NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157841170|ref|NP_742114|]
View 

glutamine amidotransferase-like class 1 domain-containing protein 1 precursor [Mus musculus]

Protein Classification

type 1 glutamine amidotransferase domain-containing protein( domain architecture ID 10123442)

type 1 glutamine amidotransferase (GATase1) domain-containing protein similar to Homo sapiens glutamine amidotransferase-like class 1 domain-containing protein 1 (GATD1)

CATH:  3.40.50.880
Gene Ontology:  GO:0019172
PubMed:  10387030
SCOP:  3001405

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
GATase1_Hsp31_like cd03141
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to ...
12-216 1.27e-60

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.


:

Pssm-ID: 153235 [Multi-domain]  Cd Length: 221  Bit Score: 189.30  E-value: 1.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  12 CLLVASGASE--------GVSAQSFVHCF-TLASAAFNLQVATPGGK--AIDFVDVT-ESNARWVQDFRL----KAYASP 75
Cdd:cd03141    1 ILIVLTSADKlggtgrptGLWLEELAHPYdVFTEAGYEVDFASPKGGkvPLDPRSLDaEDDDDASVFDNDeefkKKLANT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  76 AKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSLTGPSVYE 155
Cdd:cd03141   81 KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEE 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157841170 156 LIRAPGFARLPLIVEDFVKDSGAGFSASEPDAVHVVLDRHLVTGQNANSTVPAVQNLLFLC 216
Cdd:cd03141  161 EEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221
 
Name Accession Description Interval E-value
GATase1_Hsp31_like cd03141
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to ...
12-216 1.27e-60

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.


Pssm-ID: 153235 [Multi-domain]  Cd Length: 221  Bit Score: 189.30  E-value: 1.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  12 CLLVASGASE--------GVSAQSFVHCF-TLASAAFNLQVATPGGK--AIDFVDVT-ESNARWVQDFRL----KAYASP 75
Cdd:cd03141    1 ILIVLTSADKlggtgrptGLWLEELAHPYdVFTEAGYEVDFASPKGGkvPLDPRSLDaEDDDDASVFDNDeefkKKLANT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  76 AKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSLTGPSVYE 155
Cdd:cd03141   81 KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEE 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157841170 156 LIRAPGFARLPLIVEDFVKDSGAGFSASEPDAVHVVLDRHLVTGQNANSTVPAVQNLLFLC 216
Cdd:cd03141  161 EEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221
YajL COG0693
Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins ...
34-213 1.10e-15

Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) [Defense mechanisms];


Pssm-ID: 440457 [Multi-domain]  Cd Length: 170  Bit Score: 71.67  E-value: 1.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  34 LASAAFNLQVATPGGKAIdfvdVTESNARWVQdfrlkayaSPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQH 113
Cdd:COG0693   25 LREAGAEVDVASPEGGPP----VTSKHGITVT--------ADKTLDDVDPDDYDALVLPGGHGAPDDLREDPDVVALVRE 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170 114 FRSESKPICAIGHGVAALCcatnedRSWVFQGYSLTG-PSvyelirapgfarlpliVEDFVKDSGAGFSASepdavHVVL 192
Cdd:COG0693   93 FYEAGKPVAAICHGPAVLA------AAGLLKGRKVTSfPN----------------IEDDLKNAGATYVDE-----EVVV 145
                        170       180
                 ....*....|....*....|.
gi 157841170 193 DRHLVTGQNANSTVPAVQNLL 213
Cdd:COG0693  146 DGNLITSRGPGDAPAFARALL 166
PRK04155 PRK04155
protein deglycase HchA;
34-148 5.42e-06

protein deglycase HchA;


Pssm-ID: 235228 [Multi-domain]  Cd Length: 287  Bit Score: 46.15  E-value: 5.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  34 LASAAFNLQVATPGGKAIDF---------VDVTESNARWVQDFRlkayaSPAKLESI------DGARYHALLIPSCPGAL 98
Cdd:PRK04155  86 LHKAGFEFDVATLSGNPVKFeywamphedEAVMGFYEKYKSKFK-----QPKKLADVvanllaPDSDYAAVFIPGGHGAL 160
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157841170  99 TDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSL 148
Cdd:PRK04155 161 IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSI 210
 
Name Accession Description Interval E-value
GATase1_Hsp31_like cd03141
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to ...
12-216 1.27e-60

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.


Pssm-ID: 153235 [Multi-domain]  Cd Length: 221  Bit Score: 189.30  E-value: 1.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  12 CLLVASGASE--------GVSAQSFVHCF-TLASAAFNLQVATPGGK--AIDFVDVT-ESNARWVQDFRL----KAYASP 75
Cdd:cd03141    1 ILIVLTSADKlggtgrptGLWLEELAHPYdVFTEAGYEVDFASPKGGkvPLDPRSLDaEDDDDASVFDNDeefkKKLANT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  76 AKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSLTGPSVYE 155
Cdd:cd03141   81 KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEE 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157841170 156 LIRAPGFARLPLIVEDFVKDSGAGFSASEPDAVHVVLDRHLVTGQNANSTVPAVQNLLFLC 216
Cdd:cd03141  161 EEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221
YajL COG0693
Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins ...
34-213 1.10e-15

Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) [Defense mechanisms];


Pssm-ID: 440457 [Multi-domain]  Cd Length: 170  Bit Score: 71.67  E-value: 1.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  34 LASAAFNLQVATPGGKAIdfvdVTESNARWVQdfrlkayaSPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQH 113
Cdd:COG0693   25 LREAGAEVDVASPEGGPP----VTSKHGITVT--------ADKTLDDVDPDDYDALVLPGGHGAPDDLREDPDVVALVRE 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170 114 FRSESKPICAIGHGVAALCcatnedRSWVFQGYSLTG-PSvyelirapgfarlpliVEDFVKDSGAGFSASepdavHVVL 192
Cdd:COG0693   93 FYEAGKPVAAICHGPAVLA------AAGLLKGRKVTSfPN----------------IEDDLKNAGATYVDE-----EVVV 145
                        170       180
                 ....*....|....*....|.
gi 157841170 193 DRHLVTGQNANSTVPAVQNLL 213
Cdd:COG0693  146 DGNLITSRGPGDAPAFARALL 166
GATase1_PfpI_1 cd03169
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
28-200 1.31e-06

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153243 [Multi-domain]  Cd Length: 180  Bit Score: 46.87  E-value: 1.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  28 FVHCFTLASAAFNLQVATPGGKAIDFVdVTEsnarwVQDF------------RLKAYASPAKlesIDGARYHALLIPScp 95
Cdd:cd03169   16 MVPFQALQEVGHEVDVVAPGKKKGDTV-VTA-----IHDFpgwqtytekpghRFAVTADFDE---VDPDDYDALVIPG-- 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  96 GALTD-LASSGSLARILQHFRSESKPICAIGHGVAALCCATnedrswVFQGYSLTGpsvYELIRApgfarlplivedFVK 174
Cdd:cd03169   85 GRAPEyLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAG------VLKGRRCTA---YPACKP------------EVE 143
                        170       180
                 ....*....|....*....|....*.
gi 157841170 175 DSGAGFsasEPDAVHVvlDRHLVTGQ 200
Cdd:cd03169  144 LAGGTV---VDDGVVV--DGNLVTAQ 164
PRK04155 PRK04155
protein deglycase HchA;
34-148 5.42e-06

protein deglycase HchA;


Pssm-ID: 235228 [Multi-domain]  Cd Length: 287  Bit Score: 46.15  E-value: 5.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  34 LASAAFNLQVATPGGKAIDF---------VDVTESNARWVQDFRlkayaSPAKLESI------DGARYHALLIPSCPGAL 98
Cdd:PRK04155  86 LHKAGFEFDVATLSGNPVKFeywamphedEAVMGFYEKYKSKFK-----QPKKLADVvanllaPDSDYAAVFIPGGHGAL 160
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157841170  99 TDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSL 148
Cdd:PRK04155 161 IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSI 210
GATase1_Ydr533c_like cd03147
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae ...
66-206 2.97e-05

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein; Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.


Pssm-ID: 153241 [Multi-domain]  Cd Length: 231  Bit Score: 43.47  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  66 DFRlKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPICAIGHGVAALCCATN-EDRSWVFQ 144
Cdd:cd03147   76 DFW-KKLKNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDpKTGKPLIK 154
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157841170 145 GYSLTGPS--------VYELIRAPGFArlplIVEDFVKDSGAGFSASE-PDAVHVVLDRHLVTGQNANSTV 206
Cdd:cd03147  155 GKTVTGFTdkgeeimgVMEILKKRNLE----SIEDIAERAGANFIRPPgPWDDFTVVDGRIVTGSNPASAT 221
GATase1 cd01653
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
43-131 1.37e-03

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153210 [Multi-domain]  Cd Length: 115  Bit Score: 37.19  E-value: 1.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  43 VATPGGKAIDFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPIC 122
Cdd:cd01653    4 LLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPIL 83

                 ....*....
gi 157841170 123 AIGHGVAAL 131
Cdd:cd01653   84 GICLGAQLL 92
GAT_1 cd03128
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
43-131 2.82e-03

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


Pssm-ID: 153222 [Multi-domain]  Cd Length: 92  Bit Score: 36.02  E-value: 2.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157841170  43 VATPGGKAIDFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPIC 122
Cdd:cd03128    4 LLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVL 83

                 ....*....
gi 157841170 123 AIGHGVAAL 131
Cdd:cd03128   84 GICLGAQLL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH