 ....*....|....*....|.
gi 30795245  869 ALLQQVHSASALESYPAQADG 889
Cdd:PHA03378 796 PQPPPQAGPTSMQLMPRAAPG 816
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 629-801 5.04e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.33  E-value: 5.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   629 TSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTS 708
Cdd:pfam17823 138 PSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAAT 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245   709 AAVHPSSATVRSVLPTSNASP----AAFPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGA-----------PTL 773
Cdd:pfam17823 218 ATGHPAAGTALAAVGNSSPAAgtvtAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAkhmpsdtmarnPAA 297

                         170       180
                  ....*....|....*....|....*...
gi 30795245   774 PSFPGLQAPSTVAVTPLPVAASAPSPAP 801
Cdd:pfam17823 298 PMGAQAQGPIIQVSTDQPVHNTAGEPTP 325
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 479-889 6.28e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 6.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  479 LPSAVTSGLASLSSLPNRNSDSPASATNKcyPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAP--TLPAQSPLATPST 556
Cdd:PRK07764 364 LPSASDDERGLLARLERLERRLGVAGGAG--APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAaaPQPAPAPAPAPAP 441

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  557 AVPVSCGSSGSLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAF-------KGPAHPGTPVRGTLG---------LSG 620
Cdd:PRK07764 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAApapaaapAAPAAPAAPAGADDAatlrerwpeILA 521

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  621 ALGRGYPTTSVpISVSTCLNPALSG----LSSLSTPLAGSMSLPPHASStpiapVFTALPPFTSLT---NSFPLPGSPSL 693
Cdd:PRK07764 522 AVPKRSRKTWA-ILLPEATVLGVRGdtlvLGFSTGGLARRFASPGNAEV-----LVTALAEELGGDwqvEAVVGPAPGAA 595

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  694 NPAVSLAGSSTTTTSAAVHP--SSATVRSVLPTSNASPAAFPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAP 771
Cdd:PRK07764 596 GGEGPPAPASSGPPEEAARPaaPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  772 TLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSSNFNSALVAQAGlSSGLQAAGSSVFPgLLSLPGIPGFSQA 851
Cdd:PRK07764 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG-ASAPSPAADDPVP-LPPEPDDPPDPAG 753

                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 30795245  852 PPQSSLQELQHSAAAQSALLQQVHSASALESYPAQADG 889
Cdd:PRK07764 754 APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
442-820 6.39e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 6.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  442 PSVIASAAGPHGVNSPLLSALKGFLTSNDTHLINSSALPSAVTSGLASLSSLPNrnSDSPASATNKCYPPAAVPAAQRSS 521
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPK--AAAAAAATRAEAPPAAPAPPATAD 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  522 TPGLAMFPGLQSPVASATSVAPTLPAQSPLATPSTAVPVSCGSSGSLlhGPHAGGISSAPAAATMPVMIKSEPTSPPPSA 601
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA--PPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  602 FKGPAHPGTPVRGTLGLSGAlgrgYPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTsl 681
Cdd:PRK07003 516 ASREDAPAAAAPPAPEARPP----TPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAA-- 589

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30795245  682 tnsfPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLStAVPSLFAVTQGPLPTSNPSYPGF 761
Cdd:PRK07003 590 ----PRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLS-ADEGFGGPDDGFVPVFDSGPDDV 664

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 30795245  762 PVSSAPSGAPTlPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSSNFNSALVA 820
Cdd:PRK07003 665 RVAPKPADAPA-PPVDTRPLPPAIPLDAIGFDGEWPALAARLPLKGVAYQLAFNSELTA 722
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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