|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
3-149 |
7.97e-33 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 122.73 E-value: 7.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 3 PPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSenSLPGNFFYLTT 82
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLT--DLPEELGNLTN 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 34577083 83 LRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLpPELGNL 149
Cdd:COG4886 184 LKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDL-PELGNL 249
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
3-152 |
1.13e-32 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 121.96 E-value: 1.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 3 PPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSEnsLPGNFFYLTT 82
Cdd:COG4886 129 PEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITD--LPEPLGNLTN 206
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 83 LRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPkEIGELTQLKELHIQGNRLTVLPPELGNLDLT 152
Cdd:COG4886 207 LEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLPPLANLTNLK 275
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
2-142 |
5.04e-28 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 109.64 E-value: 5.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSenSLPGNFFYLT 81
Cdd:COG4886 151 LPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT--DLPEPLANLT 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 34577083 82 TLRALYLSDNDFEILpPDIGKLTKLQILSLRDNDLISLPKEiGELTQLKELHIQGNRLTVL 142
Cdd:COG4886 229 NLETLDLSNNQLTDL-PELGNLTNLEELDLSNNQLTDLPPL-ANLTNLKTLDLSNNQLTDL 287
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
3-149 |
6.43e-27 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 106.56 E-value: 6.43e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 3 PPNIAELKNLEVLNFFNNQieelptQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSenSLPGNFFYLTT 82
Cdd:COG4886 89 LTDLGDLTNLTELDLSGNE------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT--DLPEPLGNLTN 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 34577083 83 LRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNL 149
Cdd:COG4886 161 LKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANL 227
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
4-149 |
1.62e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 91.53 E-value: 1.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 4 PNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRlntlprGFGSLPALEVLDLTYNNLSenSLPGNFFYLTTL 83
Cdd:COG4886 67 LLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE------ELSNLTNLESLDLSGNQLT--DLPEELANLTNL 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 34577083 84 RALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNL 149
Cdd:COG4886 139 KELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNL 204
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
5-149 |
4.33e-16 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 76.13 E-value: 4.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 5 NIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNlsenslpgNFFYLTTLR 84
Cdd:COG4886 45 LLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE--------ELSNLTNLE 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 34577083 85 ALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNL 149
Cdd:COG4886 117 SLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNL 181
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-149 |
4.29e-13 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 67.95 E-value: 4.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNFFNNQIE-ELPTQISSL-QKLKHLNLGMNRLN-TLPRGFgsLPALEVLDLTyNNLSENSLPGNFF 78
Cdd:PLN00113 85 ISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTsSSLRYLNLSNNNFTgSIPRGS--IPNLETLDLS-NNMLSGEIPNDIG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 79 YLTTLRALYLSDNDFE-ILPPDIGKLTKLQILSLRDNDLI-------------------------SLPKEIGELTQLKEL 132
Cdd:PLN00113 162 SFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQLVgqiprelgqmkslkwiylgynnlsgEIPYEIGGLTSLNHL 241
|
170
....*....|....*...
gi 34577083 133 HIQGNRLT-VLPPELGNL 149
Cdd:PLN00113 242 DLVYNNLTgPIPSSLGNL 259
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-147 |
6.02e-13 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 67.18 E-value: 6.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNF-FNNQIEELPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLSeNSLPGNFFY 79
Cdd:PLN00113 204 IPRELGQMKSLKWIYLgYNNLSGEIPYEIGGLTSLNHLDLVYNNLTgPIPSSLGNLKNLQYLFLYQNKLS-GPIPPSIFS 282
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 34577083 80 LTTLRALYLSDNDF--EIlPPDIGKLTKLQILSLRDNDLI-SLPKEIGELTQLKELHIQGNRLT-VLPPELG 147
Cdd:PLN00113 283 LQKLISLDLSDNSLsgEI-PELVIQLQNLEILHLFSNNFTgKIPVALTSLPRLQVLQLWSNKFSgEIPKNLG 353
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
25-91 |
5.23e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 61.37 E-value: 5.23e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34577083 25 LPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLSeNSLPGNFFYLTTLRALYLSDN 91
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGN 500
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-140 |
1.31e-10 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 60.63 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNFFNNQIE-ELPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLSeNSLPGNFFY 79
Cdd:PLN00113 300 IPELVIQLQNLEILHLFSNNFTgKIPVALTSLPRLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNLT-GEIPEGLCS 378
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 34577083 80 LTTLRALYLSDNDFE-ILPPDIGKLTKLQILSLRDNDLI-SLPKEIGELTQLKELHIQGNRLT 140
Cdd:PLN00113 379 SGNLFKLILFSNSLEgEIPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYFLDISNNNLQ 441
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-155 |
2.32e-10 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 59.86 E-value: 2.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNFFNNQIE-ELPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLSENsLPGNFFY 79
Cdd:PLN00113 372 IPEGLCSSGNLFKLILFSNSLEgEIPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYFLDISNNNLQGR-INSRKWD 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 80 LTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLI-SLPKEIGELTQLKELHIQGNRLT-VLPPELG------NLDL 151
Cdd:PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSgAVPRKLGSLSELMQLKLSENKLSgEIPDELSsckklvSLDL 530
|
....
gi 34577083 152 TGQK 155
Cdd:PLN00113 531 SHNQ 534
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
12-164 |
3.86e-10 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 58.94 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 12 LEVLNFFNNQIEELPTQISSlqKLKHLNLGMNRLNTLPRgfgSLP-ALEVLDLTYNNLSenSLPGNFfyLTTLRALYLSD 90
Cdd:PRK15370 243 IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPE---NLPeELRYLSVYDNSIR--TLPAHL--PSGITHLNVQS 313
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34577083 91 NDFEILPPDIGklTKLQILSLRDNDLISLPKEIGelTQLKELHIQGNRLTV----LPPELGNLDLTGQKQVFKAENNP 164
Cdd:PRK15370 314 NSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVlpetLPPTITTLDVSRNALTNLPENLP 387
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
5-164 |
4.68e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 58.67 E-value: 4.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 5 NIAELKNLEVLNFFNNQIEELPTQISSLQKLKH-----LNLGMNRLNTLPR---------GFGSLPALEVLD-LTYNNLS 69
Cdd:PLN03150 350 THAIINAIEVFEIITAESKTLLEEVSALQTLKSslglpLRFGWNGDPCVPQqhpwsgadcQFDSTKGKWFIDgLGLDNQG 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 70 -ENSLPGNFFYLTTLRALYLSDNDFE-ILPPDIGKLTKLQILSLRDNDLI-SLPKEIGELTQLKELHIQGNRLT-VLPPE 145
Cdd:PLN03150 430 lRGFIPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLSgRVPAA 509
|
170
....*....|....*....
gi 34577083 146 LGNLDLTGQKqvFKAENNP 164
Cdd:PLN03150 510 LGGRLLHRAS--FNFTDNA 526
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
4-153 |
7.98e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 56.72 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 4 PNIAELKNLEVLNFFNNQIEELPtQISSLQKLKHLNLGMNRLNTLPrGFGSLPALEVLDLTYNNLS-----ENslpgnff 78
Cdd:cd21340 18 DNLSLCKNLKVLYLYDNKITKIE-NLEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISvveglEN------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 79 yLTTLRALYLSDNDfeiLPPDiGKLTK-----------LQILSLRDNDLISLpKEIGELTQLKELHIQGNRLTVLP---- 143
Cdd:cd21340 89 -LTNLEELHIENQR---LPPG-EKLTFdprslaalsnsLRVLNISGNNIDSL-EPLAPLRNLEQLDASNNQISDLEelld 162
|
170
....*....|....*
gi 34577083 144 -----PELGNLDLTG 153
Cdd:cd21340 163 llsswPSLRELDLTG 177
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
4-143 |
6.68e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 54.02 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 4 PNIAELKNLEVLNFFNNQIEELPtQISSLQKLKHLNLGMNRLNTLpRGFGSLPALEVLDLTYNNL-SENSL---PGNFFY 79
Cdd:cd21340 40 ENLEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISVV-EGLENLTNLEELHIENQRLpPGEKLtfdPRSLAA 117
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34577083 80 L-TTLRALYLSDNDFEILPPdIGKLTKLQILSLRDNDLISLPK---EIGELTQLKELHIQGNRLTVLP 143
Cdd:cd21340 118 LsNSLRVLNISGNNIDSLEP-LAPLRNLEQLDASNNQISDLEElldLLSSWPSLRELDLTGNPVCKKP 184
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
1-143 |
8.32e-08 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 52.09 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 1 MVPPNIAELknlevlNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGF----------GSLPAL--EVLDLTYNNL 68
Cdd:PRK15387 259 VLPPGLLEL------SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLqelsvsdnqlASLPALpsELCKLWAYNN 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 69 SENSLPGnffYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGEL--------------TQLKELHI 134
Cdd:PRK15387 333 QLTSLPT---LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELivsgnrltslpvlpSELKELMV 409
|
....*....
gi 34577083 135 QGNRLTVLP 143
Cdd:PRK15387 410 SGNRLTSLP 418
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
1-117 |
2.84e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 50.62 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 1 MVPPNIAELKNLEVLNFFNNQIE-ELPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLSeNSLPGNFF 78
Cdd:PLN00113 490 AVPRKLGSLSELMQLKLSENKLSgEIPDELSSCKKLVSLDLSHNQLSgQIPASFSEMPVLSQLDLSQNQLS-GEIPKNLG 568
|
90 100 110
....*....|....*....|....*....|....*....
gi 34577083 79 YLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLI 117
Cdd:PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
2-155 |
5.29e-07 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 49.78 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPniaELKNLEVlnfFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSL--------------PALEVLDLTYNN 67
Cdd:PRK15387 240 LPP---ELRTLEV---SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLwifgnqltslpvlpPGLQELSVSDNQ 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 68 LSenSLPGnffYLTTLRALYLSDNDFEILPPdigKLTKLQILSLRDNDLISLPKEIGELTQ-----------------LK 130
Cdd:PRK15387 314 LA--SLPA---LPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASLPTLPSELYKlwaynnrltslpalpsgLK 385
|
170 180
....*....|....*....|....*...
gi 34577083 131 ELHIQGNRLT---VLPPELGNLDLTGQK 155
Cdd:PRK15387 386 ELIVSGNRLTslpVLPSELKELMVSGNR 413
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
11-68 |
8.34e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.82 E-value: 8.34e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 11 NLEVLNFFNNQIEEL-PTQISSLQKLKHLNLGMNRLNTL-PRGFGSLPALEVLDLTYNNL 68
Cdd:pfam13855 2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
33-93 |
8.86e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.82 E-value: 8.86e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 34577083 33 QKLKHLNLGMNRLNTLPRG-FGSLPALEVLDLTYNNLSENSlPGNFFYLTTLRALYLSDNDF 93
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGaFKGLSNLKVLDLSNNLLTTLS-PGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
2-69 |
3.75e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 47.12 E-value: 3.75e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 2 VPPNIAELKNLEVLNFFNNQIE-ELPTQISSLQKLKHLNLGMNRLN-TLPRGFGSLPALEVLDLTYNNLS 69
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLS 503
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
27-140 |
3.86e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 43.50 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 27 TQISSLQKLKHLN--LGMNRLNTLPRGFGSL-PALEVLDLTYNNLSENS---LPGNFFYLTTLRALYLSDND-----FEI 95
Cdd:cd00116 105 LRSSSLQELKLNNngLGDRGLRLLAKGLKDLpPALEKLVLGRNRLEGASceaLAKALRANRDLKELNLANNGigdagIRA 184
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 34577083 96 LPPDIGKLTKLQILSLRDNDL-----ISLPKEIGELTQLKELHIQGNRLT 140
Cdd:cd00116 185 LAEGLKANCNLEVLDLNNNGLtdegaSALAETLASLKSLEVLNLGDNNLT 234
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
56-116 |
8.47e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.43 E-value: 8.47e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 34577083 56 PALEVLDLTYNNLSENSlPGNFFYLTTLRALYLSDNDFEILPPD-IGKLTKLQILSLRDNDL 116
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLD-DGAFKGLSNLKVLDLSNNLLTTLSPGaFSGLPSLRYLDLSGNRL 61
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
1-129 |
1.11e-04 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 42.55 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 1 MVPPNIAELknlevlnFFNN--QIEELPTQISSLQKLKHLNLgMN--RLNTLPRGFgSLPALEVLDL-------TYNNLS 69
Cdd:PLN03210 775 MLSPSLTRL-------FLSDipSLVELPSSIQNLHKLEHLEI-ENciNLETLPTGI-NLESLESLDLsgcsrlrTFPDIS 845
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 34577083 70 ENslpgnffylttLRALYLSDNDFEILPPDIGKLTKLQILSLRD-NDLISLPKEIGELTQL 129
Cdd:PLN03210 846 TN-----------ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGcNNLQRVSLNISKLKHL 895
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
12-140 |
3.73e-04 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 40.92 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 12 LEVLNFFNNQIEELPTQISSLQKLKHLNlgmNRLNTLPrgfgSLPA-LEVLDLTYNNLSenSLPgnfFYLTTLRALYLSD 90
Cdd:PRK15387 344 LQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLP----ALPSgLKELIVSGNRLT--SLP---VLPSELKELMVSG 411
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 34577083 91 NDFEILP--PdigklTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLT 140
Cdd:PRK15387 412 NRLTSLPmlP-----SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
12-140 |
6.72e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 40.03 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 12 LEVLNFFNNQIEE-----LPTQISSLQKLKHLNLGMNRLN-----TLPRGFGSLPALEVLDLTYNNLSENSL----PGNF 77
Cdd:cd00116 167 LKELNLANNGIGDagiraLAEGLKANCNLEVLDLNNNGLTdegasALAETLASLKSLEVLNLGDNNLTDAGAaalaSALL 246
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 34577083 78 FYLTTLRALYLSDNDfeilppdigkltklqilsLRDNDLISLPKEIGELTQLKELHIQGNRLT 140
Cdd:cd00116 247 SPNISLLTLSLSCND------------------ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
4-157 |
1.32e-03 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 39.47 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 4 PNIAELKNLEVLNFFN-NQIEELPTQISSLQKLKHLNL-GMNRLNTLPRGFgSLPALEVLDL-------TYNNLSEN--- 71
Cdd:PLN03210 651 PDLSMATNLETLKLSDcSSLVELPSSIQYLNKLEDLDMsRCENLEILPTGI-NLKSLYRLNLsgcsrlkSFPDISTNisw 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 72 ---------SLPGNfFYLTTLRALYLSDNDFEILPPDIGKLTKLQI--------LSLRDN-DLISLPKEIGELTQLKELH 133
Cdd:PLN03210 730 ldldetaieEFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTmlspsltrLFLSDIpSLVELPSSIQNLHKLEHLE 808
|
170 180 190
....*....|....*....|....*....|
gi 34577083 134 IQGNR-LTVLP-----PELGNLDLTGQKQV 157
Cdd:PLN03210 809 IENCInLETLPtginlESLESLDLSGCSRL 838
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
7-142 |
3.80e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 37.85 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 7 AELKNLEVLNFFNNQI-----EELPTQISSLQKLKHLNLGMNRLN-----TLPRGFGSLPALEVLDLTYNNLSE------ 70
Cdd:COG5238 233 KGNKSLTTLDLSNNQIgdegvIALAEALKNNTTVETLYLSGNQIGaegaiALAKALQGNTTLTSLDLSVNRIGDegaial 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34577083 71 -NSLPGNffylTTLRALYLSDNDF-----EILPPDIGKLTKLQILSLRDNDL-----ISLPKEIGELTQLKELHIQGNRL 139
Cdd:COG5238 313 aEGLQGN----KTLHTLNLAYNGIgaqgaIALAKALQENTTLHSLDLSDNQIgdegaIALAKYLEGNTTLRELNLGKNNI 388
|
...
gi 34577083 140 TVL 142
Cdd:COG5238 389 GKQ 391
|
|
|