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Conserved domains on  [gi|19923090|ref|NP_612147|]
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RUN domain-containing protein 3B isoform a [Homo sapiens]

Protein Classification

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List of domain hits

 Name Accession Description Interval E-value
RUN_RUNDC3B cd17700
RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN ...
 35-202 5.81e-111

RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN domain-containing protein 3B (RUNDC3B), also called Rap2-binding protein 9, or Rap2-interacting protein 9 (RPIP-9), contains a RUN domain in its N-terminal region that mediates interaction with Rap2, an important component of the Mitogen-Activated Protein Kinase (MAPK) cascade, which regulates cellular proliferation and differentiation. It also contains characteristic binding sites for MAPK intermediates. RUNDC3B contains a RUN domain.


:

Pssm-ID: 439062  Cd Length: 151  Bit Score: 324.23  E-value: 5.81e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  35 NLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYESPRSFWDYI 114
Cdd:cd17700   1 NLITVCRFSVKTLIDRSCFETIDDSSPEFVNFAAILEQILSHRLK-----------------GQVTWFGYESPRSFWDYI 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 115 RVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 194
Cdd:cd17700  64 RVACSKVPHNCICSIENMENVSSSRAKGRAWIRVALMEKRLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 143


                ....*...
gi 19923090 195 NAIDFSFC 202
Cdd:cd17700 144 NAIDFSFC 151
 
Name Accession Description Interval E-value
RUN_RUNDC3B cd17700
RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN ...
 35-202 5.81e-111

RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN domain-containing protein 3B (RUNDC3B), also called Rap2-binding protein 9, or Rap2-interacting protein 9 (RPIP-9), contains a RUN domain in its N-terminal region that mediates interaction with Rap2, an important component of the Mitogen-Activated Protein Kinase (MAPK) cascade, which regulates cellular proliferation and differentiation. It also contains characteristic binding sites for MAPK intermediates. RUNDC3B contains a RUN domain.


Pssm-ID: 439062  Cd Length: 151  Bit Score: 324.23  E-value: 5.81e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  35 NLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYESPRSFWDYI 114
Cdd:cd17700   1 NLITVCRFSVKTLIDRSCFETIDDSSPEFVNFAAILEQILSHRLK-----------------GQVTWFGYESPRSFWDYI 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 115 RVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 194
Cdd:cd17700  64 RVACSKVPHNCICSIENMENVSSSRAKGRAWIRVALMEKRLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 143


                ....*...
gi 19923090 195 NAIDFSFC 202
Cdd:cd17700 144 NAIDFSFC 151
RUN pfam02759
RUN domain; This domain is present in several proteins that are linked to the functions of ...
 65-205 6.84e-37

RUN domain; This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could hence play important roles in multiple Ras-like GTPase signalling pathways. The domain is comprises six conserved regions, which in some proteins have considerable insertions between them. The domain core is thought to take up a predominantly alpha fold, with basic amino acids in regions A and D possibly playing a functional role in interactions with Ras GTPases.


Pssm-ID: 460679  Cd Length: 134  Bit Score: 132.01  E-value: 6.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090    65 NFAAILEQILSHRLKEISQScrwlahlqiplqgQVTWFGYESPRSFWDYIRVACRKV--SQNCICSIENMENVSS---SR 139
Cdd:pfam02759   1 QLCAALEALLSHGLKRSSLL-------------ILRAAGLLPERSFWALLERVGKLVppAEELLSSVQELEQIHTpysPD 67

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19923090   140 AKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEE-ANMLAGMLLGLNAIDFSFCLKG 205
Cdd:pfam02759  68 GRGRAWIRLALNEKLLDQWLKLLLSNKELLSEYYEPWALLADPEfGEILLGLLVGLSALDFNLCLKL 134
RUN smart00593
domain involved in Ras-like GTPase signaling;
142-204 1.59e-16

domain involved in Ras-like GTPase signaling;


Pssm-ID: 214736 [Multi-domain]  Cd Length: 64  Bit Score: 73.80  E-value: 1.59e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19923090    142 GRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVL-GEEANMLAGMLLGLNAIDFSFCLK 204
Cdd:smart00593   1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRdPEEGEQLLGLLVGLSALDFNLPVD 64
 
Name Accession Description Interval E-value
RUN_RUNDC3B cd17700
RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN ...
 35-202 5.81e-111

RUN domain found in RUN domain-containing protein 3B (RUNDC3B) and similar proteins; RUN domain-containing protein 3B (RUNDC3B), also called Rap2-binding protein 9, or Rap2-interacting protein 9 (RPIP-9), contains a RUN domain in its N-terminal region that mediates interaction with Rap2, an important component of the Mitogen-Activated Protein Kinase (MAPK) cascade, which regulates cellular proliferation and differentiation. It also contains characteristic binding sites for MAPK intermediates. RUNDC3B contains a RUN domain.


Pssm-ID: 439062  Cd Length: 151  Bit Score: 324.23  E-value: 5.81e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  35 NLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYESPRSFWDYI 114
Cdd:cd17700   1 NLITVCRFSVKTLIDRSCFETIDDSSPEFVNFAAILEQILSHRLK-----------------GQVTWFGYESPRSFWDYI 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 115 RVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 194
Cdd:cd17700  64 RVACSKVPHNCICSIENMENVSSSRAKGRAWIRVALMEKRLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 143


                ....*...
gi 19923090 195 NAIDFSFC 202
Cdd:cd17700 144 NAIDFSFC 151
RUN_RUNDC3 cd17684
RUN domain found in RUN domain-containing protein 3 (RUNDC3) and similar proteins; RUNDC3 ...
 35-201 1.46e-94

RUN domain found in RUN domain-containing protein 3 (RUNDC3) and similar proteins; RUNDC3 contains two isoforms, RUNDC3A and RUNDC3B. RUNDC3A, also called Rap2-interacting protein 8 (RPIP8), may act as an effector of Rap2A GTPase in neuronal cells. RUNDC3B, also called Rap2-binding protein 9, or Rap2-interacting protein 9 (RPIP-9), contains a RUN domain in its N-terminal region that mediates interaction with Rap2, an important component of the Mitogen-Activated Protein Kinase (MAPK) cascade, which regulates cellular proliferation and differentiation. It also contains characteristic binding sites for MAPK intermediates. Both RUNDC3A and RUNDC3B contain a RUN domain.


Pssm-ID: 439046  Cd Length: 150  Bit Score: 282.36  E-value: 1.46e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  35 NLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYESPRSFWDYI 114
Cdd:cd17684   1 NLVTVCRLSVKSLIDKACLETIDDSSEELINFAAILEQILSHRLK-----------------PVKPWYGSEEPRTFWDYI 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 115 RVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 194
Cdd:cd17684  64 RVACKKVPQNCIASIEQMENIKSPKAKGRAWIRVALMEKRLSEYLSTALKQTRLTRNFYQDGAIMLSEDATVLCGMLIGL 143


                ....*..
gi 19923090 195 NAIDFSF 201
Cdd:cd17684 144 NAIDFSF 150
RUN_RUNDC3A cd17699
RUN domain found in RUN domain-containing protein 3A (RUNDC3A) and similar proteins; RUN ...
 35-202 1.51e-82

RUN domain found in RUN domain-containing protein 3A (RUNDC3A) and similar proteins; RUN domain-containing protein 3A (RUNDC3A), also called Rap2-interacting protein 8 (RPIP8), may act as an effector of Rap2A GTPase in neuronal cells. It contains a RUN domain.


Pssm-ID: 439061  Cd Length: 151  Bit Score: 251.87  E-value: 1.51e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  35 NLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYESPRSFWDYI 114
Cdd:cd17699   1 NLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFK-----------------GPVSWFSSDGQRGFWDYI 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 115 RVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGL 194
Cdd:cd17699  64 RLACSKVPNNCISSIENMENISTSRAKGRAWIRVALMEKRLSEYIATALRDTRTTRRFYDDGAIMLREESTVLTGMLIGL 143


                ....*...
gi 19923090 195 NAIDFSFC 202
Cdd:cd17699 144 SAIDFSFC 151
RUN pfam02759
RUN domain; This domain is present in several proteins that are linked to the functions of ...
 65-205 6.84e-37

RUN domain; This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could hence play important roles in multiple Ras-like GTPase signalling pathways. The domain is comprises six conserved regions, which in some proteins have considerable insertions between them. The domain core is thought to take up a predominantly alpha fold, with basic amino acids in regions A and D possibly playing a functional role in interactions with Ras GTPases.


Pssm-ID: 460679  Cd Length: 134  Bit Score: 132.01  E-value: 6.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090    65 NFAAILEQILSHRLKEISQScrwlahlqiplqgQVTWFGYESPRSFWDYIRVACRKV--SQNCICSIENMENVSS---SR 139
Cdd:pfam02759   1 QLCAALEALLSHGLKRSSLL-------------ILRAAGLLPERSFWALLERVGKLVppAEELLSSVQELEQIHTpysPD 67

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19923090   140 AKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEE-ANMLAGMLLGLNAIDFSFCLKG 205
Cdd:pfam02759  68 GRGRAWIRLALNEKLLDQWLKLLLSNKELLSEYYEPWALLADPEfGEILLGLLVGLSALDFNLCLKL 134
RUN_RUFY1_like cd17681
RUN domain found in RUN and FYVE domain-containing proteins, RUFY1, RUFY2, RUFY3 and similar ...
 32-201 5.82e-34

RUN domain found in RUN and FYVE domain-containing proteins, RUFY1, RUFY2, RUFY3 and similar proteins; This family includes RUN and FYVE domain-containing protein RUFY1, RUFY2, and RUFY3. RUFY1, also called FYVE-finger protein EIP1, or La-binding protein 1, or Rab4-interacting protein (Rabip4), or Zinc finger FYVE domain-containing protein 12 (ZFY12), a human homolog of mouse Rabip4, an effector of Rab4 GTPase that regulates recycling of endocytosed cargo. RUFY1 is an endosomal protein that functions as a dual effector of Rab4 and Rab14 and is involved in efficient recycling of transferrin (Tfn). It is a downstream effector of Etk, a downstream tyrosine kinase of PI3-kinase that is involved in regulation of vesicle trafficking. RUFY2, also called Rab4-interacting protein related, is a novel embryonic factor that is present in the nucleus at early stages of embryonic development. It may have both endosomal functions in the cytoplasm and nuclear functions. RUFY3, also called Rap2-interacting protein x (RIPx or RPIPx), or single axon-regulated protein (singar), is an N-terminal RUN domain and a C-terminal FYVE domain containing protein predominantly expressed in the brain. It suppresses formation of surplus axons for neuronal polarity. Unlike other RUFY proteins, RUFY3 can associate with the GTP-bound active form of Rab5. RUFY1, RUFY2, and RUFY3 contain an N-terminal RUN domain and a C-terminal FYVE domain with two coiled-coil domains in-between; this model represents the RUN domain.


Pssm-ID: 439043  Cd Length: 155  Bit Score: 124.99  E-value: 5.82e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  32 ERRNLITVCRFSVKTLIDRSC-FE-TIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYEspRS 109
Cdd:cd17681   1 ERRNLLNLAKLSIKELIESALsFGrTLDSDHVPLQQFFVILEHVLRHGLK-----------------VKKSFLGPN--KS 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 110 FWDYIRVACRKVS--QNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYIStALRDFKTTRR-FYEDGAIVLGEEANM 186
Cdd:cd17681  62 FWPVLEHVEKLVPeaNEITASVRDLPGIKTPLGRARAWLRLALMQKKLADYFR-ALIENKDLLSeFYEPGALMMSEEAVV 140

                       170
                ....*....|....*
gi 19923090 187 LAGMLLGLNAIDFSF 201
Cdd:cd17681 141 IAGLLVGLNVIDCNL 155
RUN cd17671
RUN domain; RUN domain, named after RPIP8 (Rap2 interacting protein 8), UNC-14 and NESCA (new ...
 43-201 8.41e-25

RUN domain; RUN domain, named after RPIP8 (Rap2 interacting protein 8), UNC-14 and NESCA (new molecule containing SH3 at the carboxyl-terminus), is a less conserved protein motif that comprises six conserved regions, which in some proteins have considerable insertions between them. The domain core is thought to take up a predominantly alpha fold, with basic amino acids in regions A and D possibly playing a functional role in interactions with Ras GTPases. RUN domains are often found in proteins linked particularly to the functions of GTPases in the Rap and Rab families, suggesting the RUN domain may be involved in Rab-mediated membrane trafficking, possibly as a Rab-binding site. RUN domain-containing proteins could hence play important roles in multiple Ras-like GTPase signalling pathways.


Pssm-ID: 439038  Cd Length: 154  Bit Score: 99.81  E-value: 8.41e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  43 SVKTLIDR---------SCFETIDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgqvTWFGyESPRSFWDY 113
Cdd:cd17671   2 AVKELLESfadngeaddSAALTLTDDDPVVGRLCAALEAILSHGLKP-------------------KRFG-GGKVSFWDF 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 114 IRVACRKVSQNCICS----IENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLG-EEANMLA 188
Cdd:cd17671  62 LEALEKLLPAPSLKQairdINSLSNVKTDDGRGRAWIRLALNEKSLESYLAALLSDQSLLRKYYEPWALLRDpEEAELFL 141

                       170
                ....*....|...
gi 19923090 189 GMLLGLNAIDFSF 201
Cdd:cd17671 142 SLLVGLSSLDFNL 154
RUN_RUFY1 cd17694
RUN domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins; ...
 32-202 5.33e-19

RUN domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins; RUFY1, also called FYVE-finger protein EIP1, or La-binding protein 1, or Rab4-interacting protein (Rabip4), or Zinc finger FYVE domain-containing protein 12 (ZFY12), a human homolog of mouse Rabip4, an effector of Rab4 GTPase that regulates recycling of endocytosed cargo. RUFY1 is an endosomal protein that functions as a dual effector of Rab4 and Rab14 and is involved in efficient recycling of transferrin (Tfn). It is a downstream effector of Etk, a downstream tyrosine kinase of PI3-kinase that is involved in regulation of vesicle trafficking. RUFY1 contains an N-terminal RUN domain and a C-terminal FYVE domain with two coiled-coil domains in-between; this model represents the RUN domain.


Pssm-ID: 439056  Cd Length: 156  Bit Score: 83.80  E-value: 5.33e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  32 ERRNLITVCRFSVKTLIDR--SCFETIDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgQVTWFGYEspRS 109
Cdd:cd17694   1 ERANLMNMMKLSIKVLIQSalSLGRTLDSDYPPLQQFFVVLEHCLKHGLKV-----------------KKSFIGQN--KS 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 110 FW---DYIRVACRKVSqNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANM 186
Cdd:cd17694  62 FFgplELVEKLCPEAS-DIATSARNLPELKTAVGRGRAWLHLALMQKKLADYLKVLIDRKDLLSEFYEPGALMMEEEGAV 140

                       170
                ....*....|....*.
gi 19923090 187 LAGMLLGLNAIDFSFC 202
Cdd:cd17694 141 IVGLLVGLNVIDANLC 156
RUN_RUFY3 cd17696
RUN domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins; ...
 32-202 9.43e-19

RUN domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins; RUFY3, also called Rap2-interacting protein x (RIPx or RPIPx), or single axon-regulated protein (singar), is an N-terminal RUN domain and a C-terminal FYVE domain containing protein predominantly expressed in the brain. It suppresses formation of surplus axons for neuronal polarity. Unlike other RUFY proteins, RUFY3 can associate with the GTP-bound active form of Rab5. This model represents the RUN domain of RUFY3.


Pssm-ID: 439058  Cd Length: 156  Bit Score: 83.12  E-value: 9.43e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  32 ERRNLITVCRFSVKTLIDRSCF--ETIDDSSPEFNNFAAILEQILSHRLKeisqscrwlahlqiplqGQVTWFGYEspRS 109
Cdd:cd17696   1 ERMNLMNMAKLSIKGLIESALNlgRTLDSDYAPLQQFFVVMEHCLKHGLK-----------------AKKTFLGQN--KS 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 110 FWDYIRVACRKVSQ--NCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANML 187
Cdd:cd17696  62 FWGPLELVEKLVPEaaEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINRKDLLSEFYEPNALMMEEEGAII 141

                       170
                ....*....|....*
gi 19923090 188 AGMLLGLNAIDFSFC 202
Cdd:cd17696 142 AGLLVGLNVIDANFC 156
RUN_RUFY2 cd17695
RUN domain found in RUN and FYVE domain-containing protein 2 (RUFY2) and similar proteins; ...
 32-202 1.33e-18

RUN domain found in RUN and FYVE domain-containing protein 2 (RUFY2) and similar proteins; RUFY2, also called Rab4-interacting protein related, is a novel embryonic factor that contains an N-terminal RUN domain and a C-terminal FYVE domain with two coiled-coil domains in-between. It is present in the nucleus at early stages of embryonic development. It may have both endosomal functions in the cytoplasm and nuclear functions. This model represents the RUN domain of RUFY2.


Pssm-ID: 439057  Cd Length: 156  Bit Score: 82.72  E-value: 1.33e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  32 ERRNLITVCRFSVKTLIDR--SCFETIDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgQVTWFGYEspRS 109
Cdd:cd17695   1 ERANLLNMAKLSIKGLIESalSFGRTLDSDYPPLQQFFVVMEHCLKHGLKV-----------------RKSFLSYN--KT 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 110 FW---DYIRVACRKVSQnCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANM 186
Cdd:cd17695  62 IWgplELVEKLCPEAEE-IAASVRDLPGLKTPLGRARAWLRLALMQKKLADYLRCLIIRRDLLSEFYEYHALMMEEEGAV 140

                       170
                ....*....|....*.
gi 19923090 187 LAGMLLGLNAIDFSFC 202
Cdd:cd17695 141 IVGLLVGLNVIDANLC 156
RUN smart00593
domain involved in Ras-like GTPase signaling;
142-204 1.59e-16

domain involved in Ras-like GTPase signaling;


Pssm-ID: 214736 [Multi-domain]  Cd Length: 64  Bit Score: 73.80  E-value: 1.59e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19923090    142 GRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVL-GEEANMLAGMLLGLNAIDFSFCLK 204
Cdd:smart00593   1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRdPEEGEQLLGLLVGLSALDFNLPVD 64
RUN_SNX29 cd17689
RUN domain found in sorting nexin-29 (SNX29) and similar proteins; SNX29, also called RUN ...
 58-200 6.85e-14

RUN domain found in sorting nexin-29 (SNX29) and similar proteins; SNX29, also called RUN domain-containing protein 2A (RUNDC2A), belongs to the sorting nexin family. Sorting nexins are a large group of proteins that are localized in the cytoplasm and have the potential for membrane association either through their lipid-binding PX domain, a phospholipid-binding motif, or through protein-protein interactions with membrane-associated protein complexes. Some sorting nexin family members have been shown to facilitate protein sorting. This model contains the RUN domain of SNX29.


Pssm-ID: 439051  Cd Length: 166  Bit Score: 69.18  E-value: 6.85e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  58 DSSPEFNNFAAILEQILSHRLKEISQSCRWLAHLQIPLQGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENmenVSS 137
Cdd:cd17689  22 ESDSRVSCLCAQLEAVLQHGLKTSRSPNLVSSAVTQVSGLAGSLGSAETEPTFWPFVKEHLTKHELERFELLKN---IWT 98

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19923090 138 SRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEE-ANMLAGMLLGLNAIDFS 200
Cdd:cd17689  99 DIGRGRAWLRSALNEHSLERYLHILLSNENLLRQYYEDWAFLRDEErSSMLPNMAAGLGSILFA 162
RUN_PLEKHM2 cd17680
RUN domain found in pleckstrin homology domain-containing family M member 2 (PLEKHM2) and ...
 108-201 1.27e-10

RUN domain found in pleckstrin homology domain-containing family M member 2 (PLEKHM2) and similar proteins; PLEKHM2, also called PH domain-containing family M member 2, or Salmonella-induced filaments A (SifA) and Kinesin-Interacting Protein (SKIP), is the lysosome, melanosome and lytic granule cargo adaptor that controls lysosome positioning using a composite kinesin-1 heavy and light chain-binding domain. In addition to kinesin-1, it also interacts with several Rabs to affect endosomal trafficking. This model represents the RUN domain of PLEKHM2.


Pssm-ID: 439042  Cd Length: 145  Bit Score: 59.56  E-value: 1.27e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 108 RSFWDYIRVACRKvsqNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEA-NM 186
Cdd:cd17680  54 RGYWPFVKEFTHK---ETIKQIENLPNVTTDLGRGRAWLYLALNEGSLESYLRSFLENRKLVKKFYHKHALLRDSQRlEL 130

                        90
                ....*....|....*
gi 19923090 187 LAGMLLGLNAIDFSF 201
Cdd:cd17680 131 LLTLLSGLEFVQFDL 145
RUN_PLEKHM1 cd17679
RUN domain found in pleckstrin homology domain-containing family M member 1 (PLEKHM1) and ...
 43-201 1.56e-10

RUN domain found in pleckstrin homology domain-containing family M member 1 (PLEKHM1) and similar proteins; PLEKHM1, also called PH domain-containing family M member 1, or 162 kDa adapter protein (AP162), may act as a multivalent adapter protein that regulates Rab7-dependent and HOPS complex-dependent fusion events in the endolysosomal system and couples autophagic and the endocytic trafficking pathways. This model represents the RUN domain of PLEKHM1.


Pssm-ID: 439041 [Multi-domain]  Cd Length: 171  Bit Score: 59.91  E-value: 1.56e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  43 SVKTLIDRSCF--ETIDDSSPEFNNFAAILEQILSHRLKEiSQSCRWLAHLQIPLQGqvtwfgYESPrSFWDYIRVACRK 120
Cdd:cd17679  11 SVKELQLEYVSsdEVVTSSDDGANTLCCVLEAIFLHGLKD-KFISKVSSVFSGDVDK------LPEP-NFWPLLLKFSHR 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 121 vsqNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVL-GEEANMLAGMLLGLNAIDF 199
Cdd:cd17679  83 ---DVIDQIEHLSQITTDVGRCRAWIRLALNDGLLESYLEAILKDKSALKSYYNPSAFLRdPEQLDILKSLLQGLESFQF 159


                ..
gi 19923090 200 SF 201
Cdd:cd17679 160 EL 161
RUN_RUFY4_like cd17682
RUN domain found in RUN and FYVE domain-containing protein 4 (RUFY4), FYVE and coiled-coil ...
 54-201 6.34e-10

RUN domain found in RUN and FYVE domain-containing protein 4 (RUFY4), FYVE and coiled-coil domain-containing protein 1 (FYCO1), and similar proteins; The family includes RUFY4 and FYCO1. RUFY4 acts as a positive regulator that enhances autophagy and lysosome tethering in response to Interleukin-4. It is expressed in a cell-specific manner or under specific immunological conditions associated with IL4 expression such as allergic asthma. FYCO1, also called zinc finger FYVE domain-containing protein 7 (ZFYVE7), is a multidomain autophagy adaptor protein that interacts with kinesin motor proteins and with the autophagosomal membrane components microtubule-associated protein 1 light chain 3 (LC3), Rab7, and phosphatidylinositol 3-phosphate (PI3P), to mediate microtubule plus-end-directed autophagosome transport. Both RUFY4 and FYCO1 contain an N-terminal RUN domain and a C-terminal FYVE domain with two coiled-coil domains in-between; this model represents the RUN domain.


Pssm-ID: 439044  Cd Length: 150  Bit Score: 57.62  E-value: 6.34e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  54 ETIDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgQVTWFGYEspRSFWDYIRvACRKVSQ-------NCI 126
Cdd:cd17682  15 EITDPDNPYLRPFCETLEKILRKGLKE-----------------KVSLGGRR--KDYWDWLE-ELLKKLNkipkslsDAV 74

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923090 127 CSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANM-LAGMLLGLNAIDFSF 201
Cdd:cd17682  75 KFVKSCKKVKTNQGRGRLFIRYALNKKCLHDPVQQLVKNPKLLSDYYSPDSILGNEILSEiLLSLLYQLNEINFDL 150
RUN1_DENND5B cd17691
RUN1 domain found in DENN domain-containing protein 5B (DENND5B) and similar proteins; DENND5B, ...
 36-203 6.43e-08

RUN1 domain found in DENN domain-containing protein 5B (DENND5B) and similar proteins; DENND5B, also called Rab6-interacting protein 1 (Rab6IP1)-like protein, functions in membrane trafficking at a crossroads between the Golgi and the endosomal system. It is composed of an N-terminal DENN (Differentially Expressed in Normal and Neoplastic cells) domain followed by two RUN (RPIP8 [RaP2-interacting protein 8], UNC-14, and NESCA [new molecule containing SH3 at the carboxyl terminus]) domains flanking a PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain. This model represents the first RUN domain of DENND5B.


Pssm-ID: 439053 [Multi-domain]  Cd Length: 206  Bit Score: 52.75  E-value: 6.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  36 LITVCRFSVK-TLIDRSCFETIDDSSPEFN-----------NFAAILEQILSHRLK-EISQSCRWLAHLQIPLQGQVTWF 102
Cdd:cd17691  13 LLKECRMKTKrMLVEKMGHEAVELGHGEANitgleentliaSLCDLLERIWSHGLQvKQGKSALWSHLLHFQEREEKQEH 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 103 GYESP-------RSFWDYIRVACRKVS--QNcICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFY 173
Cdd:cd17691  93 VAESPvanglerRKSETGVNLPTLRVSliQD-MRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQALTKKLY 171

                       170       180       190
                ....*....|....*....|....*....|.
gi 19923090 174 EDGAIV-LGEEANMLAGMLLGLNAIDFsFCL 203
Cdd:cd17691 172 KRYAFLrCEEEKEQFLYHLLSLNAVDY-FCF 201
RUN1_DENND5 cd17677
RUN1 domain found in DENN domain-containing protein 5 (DENND5) and similar proteins; DENND5 ...
 128-202 1.16e-06

RUN1 domain found in DENN domain-containing protein 5 (DENND5) and similar proteins; DENND5 has been characterized as Rab6-interacting protein which is composed of an N-terminal DENN (Differentially Expressed in Normal and Neoplastic cells) domain followed by two RUN (RPIP8 [RaP2-interacting protein 8], UNC-14, and NESCA [new molecule containing SH3 at the carboxyl terminus]) domains flanking a PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain. It functions in membrane trafficking at a crossroads between the Golgi and the endosomal system. DENND5 has two isoforms, DENND5A and DENND5B. This model represents the first RUN domain of DENND5.


Pssm-ID: 439039  Cd Length: 183  Bit Score: 48.93  E-value: 1.16e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923090 128 SIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGE-EANMLAGMLLGLNAIDFsFC 202
Cdd:cd17677 103 NVQNMKEIKTDVGYARAWIRLALEKKLLSKHLKTLLSNQDLLRSLYKRYAFLRCEdEREQFLYHLLSLNAVDY-FC 177
RUN_RUFY4 cd17697
RUN domain found in RUN and FYVE domain-containing protein 4 (RUFY4) and similar proteins; ...
 56-199 1.12e-05

RUN domain found in RUN and FYVE domain-containing protein 4 (RUFY4) and similar proteins; RUFY4 acts as a positive regulator that enhances autophagy and lysosome tethering in response to Interleukin-4. It is expressed in a cell-specific manner or under specific immunological conditions associated with IL4 expression such as allergic asthma. RUFY4 belongs to the FUFY protein family which is characterized by the presence of an N-terminal RUN domain and a C-terminal FYVE domain; this model represents the RUN domain of RUFY4.


Pssm-ID: 439059  Cd Length: 150  Bit Score: 45.17  E-value: 1.12e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  56 IDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgQVTWFGyeSPRSFWDYIRVACRKVSQ--NCICSIENME 133
Cdd:cd17697  21 ITDGSPELHRLCARLEYLLQFDQKE-----------------KKSFFG--SRKDYWDFLCLCLNRHRGgtEGIHFVNSTD 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19923090 134 NVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEE-ANMLAGMLLGLNAIDF 199
Cdd:cd17697  82 KLKTPLGKGRAFIRYCLVQQQLAESLQLCLLNPELTGEWYYARSPFLSPElRSDILDSLYELNGVNF 148
RUN1_DENND5A cd17690
RUN1 domain found in DENN domain-containing protein 5A (DENND5A) and similar proteins; DENND5A, ...
 69-203 2.14e-05

RUN1 domain found in DENN domain-containing protein 5A (DENND5A) and similar proteins; DENND5A, also called Rab6-interacting protein 1 (Rab6IP1), is present predominantly in developing neuronal tissue, and functions in membrane trafficking at a crossroads between the Golgi and the endosomal system. It is composed of an N-terminal DENN (Differentially Expressed in Normal and Neoplastic cells) domain followed by two RUN (RPIP8 [RaP2-interacting protein 8], UNC-14, and NESCA [new molecule containing SH3 at the carboxyl terminus]) domains flanking a PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain. This model represents the first RUN domain of DENND5A.


Pssm-ID: 439052 [Multi-domain]  Cd Length: 209  Bit Score: 45.39  E-value: 2.14e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  69 ILEQILSHRLK-EISQSCRW--LAHLQIPLQGQVTWFGYESPRSFWDYIRvacRKVSQNCICS------------IENME 133
Cdd:cd17690  58 LLERIWSHGLQvKQGKSALWshLLHYQENRERKTTSSGLSTSGIILDSER---RKSDASLAMPplkisliqdmrhIQNIG 134

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19923090 134 NVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIV-LGEEANMLAGMLLGLNAIDFsFCL 203
Cdd:cd17690 135 EIKTDVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLrCDDEKEQFLYHLLSFNAVDY-FCF 204
RUN_SGSM1_like cd17687
RUN domain found in small G protein signaling modulators, SGSM1, SGSM2, and similar proteins; ...
 145-200 2.94e-05

RUN domain found in small G protein signaling modulators, SGSM1, SGSM2, and similar proteins; SGSM1, also called RUN and TBC1 domain-containing protein 2 (RUTBC2), interacts with numerous Rab family members, functioning as Rab effector for some, and as GTPase activator for others. It is a Rab9A effector and GTPase-activating protein for Rab36, and links Rab9A function to Rab36 function in the endosomal system. SGSM2, also called RUN and TBC1 domain-containing protein 1 (RUTBC1), is a GTPase-activating protein for Rab32/38, and regulates melanogenic enzyme trafficking in melanocytes. It also acts as a Rab9A effector that activates GTP hydrolysis by Rab32 and Rab33B proteins. This model contains the RUN domain of SGSM1 and SGSM2.


Pssm-ID: 439049  Cd Length: 161  Bit Score: 44.20  E-value: 2.94e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090 145 WIRVALMEKHLS---EYIStalrdfKTTRRFYEDGAIVL-GEEANMLAGMLLGLNAIDFS 200
Cdd:cd17687 107 WIRIALFEKVLDkivDYLV------ENASKYYEKEALMAdPVDGPLLASLLVGPCALDYT 160
RUN_RUBCN cd17686
RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing ...
 63-197 1.05e-04

RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; RUBCN, also called rubicon, or beclin-1 associated RUN domain containing protein (Baron), is part of a Beclin-1-Vps34-containing autophagy complex. It negatively regulates endosome maturation and degradative endocytic trafficking and impairs autophagosome maturation process. It is also an important negative regulator of the innate immune response, enhances viral replication and may play a role in viral immune evasion. This model contains the RUN domain of RUBCN.


Pssm-ID: 439048  Cd Length: 151  Bit Score: 42.26  E-value: 1.05e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  63 FNNFAAILEQILSHRLKEISQSCRwlahlqiplqgqvtwfgyesPRSFWDYIRVACRK--VSQNCICSIENM-ENVSSSR 139
Cdd:cd17686  21 LQRLCRAVENILQHGLKEFQGLNK--------------------EIDDWEFVQGLRWLqpTLAPSIEQQSRSsPSESEVS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 19923090 140 AKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIvLGEEANMLAgMLLGLNAI 197
Cdd:cd17686  81 DKGRLWLRQSLQQHCLSSQLQWLVSDKELLRKYYEDEAF-LRQEGYATA-LLICLTAV 136
RUN_FYCO1 cd17698
RUN domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar ...
 54-199 1.76e-04

RUN domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar proteins; FYCO1, also called zinc finger FYVE domain-containing protein 7 (ZFYVE7), is a multidomain autophagy adaptor protein that interacts with kinesin motor proteins and with the autophagosomal membrane components microtubule-associated protein 1 light chain 3 (LC3), Rab7, and Phosphatidylinositol 3-phosphate (PI3P), to mediate microtubule plus-end-directed autophagosome transport. This model represents the RUN domain of FYCO1.


Pssm-ID: 439060  Cd Length: 158  Bit Score: 41.99  E-value: 1.76e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923090  54 ETIDDSSPEFNNFAAILEQILSHRLKEisqscrwlahlqiplqgQVTWFGyeSPRSFWDYIRVACRKV--SQNCICSIEN 131
Cdd:cd17698  27 EPITDDSTTLHKFCAKLEYLLQFDQKE-----------------KTTLLG--GRKDYWDYFCECLAKVkgLNDGIRFVKS 87

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19923090 132 MENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANM-LAGMLLGLNAIDF 199
Cdd:cd17698  88 LKEVRTSLGKGRAFIRYSLVHQRLADTLQQCVMNGKVTSDWYYPRSVFLNHKYSSdIINSLYDLNEVQF 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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