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Conserved domains on  [gi|40255111|ref|NP_689622|]
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UPF0461 protein C5orf24 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5568 super family cl39254
Family of unknown function (DUF5568); This is a family of unknown function found in chordata.
1-188 4.13e-84

Family of unknown function (DUF5568); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17724:

Pssm-ID: 465471 [Multi-domain]  Cd Length: 203  Bit Score: 246.83  E-value: 4.13e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111     1 MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVN------------------HKPMVCQRQDPLNET 62
Cdd:pfam17724   1 MMRQVASNNNDYCMSGKVSCLAEDGLHPASHFDLCTSQSSKFYPPAPppplqlplpnlpplpqsmHKLMACQKQDTQNDF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111    63 HLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 142
Cdd:pfam17724  81 HPQPVGLRPSEAPDGSKKKKGLGRSGRRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 40255111   143 GSIKALSRLADLGYGCGTAAFPYPMMHGRavhGVEETSSEVKPPNE 188
Cdd:pfam17724 161 GSIKALSRLNKLNYGCSGAAFPYMMMRKR---ALCEDSGKEKEPNE 203
 
Name Accession Description Interval E-value
DUF5568 pfam17724
Family of unknown function (DUF5568); This is a family of unknown function found in chordata.
1-188 4.13e-84

Family of unknown function (DUF5568); This is a family of unknown function found in chordata.


Pssm-ID: 465471 [Multi-domain]  Cd Length: 203  Bit Score: 246.83  E-value: 4.13e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111     1 MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVN------------------HKPMVCQRQDPLNET 62
Cdd:pfam17724   1 MMRQVASNNNDYCMSGKVSCLAEDGLHPASHFDLCTSQSSKFYPPAPppplqlplpnlpplpqsmHKLMACQKQDTQNDF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111    63 HLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 142
Cdd:pfam17724  81 HPQPVGLRPSEAPDGSKKKKGLGRSGRRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 40255111   143 GSIKALSRLADLGYGCGTAAFPYPMMHGRavhGVEETSSEVKPPNE 188
Cdd:pfam17724 161 GSIKALSRLNKLNYGCSGAAFPYMMMRKR---ALCEDSGKEKEPNE 203
 
Name Accession Description Interval E-value
DUF5568 pfam17724
Family of unknown function (DUF5568); This is a family of unknown function found in chordata.
1-188 4.13e-84

Family of unknown function (DUF5568); This is a family of unknown function found in chordata.


Pssm-ID: 465471 [Multi-domain]  Cd Length: 203  Bit Score: 246.83  E-value: 4.13e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111     1 MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVN------------------HKPMVCQRQDPLNET 62
Cdd:pfam17724   1 MMRQVASNNNDYCMSGKVSCLAEDGLHPASHFDLCTSQSSKFYPPAPppplqlplpnlpplpqsmHKLMACQKQDTQNDF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40255111    63 HLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 142
Cdd:pfam17724  81 HPQPVGLRPSEAPDGSKKKKGLGRSGRRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPP 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 40255111   143 GSIKALSRLADLGYGCGTAAFPYPMMHGRavhGVEETSSEVKPPNE 188
Cdd:pfam17724 161 GSIKALSRLNKLNYGCSGAAFPYMMMRKR---ALCEDSGKEKEPNE 203
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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