|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02328 |
PLN02328 |
lysine-specific histone demethylase 1 homolog |
308-823 |
2.77e-94 |
|
lysine-specific histone demethylase 1 homolog
Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 313.47 E-value: 2.77e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 308 RDPTMYLALRNLILALWYTNCKEALTPQKCIPHIivrglvRIRCVQEVERILYFMTRKGLINTGV-LTVAAGQHLLPKHY 386
Cdd:PLN02328 163 TEQANYIVVRNHILARWRSNVSNWLTRDHALESI------RAEHKNLVDSAYNFLLEHGYINFGVaPVIKEAQLRSFEGV 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 387 HNKSVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVwddKSFK----GVVVGR--GPQIVNGCINNPVALMCEQL 460
Cdd:PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV---KTMKmkgdGVVAAAdlGGSVLTGINGNPLGVLARQL 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 461 GISMRKLGERCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRK---DKTLLQDVPLGEKIEeiyrAFVKESGIQFSEL 537
Cdd:PLN02328 314 GLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQamiEEVKSVDVNLGTALE----AFRHVYKVAEDPQ 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 538 EGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFaQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVT 617
Cdd:PLN02328 390 ERMLLNWHLANLEYANASLMSNLSMAYWDQDDPY-EMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVY 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 618 TTdGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVqgaDFFGHVPPSASQR 697
Cdd:PLN02328 469 AG-GQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEI---DTFGHLTEDPSMR 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 698 GLFAVFYDMDSQQ--SVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEI--PEPTKYFVTRWSTEPWIQMAYSF 773
Cdd:PLN02328 545 GEFFLFYSYSSVSggPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIvvPDPVQAVCTRWGKDCFTYGSYSY 624
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 26986559 774 VKTFGSGEAYDIIAEEI-QGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:PLN02328 625 VAVGSSGDDYDILAESVgDGRVFFAGEATNKQYPATMHGAFLSGMREAANI 675
|
|
| Amino_oxidase |
pfam01593 |
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ... |
405-823 |
8.31e-73 |
|
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Pssm-ID: 396255 [Multi-domain] Cd Length: 446 Bit Score: 245.48 E-value: 8.31e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 405 RQLHNFGMKVTVLEAKDRIGGRVWDDKsFKGVVVGRGPQIVNGCiNNPVALMCEQLGI----SMRKLGERCDLIQEGGRI 480
Cdd:pfam01593 8 RELLRAGHDVTVLEARDRVGGRIRTVR-DDGFLIELGAMWFHGA-QPPLLALLKELGLedrlVLPDPAPFYTVLFAGGRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 481 TDPTVDkRMDFHFNALLDVVSEW----------------RKDKTLLQDVPLGEKIEEIYR-AFVKESGIQFSELEGQVLQ 543
Cdd:pfam01593 86 YPGDFR-RVPAGWEGLLEFGRLLsipeklrlglaalasdALDEFDLDDFSLAESLLFLGRrGPGDVEVWDRLIDPELFAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 544 FHLSNLEYACGSSLHQVSArSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAE---GLDIRLKSPVQSIDYTGDEVQVTTTD 620
Cdd:pfam01593 165 LPFASGAFAGDPSELSAGL-ALPLLWALLGEGGSLLLPRGGLGALPDALAAqllGGDVRLNTRVRSIDREGDGVTVTLTD 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 621 GMGHSAQKVLVTVPLAILQRgaIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKvqgaDFFGHVPPSASQRGLF 700
Cdd:pfam01593 244 GEVIEADAVIVTVPLGVLKR--ILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDL----GLLGLLSELLTGLGTA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 701 AVFYDMDS-----QQSVLMSVIT-GEAVASLRTMDDKQVLQQCMGILRELFKEqEIPEPTKYFVTRWSTEPWIQMAYSFV 774
Cdd:pfam01593 318 FSWLTFPNrappgKGLLLLVYVGpGDRARELEGLSDEELLQAVLRDLRKLFGE-EAPEPLRVLVSDWHTDPWPRGSYSLP 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 26986559 775 KTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:pfam01593 397 QYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAV 445
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
405-825 |
1.85e-72 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 244.06 E-value: 1.85e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 405 RQLHNFGMKVTVLEAKDRIGGRVW-DDKSFKGVVVGRGPQIVNGcinNPVALM--CEQLGISMRKL--GERCDLIQEGGR 479
Cdd:COG1231 24 RELRKAGLDVTVLEARDRVGGRVWtLRFGDDGLYAELGAMRIPP---SHTNLLalARELGLPLEPFpnENGNALLYLGGK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 480 ITdptvdkRMDFHFNALLDVVSEWRK-DKTLLQDVPLGEKIEEIY-----RAFVKESGIQFSelegqVLQFHLSNLEYAC 553
Cdd:COG1231 101 RV------RAGEIAADLRGVAELLAKlLRALAAALDPWAHPAAELdreslAEWLRRNGASPS-----ARRLLGLLGAGEY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 554 GSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGL--DIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLV 631
Cdd:COG1231 170 GADPDELSLLDLLRYAASAGGGAQQFRIVGGMDQLPRALAAELgdRIRLGAPVTRIRQDGDGVTVTTDDGGTVRADAVIV 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 632 TVPLAILQRgaIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW--DSKVQGADFfghvppsaSQRGLFAVFY---DM 706
Cdd:COG1231 250 TVPPSVLRR--IEFDPPLPAAKRAAIQRLPYGAAIKVFLQFDRPFWeeDGLYGGISL--------TDLPIRQTWYpsnGP 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 707 DSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEqEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDII 786
Cdd:COG1231 320 DGGAGVLLGYVGGDDARALAALSPEERVAAALEQLARIFGV-YAAEPVDYVSTDWGRDPWSRGAYAAAPPGQLTAAGPAL 398
|
410 420 430
....*....|....*....|....*....|....*....
gi 26986559 787 AeEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 825
Cdd:COG1231 399 A-EPDGRIHFAGEHTSDEWPGWVEGALESGERAAAEILA 436
|
|
| zf-CW |
pfam07496 |
CW-type Zinc Finger; This domain appears to be a zinc finger. The alignment shows four ... |
138-191 |
8.81e-09 |
|
CW-type Zinc Finger; This domain appears to be a zinc finger. The alignment shows four conserved cysteine residues and a conserved tryptophan. It was first identified by, and is predicted to be a "highly specialized mononuclear four-cysteine zinc finger...that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including...chromatin methylation status and early embryonic development." Weak homology to pfam00628 further evidences these predictions (personal obs: C Yeats). Twelve different CW-domain-containing protein subfamilies are described, with different subfamilies being characteriztic of vertebrates, higher plants and other animals in which these domain is found.
Pssm-ID: 462181 Cd Length: 46 Bit Score: 51.93 E-value: 8.81e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 26986559 138 YWVQCTKpeCGKWRQLTKEIQlTPHMARTYRCGMKPNtitkpdtPDH--CSFPEDL 191
Cdd:pfam07496 1 YWVQCDS--CLKWRRLPTEID-PYELPEPWYCSMNPD-------PKYnsCDAPEEI 46
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02328 |
PLN02328 |
lysine-specific histone demethylase 1 homolog |
308-823 |
2.77e-94 |
|
lysine-specific histone demethylase 1 homolog
Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 313.47 E-value: 2.77e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 308 RDPTMYLALRNLILALWYTNCKEALTPQKCIPHIivrglvRIRCVQEVERILYFMTRKGLINTGV-LTVAAGQHLLPKHY 386
Cdd:PLN02328 163 TEQANYIVVRNHILARWRSNVSNWLTRDHALESI------RAEHKNLVDSAYNFLLEHGYINFGVaPVIKEAQLRSFEGV 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 387 HNKSVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVwddKSFK----GVVVGR--GPQIVNGCINNPVALMCEQL 460
Cdd:PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV---KTMKmkgdGVVAAAdlGGSVLTGINGNPLGVLARQL 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 461 GISMRKLGERCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRK---DKTLLQDVPLGEKIEeiyrAFVKESGIQFSEL 537
Cdd:PLN02328 314 GLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQamiEEVKSVDVNLGTALE----AFRHVYKVAEDPQ 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 538 EGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFaQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVT 617
Cdd:PLN02328 390 ERMLLNWHLANLEYANASLMSNLSMAYWDQDDPY-EMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVY 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 618 TTdGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVqgaDFFGHVPPSASQR 697
Cdd:PLN02328 469 AG-GQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEI---DTFGHLTEDPSMR 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 698 GLFAVFYDMDSQQ--SVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEI--PEPTKYFVTRWSTEPWIQMAYSF 773
Cdd:PLN02328 545 GEFFLFYSYSSVSggPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIvvPDPVQAVCTRWGKDCFTYGSYSY 624
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 26986559 774 VKTFGSGEAYDIIAEEI-QGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:PLN02328 625 VAVGSSGDDYDILAESVgDGRVFFAGEATNKQYPATMHGAFLSGMREAANI 675
|
|
| PLN03000 |
PLN03000 |
amine oxidase |
313-824 |
3.48e-90 |
|
amine oxidase
Pssm-ID: 178578 [Multi-domain] Cd Length: 881 Bit Score: 303.87 E-value: 3.48e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 313 YLALRNLILALWYTNCKEALTPQKCIphiivrGLVRIRCVQEVERILYFMTRKGLINTGVltVAAGQHLLPKHYHNKSVL 392
Cdd:PLN03000 117 YILIRNHIISKWRENISSWVTKEMFL------GSIPKHCSSLLDSAYNYLVTHGYINFGI--AQAIKDKFPAQSSKSSVV 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 393 VVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVWDDK---SFKGVVVGRGPQIVNGCINNPVALMCEQLGISMRKLGE 469
Cdd:PLN03000 189 IVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKmeaNRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRD 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 470 RCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRK---DKTLlqDVPLGEKIEeiyrAFVKESGIQFSELEGQVLQFHL 546
Cdd:PLN03000 269 KCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQlmgDVSM--DVSLGAALE----TFRQVSGNDVATEEMGLFNWHL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 547 SNLEYACGSSLHQVSARSWDHNEFFaQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMgHSA 626
Cdd:PLN03000 343 ANLEYANAGLVSKLSLAFWDQDDPY-DMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQV-YEG 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 627 QKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVqgaDFFGHVPPSASQRGLFAVFYDM 706
Cdd:PLN03000 421 DMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL---DTFGHLTEDPNYRGEFFLFYSY 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 707 D--SQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEI--PEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEA 782
Cdd:PLN03000 498 ApvAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGInvPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDD 577
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 26986559 783 YDIIAEEI-QGTVFFAGEATNRHFPQTVTGAYLSGVREASKIA 824
Cdd:PLN03000 578 YDILAESVgDGRLFFAGEATTRRYPATMHGAFVTGLREAANMA 620
|
|
| PLN02529 |
PLN02529 |
lysine-specific histone demethylase 1 |
313-823 |
5.42e-89 |
|
lysine-specific histone demethylase 1
Pssm-ID: 178144 [Multi-domain] Cd Length: 738 Bit Score: 297.19 E-value: 5.42e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 313 YLALRNLILALWYTNCKEALTpqkciphiivRGLVRIRCVQEVERILY----FMTRKGLINTGVLTVAAGQhlLPKHYHN 388
Cdd:PLN02529 93 YIVVRNHILARWRSNVGIWLS----------KGQIKETVSSEYEHLISaaydFLLYNGYINFGVSPSFASP--IPEEGTE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 389 KSVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVWDDK-SFKG--VVVGRGPQIVNGCINNPVALMCEQLGISMR 465
Cdd:PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKmGRKGqfAAVDLGGSVITGIHANPLGVLARQLSIPLH 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 466 KLGERCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRK-DKTLLQDVPLGEKIEEIYRAFvkesGIQFSELEGQVLQF 544
Cdd:PLN02529 241 KVRDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQiMGGFANDISLGSVLERLRQLY----GVARSTEERQLLDW 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 545 HLSNLEYACGSSLHQVSARSWDHNEFFaQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMgH 624
Cdd:PLN02529 317 HLANLEYANAGCLSDLSAAYWDQDDPY-EMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQV-F 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 625 SAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVqgaDFFGHVPPSASQRGLFAVFY 704
Cdd:PLN02529 395 QADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEEL---DTFGCLNESSNKRGEFFLFY 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 705 DMD--SQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELF--KEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSG 780
Cdd:PLN02529 472 GYHtvSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYnpKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSG 551
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 26986559 781 EAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:PLN02529 552 SDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRI 594
|
|
| PLN02976 |
PLN02976 |
amine oxidase |
389-823 |
2.03e-77 |
|
amine oxidase
Pssm-ID: 215527 [Multi-domain] Cd Length: 1713 Bit Score: 274.82 E-value: 2.03e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 389 KSVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGC--------INNPVALMCEQL 460
Cdd:PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVeadvaterRPDPSSLICAQL 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 461 GISMRKLGERCDL--IQEGGRITDpTVDKRMDFHFNALLD----VVSE-----------------------------WRK 505
Cdd:PLN02976 774 GLELTVLNSDCPLydVVTGEKVPA-DLDEALEAEYNSLLDdmvlLVAQkgehamkmsledgleyalkrrrmprpgvdIDE 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 506 DKTLLQDVPL--GEKIEEIYRAFVKESGIQF-SELEGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFAQFAGDHTLLT 582
Cdd:PLN02976 853 TELGNAADDLydSASTGVDGGHCEKESKEDVlSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIK 932
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 583 PGYSTIIEKLAEGLDIRLKSPVQSIDYTGDE----------VQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEK 652
Cdd:PLN02976 933 GGYSNVVESLAEGLDIHLNHVVTDVSYGSKDagasgssrkkVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDW 1012
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 653 KMKAINSLGAGIIEKIALQFPYRFWDSKVqgaDFFGHVPPSASQRGLFAVFYDMDSQ--QSVLMSVITGEAVASLRTMDD 730
Cdd:PLN02976 1013 KYSSIQRLGFGVLNKVVLEFPEVFWDDSV---DYFGATAEETDLRGQCFMFWNVKKTvgAPVLIALVVGKAAIDGQSMSS 1089
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 731 KQVLQQCMGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVT 810
Cdd:PLN02976 1090 SDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVG 1169
|
490
....*....|...
gi 26986559 811 GAYLSGVREASKI 823
Cdd:PLN02976 1170 GAMMSGLREAVRI 1182
|
|
| Amino_oxidase |
pfam01593 |
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ... |
405-823 |
8.31e-73 |
|
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Pssm-ID: 396255 [Multi-domain] Cd Length: 446 Bit Score: 245.48 E-value: 8.31e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 405 RQLHNFGMKVTVLEAKDRIGGRVWDDKsFKGVVVGRGPQIVNGCiNNPVALMCEQLGI----SMRKLGERCDLIQEGGRI 480
Cdd:pfam01593 8 RELLRAGHDVTVLEARDRVGGRIRTVR-DDGFLIELGAMWFHGA-QPPLLALLKELGLedrlVLPDPAPFYTVLFAGGRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 481 TDPTVDkRMDFHFNALLDVVSEW----------------RKDKTLLQDVPLGEKIEEIYR-AFVKESGIQFSELEGQVLQ 543
Cdd:pfam01593 86 YPGDFR-RVPAGWEGLLEFGRLLsipeklrlglaalasdALDEFDLDDFSLAESLLFLGRrGPGDVEVWDRLIDPELFAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 544 FHLSNLEYACGSSLHQVSArSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAE---GLDIRLKSPVQSIDYTGDEVQVTTTD 620
Cdd:pfam01593 165 LPFASGAFAGDPSELSAGL-ALPLLWALLGEGGSLLLPRGGLGALPDALAAqllGGDVRLNTRVRSIDREGDGVTVTLTD 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 621 GMGHSAQKVLVTVPLAILQRgaIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKvqgaDFFGHVPPSASQRGLF 700
Cdd:pfam01593 244 GEVIEADAVIVTVPLGVLKR--ILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDL----GLLGLLSELLTGLGTA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 701 AVFYDMDS-----QQSVLMSVIT-GEAVASLRTMDDKQVLQQCMGILRELFKEqEIPEPTKYFVTRWSTEPWIQMAYSFV 774
Cdd:pfam01593 318 FSWLTFPNrappgKGLLLLVYVGpGDRARELEGLSDEELLQAVLRDLRKLFGE-EAPEPLRVLVSDWHTDPWPRGSYSLP 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 26986559 775 KTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:pfam01593 397 QYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAV 445
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
405-825 |
1.85e-72 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 244.06 E-value: 1.85e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 405 RQLHNFGMKVTVLEAKDRIGGRVW-DDKSFKGVVVGRGPQIVNGcinNPVALM--CEQLGISMRKL--GERCDLIQEGGR 479
Cdd:COG1231 24 RELRKAGLDVTVLEARDRVGGRVWtLRFGDDGLYAELGAMRIPP---SHTNLLalARELGLPLEPFpnENGNALLYLGGK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 480 ITdptvdkRMDFHFNALLDVVSEWRK-DKTLLQDVPLGEKIEEIY-----RAFVKESGIQFSelegqVLQFHLSNLEYAC 553
Cdd:COG1231 101 RV------RAGEIAADLRGVAELLAKlLRALAAALDPWAHPAAELdreslAEWLRRNGASPS-----ARRLLGLLGAGEY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 554 GSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGL--DIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLV 631
Cdd:COG1231 170 GADPDELSLLDLLRYAASAGGGAQQFRIVGGMDQLPRALAAELgdRIRLGAPVTRIRQDGDGVTVTTDDGGTVRADAVIV 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 632 TVPLAILQRgaIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW--DSKVQGADFfghvppsaSQRGLFAVFY---DM 706
Cdd:COG1231 250 TVPPSVLRR--IEFDPPLPAAKRAAIQRLPYGAAIKVFLQFDRPFWeeDGLYGGISL--------TDLPIRQTWYpsnGP 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 707 DSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEqEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDII 786
Cdd:COG1231 320 DGGAGVLLGYVGGDDARALAALSPEERVAAALEQLARIFGV-YAAEPVDYVSTDWGRDPWSRGAYAAAPPGQLTAAGPAL 398
|
410 420 430
....*....|....*....|....*....|....*....
gi 26986559 787 AeEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 825
Cdd:COG1231 399 A-EPDGRIHFAGEHTSDEWPGWVEGALESGERAAAEILA 436
|
|
| PLN02268 |
PLN02268 |
probable polyamine oxidase |
390-823 |
1.41e-62 |
|
probable polyamine oxidase
Pssm-ID: 177909 [Multi-domain] Cd Length: 435 Bit Score: 217.25 E-value: 1.41e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 390 SVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDRIGGRVWDDKSFkGVVVGRGPQIVNG-CINNPVALMCEQLGISM-RKL 467
Cdd:PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF-GFPVDMGASWLHGvCNENPLAPLIGRLGLPLyRTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 468 G----------ERCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRKDKTllQDVPLgekIEEIYRAFVKESGIQFSEL 537
Cdd:PLN02268 81 GdnsvlydhdlESYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHE--EDMSL---LQAISIVLERHPELRLEGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 538 EGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFAqfaGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVT 617
Cdd:PLN02268 156 AHEVLQWYLCRMEGWFAADADTISLKSWDQEELLE---GGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 618 TTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSkvqgADFFGHVPPSASQR 697
Cdd:PLN02268 233 VEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN----VEFLGVVAPTSYGC 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 698 GLFAVFYDMdSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQeiPEPTKYFVTRWSTEPWIQMAYSFVKTF 777
Cdd:PLN02268 309 SYFLNLHKA-TGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVG 385
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 26986559 778 GSGEAYDIIAEEIqGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 823
Cdd:PLN02268 386 KPHDLYERLRAPV-DNLFFAGEATSSDFPGSVHGAYSTGVMAAEEC 430
|
|
| PLN02676 |
PLN02676 |
polyamine oxidase |
390-823 |
6.26e-38 |
|
polyamine oxidase
Pssm-ID: 215362 [Multi-domain] Cd Length: 487 Bit Score: 148.32 E-value: 6.26e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 390 SVLVVGAGPAGLAAARQLHNFGMK-VTVLEAKDRIGGRVwDDKSFKGVVVGRGP---QIVNGCINNPVALMCEQLGisMR 465
Cdd:PLN02676 28 SVIIVGAGMSGISAAKTLSEAGIEdILILEATDRIGGRM-RKANFAGVSVELGAnwvEGVGGPESNPIWELANKLK--LR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 466 KLGERCDLI------QEGGRITDPTVDKRMDfhfnaLLDVVSEWrkdKTLLQDVPLGEKIEEIyrafvkeSGIQFSELEG 539
Cdd:PLN02676 105 TFYSDFDNLssniykQDGGLYPKKVVQKSMK-----VADASDEF---GENLSISLSAKKAVDI-------SILTAQRLFG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 540 Q--------VLQFHLSNLEYA---CGSSLHQVSARSwdhneFFAQFAGDHTLLTP--GYSTIIEKLAEG---------LD 597
Cdd:PLN02676 170 QvpktplemVIDYYNYDYEFAeppRVTSLKNTEPNP-----TFVDFGEDEYFVADprGYESLVYYLAEQflstksgkiTD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 598 IRLK--SPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYR 675
Cdd:PLN02676 245 PRLKlnKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYK 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 676 FWDSKvQGADFFGHvppSASQRGLFAVFYDMDSQ---QSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQeIPE 752
Cdd:PLN02676 325 FWPSG-PGTEFFLY---AHERRGYYPFWQHLENEypgSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPN-IPE 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 26986559 753 PTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIqGTVFFAGEATNRHFPQTVTGAYLSGVrEASKI 823
Cdd:PLN02676 400 ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPV-GRVYFTGEHTSEKYNGYVHGAYLAGI-DTAND 468
|
|
| PLN02568 |
PLN02568 |
polyamine oxidase |
413-823 |
4.75e-33 |
|
polyamine oxidase
Pssm-ID: 215308 [Multi-domain] Cd Length: 539 Bit Score: 134.96 E-value: 4.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 413 KVTVLEAKDRIGGRVwDDKSFKGVVVGRGPQIVNGCINNPV--------ALMCEQLGISMRKLGERCDLIQEGGRITDPT 484
Cdd:PLN02568 35 ELTVVEGGDRIGGRI-NTSEFGGERIEMGATWIHGIGGSPVykiaqeagSLESDEPWECMDGFPDRPKTVAEGGFEVDPS 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 485 VDKRMDFHFNALLDVVSEWRKDKTLLQDVPLGEKIE----------------------EIYRAFVKE-------SGIQFS 535
Cdd:PLN02568 114 IVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAkaarvcesggggsvgsflrrglDAYWDSVSAdeqikgyGGWSRK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 536 ELEGQVLQFHlSNLEyACGSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLD---IRLKSPVQSIDYTGD 612
Cdd:PLN02568 194 LLEEAIFTMH-ENTQ-RTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPpgtIQLGRKVTRIEWQDE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 613 EVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQ----FNPPLSEKKMKAINSLGAGIIEKIALQFPYRFwDSKVQGAD--- 685
Cdd:PLN02568 272 PVKLHFADGSTMTADHVIVTVSLGVLKAGIGEdsglFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP-DGSPEDVAkfp 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 686 -----FFGHVPPSASQ------RGLfAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEIPEP- 753
Cdd:PLN02568 351 flqmaFHRSDSEARHDkipwwmRRT-ASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGs 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 754 --------------------TKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGT------------VFFAGEAT 801
Cdd:PLN02568 430 qshplcnggassndgsrwkfVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRIsdhdqaggpplqLLFAGEAT 509
|
490 500
....*....|....*....|..
gi 26986559 802 NRHFPQTVTGAYLSGVREASKI 823
Cdd:PLN02568 510 HRTHYSTTHGAYFSGLREANRL 531
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
405-761 |
1.79e-11 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 67.16 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 405 RQLHNFGMKVTVLEAKDRIGGRVwddKSF--KGVVVGRGPQIVngCINNPVAL-MCEQLGIS--MRKLGERCDLIQEGGR 479
Cdd:COG1232 18 YRLAKAGHEVTVLEASDRVGGLI---RTVevDGFRIDRGPHSF--LTRDPEVLeLLRELGLGdeLVWPNTRKSYIYYGGK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 480 ITD-PTvdKRMDFHFNALLDVVSEWR-------KDKTLLQDVPLGEKI-----EEIYRAFVKE--SGIqFS----ELEGQ 540
Cdd:COG1232 93 LHPlPQ--GPLALLRSPLLSLAGKLRallellaPRRPPGEDESLAEFVrrrfgREVYERLVEPllEGV-YAgdpdELSAD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 541 -VLQFhLSNLEYACGSSLHQVSA--RSWDHNEFFAQFAGdhtlltpGYSTIIEKLAEGL---DIRLKSPVQSIDYTGDEV 614
Cdd:COG1232 170 wAFPR-LKRLELEHGSLIKGALAlrKGAKAGEVFGYLRG-------GLGTLVEALAEALeagEIRLGTRVTAIEREGGGW 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 615 QVTTTDGMGHSAQKVLVTVPLAILQRgAIQFNPPLSEKKMKAINSLGAGIiekIALQFPyrfwDSKVQGADFFGHVPPSA 694
Cdd:COG1232 242 RVTTSDGETIEADAVVSATPAPALAR-LLAPLPPEVAAALAGIPYASVAV---VALGFD----RPDLPPPDGFGWLVPRD 313
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 26986559 695 SQRGLFAVFY------DMDSQQSVLMSV-ITGEAVASLRTMDDKQVLQQCMGILRELFKEQeiPEPTKYFVTRW 761
Cdd:COG1232 314 EGVPILAVTFssnkwpHRAPDGKVLLRLeVGGAGDPELWQLSDEELVALALADLRKLLGID--AEPVDTRVVRW 385
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
584-662 |
1.16e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 61.44 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26986559 584 GYSTIIEKLAE-----GLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRgaiqFNPPLSEK---KMK 655
Cdd:PRK07233 196 GFATLIDALAEaiearGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADvlaRLR 271
|
....*..
gi 26986559 656 AINSLGA 662
Cdd:PRK07233 272 RIDYQGV 278
|
|
| zf-CW |
pfam07496 |
CW-type Zinc Finger; This domain appears to be a zinc finger. The alignment shows four ... |
138-191 |
8.81e-09 |
|
CW-type Zinc Finger; This domain appears to be a zinc finger. The alignment shows four conserved cysteine residues and a conserved tryptophan. It was first identified by, and is predicted to be a "highly specialized mononuclear four-cysteine zinc finger...that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including...chromatin methylation status and early embryonic development." Weak homology to pfam00628 further evidences these predictions (personal obs: C Yeats). Twelve different CW-domain-containing protein subfamilies are described, with different subfamilies being characteriztic of vertebrates, higher plants and other animals in which these domain is found.
Pssm-ID: 462181 Cd Length: 46 Bit Score: 51.93 E-value: 8.81e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 26986559 138 YWVQCTKpeCGKWRQLTKEIQlTPHMARTYRCGMKPNtitkpdtPDH--CSFPEDL 191
Cdd:pfam07496 1 YWVQCDS--CLKWRRLPTEID-PYELPEPWYCSMNPD-------PKYnsCDAPEEI 46
|
|
| SWIRM |
pfam04433 |
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ... |
298-369 |
5.22e-05 |
|
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.
Pssm-ID: 461307 [Multi-domain] Cd Length: 78 Bit Score: 42.16 E-value: 5.22e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 26986559 298 DELYEFPEY----SRDPTMYLALRNLILALWYTNCKEALTPQKCiphiivRGLVRIrCVQEVERILYFMTRKGLIN 369
Cdd:pfam04433 9 IEKRLLPEFfngkSKTPEVYLEIRNFILNLWRENPKEYLTKTDA------RRALKG-DVNLISRIHEFLERWGLIN 77
|
|
|