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Conserved domains on  [gi|254675300|ref|NP_598708|]
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nuclear mitotic apparatus protein 1 isoform b [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HkD_NuMA cd22224
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also ...
 6-151 1.15e-49

Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles, and the alignment and segregation of chromosomes during mitotic cell division. The model corresponds to the N-terminal conserved globular Hook domain of NuMA, which folds as a variant of the helical calponin homology (CH) domain. It directly binds dynein light intermediate chains LIC1 and LIC2 through a conserved hydrophobic patch shared among other Hook adaptors.


:

Pssm-ID: 411795  Cd Length: 148  Bit Score: 173.53  E-value: 1.15e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300    6 TRAATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTIHDTKEGQQILQQPLPERLDFVCSFLQKNRKHPSSTQCLVSVQ 85
Cdd:cd22224     2 TKAEALLSWVNSLKLDDPIESISQLQDGTILLKIIYKLKGEEEEEQILDLSVEERLEFISSFLEGDCRFNSSQGTLVSWQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300   86 KVIEG--SEMELAKMIMLFLYQSTMSSRNlrDWEQFEYGVQAELAVILKFMLDHEESLNLTEDLESFL 151
Cdd:cd22224    82 KILQGenLELELAKVLLLLLYHSMMNNNL--TLEKLDYKTELELASILRFVLDNEDGLYLSEGLDKFL 147
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 554-1323 1.09e-27

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 122.86  E-value: 1.09e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   554 LKLKEQQlEEAAKEQEATRQDHAQQLAIVAEAREA--SL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:TIGR02168  168 SKYKERR-KETERKLERTRENLDRLEDILNELERQlkSLeRQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLkaeQQKTTEREKVVQEKAQLQEQLRALEESLKITKG 710
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEA 323

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   711 SLEEEKRRaadaLKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHqaetEALRHELAEATASQ 790
Cdd:TIGR02168  324 QLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   871 AIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASlELLKEPPRAANRASDQLGEQQGRPFSST 950
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVEN 554

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   951 -HAAVKAMEREAEQMGG-----ELERLRAALIKSQGQQQEERGQQEREVA-RLTQERGQAQADL---------------A 1008
Cdd:TIGR02168  555 lNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALsyllggvlvvddldnA 634

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1009 QEKAAKAELEMRLQnTLNEQRVE---FAALQEALAHALTekEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKE 1085
Cdd:TIGR02168  635 LELAKKLRPGYRIV-TLDGDLVRpggVITGGSAKTNSSI--LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1086 KEHPAGGASGEDASgpGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQG 1165
Cdd:TIGR02168  712 EELEQLRKELEELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:TIGR02168  790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1246 ELKRLVVAESEKSQKLEERLRLL--QVETASNSARAAE-RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELG 1322
Cdd:TIGR02168  870 ELESELEALLNERASLEEALALLrsELEELSEELRELEsKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949


                   .
gi 254675300  1323 Q 1323
Cdd:TIGR02168  950 S 950
NuMA_LGNBD cd22298
LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; ...
 1852-1910 4.55e-26

LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear matrix protein-22 (NMP-22), nuclear mitotic apparatus protein 1 (NUMA1), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of spindle poles and the alignment and segregation of chromosomes during mitotic cell division. It is involved in the establishment of mitotic spindle orientation during metaphase, and elongation during anaphase in a dynein-dynactin-dependent manner. NuMA, in complex with LGN, forms NuMA:LGN hetero-hexamers that promote spindle orientation. The model corresponds to the LGN binding domain (LGNBD) of NuMA. LGN (named for leu-gly-asn repeats) is also known as G protein signaling modulator 2.


:

Pssm-ID: 412093  Cd Length: 56  Bit Score: 102.68  E-value: 4.55e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1852 LLSLPGYRPTTRSSARRSQarmSSGAPQGRNSFYMGTCQDEPEQLDDWNRIAELQQRNR 1910
Cdd:cd22298     1 LLSLPGYRPSTRSSTRRSQ---SSSATGGRSTFYMGTCQDEPEHLDDWNRIAELQQRNR 56
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1117-1638 2.60e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.49  E-value: 2.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196   240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVA-ESEKSQKLEERLRLLQ--VETA 1273
Cdd:COG1196   320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaEEELEELAEELLEALRaaAELA 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1274 SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:COG1196   400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAEL--------------MRAQRELGELGSLRQKIVEQERAA 1419
Cdd:COG1196   480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaaYEAALEAALAAALQNIVVEDDEVA 559

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1420 QQ----LRAEKASYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQE 1493
Cdd:COG1196   560 AAaieyLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1494 AQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQT 1573
Cdd:COG1196   640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1574 QLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQnqklQEQLQDLEELQKENKELRSEAERLG 1638
Cdd:COG1196   720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEE----LPEPPDLEELERELERLEREIEALG 780
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 213-814 1.97e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.24  E-value: 1.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALlnekqaassqepsELEELRGKNESLTVRLHE 292
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELAR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  293 TLKQCQNLKTEKSQMDRKISQLSEENgdlsfkvrefanhlqqlqgafndlieehskasQEWAEKQARLENELSTALQDKK 372
Cdd:COG1196   300 LEQDIARLEERRRELEERLEELEEEL--------------------------------AELEEELEELEEELEELEEELE 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  373 CLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLEcergKQEAQLLAER 452
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEEL 423

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  453 SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT 532
Cdd:COG1196   424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  533 MQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLE 612
Cdd:COG1196   504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  613 SLQ-QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashqeqrqVQARVTELEAQLKAEQQKTTEREKVVQEK 691
Cdd:COG1196   584 ARAaLAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----------GRTLVAARLEAALRRAVTLAGRLREVTLE 652

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  692 AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:COG1196   653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 254675300  772 HQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:COG1196   733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
PRK06975 super family cl35524
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 1552-1740 2.07e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


The actual alignment was detected with superfamily member PRK06975:

Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.17  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1552 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQaaehyKLQMEKAKThydakkqqnQKLQEQLQDLeeLQKENKELR 1631
Cdd:PRK06975  357 QRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDG-----KLADAQSAQ---------QALEQQYQDL--SRNRDDWMI 420

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1632 SEAERLgreLQQAGLKTkeaeqtcrHLTAQVRSLEAQVAHADQQLRDLGKFQVAT---------DALKSrepqvKPQLDL 1702
Cdd:PRK06975  421 AEVEQM---LSSASQQL--------QLTGNVQLALIALQNADARLATSDSPQAVAvrkaiaqdiERLKA-----APSADL 484

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300 1703 S------------IDSLDLSLEEGTPCSVASKLPRTQPDGTSVPGEPASP 1740
Cdd:PRK06975  485 TglaiklddaiakIDALPLSGEALPPHATMAAAPAAAAAAAAAAAAAGEP 534
 
Name Accession Description Interval E-value
HkD_NuMA cd22224
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also ...
 6-151 1.15e-49

Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles, and the alignment and segregation of chromosomes during mitotic cell division. The model corresponds to the N-terminal conserved globular Hook domain of NuMA, which folds as a variant of the helical calponin homology (CH) domain. It directly binds dynein light intermediate chains LIC1 and LIC2 through a conserved hydrophobic patch shared among other Hook adaptors.


Pssm-ID: 411795  Cd Length: 148  Bit Score: 173.53  E-value: 1.15e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300    6 TRAATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTIHDTKEGQQILQQPLPERLDFVCSFLQKNRKHPSSTQCLVSVQ 85
Cdd:cd22224     2 TKAEALLSWVNSLKLDDPIESISQLQDGTILLKIIYKLKGEEEEEQILDLSVEERLEFISSFLEGDCRFNSSQGTLVSWQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300   86 KVIEG--SEMELAKMIMLFLYQSTMSSRNlrDWEQFEYGVQAELAVILKFMLDHEESLNLTEDLESFL 151
Cdd:cd22224    82 KILQGenLELELAKVLLLLLYHSMMNNNL--TLEKLDYKTELELASILRFVLDNEDGLYLSEGLDKFL 147
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 554-1323 1.09e-27

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 122.86  E-value: 1.09e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   554 LKLKEQQlEEAAKEQEATRQDHAQQLAIVAEAREA--SL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:TIGR02168  168 SKYKERR-KETERKLERTRENLDRLEDILNELERQlkSLeRQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLkaeQQKTTEREKVVQEKAQLQEQLRALEESLKITKG 710
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEA 323

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   711 SLEEEKRRaadaLKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHqaetEALRHELAEATASQ 790
Cdd:TIGR02168  324 QLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   871 AIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASlELLKEPPRAANRASDQLGEQQGRPFSST 950
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVEN 554

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   951 -HAAVKAMEREAEQMGG-----ELERLRAALIKSQGQQQEERGQQEREVA-RLTQERGQAQADL---------------A 1008
Cdd:TIGR02168  555 lNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALsyllggvlvvddldnA 634

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1009 QEKAAKAELEMRLQnTLNEQRVE---FAALQEALAHALTekEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKE 1085
Cdd:TIGR02168  635 LELAKKLRPGYRIV-TLDGDLVRpggVITGGSAKTNSSI--LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1086 KEHPAGGASGEDASgpGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQG 1165
Cdd:TIGR02168  712 EELEQLRKELEELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:TIGR02168  790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1246 ELKRLVVAESEKSQKLEERLRLL--QVETASNSARAAE-RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELG 1322
Cdd:TIGR02168  870 ELESELEALLNERASLEEALALLrsELEELSEELRELEsKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949


                   .
gi 254675300  1323 Q 1323
Cdd:TIGR02168  950 S 950
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 515-1129 8.39e-27

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 119.66  E-value: 8.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  515 LASLKEQAKK-EQAQMLQTmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEqeatrqdhaqqlaivAEAREASLRER 593
Cdd:COG1196   202 LEPLERQAEKaERYRELKE-ELKELEAELLLLKLRELEAELEELEAELEELEAE---------------LEELEAELAEL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  594 DTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:COG1196   266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  674 LKAEQQkttEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQqcratemeAESRSLMEQREREQKELEQ 753
Cdd:COG1196   346 LEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEALLE 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  754 EKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygamfQEQLMALK 833
Cdd:COG1196   415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL-------AELLEELA 487

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  834 GEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDD-LSALQEKMAATNKEVACLKTLVLK 912
Cdd:COG1196   488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLK 567

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  913 AGEQQETASLELLKEPPRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQERE 992
Cdd:COG1196   568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  993 VARLTQERGQAQADLAQEKAAKaelemrlqntlNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQ 1072
Cdd:COG1196   648 EVTLEGEGGSAGGSLTGGSRRE-----------LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300 1073 TLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLE 1129
Cdd:COG1196   717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
NuMA_LGNBD cd22298
LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; ...
 1852-1910 4.55e-26

LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear matrix protein-22 (NMP-22), nuclear mitotic apparatus protein 1 (NUMA1), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of spindle poles and the alignment and segregation of chromosomes during mitotic cell division. It is involved in the establishment of mitotic spindle orientation during metaphase, and elongation during anaphase in a dynein-dynactin-dependent manner. NuMA, in complex with LGN, forms NuMA:LGN hetero-hexamers that promote spindle orientation. The model corresponds to the LGN binding domain (LGNBD) of NuMA. LGN (named for leu-gly-asn repeats) is also known as G protein signaling modulator 2.


Pssm-ID: 412093  Cd Length: 56  Bit Score: 102.68  E-value: 4.55e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1852 LLSLPGYRPTTRSSARRSQarmSSGAPQGRNSFYMGTCQDEPEQLDDWNRIAELQQRNR 1910
Cdd:cd22298     1 LLSLPGYRPSTRSSTRRSQ---SSSATGGRSTFYMGTCQDEPEHLDDWNRIAELQQRNR 56
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1117-1638 2.60e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.49  E-value: 2.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196   240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVA-ESEKSQKLEERLRLLQ--VETA 1273
Cdd:COG1196   320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaEEELEELAEELLEALRaaAELA 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1274 SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:COG1196   400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAEL--------------MRAQRELGELGSLRQKIVEQERAA 1419
Cdd:COG1196   480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaaYEAALEAALAAALQNIVVEDDEVA 559

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1420 QQ----LRAEKASYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQE 1493
Cdd:COG1196   560 AAaieyLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1494 AQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQT 1573
Cdd:COG1196   640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1574 QLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQnqklQEQLQDLEELQKENKELRSEAERLG 1638
Cdd:COG1196   720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEE----LPEPPDLEELERELERLEREIEALG 780
PTZ00121 PTZ00121
MAEBL; Provisional
 265-937 1.23e-20

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 100.22  E-value: 1.23e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  265 KQAASSQEPSELEELRGKNESLTV----RLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAfn 340
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAeavkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA-- 1280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  341 dliEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKlSQLEDQATRLQEspAPEKGEVLGDALQLDTLKQEA 420
Cdd:PTZ00121 1281 ---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK-KKAEEAKKKADA--AKKKAEEAKKAAEAAKAEAEA 1354

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  421 AKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTS 500
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  501 MTGLNATLQQRDQELASLKEQAKKeqAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLA 580
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  581 ivAEAREAS-LRERDTARQQLETVEKEKDAKLESLQQ--QLQAANDARDNAQtsVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:PTZ00121 1513 --DEAKKAEeAKKADEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEE--KKKAEEAKKAEEDKNMALRKAEEAKK 1588

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQA--RVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEA 735
Cdd:PTZ00121 1589 AEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAE 1665

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  816 QEEARYGAMFQEQLMALKG--EKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKA---IQQVQEKEVRAQKLVDDls 890
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKeeEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIfdnFANIIEGGKEGNLVIND-- 1823

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*..
gi 254675300  891 aLQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASD 937
Cdd:PTZ00121 1824 -SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD 1869
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 213-814 1.97e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.24  E-value: 1.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALlnekqaassqepsELEELRGKNESLTVRLHE 292
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELAR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  293 TLKQCQNLKTEKSQMDRKISQLSEENgdlsfkvrefanhlqqlqgafndlieehskasQEWAEKQARLENELSTALQDKK 372
Cdd:COG1196   300 LEQDIARLEERRRELEERLEELEEEL--------------------------------AELEEELEELEEELEELEEELE 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  373 CLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLEcergKQEAQLLAER 452
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEEL 423

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  453 SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT 532
Cdd:COG1196   424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  533 MQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLE 612
Cdd:COG1196   504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  613 SLQ-QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashqeqrqVQARVTELEAQLKAEQQKTTEREKVVQEK 691
Cdd:COG1196   584 ARAaLAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----------GRTLVAARLEAALRRAVTLAGRLREVTLE 652

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  692 AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:COG1196   653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 254675300  772 HQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:COG1196   733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1003-1681 3.15e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.04  E-value: 3.15e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1003 AQADLAQEKAAKAELEMRLqNTLNEQR---VEFAALQEALAHA-----LTEKEGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:TIGR02168  184 TRENLDRLEDILNELERQL-KSLERQAekaERYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAEL 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1075 EQLKIQLVKKEKEHPAGGASGEDASGpgtqsetagktdapgpELQALRAEISKLEQQCQQQQQQVEGLTHSLKseracra 1154
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQK----------------ELYALANEISRLEQQKQILRERLANLERQLE------- 319

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILN 1234
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1235 rqvlekegeskelKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQ 1314
Cdd:TIGR02168  400 -------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1315 AERAEELGQELKAWQEKFFQKEQ---ALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKrFREELEQSKQAAGG- 1390
Cdd:TIGR02168  467 REELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAAIEAALGg 545

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1391 -LQAELMR------------AQRELG-------------ELGSLRQKIVEQERAAQQLRAEKASYAEQLSM--------- 1435
Cdd:TIGR02168  546 rLQAVVVEnlnaakkaiaflKQNELGrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggv 625

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1436 -----LKKAHGLLAEENRGL-------------------GERANLGRQFLEVELDQAREKY-------------VQELAA 1478
Cdd:TIGR02168  626 lvvddLDNALELAKKLRPGYrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIeeleekiaelekaLAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1479 VRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKV---LEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLK 1555
Cdd:TIGR02168  706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVeqlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1556 AFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAE 1635
Cdd:TIGR02168  786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300  1636 RLGRELQ---QAGLKTKEAEQTCRH--------LTAQVRSLEAQVAHADQQLRDLGK 1681
Cdd:TIGR02168  866 ELIEELEselEALLNERASLEEALAllrseleeLSEELRELESKRSELRRELEELRE 922
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 211-844 3.62e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 88.58  E-value: 3.62e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALLNEKQAASSQEPS--------ELEELRGK 282
Cdd:TIGR02168  308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELEsrleeleeQLETLRSK 387

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   283 NESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANH------------LQQLQGAFNDLIEEHSKAS 350
Cdd:TIGR02168  388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeleeleeeLEELQEELERLEEALEELR 467

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   351 QEWAEKQARL---ENELSTALQDKKCLEEKNEILQG----------KLSQLEDQATRLQESPAPEKG------EVLGDAL 411
Cdd:TIGR02168  468 EELEEAEQALdaaERELAQLQARLDSLERLQENLEGfsegvkallkNQSGLSGILGVLSELISVDEGyeaaieAALGGRL 547

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   412 Q-------------LDTLKQEAAKLATD---NTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSN 475
Cdd:TIGR02168  548 QavvvenlnaakkaIAFLKQNELGRVTFlplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV 627

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   476 LSQAKEELEQASQAQGAQLTAQLT--------SMTG----LNATLQQRDQELASLKEQakkeQAQMLQTMQEQEQAAQGL 543
Cdd:TIGR02168  628 VDDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGgsakTNSSILERRREIEELEEK----IEELEEKIAELEKALAEL 703

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   544 RQQVEQLSSSLKLKEQQLEEAAKEQEATRQDhAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND 623
Cdd:TIGR02168  704 RKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   624 ARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQ-----------QKTTEREKVVQEKA 692
Cdd:TIGR02168  783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrledleeqieELSEDIESLAAEIE 862

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   693 QLQEQLRALE---ESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:TIGR02168  863 ELEELIEELEselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   770 EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRF--------EARQQEEARYGAMFQEQLMALKGEKTGQEV 841
Cdd:TIGR02168  943 ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022


                   ...
gi 254675300   842 QEE 844
Cdd:TIGR02168 1023 IEE 1025
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
243-750 3.78e-13

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 75.08  E-value: 3.78e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  243 TEKDAQIAMMQQRIDHlALLNEKQAASSQEPSELEEL----------RGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS 312
Cdd:PRK02224  190 DQLKAQIEEKEEKDLH-ERLNGLESELAELDEEIERYeeqreqaretRDEADEVLEEHEERREELETLEAEIEDLRETIA 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  313 QLSEENGDLSFKVREFANHLQQLQGAFNDL----------IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQ 382
Cdd:PRK02224  269 ETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  383 GKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQL 462
Cdd:PRK02224  349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  463 ASLIADLQSSVSNLSQAKEELEQA--------------------SQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQA 522
Cdd:PRK02224  429 AELEATLRTARERVEEAEALLEAGkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  523 K-----KEQAQMLQ--------TMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaiVAEAREAS 589
Cdd:PRK02224  509 DrierlEERREDLEeliaerreTIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE--------EVAELNSK 580

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  590 LRERDTARQQLETVEkEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACI-EASHQEQRQVQARVT 668
Cdd:PRK02224  581 LAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAE 659

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  669 ELEAQLKAE-QQKTTEREKVVQEKAQLQEQLRALEEsLKITKGSLeEEKRRAADALKEQQCRATEMEAESRSLMEQRERE 747
Cdd:PRK02224  660 EYLEQVEEKlDELREERDDLQAEIGAVENELEELEE-LRERREAL-ENRVEALEALYDEAEELESMYGDLRAELRQRNVE 737


                  ...
gi 254675300  748 QKE 750
Cdd:PRK02224  738 TLE 740
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 512-1339 4.40e-12

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 71.93  E-value: 4.40e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   512 DQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQlAIVAEAREASLR 591
Cdd:pfam02463  159 EEEAAGSRLKRKKKEAL-KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-YLLYLDYLKLNE 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   592 ERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacIEASHQEQRQVQARVTELE 671
Cdd:pfam02463  237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE---EEELKSELLKLERRKVDDE 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   672 AQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKEL 751
Cdd:pfam02463  314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   752 EQEKAGRKGLEARIQqlEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMA 831
Cdd:pfam02463  394 EEELELKSEEEKEAQ--LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   832 LKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEK-----------------EVRAQKLVDDLSALQE 894
Cdd:pfam02463  472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDgvggriisahgrlgdlgVAVENYKVAISTAVIV 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   895 KMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPF--SSTHAAVKAMEREAEQMGGELERLR 972
Cdd:pfam02463  552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNlaQLDKATLEADEDDKRAKVVEGILKD 631

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   973 AALIKSQGQQQEERGQQEREVARL-----TQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKE 1047
Cdd:pfam02463  632 TELTKLKESAKAKESGLRKGVSLEeglaeKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1048 GTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpagGASGEDASGPGTQSETAGKTDAPGPELQALRAEISK 1127
Cdd:pfam02463  712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE----EEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1128 LEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKA 1207
Cdd:pfam02463  788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1208 QVARG------QQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAE 1281
Cdd:pfam02463  868 LLQELllkeeeLEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  1282 RSSA------LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQAL 1339
Cdd:pfam02463  948 KEKEennkeeEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAI 1011
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 450-648 8.99e-12

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 71.02  E-value: 8.99e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  450 AERSRFEDEKQQLASLIADLQSSVSNLSQAKeeLEQASQAQGAQL-------TAQLTSMT-GLNAtLQQRDQELASLKEQ 521
Cdd:NF012221 1569 ADRQRLEQEKQQQLAAISGSQSQLESTDQNA--LETNGQAQRDAIleesravTKELTTLAqGLDA-LDSQATYAGESGDQ 1645

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  522 AKKEQAQ-MLQTMQEQ-EQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQ-----QLAIVAEAREASLRERD 594
Cdd:NF012221 1646 WRNPFAGgLLDRVQEQlDDAKKISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQGEQnqanaEQDIDDAKADAEKRKDD 1725

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 254675300  595 TARQQLETVEKEKDAKLESLQQQLQAANDARdNAQTSVTQAQQEKAELSQKIGE 648
Cdd:NF012221 1726 ALAKQNEAQQAESDANAAANDAQSRGEQDAS-AAENKANQAQADAKGAKQDESD 1778
PTZ00121 PTZ00121
MAEBL; Provisional
 1144-1653 5.83e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.24  E-value: 5.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1144 HSLKSERACRAEQDKALETLQGQLEEKARElgHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLI 1223
Cdd:PTZ00121 1056 HEGKAEAKAHVGQDEGLKPSYKDFDFDAKE--DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEA 1133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1224 SSLEEEVSIlnrqvlEKEGESKELKRLVVA-ESEKSQKLEERLRLLQVETASNSARAAERSSAlrEEVQSLRE--EVEKQ 1300
Cdd:PTZ00121 1134 RKAEDARKA------EEARKAEDAKRVEIArKAEDARKAEEARKAEDAKKAEAARKAEEVRKA--EELRKAEDarKAEAA 1205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1301 RVVSENSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcQQLQAEQAAAEKRFREE 1380
Cdd:PTZ00121 1206 RKAEEERKAEEARKAEDAKKA-EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF--ARRQAAIKAEEARKADE 1282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1381 LEQSKQAAgglQAELMRAQRELGELGSLRQKiVEQERAAQQLRAEKASYAEQLSMLKKAhgllAEENRGLGERAnlgrqf 1460
Cdd:PTZ00121 1283 LKKAEEKK---KADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKK----AEEAKKAAEAA------ 1348

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1461 leveldqarekyvqelaavrtdaethlaemRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKL--TAQVEELSK 1538
Cdd:PTZ00121 1349 ------------------------------KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAeeKKKADEAKK 1398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1539 KLTEHDQasKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQ 1618
Cdd:PTZ00121 1399 KAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476

                         490       500       510
                  ....*....|....*....|....*....|....*...
gi 254675300 1619 DLEELQKENKELRSEAERLGR---ELQQAGLKTKEAEQ 1653
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKkadEAKKAAEAKKKADE 1514
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 1146-1652 1.94e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 59.74  E-value: 1.94e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1146 LKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQREL--QALRAKAQDHSKAEEEWKaQVARGQQEAERKsslI 1223
Cdd:pfam05483  160 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELrvQAENARLEMHFKLKEDHE-KIQHLEEEYKKE---I 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1224 SSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLlqveTASNSARAAERSSALREEVQSLREEVEKQRVV 1303
Cdd:pfam05483  236 NDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKL----QDENLKELIEKKDHLTKELEDIKMSLQRSMST 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1304 SENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKhlcqqlqaeqaaaekrfREELEQ 1383
Cdd:pfam05483  312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTE-----------------QQRLEK 374

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1384 SKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKasyaEQLSMLKKAHGLLAEENRGLGERAnlgrqfleV 1463
Cdd:pfam05483  375 NEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAED----EKLLDEKKQFEKIAEELKGKEQEL--------I 442

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1464 ELDQAREKYVQELaavrtdaETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLE---ERQRFQEERQKLTAQVEELSKKL 1540
Cdd:pfam05483  443 FLLQAREKEIHDL-------EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEltaHCDKLLLENKELTQEASDMTLEL 515

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1541 TEHDQ----ASKVQQQKLKAFQA-------QRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ 1609
Cdd:pfam05483  516 KKHQEdiinCKKQEERMLKQIENleekemnLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 254675300  1610 NQKLQEQLQD----LEELQKENKELRSEAERLGRELQQAGLKTKEAE 1652
Cdd:pfam05483  596 CNNLKKQIENknknIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 252-817 2.47e-08

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 59.42  E-value: 2.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   252 MQQRIDHLALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS----QLSEENGDLSFKVRE 327
Cdd:pfam01576    7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAarkqELEEILHELESRLEE 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   328 FANHLQQLQGafndlieEHSKASQEWAEKQARLENELST--ALQ-DKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKG 404
Cdd:pfam01576   87 EEERSQQLQN-------EKKKMQQHIQDLEEQLDEEEAArqKLQlEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEE 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   405 EVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQllaeRSRFEDEKQQLASLIADLQSSVSNLSQAKEELE 484
Cdd:pfam01576  160 RISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKG----RQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   485 QASQAQGAQLTAQLTSM---TGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkEQQL 561
Cdd:pfam01576  236 AQLAKKEEELQAALARLeeeTAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL---EDTL 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   562 EEAAKEQEAtrqdHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:pfam01576  313 DTTAAQQEL----RSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   642 LSQKIGELHACIEASHQEQRQVQARVTELEAQL-KAEQQKTTEREKVVQEKAQLQEQLRALEE----SLKITK--GSLEE 714
Cdd:pfam01576  389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLsESERQRAELAEKLSKLQSELESVSSLLNEaegkNIKLSKdvSSLES 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   715 EKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLeeahQAETEALRHELAEATASQHRAE 794
Cdd:pfam01576  469 QLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTL----QAQLSDMKKKLEEDAGTLEALE 544

                          570       580
                   ....*....|....*....|...
gi 254675300   795 SECERLIREVESRQKRFEARQQE 817
Cdd:pfam01576  545 EGKKRLQRELEALTQQLEEKAAA 567
HpsJ_fam NF038305
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ...
 503-619 1.18e-05

HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.


Pssm-ID: 468465 [Multi-domain]  Cd Length: 230  Bit Score: 48.73  E-value: 1.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  503 GLNATLQQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGlRQQVEQLSSSLKLKEQQLEEAAKEQEaTRQDHAQQLAIV 582
Cdd:NF038305   98 HLNNTRRLSTQALQQINQQAGQQETQ-LQQQLNQLQAQTS-PQQLNQLLKSEQKQGQALASGQLPEE-QKEQLQQFKSNP 174

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 254675300  583 AEAREASLRERDTARQQLETVEKEkdAKLESLQQQLQ 619
Cdd:NF038305  175 QALDKFLAQQLTQIRTQAEEAEKQ--ARLEALKSSLR 209
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 577-954 4.47e-05

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 49.06  E-value: 4.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  577 QQLAIVAEAREASLRERDTARQQ-LETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGElhaciea 655
Cdd:NF012221 1503 KTLKLTAKAGSNRLEFKGTGHNDgLGYILDNVVATSESSQQADAVSKHAKQDDAAQNALADKERAEADRQRLE------- 1575

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  656 shQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGsleeekrraADALKEQQCRATEMEA 735
Cdd:NF012221 1576 --QEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEESRAVTKELTTLAQG---------LDALDSQATYAGESGD 1644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  736 ESRSLMEQR--EREQKELEQEKagrKGLEARIQQLEEAHQAETEALRHELAEATASQHRAesecERLIREVESRQKrfEA 813
Cdd:NF012221 1645 QWRNPFAGGllDRVQEQLDDAK---KISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQG----EQNQANAEQDID--DA 1715

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  814 RQQEEARYGAMFQEQLMALKGEKTGQEVQEEAveihseGQPGQQQSQLAQLHASLAKAiqqvqekevraqklvDDLSALQ 893
Cdd:NF012221 1716 KADAEKRKDDALAKQNEAQQAESDANAAANDA------QSRGEQDASAAENKANQAQA---------------DAKGAKQ 1774

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  894 EKMAATNKEVACLKTLVLKAGEQQETA--SLELLKEPPRAAN-RASDQLGEQQGRPFSSTHAAV 954
Cdd:NF012221 1775 DESDKPNRQGAAGSGLSGKAYSVEGVAepGSHINPDSPAAADgRFSEGLTEQEQEALEGATNAV 1838
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 850-1120 1.03e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 44.44  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  850 SEGQpgQQQSQLAQlHASLAKAIQQVQEKEVRA-----------QKLVDDLSALQEKMAATNKEVACLKTLVLKAG--EQ 916
Cdd:NF012221 1538 SESS--QQADAVSK-HAKQDDAAQNALADKERAeadrqrleqekQQQLAAISGSQSQLESTDQNALETNGQAQRDAilEE 1614

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  917 QETASLELLKEPPR-AANRASDQLGEQQGRPFSsTHAAVKAMEREAEQM-------GGELERLRAALIKSQGQQQEERGQ 988
Cdd:NF012221 1615 SRAVTKELTTLAQGlDALDSQATYAGESGDQWR-NPFAGGLLDRVQEQLddakkisGKQLADAKQRHVDNQQKVKDAVAK 1693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  989 QEREVARLTQERGQAQADLAQekaAKAELEMRLQNTLNEQRVefAALQEALAHALTEKegtdqelAKLRGQEAAQRTELK 1068
Cdd:NF012221 1694 SEAGVAQGEQNQANAEQDIDD---AKADAEKRKDDALAKQNE--AQQAESDANAAAND-------AQSRGEQDASAAENK 1761

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675300 1069 ELQQTLEQLKIQLVKKEKEHPAgGASGEDASGPGTQSETAGKTD-APGPELQA 1120
Cdd:NF012221 1762 ANQAQADAKGAKQDESDKPNRQ-GAAGSGLSGKAYSVEGVAEPGsHINPDSPA 1813
TOPEUc smart00435
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ...
 1595-1678 1.53e-03

DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras


Pssm-ID: 214661 [Multi-domain]  Cd Length: 391  Bit Score: 43.11  E-value: 1.53e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   1595 QMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQ 1674
Cdd:smart00435  278 SMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357


                    ....
gi 254675300   1675 QLRD 1678
Cdd:smart00435  358 QATD 361
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 1552-1740 2.07e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.17  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1552 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQaaehyKLQMEKAKThydakkqqnQKLQEQLQDLeeLQKENKELR 1631
Cdd:PRK06975  357 QRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDG-----KLADAQSAQ---------QALEQQYQDL--SRNRDDWMI 420

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1632 SEAERLgreLQQAGLKTkeaeqtcrHLTAQVRSLEAQVAHADQQLRDLGKFQVAT---------DALKSrepqvKPQLDL 1702
Cdd:PRK06975  421 AEVEQM---LSSASQQL--------QLTGNVQLALIALQNADARLATSDSPQAVAvrkaiaqdiERLKA-----APSADL 484

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300 1703 S------------IDSLDLSLEEGTPCSVASKLPRTQPDGTSVPGEPASP 1740
Cdd:PRK06975  485 TglaiklddaiakIDALPLSGEALPPHATMAAAPAAAAAAAAAAAAAGEP 534
 
Name Accession Description Interval E-value
HkD_NuMA cd22224
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also ...
 6-151 1.15e-49

Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles, and the alignment and segregation of chromosomes during mitotic cell division. The model corresponds to the N-terminal conserved globular Hook domain of NuMA, which folds as a variant of the helical calponin homology (CH) domain. It directly binds dynein light intermediate chains LIC1 and LIC2 through a conserved hydrophobic patch shared among other Hook adaptors.


Pssm-ID: 411795  Cd Length: 148  Bit Score: 173.53  E-value: 1.15e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300    6 TRAATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTIHDTKEGQQILQQPLPERLDFVCSFLQKNRKHPSSTQCLVSVQ 85
Cdd:cd22224     2 TKAEALLSWVNSLKLDDPIESISQLQDGTILLKIIYKLKGEEEEEQILDLSVEERLEFISSFLEGDCRFNSSQGTLVSWQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300   86 KVIEG--SEMELAKMIMLFLYQSTMSSRNlrDWEQFEYGVQAELAVILKFMLDHEESLNLTEDLESFL 151
Cdd:cd22224    82 KILQGenLELELAKVLLLLLYHSMMNNNL--TLEKLDYKTELELASILRFVLDNEDGLYLSEGLDKFL 147
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 554-1323 1.09e-27

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 122.86  E-value: 1.09e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   554 LKLKEQQlEEAAKEQEATRQDHAQQLAIVAEAREA--SL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:TIGR02168  168 SKYKERR-KETERKLERTRENLDRLEDILNELERQlkSLeRQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLkaeQQKTTEREKVVQEKAQLQEQLRALEESLKITKG 710
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEA 323

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   711 SLEEEKRRaadaLKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHqaetEALRHELAEATASQ 790
Cdd:TIGR02168  324 QLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   871 AIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASlELLKEPPRAANRASDQLGEQQGRPFSST 950
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVEN 554

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   951 -HAAVKAMEREAEQMGG-----ELERLRAALIKSQGQQQEERGQQEREVA-RLTQERGQAQADL---------------A 1008
Cdd:TIGR02168  555 lNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALsyllggvlvvddldnA 634

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1009 QEKAAKAELEMRLQnTLNEQRVE---FAALQEALAHALTekEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKE 1085
Cdd:TIGR02168  635 LELAKKLRPGYRIV-TLDGDLVRpggVITGGSAKTNSSI--LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1086 KEHPAGGASGEDASgpGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQG 1165
Cdd:TIGR02168  712 EELEQLRKELEELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:TIGR02168  790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1246 ELKRLVVAESEKSQKLEERLRLL--QVETASNSARAAE-RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELG 1322
Cdd:TIGR02168  870 ELESELEALLNERASLEEALALLrsELEELSEELRELEsKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949


                   .
gi 254675300  1323 Q 1323
Cdd:TIGR02168  950 S 950
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 515-1129 8.39e-27

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 119.66  E-value: 8.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  515 LASLKEQAKK-EQAQMLQTmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEqeatrqdhaqqlaivAEAREASLRER 593
Cdd:COG1196   202 LEPLERQAEKaERYRELKE-ELKELEAELLLLKLRELEAELEELEAELEELEAE---------------LEELEAELAEL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  594 DTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:COG1196   266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  674 LKAEQQkttEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQqcratemeAESRSLMEQREREQKELEQ 753
Cdd:COG1196   346 LEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEALLE 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  754 EKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygamfQEQLMALK 833
Cdd:COG1196   415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL-------AELLEELA 487

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  834 GEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDD-LSALQEKMAATNKEVACLKTLVLK 912
Cdd:COG1196   488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLK 567

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  913 AGEQQETASLELLKEPPRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQERE 992
Cdd:COG1196   568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  993 VARLTQERGQAQADLAQEKAAKaelemrlqntlNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQ 1072
Cdd:COG1196   648 EVTLEGEGGSAGGSLTGGSRRE-----------LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300 1073 TLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLE 1129
Cdd:COG1196   717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
NuMA_LGNBD cd22298
LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; ...
 1852-1910 4.55e-26

LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear matrix protein-22 (NMP-22), nuclear mitotic apparatus protein 1 (NUMA1), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of spindle poles and the alignment and segregation of chromosomes during mitotic cell division. It is involved in the establishment of mitotic spindle orientation during metaphase, and elongation during anaphase in a dynein-dynactin-dependent manner. NuMA, in complex with LGN, forms NuMA:LGN hetero-hexamers that promote spindle orientation. The model corresponds to the LGN binding domain (LGNBD) of NuMA. LGN (named for leu-gly-asn repeats) is also known as G protein signaling modulator 2.


Pssm-ID: 412093  Cd Length: 56  Bit Score: 102.68  E-value: 4.55e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1852 LLSLPGYRPTTRSSARRSQarmSSGAPQGRNSFYMGTCQDEPEQLDDWNRIAELQQRNR 1910
Cdd:cd22298     1 LLSLPGYRPSTRSSTRRSQ---SSSATGGRSTFYMGTCQDEPEHLDDWNRIAELQQRNR 56
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 412-965 2.21e-24

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 111.95  E-value: 2.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKlATDNTQLQTRVETLECE-RGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQ 490
Cdd:COG1196   201 QLEPLERQAEK-AERYRELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  491 GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSsLKLKEQQLEEAAKEQEA 570
Cdd:COG1196   280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEA 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  571 TRQDHAQQLAIVAEAREASLRERDTARQQLETVEK---EKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIG 647
Cdd:COG1196   359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRaaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  648 ELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALK--- 724
Cdd:COG1196   439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlag 518

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  725 ------------------EQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEA 786
Cdd:COG1196   519 lrglagavavligveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  787 TA-SQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLH 865
Cdd:COG1196   599 AAvDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  866 ASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGR 945
Cdd:COG1196   679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758

                         570       580
                  ....*....|....*....|..
gi 254675300  946 PFSSTHAA--VKAMEREAEQMG 965
Cdd:COG1196   759 PPDLEELEreLERLEREIEALG 780
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 330-870 1.63e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 109.26  E-value: 1.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  330 NHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGD 409
Cdd:COG1196   235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  410 ALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQA 489
Cdd:COG1196   315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  490 QgAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQE 569
Cdd:COG1196   395 A-AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  570 ATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQ---AANDARDNAQTSVTQAQQEKAELSQKI 646
Cdd:COG1196   474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavAVLIGVEAAYEAALEAALAAALQNIVV 553

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  647 GELHACIEASHQEQRQVQARVTEL--EAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALK 724
Cdd:COG1196   554 EDDEVAAAAIEYLKAAKAGRATFLplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  725 EQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQhRAESECERLIREV 804
Cdd:COG1196   634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-LAEEEEERELAEA 712

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300  805 ESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:COG1196   713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 478-1077 1.83e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.87  E-value: 1.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  478 QAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMlqtmQEQEQAAQGLRQQVEQLSSSLKLK 557
Cdd:COG1196   211 KAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELELEEA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  558 EQQLEEAAKEQEATRQD--HAQQLAIVAEAREASL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQ 634
Cdd:COG1196   287 QAEEYELLAELARLEQDiaRLEERRRELEERLEELeEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  635 AQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEE 714
Cdd:COG1196   367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  715 EKRRAADALKEqqcratemEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQAETEALRHELAEATASQHRAE 794
Cdd:COG1196   447 AAEEEAELEEE--------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL-LLEAEADYEGFLEGVKAALLLA 517

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  795 SECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALkgektgQEVQEEAVEIHSEGQPGQQQ-SQLAQLHASLAKAIQ 873
Cdd:COG1196   518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED------DEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAA 591

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  874 QVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEppRAANRASDQLGEQQGrpfSSTHAA 953
Cdd:COG1196   592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR--LREVTLEGEGGSAGG---SLTGGS 666

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  954 VKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFA 1033
Cdd:COG1196   667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....
gi 254675300 1034 ALQEALAHALTEKEgtdqelaklrgQEAAQRTELKELQQTLEQL 1077
Cdd:COG1196   747 LLEEEALEELPEPP-----------DLEELERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1117-1638 2.60e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.49  E-value: 2.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196   240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVA-ESEKSQKLEERLRLLQ--VETA 1273
Cdd:COG1196   320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaEEELEELAEELLEALRaaAELA 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1274 SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:COG1196   400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAEL--------------MRAQRELGELGSLRQKIVEQERAA 1419
Cdd:COG1196   480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaaYEAALEAALAAALQNIVVEDDEVA 559

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1420 QQ----LRAEKASYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQE 1493
Cdd:COG1196   560 AAaieyLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1494 AQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQT 1573
Cdd:COG1196   640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1574 QLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQnqklQEQLQDLEELQKENKELRSEAERLG 1638
Cdd:COG1196   720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEE----LPEPPDLEELERELERLEREIEALG 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 275-1070 7.40e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.06  E-value: 7.40e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   275 ELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKvrefanhLQQLQGAFNDLIEEHSKASQEWA 354
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------IEELQKELYALANEISRLEQQKQ 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   355 EKQARLENelstALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRV 434
Cdd:TIGR02168  306 ILRERLAN----LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   435 ETLECERGKQEAQLLAERSRFedekQQLASLIADLQSSVSNLSQAKEELEQasQAQGAQLTAQLTSMTGLNATLQQRDQE 514
Cdd:TIGR02168  382 ETLRSKVAQLELQIASLNNEI----ERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEE 455

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   515 LASLKEQAKKEQAQMlqtmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaiVAEAREASLRERD 594
Cdd:TIGR02168  456 LERLEEALEELREEL----EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA--------LLKNQSGLSGILG 523

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKA-------ELS----QKIGELHACIEASHQEQRQV 663
Cdd:TIGR02168  524 VLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNElgrvtflPLDsikgTEIQGNDREILKNIEGFLGV 603

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   664 QARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKI--------TKGSLEEEKRRAADALkeQQCRATEMEa 735
Cdd:TIGR02168  604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvtldgdlvRPGGVITGGSAKTNSS--ILERRREIE- 680

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   816 QEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEK 895
Cdd:TIGR02168  761 AEIEELEERLEEAEEELAEAEAEIEELEAQIE--------QLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   896 MAATNKEVACLKTLVLKAGEQQETASLEL--LKEPPRAANRASDQLGEQqgrpFSSTHAAVKAMEREAEQMGGELERLRa 973
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSEDIESLAAEIeeLEELIEELESELEALLNE----RASLEEALALLRSELEELSEELRELE- 907

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   974 aliksqgqqqeergqqeREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEalaHALTEKEGTDQEL 1053
Cdd:TIGR02168  908 -----------------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDE 967

                          810
                   ....*....|....*..
gi 254675300  1054 AKLRGQEAAQRTELKEL 1070
Cdd:TIGR02168  968 EEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 207-907 8.69e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.06  E-value: 8.69e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   207 LQTPQFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRI-DHLALLNEKQAASSQEPSELEELRGKNES 285
Cdd:TIGR02168  241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyALANEISRLEQQKQILRERLANLERQLEE 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   286 LTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAE---KQARLEN 362
Cdd:TIGR02168  321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQlelQIASLNN 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   363 ELSTALQDKKCLEEKNEILQGKLSQLEDQatrlqespaPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERG 442
Cdd:TIGR02168  401 EIERLEARLERLEDRRERLQQEIEELLKK---------LEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   443 KQEAQLLAERSRFEDEKQQLASL-----------------------IADLQSSVSNLSQAKEELEQA-SQAQGAQLTAQL 498
Cdd:TIGR02168  472 EAEQALDAAERELAQLQARLDSLerlqenlegfsegvkallknqsgLSGILGVLSELISVDEGYEAAiEAALGGRLQAVV 551

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   499 TSmtglnaTLQQRDQELASLKeQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQ 578
Cdd:TIGR02168  552 VE------NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   579 LAIVAEAREA-SLRERDTARQQLETVEKEKDAKLESLqqqlqaaNDARDNAQTSVTQAQQEKAELSQKIGELhacieash 657
Cdd:TIGR02168  625 VLVVDDLDNAlELAKKLRPGYRIVTLDGDLVRPGGVI-------TGGSAKTNSSILERRREIEELEEKIEEL-------- 689

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   658 qeqrqvQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAES 737
Cdd:TIGR02168  690 ------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   738 RSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETE---ALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   815 QQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEgQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQE 894
Cdd:TIGR02168  844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLN-ERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          730
                   ....*....|...
gi 254675300   895 KMAATNKEVACLK 907
Cdd:TIGR02168  923 KLAQLELRLEGLE 935
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 553-1324 1.08e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 106.68  E-value: 1.08e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   553 SLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSV 632
Cdd:TIGR02168  204 SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   633 TQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREK----VVQEKAQLQEQLRALEESLKIT 708
Cdd:TIGR02168  284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaeLEEKLEELKEELESLEAELEEL 363

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   709 KGSLEEEKRRAAD---ALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE-EAHQAETEALRHELA 784
Cdd:TIGR02168  364 EAELEELESRLEEleeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkKLEEAELKELQAELE 443

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   785 EATASQHRAESECERLIREVESRQKRFEARQQEEARygamFQEQLMALKGEKTGQEVQEEAVEIHSEG--QPGQQQSQLA 862
Cdd:TIGR02168  444 ELEEELEELQEELERLEEALEELREELEEAEQALDA----AERELAQLQARLDSLERLQENLEGFSEGvkALLKNQSGLS 519

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   863 QLHASLAKAIQQVQEKEV--------RAQKLVDDLSALQEKMAATNKEVACLKTLVL------------------KAGEQ 916
Cdd:TIGR02168  520 GILGVLSELISVDEGYEAaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFLpldsikgteiqgndreilKNIEG 599

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   917 QETASLELLKEPPRA-------------------ANRASDQL----------GEQQGRPFSSTHAAVKA----MEREAEQ 963
Cdd:TIGR02168  600 FLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLrpgyrivtldGDLVRPGGVITGGSAKTnssiLERRREI 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   964 mgGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRvefaALQEALAHAL 1043
Cdd:TIGR02168  680 --EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLS 753

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1044 TEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKiQLVKKEKEhpaggasgedasgpgtqsetagktdapgpELQALRA 1123
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKE-----------------------------ELKALRE 803

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1124 EISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEE 1203
Cdd:TIGR02168  804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1204 EWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELK----RLVVAESEKSQKLEERLRLLQVETASNSARA 1279
Cdd:TIGR02168  884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrleGLEVRIDNLQERLSEEYSLTLEEAEALENKI 963

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 254675300  1280 AERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQE 1324
Cdd:TIGR02168  964 EDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 213-903 2.15e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 102.44  E-value: 2.15e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHL-----ALLNEKQAASSQE---PSELEELRGKNE 284
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyALANEISRLEQQKqilRERLANLERQLE 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   285 SLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAE---KQARLE 361
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQlelQIASLN 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   362 NELSTALQDKKCLEEKNEILQGKLSQLEDQatrlqespaPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECER 441
Cdd:TIGR02168  400 NEIERLEARLERLEDRRERLQQEIEELLKK---------LEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   442 GKQEAQLLAERSRFEDEKQQLASL-----------------------IADLQSSVSNLSQAKEELEQA-SQAQGAQLTAQ 497
Cdd:TIGR02168  471 EEAEQALDAAERELAQLQARLDSLerlqenlegfsegvkallknqsgLSGILGVLSELISVDEGYEAAiEAALGGRLQAV 550

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   498 LtsMTGLNATLQ--------------------QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKL- 556
Cdd:TIGR02168  551 V--VENLNAAKKaiaflkqnelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVv 628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   557 ------KEQQLEEAAKEQEATRQDH--AQQLAIVAEAREASL------RERDTARQQLETVE---KEKDAKLESLQQQLQ 619
Cdd:TIGR02168  629 ddldnaLELAKKLRPGYRIVTLDGDlvRPGGVITGGSAKTNSsilerrREIEELEEKIEELEekiAELEKALAELRKELE 708

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   620 AANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTE-----------REKVV 688
Cdd:TIGR02168  709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaeaeaeIEELE 788

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   689 QEKAQLQEQLRALEESLKITKGSLEEEKRRAADA----------LKEQQCRATEMEAESRSLMEQREREQKELEQEKAGR 758
Cdd:TIGR02168  789 AQIEQLKEELKALREALDELRAELTLLNEEAANLrerleslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   759 KGLEARIQQLEE---AHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMAL--K 833
Cdd:TIGR02168  869 EELESELEALLNeraSLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseE 948

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   834 GEKTGQEVQEEAVEIhsEGQPGQQQSQLAQLHASLAK-------AIQQVQEKEVR-----AQK--LVDDLSALQEKMAAT 899
Cdd:TIGR02168  949 YSLTLEEAEALENKI--EDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERydfltAQKedLTEAKETLEEAIEEI 1026


                   ....
gi 254675300   900 NKEV 903
Cdd:TIGR02168 1027 DREA 1030
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1117-1622 5.38e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.78  E-value: 5.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196   254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNS 1276
Cdd:COG1196   334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1277 ARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:COG1196   414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1357 LPAKHLcqQLQAEQAAAEKRFREELEQSKQAAGGLQAEL-----MRAQRELGELGSLRQKIVEQERAAQQ----LRAEKA 1427
Cdd:COG1196   494 LLLLEA--EADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaaYEAALEAALAAALQNIVVEDDEVAAAaieyLKAAKA 571

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1428 SYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDqAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMT 1505
Cdd:COG1196   572 GRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREAD-ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1506 ----------AKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQL 1575
Cdd:COG1196   651 legeggsaggSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1576 NELQAQLSQKEQAAEHYKLQMEKAKTH--------------------------------YDAKKQQNQKLQEQLQDLEE 1622
Cdd:COG1196   731 EAEREELLEELLEEEELLEEEALEELPeppdleelerelerlereiealgpvnllaieeYEELEERYDFLSEQREDLEE 809
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 856-1626 8.53e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 100.52  E-value: 8.53e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   856 QQQSQLAQLHASLakaiqQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLvLKAGEQQETASLELLKEPPRAANRA 935
Cdd:TIGR02168  206 ERQAEKAERYKEL-----KAELRELELALLVLRLEELREELEELQEELKEAEEE-LEELTAELQELEEKLEELRLEVSEL 279

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   936 SDQLGEQQGRPFSSThAAVKAMEREAEQMGGELERLRAaliksqgqqqeERGQQEREVARLTQERGQAQADLAQEKAAKA 1015
Cdd:TIGR02168  280 EEEIEELQKELYALA-NEISRLEQQKQILRERLANLER-----------QLEELEAQLEELESKLDELAEELAELEEKLE 347

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1016 ELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQ---ELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGG 1092
Cdd:TIGR02168  348 ELKEELESLEAELEELEAELEELESRLEELEEQLETlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1093 ASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDkALETLQGQLEEKAR 1172
Cdd:TIGR02168  428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD-SLERLQENLEGFSE 506

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1173 ELghnqAASASAQRELQALRAKAQDHSKAEEEWKA------------------QVARGQQEAERKSSLI-SSLEEEVSIL 1233
Cdd:TIGR02168  507 GV----KALLKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvvenlNAAKKAIAFLKQNELGrVTFLPLDSIK 582

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1234 NRQVLEKEGESKELKRLVVAESEKSQKLEERLRLL------QVETASNSARAAERSSALREE---VQSLREEVEKQRVVS 1304
Cdd:TIGR02168  583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDNALELAKKLRPGyriVTLDGDLVRPGGVIT 662

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1305 ENSRQELASQAERA---EELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREEL 1381
Cdd:TIGR02168  663 GGSAKTNSSILERRreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1382 EQSKQAAGGLQAELMRAQRE----LGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLG 1457
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEieelEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1458 RQFLEVELDQAR--EKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAkvkvLEERQRFQEERQKLTAQVEE 1535
Cdd:TIGR02168  823 RERLESLERRIAatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL----LNERASLEEALALLRSELEE 898

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1536 LSKKLTEHDqaskvqqQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ-KEQAAEHYKLQMEKAKTHYDAKKQQNQKLQ 1614
Cdd:TIGR02168  899 LSEELRELE-------SKRSELRRELEELREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

                          810
                   ....*....|..
gi 254675300  1615 EQLQDLEELQKE 1626
Cdd:TIGR02168  972 RRLKRLENKIKE 983
PTZ00121 PTZ00121
MAEBL; Provisional
 265-937 1.23e-20

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 100.22  E-value: 1.23e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  265 KQAASSQEPSELEELRGKNESLTV----RLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAfn 340
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAeavkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA-- 1280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  341 dliEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKlSQLEDQATRLQEspAPEKGEVLGDALQLDTLKQEA 420
Cdd:PTZ00121 1281 ---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK-KKAEEAKKKADA--AKKKAEEAKKAAEAAKAEAEA 1354

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  421 AKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTS 500
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  501 MTGLNATLQQRDQELASLKEQAKKeqAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLA 580
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  581 ivAEAREAS-LRERDTARQQLETVEKEKDAKLESLQQ--QLQAANDARDNAQtsVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:PTZ00121 1513 --DEAKKAEeAKKADEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEE--KKKAEEAKKAEEDKNMALRKAEEAKK 1588

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQA--RVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEA 735
Cdd:PTZ00121 1589 AEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAE 1665

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  816 QEEARYGAMFQEQLMALKG--EKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKA---IQQVQEKEVRAQKLVDDls 890
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKeeEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIfdnFANIIEGGKEGNLVIND-- 1823

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*..
gi 254675300  891 aLQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASD 937
Cdd:PTZ00121 1824 -SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD 1869
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 665-1639 1.42e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 99.75  E-value: 1.42e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   665 ARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:TIGR02168  189 DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTAELQEL 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   745 EREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAM 824
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   825 FQEqlmaLKGEKTGQEvqeeaveihsegqpgqqqSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVA 904
Cdd:TIGR02168  346 LEE----LKEELESLE------------------AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   905 CLKTLVLKAGEQQEtaslellkeppRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKsqgqqqe 984
Cdd:TIGR02168  404 RLEARLERLEDRRE-----------RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE------- 465

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   985 ergqQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEAlaHALTEKEGTDQELAKLR-GQEAAQ 1063
Cdd:TIGR02168  466 ----LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ--SGLSGILGVLSELISVDeGYEAAI 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1064 RTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTqsetagktDAPGPELQALRAEISKleqqcqqqqqQVEGLT 1143
Cdd:TIGR02168  540 EAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLD--------SIKGTEIQGNDREILK----------NIEGFL 601

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1144 HSLKSERACRAEQDKALETLQGQLeekarelgHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSli 1223
Cdd:TIGR02168  602 GVAKDLVKFDPKLRKALSYLLGGV--------LVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSS-- 671

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1224 ssleeevsILNRQvlekegesKELKRLvvaeSEKSQKLEERLRLLQVETAsnsaraaerssALREEVQSLREEVEKQRVV 1303
Cdd:TIGR02168  672 --------ILERR--------REIEEL----EEKIEELEEKIAELEKALA-----------ELRKELEELEEELEQLRKE 720

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1304 SENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQ 1383
Cdd:TIGR02168  721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1384 SKQAAGGLQAELMRaqrelgelgsLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEEnrglgeranlgrqflev 1463
Cdd:TIGR02168  801 LREALDELRAELTL----------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED----------------- 853

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1464 eldqarekyVQELAAVRTDAETHLAEMRQEAQStsrelevmtakyegakvkVLEERQRFQEERQKLTAQVEELSKKLTEH 1543
Cdd:TIGR02168  854 ---------IESLAAEIEELEELIEELESELEA------------------LLNERASLEEALALLRSELEELSEELREL 906

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1544 DQaskvqqqKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ-KEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLqdlee 1622
Cdd:TIGR02168  907 ES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRL----- 974

                          970
                   ....*....|....*..
gi 254675300  1623 lqkenKELRSEAERLGR 1639
Cdd:TIGR02168  975 -----KRLENKIKELGP 986
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 213-814 1.97e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.24  E-value: 1.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALlnekqaassqepsELEELRGKNESLTVRLHE 292
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELAR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  293 TLKQCQNLKTEKSQMDRKISQLSEENgdlsfkvrefanhlqqlqgafndlieehskasQEWAEKQARLENELSTALQDKK 372
Cdd:COG1196   300 LEQDIARLEERRRELEERLEELEEEL--------------------------------AELEEELEELEEELEELEEELE 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  373 CLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLEcergKQEAQLLAER 452
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEEL 423

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  453 SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT 532
Cdd:COG1196   424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  533 MQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLE 612
Cdd:COG1196   504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  613 SLQ-QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashqeqrqVQARVTELEAQLKAEQQKTTEREKVVQEK 691
Cdd:COG1196   584 ARAaLAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----------GRTLVAARLEAALRRAVTLAGRLREVTLE 652

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  692 AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:COG1196   653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 254675300  772 HQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:COG1196   733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1119-1681 8.41e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.93  E-value: 8.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1119 QALRAEISKLEqqcqqqqqqVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDH 1198
Cdd:COG1196   216 RELKEELKELE---------AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1199 SKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSAR 1278
Cdd:COG1196   287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1279 AAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP 1358
Cdd:COG1196   367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1359 AKHLCQQLQAEQAAAEKRFREELEQSKQAagglQAELMRAQRELGELGSlRQKIVEQERAAQQLRAEKASYAEQLSMLKK 1438
Cdd:COG1196   447 AAEEEAELEEEEEALLELLAELLEEAALL----EAALAELLEELAEAAA-RLLLLLEAEADYEGFLEGVKAALLLAGLRG 521

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1439 AHGLLAEENRG-------LGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHL---AEMRQEAQSTSRELEVMTAKY 1508
Cdd:COG1196   522 LAGAVAVLIGVeaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldKIRARAALAAALARGAIGAAV 601

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1509 EGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQ-------QEVQRLQTQLNELQAQ 1581
Cdd:COG1196   602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAggsltggSRRELLAALLEAEAEL 681

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1582 LSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQ 1661
Cdd:COG1196   682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761

                         570       580
                  ....*....|....*....|
gi 254675300 1662 VRSLEAQVAHADQQLRDLGK 1681
Cdd:COG1196   762 LEELERELERLEREIEALGP 781
PTZ00121 PTZ00121
MAEBL; Provisional
 653-1432 1.62e-19

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 96.36  E-value: 1.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  653 IEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEE------KRRAADALKEQ 726
Cdd:PTZ00121 1052 IDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEArkaeeaKKKAEDARKAE 1131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  727 QCRATEmeaESRSLMEQREREqkELEQEKAGRKGLEARiqQLEEAHQAEtEALRHELAEATASQHRAESecerlIREVES 806
Cdd:PTZ00121 1132 EARKAE---DARKAEEARKAE--DAKRVEIARKAEDAR--KAEEARKAE-DAKKAEAARKAEEVRKAEE-----LRKAED 1198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  807 RQKRFEARQQEEARYGAMFQEQLMALKGE--KTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEavKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  885 LVDDLSALQEKMAATNKEvaclktlvlKAGEQQETASLELLKEPPRAANRASDQLGEQQGRpfssthaaVKAMEREAEQM 964
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAK---------KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------ADAAKKKAEEA 1341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  965 GGELERLRAAliKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAkaelEMRLQNTLNEQRVEFAALQEALAHALT 1044
Cdd:PTZ00121 1342 KKAAEAAKAE--AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE----EKKKADEAKKKAEEDKKKADELKKAAA 1415

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1045 EKEGTDQelAKLRGQEAAQRTELKelQQTLEQLKIQLVKKEKEHpagGASGEDASGPGTQSETAGKTDAPGPELQALRAE 1124
Cdd:PTZ00121 1416 AKKKADE--AKKKAEEKKKADEAK--KKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1125 ISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARElghnQAASASAQRELQALRaKAQDHSKAEEE 1204
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD----EAKKAEEKKKADELK-KAEELKKAEEK 1563

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1205 WKAQVARgqQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQklEERLRLLQVETASNSARAAERSS 1284
Cdd:PTZ00121 1564 KKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE--EAKIKAEELKKAEEEKKKVEQLK 1639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1285 ALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQAL----VSELLPAK 1360
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELkkkeAEEKKKAE 1719

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1361 HLCQQLQAEQAAAEKRFREELEQSKQAAgglqaelmRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQ 1432
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAE--------EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
PTZ00121 PTZ00121
MAEBL; Provisional
 959-1652 6.23e-19

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 94.44  E-value: 6.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  959 REAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTlneQRVEFAALQEA 1038
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA---RKAEDAKKAEA 1180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1039 LAHALTEKEGTDQELAK-LRGQEAAQRTE----LKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDA 1113
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEdARKAEAARKAEeerkAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1114 PGPELQALRAEISKLEQQCQQQQQQVEgltHSLKSERACRAEQDKALETLQGQLEEKaRELGHNQAASASAQRELQALRA 1193
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELKKAE---EKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKK 1336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1194 KAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRlvvAESEKSQKLEERLRLLQVETA 1273
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK---ADEAKKKAEEDKKKADELKKA 1413

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1274 SNSARAAERSSALREEVQSLREEVEKQrvvsensrqELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKA---------EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRElgelgslRQKIVEQERAAQQLRAEKASYAEQL 1433
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-------AKKADEAKKAEEKKKADELKKAEEL 1557

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1434 SmlKKAHGLLAEENRGLGERANLGRQFLEvELDQAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKV 1513
Cdd:PTZ00121 1558 K--KAEEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1514 KVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQqevqrlqtqlnelqaqlsqKEQAAEHYK 1593
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED-------------------EKKAAEALK 1695

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1594 LQMEKAKTHYDAKKqqnqKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAE 1652
Cdd:PTZ00121 1696 KEAEEAKKAEELKK----KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 519-1315 2.83e-18

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 92.05  E-value: 2.83e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQ 598
Cdd:TIGR02169  172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE 251

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   599 QLETVEKEKDAK---LESLQQQLQAANdARDNAQTSVTQA--QQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:TIGR02169  252 ELEKLTEEISELekrLEEIEQLLEELN-KKIKDLGEEEQLrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   674 LKAEQQKTTEREKVVQE----KAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEA----------ESRS 739
Cdd:TIGR02169  331 IDKLLAEIEELEREIEEerkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlkreinelkrELDR 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   740 LMEQREREQKELEQEKAGRKGLEARIQQLE---EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQ 816
Cdd:TIGR02169  411 LQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   817 EEARYGAmfqeQLMALKGEKTGQEVQEEAVEIHSEGQPGqQQSQLAQLHASLAKAIQQVQEKevRAQKLVDDLSALQEKM 896
Cdd:TIGR02169  491 ELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHG-TVAQLGSVGERYATAIEVAAGN--RLNNVVVEDDAVAKEA 563

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   897 AATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLG-EQQGRP-----FSSThAAVKAMEREAEQMGG-ELE 969
Cdd:TIGR02169  564 IELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEfDPKYEPafkyvFGDT-LVVEDIEAARRLMGKyRMV 642

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   970 RLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEmRLQNTLNEQRVEFAALQEALAHALTEKEGT 1049
Cdd:TIGR02169  643 TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELS-SLQSELRRIENRLDELSQELSDASRKIGEI 721

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1050 DQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgtQSETAGKTDAPGPELQALRAEISKLE 1129
Cdd:TIGR02169  722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE----------------LKELEARIEELEEDLHKLEEALNDLE 785

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1130 qqCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQV 1209
Cdd:TIGR02169  786 --ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1210 ARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREE 1289
Cdd:TIGR02169  864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943

                          810       820
                   ....*....|....*....|....*.
gi 254675300  1290 VQSLREEVEKQRVVSENSRQELASQA 1315
Cdd:TIGR02169  944 EEIPEEELSLEDVQAELQRVEEEIRA 969
PTZ00121 PTZ00121
MAEBL; Provisional
 562-1324 2.98e-18

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 92.51  E-value: 2.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  562 EEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARqqLETVEKEKDAKleSLQQQLQAANDARDNAQTSVTQAQQ---- 637
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDAR--KAEEARKAEDAKRVEIARKAEDARKaeea 1169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  638 EKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  718 RAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEAR----IQQLEEAHQAETEALRHElaEATASQHRA 793
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKkaeeKKKADEAKKKAEEAKKAD--EAKKKAEEA 1327

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  794 ESECERLIREVESRQKRFEA-RQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAI 872
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  873 QQVQEKEVRAQKlvddlsalQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPFSSTHA 952
Cdd:PTZ00121 1408 DELKKAAAAKKK--------ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  953 AVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEF 1032
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1033 AALQEALAHALTEKEGTDQELAK---LRGQEAAQRTELKELQQTLEQLKIQLVKKEkehpaggasgEDASGPGTQSETAG 1109
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKA----------EEAKIKAEELKKAE 1629

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1110 KTDAPGPELQALRAEisklEQQCQQQQQQVEGLTHSLKSERACRAEQDKaletlqgqleEKARELghnQAASASAQRELQ 1189
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAE----EKKKAEELKKAEEENKIKAAEEAKKAEEDK----------KKAEEA---KKAEEDEKKAAE 1692

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1190 ALRAKAQDHSKAEeewkaQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEErlrLLQ 1269
Cdd:PTZ00121 1693 ALKKEAEEAKKAE-----ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKK 1764

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1270 VETASNSARAAERSSALREEVqslREEVEKQRVVSENSRQELASQAERAEELGQE 1324
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEEL---DEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1003-1681 3.15e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.04  E-value: 3.15e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1003 AQADLAQEKAAKAELEMRLqNTLNEQR---VEFAALQEALAHA-----LTEKEGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:TIGR02168  184 TRENLDRLEDILNELERQL-KSLERQAekaERYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAEL 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1075 EQLKIQLVKKEKEHPAGGASGEDASGpgtqsetagktdapgpELQALRAEISKLEQQCQQQQQQVEGLTHSLKseracra 1154
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQK----------------ELYALANEISRLEQQKQILRERLANLERQLE------- 319

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILN 1234
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1235 rqvlekegeskelKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQ 1314
Cdd:TIGR02168  400 -------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1315 AERAEELGQELKAWQEKFFQKEQ---ALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKrFREELEQSKQAAGG- 1390
Cdd:TIGR02168  467 REELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAAIEAALGg 545

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1391 -LQAELMR------------AQRELG-------------ELGSLRQKIVEQERAAQQLRAEKASYAEQLSM--------- 1435
Cdd:TIGR02168  546 rLQAVVVEnlnaakkaiaflKQNELGrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggv 625

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1436 -----LKKAHGLLAEENRGL-------------------GERANLGRQFLEVELDQAREKY-------------VQELAA 1478
Cdd:TIGR02168  626 lvvddLDNALELAKKLRPGYrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIeeleekiaelekaLAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1479 VRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKV---LEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLK 1555
Cdd:TIGR02168  706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVeqlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1556 AFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAE 1635
Cdd:TIGR02168  786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300  1636 RLGRELQ---QAGLKTKEAEQTCRH--------LTAQVRSLEAQVAHADQQLRDLGK 1681
Cdd:TIGR02168  866 ELIEELEselEALLNERASLEEALAllrseleeLSEELRELESKRSELRRELEELRE 922
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 211-844 3.62e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 88.58  E-value: 3.62e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALLNEKQAASSQEPS--------ELEELRGK 282
Cdd:TIGR02168  308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELEsrleeleeQLETLRSK 387

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   283 NESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANH------------LQQLQGAFNDLIEEHSKAS 350
Cdd:TIGR02168  388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeleeleeeLEELQEELERLEEALEELR 467

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   351 QEWAEKQARL---ENELSTALQDKKCLEEKNEILQG----------KLSQLEDQATRLQESPAPEKG------EVLGDAL 411
Cdd:TIGR02168  468 EELEEAEQALdaaERELAQLQARLDSLERLQENLEGfsegvkallkNQSGLSGILGVLSELISVDEGyeaaieAALGGRL 547

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   412 Q-------------LDTLKQEAAKLATD---NTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSN 475
Cdd:TIGR02168  548 QavvvenlnaakkaIAFLKQNELGRVTFlplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV 627

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   476 LSQAKEELEQASQAQGAQLTAQLT--------SMTG----LNATLQQRDQELASLKEQakkeQAQMLQTMQEQEQAAQGL 543
Cdd:TIGR02168  628 VDDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGgsakTNSSILERRREIEELEEK----IEELEEKIAELEKALAEL 703

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   544 RQQVEQLSSSLKLKEQQLEEAAKEQEATRQDhAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND 623
Cdd:TIGR02168  704 RKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   624 ARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQ-----------QKTTEREKVVQEKA 692
Cdd:TIGR02168  783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrledleeqieELSEDIESLAAEIE 862

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   693 QLQEQLRALE---ESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:TIGR02168  863 ELEELIEELEselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   770 EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRF--------EARQQEEARYGAMFQEQLMALKGEKTGQEV 841
Cdd:TIGR02168  943 ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022


                   ...
gi 254675300   842 QEE 844
Cdd:TIGR02168 1023 IEE 1025
PTZ00121 PTZ00121
MAEBL; Provisional
 343-1072 1.17e-16

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 87.12  E-value: 1.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  343 IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLedqATRLQESPAPEKGEVLGDALQLDTLKQEAAK 422
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI---ARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  423 LATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQlasliadlqSSVSNLSQAKEELEQASQAQGAQLTAQLTSMT 502
Cdd:PTZ00121 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA---------EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  503 GLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGL-RQQVEQLSSslKLKEQQLEEAAKEQEATRQDHAQQLAI 581
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEeKKKADEAKK--KAEEAKKADEAKKKAEEAKKKADAAKK 1336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  582 VAE----AREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQtsvtqaQQEKAELSQKIGELHAciEASH 657
Cdd:PTZ00121 1337 KAEeakkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE------EKKKADEAKKKAEEDK--KKAD 1408

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQARVTELEAQLKAEQ-QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAE 736
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  737 SRSLMEQREREQKELEQEKAGRKGLEAR----IQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFE 812
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKkaeeAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  813 ARQQEEARYGAMFQEQLMalkgeKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEA-----KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  893 QEKMAATN----KEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLG--EQQGRPFSSTHAAVKAMEREAEQMGG 966
Cdd:PTZ00121 1644 EEKKKAEElkkaEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKK 1723

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  967 ELE---------RLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVE------ 1031
Cdd:PTZ00121 1724 AEEenkikaeeaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDkkikdi 1803

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....*...
gi 254675300 1032 ---FAALQEA----LAHALTEKEGTDQELAKLRGQEAAQRTELKELQQ 1072
Cdd:PTZ00121 1804 fdnFANIIEGgkegNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEK 1851
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 954-1665 9.78e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 83.95  E-value: 9.78e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   954 VKAMEREAEQMGGELERLRAA---LIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQ---NTLNE 1027
Cdd:TIGR02168  255 LEELTAELQELEEKLEELRLEvseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEeleSKLDE 334

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1028 QRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgtqset 1107
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ-------------------- 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1108 agktdapgpeLQALRAEISKLEQQCQQQQQQVEGLTHSLKSERacRAEQDKALETLQGQLEEKARELGHNQAASASAQRE 1187
Cdd:TIGR02168  395 ----------IASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELERLEEA 462

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1188 LQALRAKAQDHSKAEEEWKAQVARGQQEAErksslissleeevsILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRL 1267
Cdd:TIGR02168  463 LEELREELEEAEQALDAAERELAQLQARLD--------------SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1268 LQVETASNSARAAerssALREEVQSLreevekqrVVSENSRQELASQAERAEELGQ----ELKAWQEKFFQKEQALSALQ 1343
Cdd:TIGR02168  529 ISVDEGYEAAIEA----ALGGRLQAV--------VVENLNAAKKAIAFLKQNELGRvtflPLDSIKGTEIQGNDREILKN 596

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1344 LEHTSTQALVSELLPAK-HLCQQLQAEQAAAEKRFREELEQSKQAAGG-----LQAELMR---------AQRELG----- 1403
Cdd:TIGR02168  597 IEGFLGVAKDLVKFDPKlRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivtLDGDLVRpggvitggsAKTNSSilerr 676

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1404 -ELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVEldqarEKYVQELAAVRTD 1482
Cdd:TIGR02168  677 rEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-----EAEVEQLEERIAQ 751

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1483 AETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVL---EERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQA 1559
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEeleAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1560 QRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQ-----------DLEELQKENK 1628
Cdd:TIGR02168  832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrseleelseELRELESKRS 911

                          730       740       750
                   ....*....|....*....|....*....|....*..
gi 254675300  1629 ELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSL 1665
Cdd:TIGR02168  912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 244-894 2.04e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 79.34  E-value: 2.04e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   244 EKDAQIAMMQQRIDHLAL-LNEKQAASSQEPSELEELrGKNESLTVR-----LHETLKQCQN----LKTEKSQMDRKISQ 313
Cdd:TIGR02169  248 SLEEELEKLTEEISELEKrLEEIEQLLEELNKKIKDL-GEEEQLRVKekigeLEAEIASLERsiaeKERELEDAEERLAK 326

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   314 LSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLEN---ELSTALQDKKCLEEKNEILQGKLSQLED 390
Cdd:TIGR02169  327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKR 406

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   391 QATRLQESPAPEKGEVLgdalqldTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQ 470
Cdd:TIGR02169  407 ELDRLQEELQRLSEELA-------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   471 SSVSNLSQAKEELEQASQAQGAQLTAQLTS-------------MTGLNATLQQRDQELASLKEQA--KKEQAQMLQTMQE 535
Cdd:TIGR02169  480 RVEKELSKLQRELAEAEAQARASEERVRGGraveevlkasiqgVHGTVAQLGSVGERYATAIEVAagNRLNNVVVEDDAV 559

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   536 QEQAAQGLR---------------QQVEQLSSSLKLK------------EQQLEEAAK---------EQEATRQDHAQQL 579
Cdd:TIGR02169  560 AKEAIELLKrrkagratflplnkmRDERRDLSILSEDgvigfavdlvefDPKYEPAFKyvfgdtlvvEDIEAARRLMGKY 639

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   580 --------------AIVAEAREASLRERDTARQQLEtvEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQK 645
Cdd:TIGR02169  640 rmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAE--LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK 717

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   646 IGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTT----EREKVVQEKAQLQEQLRALEESLKITKGSL--------E 713
Cdd:TIGR02169  718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvksELKELEARIEELEEDLHKLEEALNDLEARLshsripeiQ 797

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   714 EEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARI---QQLEEAHQAETEALRHELAEATASQ 790
Cdd:TIGR02169  798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIksiEKEIENLNGKKEELEEELEELEAAL 877

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEavEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02169  878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE--ELSEIEDPKGEDEEIPEEELSLED 955

                          730       740
                   ....*....|....*....|....*
gi 254675300   871 AIQQVQEKEVRAQKLVD-DLSALQE 894
Cdd:TIGR02169  956 VQAELQRVEEEIRALEPvNMLAIQE 980
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1051-1679 7.42e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 77.80  E-value: 7.42e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1051 QELAKLRGqEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasGEDASGPGTQSETAGKTDapgpELQALRAEISKLEQ 1130
Cdd:TIGR02169  198 QQLERLRR-EREKAERYQALLKEKREYEGYELLKEKE-------ALERQKEAIERQLASLEE----ELEKLTEEISELEK 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1131 QCQQQQQQVEGLTHSLKSERACRAEQDKA--------LETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAE 1202
Cdd:TIGR02169  266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEkigeleaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1203 EEWKAQVARGQQEaerksslISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAER 1282
Cdd:TIGR02169  346 EEERKRRDKLTEE-------YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1283 SSA---LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPA 1359
Cdd:TIGR02169  419 SEEladLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1360 KhlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQR------ELGELGSLRQKIVEQERAAQQ----LRAEKASY 1429
Cdd:TIGR02169  499 A----RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataiEVAAGNRLNNVVVEDDAVAKEaielLKRRKAGR 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1430 AEQLSMLKKAHGLLaeENRGLGERANLGRQFLEVELDQARE---KYVQELAAVRTDAETHLAEMRQEAQST--------- 1497
Cdd:TIGR02169  575 ATFLPLNKMRDERR--DLSILSEDGVIGFAVDLVEFDPKYEpafKYVFGDTLVVEDIEAARRLMGKYRMVTlegelfeks 652

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1498 ---------SRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEV 1568
Cdd:TIGR02169  653 gamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1569 QRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLE--ELQKENKELRSEAERLGRELQQAGL 1646
Cdd:TIGR02169  733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLEEEVSRIEA 812

                          650       660       670
                   ....*....|....*....|....*....|...
gi 254675300  1647 KTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:TIGR02169  813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 646-1545 8.94e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 77.42  E-value: 8.94e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   646 IGELHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKAQLqEQLRALEESLKITKGSLEEEKRRAADALKE 725
Cdd:TIGR02169  165 VAEFDRKKEKALEELEEVEENIERLDLIID---EKRQQLERLRREREKA-ERYQALLKEKREYEGYELLKEKEALERQKE 240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   726 Q-QCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREV 804
Cdd:TIGR02169  241 AiERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   805 ESRQKRFEARQQEearygamFQEQLMALKGEKTGQEVQEEAVeihsegqpgqqQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:TIGR02169  321 EERLAKLEAEIDK-------LLAEIEELEREIEEERKRRDKL-----------TEEYAELKEELEDLRAELEEVDKEFAE 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   885 LVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLkEPPRAANRASDQLGEQQgrpfssthAAVKAMEREAEQM 964
Cdd:TIGR02169  383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELE--------EEKEDKALEIKKQ 453

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   965 GGELERLRAALIKsqgqqqeergqQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRvEFAALQEALAHALT 1044
Cdd:TIGR02169  454 EWKLEQLAADLSK-----------YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR-GGRAVEEVLKASIQ 521

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1045 EKEGTDQELAKLRGQ-----EAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGAS------GEDASGPGTQSETAGKTDa 1113
Cdd:TIGR02169  522 GVHGTVAQLGSVGERyataiEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATflplnkMRDERRDLSILSEDGVIG- 600

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1114 pgpelqaLRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKA-LETLQGQLEEKARELGHNQAASASAQRELQALR 1192
Cdd:TIGR02169  601 -------FAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYrMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP 673

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1193 AKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:TIGR02169  674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1273 ASNSA---RAAERSSALREEVQSLREEVEKqrVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTST 1349
Cdd:TIGR02169  754 ENVKSelkELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1350 QALVSELLpakhlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGS-----------LRQKIVEQERA 1418
Cdd:TIGR02169  832 EKEIQELQ-------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESrlgdlkkerdeLEAQLRELERK 904

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1419 AQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDqarekyvqelaavrtdaETHLAEMRQEAQSTS 1498
Cdd:TIGR02169  905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-----------------LEDVQAELQRVEEEI 967

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|....*..
gi 254675300  1499 RELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQ 1545
Cdd:TIGR02169  968 RALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1043-1688 1.18e-13

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 77.03  E-value: 1.18e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1043 LTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDasgpgtqsETAGKTDAPGPELQALR 1122
Cdd:TIGR02169  229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD--------LGEEEQLRVKEKIGELE 300

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1123 AEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAE 1202
Cdd:TIGR02169  301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1203 EEWKAQVargqqeaerkssliSSLEEEVSILNRqvlekegESKELKRLVVAESEKSQKLEERLRLLQVETasnsARAAER 1282
Cdd:TIGR02169  381 AETRDEL--------------KDYREKLEKLKR-------EINELKRELDRLQEELQRLSEELADLNAAI----AGIEAK 435

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1283 SSALREEVQSLREEVEKQRvvsensrqelasqaERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKhl 1362
Cdd:TIGR02169  436 INELEEEKEDKALEIKKQE--------------WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-- 499

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1363 cqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQR------ELGELGSLRQKIVEQERAAQQ----LRAEKASYAEQ 1432
Cdd:TIGR02169  500 --RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataiEVAAGNRLNNVVVEDDAVAKEaielLKRRKAGRATF 577

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1433 LSMLKKAHGLLaeENRGLGERANLGRQFLEVELDQAREK----------YVQELAAVR---------------------- 1480
Cdd:TIGR02169  578 LPLNKMRDERR--DLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlVVEDIEAARrlmgkyrmvtlegelfeksgam 655

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1481 -------TDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKL---TAQVEELSKKLTEHDQASKVQ 1550
Cdd:TIGR02169  656 tggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELsdaSRKIGEIEKEIEQLEQEEEKL 735

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1551 QQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDakkqqNQKLQEQLQDLEELQKENKEL 1630
Cdd:TIGR02169  736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS-----HSRIPEIQAELSKLEEEVSRI 810

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  1631 RSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDA 1688
Cdd:TIGR02169  811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 335-1324 1.51e-13

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 76.65  E-value: 1.51e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   335 LQGAFNDLIEEHSKASQEWAEKQA---RLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPApekgevlgDAL 411
Cdd:TIGR02169  140 LQGDVTDFISMSPVERRKIIDEIAgvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE--------KAE 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   412 QLDTLKQEaaKLATDNTQLQTRVETLEcergKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:TIGR02169  212 RYQALLKE--KREYEGYELLKEKEALE----RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   492 AQLTAQLTSmtglnatlqqrdqELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSslklKEQQLEEAAKEQEAT 571
Cdd:TIGR02169  286 EEEQLRVKE-------------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK----LLAEIEELEREIEEE 348

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   572 RQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDA---KLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGE 648
Cdd:TIGR02169  349 RKRRDKLTEEYAELKE----ELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   649 LHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKAQLQEQLRALEESLKItkgsLEEEKRRAADALKEQQC 728
Cdd:TIGR02169  425 LNAAIAGIEAKINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEA 497

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   729 RATEMEAESRSlmeqREREQKELEQEKAGRKGLEARIQQLEEAHQAETE-ALRHELAEATASQHRAESECERLIREVESR 807
Cdd:TIGR02169  498 QARASEERVRG----GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvAAGNRLNNVVVEDDAVAKEAIELLKRRKAG 573

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   808 QKRFEARQQeearygaMFQEQLMALKGEKTGqeVQEEAVEihsegqpgqqqsqLAQLHASLAKAIQQVqekeVRAQKLVD 887
Cdd:TIGR02169  574 RATFLPLNK-------MRDERRDLSILSEDG--VIGFAVD-------------LVEFDPKYEPAFKYV----FGDTLVVE 627

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   888 DLSALQEKM-----------------AATNKEVACLKTLVLKAGEQQETASL-ELLKEPPRAANRASDQLGEQQGRPFSS 949
Cdd:TIGR02169  628 DIEAARRLMgkyrmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAELQRLrERLEGLKRELSSLQSELRRIENRLDEL 707

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   950 THAAvkameREAEQMGGELERlraaliksqgqqqeergqqerevarltqERGQAQADLAQEKAAKAELEMRLQntlneqr 1029
Cdd:TIGR02169  708 SQEL-----SDASRKIGEIEK----------------------------EIEQLEQEEEKLKERLEELEEDLS------- 747

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1030 vefaALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgTQSETAG 1109
Cdd:TIGR02169  748 ----SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS---------------KLEEEVS 808

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1110 KTDApgpELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQ 1189
Cdd:TIGR02169  809 RIEA---RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1190 ALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAE------SEKSQKLEE 1263
Cdd:TIGR02169  886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsledvQAELQRVEE 965

                          970       980       990      1000      1010      1020
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300  1264 RLRLLQvetaSNSARAAERSsalrEEVQSLREEVEKQRVVSENSRQELASQAERAEELGQE 1324
Cdd:TIGR02169  966 EIRALE----PVNMLAIQEY----EEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
243-750 3.78e-13

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 75.08  E-value: 3.78e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  243 TEKDAQIAMMQQRIDHlALLNEKQAASSQEPSELEEL----------RGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS 312
Cdd:PRK02224  190 DQLKAQIEEKEEKDLH-ERLNGLESELAELDEEIERYeeqreqaretRDEADEVLEEHEERREELETLEAEIEDLRETIA 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  313 QLSEENGDLSFKVREFANHLQQLQGAFNDL----------IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQ 382
Cdd:PRK02224  269 ETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  383 GKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQL 462
Cdd:PRK02224  349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  463 ASLIADLQSSVSNLSQAKEELEQA--------------------SQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQA 522
Cdd:PRK02224  429 AELEATLRTARERVEEAEALLEAGkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  523 K-----KEQAQMLQ--------TMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaiVAEAREAS 589
Cdd:PRK02224  509 DrierlEERREDLEeliaerreTIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE--------EVAELNSK 580

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  590 LRERDTARQQLETVEkEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACI-EASHQEQRQVQARVT 668
Cdd:PRK02224  581 LAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAE 659

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  669 ELEAQLKAE-QQKTTEREKVVQEKAQLQEQLRALEEsLKITKGSLeEEKRRAADALKEQQCRATEMEAESRSLMEQRERE 747
Cdd:PRK02224  660 EYLEQVEEKlDELREERDDLQAEIGAVENELEELEE-LRERREAL-ENRVEALEALYDEAEELESMYGDLRAELRQRNVE 737


                  ...
gi 254675300  748 QKE 750
Cdd:PRK02224  738 TLE 740
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
537-1230 3.83e-13

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 75.34  E-value: 3.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  537 EQAAQGLRQQVEQLSSSlklkEQQLEEAAKeqeatRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA-KLESLQ 615
Cdd:COG4913   224 FEAADALVEHFDDLERA----HEALEDARE-----QIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrRLELLE 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  616 QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQ 695
Cdd:COG4913   295 AELEELRAELARLEAELERLEARLDALREELDELEA------QIRGNGGDRLEQLEREIERLER---ELEERERRRARLE 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  696 EQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEeahqAE 775
Cdd:COG4913   366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP----AR 441

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  776 TEALRHELAEATASqhrAESE----CErLIrEVESRQKRFEA------RQQE-----EARYGAMFQEqlmALKGEKTGQE 840
Cdd:COG4913   442 LLALRDALAEALGL---DEAElpfvGE-LI-EVRPEEERWRGaiervlGGFAltllvPPEHYAAALR---WVNRLHLRGR 513

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  841 VQEEAVEIHSEGQPGQQ---QSQLAQLHASLAKAIQQVQEKEVRAQKL--VDDLSAL-QEKMAATnkeVACLKTLVLKAG 914
Cdd:COG4913   514 LVYERVRTGLPDPERPRldpDSLAGKLDFKPHPFRAWLEAELGRRFDYvcVDSPEELrRHPRAIT---RAGQVKGNGTRH 590

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  915 EQQetaslellkepPRAANRASDQLGeqqgrpfSSTHAAVKAMEREAEQMGGELERLRAALikSQGQQQEERGQQEREVA 994
Cdd:COG4913   591 EKD-----------DRRRIRSRYVLG-------FDNRAKLAALEAELAELEEELAEAEERL--EALEAELDALQERREAL 650

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  995 RLTQERGQAQADLAQEKAAKAELEMRLQNtLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:COG4913   651 QRLAEYSWDEIDVASAEREIAELEAELER-LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL 729

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1075 EQLKIQLvkkekehpaggasgedasgpgtQSETAGKTDAPGPELQALRAEisklEQQCQQQQQQVEGLTHSLKSERACRA 1154
Cdd:COG4913   730 DELQDRL----------------------EAAEDLARLELRALLEERFAA----ALGDAVERELRENLEERIDALRARLN 783

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300 1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHS--KAEEEWKAQVARgqQEAERKSSLISSLEEEV 1230
Cdd:COG4913   784 RAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGlpEYEERFKELLNE--NSIEFVADLLSKLRRAI 859
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 774-1638 1.32e-12

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 73.56  E-value: 1.32e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   774 AETEALRHELAEATASQHRAESecerLIREVESRQKRFEARQQEEARYgamfqeqlMALKGEKTGQEVQEEAVEIHS-EG 852
Cdd:TIGR02169  170 RKKEKALEELEEVEENIERLDL----IIDEKRQQLERLRREREKAERY--------QALLKEKREYEGYELLKEKEAlER 237

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   853 QPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEK-MAATNKEVACLKTLVLKAgeqqeTASLELLKEPPRA 931
Cdd:TIGR02169  238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGEL-----EAEIASLERSIAE 312

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   932 ANRASDQLGEQQGRPFSSTHAavkaMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEK 1011
Cdd:TIGR02169  313 KERELEDAEERLAKLEAEIDK----LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1012 AAKAELEMrLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQ-------QTLEQLKIQLVKK 1084
Cdd:TIGR02169  389 DYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqeWKLEQLAADLSKY 467

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1085 EKEHpaggasgedasgpgtqSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGlthslksERACRAEQDKALETLQ 1164
Cdd:TIGR02169  468 EQEL----------------YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG-------GRAVEEVLKASIQGVH 524

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1165 GQLEEKAR-ELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQ------QEAERKSSLISSLEEEVSI---LN 1234
Cdd:TIGR02169  525 GTVAQLGSvGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRatflplNKMRDERRDLSILSEDGVIgfaVD 604

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1235 RQVLEKEGESKEL----KRLVVAESEKSQKLEERLRLLQVET-----------ASNSARAAE-RSSALREEVQSLREEVE 1298
Cdd:TIGR02169  605 LVEFDPKYEPAFKyvfgDTLVVEDIEAARRLMGKYRMVTLEGelfeksgamtgGSRAPRGGIlFSRSEPAELQRLRERLE 684

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1299 KQRVVSENSRQELASQAERAEELGQELKAWQEKffqkeqaLSALQLEhtstqalvsellpakhlcqqlqaeqaaaekrfR 1378
Cdd:TIGR02169  685 GLKRELSSLQSELRRIENRLDELSQELSDASRK-------IGEIEKE--------------------------------I 725

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1379 EELEQSKQAAGGLQAELMRaqrelgELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAhgllaeenrglgeRANLGR 1458
Cdd:TIGR02169  726 EQLEQEEEKLKERLEELEE------DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA-------------LNDLEA 786

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1459 QFLEVELDQAREKYvQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQK---LTAQVEE 1535
Cdd:TIGR02169  787 RLSHSRIPEIQAEL-SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienLNGKKEE 865

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1536 LSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAK---THYDAKKQQNQK 1612
Cdd:TIGR02169  866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEeelSEIEDPKGEDEE 945

                          890       900
                   ....*....|....*....|....*.
gi 254675300  1613 LQEQLQDLEELQKENKELRSEAERLG 1638
Cdd:TIGR02169  946 IPEEELSLEDVQAELQRVEEEIRALE 971
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1235-1689 1.60e-12

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 73.41  E-value: 1.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1235 RQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQ-VETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELAS 1313
Cdd:COG4913   241 HEALEDAREQIELLEPIRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1314 QAERAEEL--------GQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqqlQAEQAAAEKRFREELEQSK 1385
Cdd:COG4913   321 LREELDELeaqirgngGDRLEQLEREIERLERELEERERRRARLEALLAAL----------GLPLPASAEEFAALRAEAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1386 QAAGGLQAELMRAQRELGELgslRQKIVEQERAAQQLRAEKAS-----------YAEQLSMLKKAHGLLAEENRGLGEra 1454
Cdd:COG4913   391 ALLEALEEELEALEEALAEA---EAALRDLRRELRELEAEIASlerrksniparLLALRDALAEALGLDEAELPFVGE-- 465

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1455 nlgrqFLEVELDQAR--------------------EKYVQELAAV-RTDAETHL------------AEMRQEAQSTSREL 1501
Cdd:COG4913   466 -----LIEVRPEEERwrgaiervlggfaltllvppEHYAAALRWVnRLHLRGRLvyervrtglpdpERPRLDPDSLAGKL 540

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1502 EVMTAKYEGAKVKVLEER---------QRFQEERQKLTA--QVEElSKKLTEHDQASKVQQQ---------KLKAFQAQR 1561
Cdd:COG4913   541 DFKPHPFRAWLEAELGRRfdyvcvdspEELRRHPRAITRagQVKG-NGTRHEKDDRRRIRSRyvlgfdnraKLAALEAEL 619

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1562 GESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQ--KLQEQLQDLEELQKENKELRSEAERLGR 1639
Cdd:COG4913   620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiaELEAELERLDASSDDLAALEEQLEELEA 699

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300 1640 ELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDAL 1689
Cdd:COG4913   700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 872-1677 1.63e-12

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 73.18  E-value: 1.63e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   872 IQQVQEKEVRAQKLVDDLSALQEKMAaTNKEVAcLKTLVLKAgEQQETASLELLKEppRAANRASDQLGEQQgrpFSSTH 951
Cdd:TIGR02169  179 LEEVEENIERLDLIIDEKRQQLERLR-REREKA-ERYQALLK-EKREYEGYELLKE--KEALERQKEAIERQ---LASLE 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   952 AAVKAMEREAEQMGGELERLRAALiksQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVE 1031
Cdd:TIGR02169  251 EELEKLTEEISELEKRLEEIEQLL---EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1032 FAALQEALAhaltEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASgedasgpgtQSETAGKT 1111
Cdd:TIGR02169  328 EAEIDKLLA----EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE---------LKDYREKL 394

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1112 DAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQAL 1191
Cdd:TIGR02169  395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1192 RAKAQDHSKAEEEWKAQVARG---QQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSqkLEERLRLL 1268
Cdd:TIGR02169  475 KEEYDRVEKELSKLQRELAEAeaqARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVA--AGNRLNNV 552

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1269 QVETASNSARAAE---RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL- 1344
Cdd:TIGR02169  553 VVEDDAVAKEAIEllkRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAa 632

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1345 -EHTSTQALVS---ELLPAKHLCQQLQAEQAAAEKRFREELEQSKQaaggLQAELMRAQRELGelgSLRQKIVEQERAAQ 1420
Cdd:TIGR02169  633 rRLMGKYRMVTlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQR----LRERLEGLKRELS---SLQSELRRIENRLD 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1421 QLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEvELDQAREKYVQELAAVRTDaethLAEMRQEAQSTSRE 1500
Cdd:TIGR02169  706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-SLEQEIENVKSELKELEAR----IEELEEDLHKLEEA 780

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1501 LEVMTAKYEGAKVKVLEERQRFQEE-RQKLTAQVEELskkltehdqaskvqQQKLKAFQAQRGESQQEVQRLQTQLNELQ 1579
Cdd:TIGR02169  781 LNDLEARLSHSRIPEIQAELSKLEEeVSRIEARLREI--------------EQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1580 AQLSQKEQAAEHYKLQMEKakthydaKKQQNQKLQEQLQDLEE----LQKENKELRSEAERLGRELQQAGLKTKEAEQTC 1655
Cdd:TIGR02169  847 EQIKSIEKEIENLNGKKEE-------LEEELEELEAALRDLESrlgdLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

                          810       820
                   ....*....|....*....|..
gi 254675300  1656 RHLTAQVRSLEAQVAHADQQLR 1677
Cdd:TIGR02169  920 SELKAKLEALEEELSEIEDPKG 941
HkD_SF cd22211
Hook domain-containing proteins superfamily; The Hook domain superfamily includes Hook adaptor ...
 8-136 2.35e-12

Hook domain-containing proteins superfamily; The Hook domain superfamily includes Hook adaptor proteins, Hook-related proteins and nuclear mitotic apparatus protein (NuMA). They share an N-terminal conserved globular Hook domain, which folds as a variant of the helical calponin homology (CH) domain with an extended alpha-helix. The Hook domain is responsible for the binding of microtubule. The Hook family includes microtubule-binding proteins, Hook1-3. Hook1 is required for spermatid differentiation. Hook2 contributes to the establishment and maintenance of centrosome function. Hook3 is an adaptor protein for microtubule-dependent intracellular vesicle and protein trafficking, and is involved in Golgi and endosome transport. Hook proteins are components of the FTS/Hook/FHIP complex (FHF complex), which may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting (HOPS) complex. The Hook-related protein (HkRP) family includes Daple, Girdin and Gipie. Daple, also called Dvl-associating protein with a high frequency of leucine residues, or coiled-coil domain-containing protein 88C(CCDC88C), or Hook-related protein 2 (HkRP2), is a novel non-receptor nucleotide exchange factor (GEF) required for activation of guanine nucleotide-binding proteins (G-proteins) during non-canonical Wnt signaling. Girdin, also called Akt phosphorylation enhancer (APE), or coiled-coil domain-containing protein 88A (CCDC88A), or G alpha-interacting vesicle-associated protein (GIV), or Girders of actin filament, or Hook-related protein 1 (HkRP1), is a bifunctional modulator of guanine nucleotide-binding proteins (G proteins). Gipie, also called GRP78-interacting protein induced by ER stress, or coiled-coil domain-containing protein 88B(CCDC88B), or brain leucine zipper domain-containing protein, or Hook-related protein 3 (HkRP3), is a novel actin cytoskeleton-binding protein and Akt substrate that regulates cell migratory responses in various biological contexts. NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles and the alignment and the segregation of chromosomes during mitotic cell division.


Pssm-ID: 411792  Cd Length: 145  Bit Score: 66.53  E-value: 2.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300    8 AATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTI---HDTKEGQQILQQPLP-----ERLDFVCSFLQKNRKH----P 75
Cdd:cd22211     1 EAALLAWINTFPLSSPVESLDDLSDGVVLAEILSQIdpsYFDSEWLESRDSSDNwvlklNNLKKLYRSLSKYYREvlgqQ 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300   76 SSTQCLVSVQKV-IEGSEMELAKMIMLFLYQSTMSSRNLRD---WEQFEYGVQAELAVILKFMLD 136
Cdd:cd22211    81 LSDLPLPDLSAIaRDGDEEEIVKLLELVLGAAVQCENKEEYiarIQQLDESTQAELMLIIQEVLE 145
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 512-1339 4.40e-12

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 71.93  E-value: 4.40e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   512 DQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQlAIVAEAREASLR 591
Cdd:pfam02463  159 EEEAAGSRLKRKKKEAL-KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-YLLYLDYLKLNE 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   592 ERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacIEASHQEQRQVQARVTELE 671
Cdd:pfam02463  237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE---EEELKSELLKLERRKVDDE 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   672 AQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKEL 751
Cdd:pfam02463  314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   752 EQEKAGRKGLEARIQqlEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMA 831
Cdd:pfam02463  394 EEELELKSEEEKEAQ--LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   832 LKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEK-----------------EVRAQKLVDDLSALQE 894
Cdd:pfam02463  472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDgvggriisahgrlgdlgVAVENYKVAISTAVIV 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   895 KMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPF--SSTHAAVKAMEREAEQMGGELERLR 972
Cdd:pfam02463  552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNlaQLDKATLEADEDDKRAKVVEGILKD 631

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   973 AALIKSQGQQQEERGQQEREVARL-----TQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKE 1047
Cdd:pfam02463  632 TELTKLKESAKAKESGLRKGVSLEeglaeKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1048 GTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpagGASGEDASGPGTQSETAGKTDAPGPELQALRAEISK 1127
Cdd:pfam02463  712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE----EEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1128 LEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKA 1207
Cdd:pfam02463  788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1208 QVARG------QQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAE 1281
Cdd:pfam02463  868 LLQELllkeeeLEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  1282 RSSA------LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQAL 1339
Cdd:pfam02463  948 KEKEennkeeEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAI 1011
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1176-1708 8.46e-12

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 70.71  E-value: 8.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1176 HNQAASASAQRE-LQALRAKAQDHSKAEEEwkaqvaRGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAE 1254
Cdd:COG4913   241 HEALEDAREQIElLEPIRELAERYAAARER------LAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1255 SEKSQKLEERLRLLQVETASNSARAAERssaLREEVQSLREEVEKQRVVSEN--------------SRQELASQ----AE 1316
Cdd:COG4913   315 EARLDALREELDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARleallaalglplpaSAEEFAALraeaAA 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1317 RAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL------LPAKHLcqqlqaeqaaaekRFREELEqskQAAGG 1390
Cdd:COG4913   392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLerrksnIPARLL-------------ALRDALA---EALGL 455

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1391 LQAEL--------MRAQREL------GELGSLRQKI-VEQERAAQQLRaekasYAEQLSMLKKAHGLLAEENRGLGERAN 1455
Cdd:COG4913   456 DEAELpfvgelieVRPEEERwrgaieRVLGGFALTLlVPPEHYAAALR-----WVNRLHLRGRLVYERVRTGLPDPERPR 530

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1456 LGRQFL----EVELDQAREkYVQELAAVRTDAE--THLAEMRQEAQ--------STSRELEVMTAKYEGAKVKVL----- 1516
Cdd:COG4913   531 LDPDSLagklDFKPHPFRA-WLEAELGRRFDYVcvDSPEELRRHPRaitragqvKGNGTRHEKDDRRRIRSRYVLgfdnr 609

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1517 EERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQ--AQRGESQQEVQRLQTQLNELQAQ----------LSQ 1584
Cdd:COG4913   610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAElerldassddLAA 689

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1585 KEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVR- 1663
Cdd:COG4913   690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRe 769

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*.
gi 254675300 1664 SLEAQVAHADQQLRDL-GKFQVATDALKSREPQVKPQLDLSIDSLD 1708
Cdd:COG4913   770 NLEERIDALRARLNRAeEELERAMRAFNREWPAETADLDADLESLP 815
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 450-648 8.99e-12

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 71.02  E-value: 8.99e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  450 AERSRFEDEKQQLASLIADLQSSVSNLSQAKeeLEQASQAQGAQL-------TAQLTSMT-GLNAtLQQRDQELASLKEQ 521
Cdd:NF012221 1569 ADRQRLEQEKQQQLAAISGSQSQLESTDQNA--LETNGQAQRDAIleesravTKELTTLAqGLDA-LDSQATYAGESGDQ 1645

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  522 AKKEQAQ-MLQTMQEQ-EQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQ-----QLAIVAEAREASLRERD 594
Cdd:NF012221 1646 WRNPFAGgLLDRVQEQlDDAKKISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQGEQnqanaEQDIDDAKADAEKRKDD 1725

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 254675300  595 TARQQLETVEKEKDAKLESLQQQLQAANDARdNAQTSVTQAQQEKAELSQKIGE 648
Cdd:NF012221 1726 ALAKQNEAQQAESDANAAANDAQSRGEQDAS-AAENKANQAQADAKGAKQDESD 1778
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 381-960 9.08e-12

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 70.64  E-value: 9.08e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   381 LQGKLSQLEDQATRLQESpapeKGEVLGDALQLDTLKQEAA--------KLATDNTQLQTRVETLECERGKQEAQLLAER 452
Cdd:pfam12128  246 LQQEFNTLESAELRLSHL----HFGYKSDETLIASRQEERQetsaelnqLLRTLDDQWKEKRDELNGELSAADAAVAKDR 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   453 SRFED-EKQQLASLIADLQSSVSNLSQA---KEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQ 528
Cdd:pfam12128  322 SELEAlEDQHGAFLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAK 401

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   529 MLQTMQEQEQAAQG--------LRQQVEQLSSSLKLKEQQLEEAAKEqEATRQDHAQQLAIVAEAREASLRERDTARQQL 600
Cdd:pfam12128  402 IREARDRQLAVAEDdlqaleseLREQLEAGKLEFNEEEYRLKSRLGE-LKLRLNQATATPELLLQLENFDERIERAREEQ 480

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   601 EtvekEKDAKLESLQQQLQAANDARDNA-------QTSVTQAQQEKAELSQ----KIGELHACIEASHQEQRQVQARVTE 669
Cdd:pfam12128  481 E----AANAEVERLQSELRQARKRRDQAsealrqaSRRLEERQSALDELELqlfpQAGTLLHFLRKEAPDWEQSIGKVIS 556

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   670 LEAQLKAEQQKTTEREKVVQEKAQLQEQLRaLEESLKITKGSLEEEKRRAADALKE----QQCRATEMEAESRSLMEQRE 745
Cdd:pfam12128  557 PELLHRTDLDPEVWDGSVGGELNLYGVKLD-LKRIDVPEWAASEEELRERLDKAEEalqsAREKQAAAEEQLVQANGELE 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   746 REQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAM- 824
Cdd:pfam12128  636 KASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTe 715

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   825 FQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVA 904
Cdd:pfam12128  716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300   905 CLKTLvlkageQQETASLE--LLKEPPRAANRASDQLGEQQGRPFSSTHAAVKAMERE 960
Cdd:pfam12128  796 RYFDW------YQETWLQRrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEME 847
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 213-814 1.36e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 70.10  E-value: 1.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAllnekqaassqepSELEELRGKNESLTVRLHE 292
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL-------------AEIEELEREIEEERKRRDK 354

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   293 TLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSK---ASQEWAEKQARLENELSTALQ 369
Cdd:TIGR02169  355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeELQRLSEELADLNAAIAGIEA 434

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   370 DKKCLEEKNEILQGKLSQLEDQATRLQEspapekgevlgdalQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLL 449
Cdd:TIGR02169  435 KINELEEEKEDKALEIKKQEWKLEQLAA--------------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   450 AERSRFEDEKQQLASLIADLQS---SVSNLSQAKEELEQASQ-AQGAQLTA--------------QLTSMTGLNAT---- 507
Cdd:TIGR02169  501 ASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGERYATAIEvAAGNRLNNvvveddavakeaieLLKRRKAGRATflpl 580

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   508 --LQQRDQELASLKEQAKKEQAQMLQTMQEQEQAA--------------------------------------------- 540
Cdd:TIGR02169  581 nkMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsr 660

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   541 ---------QGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKL 611
Cdd:TIGR02169  661 aprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   612 ESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEA-----SHQEQRQVQ--------------ARVTELEA 672
Cdd:TIGR02169  740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQaelskleeevsrieARLREIEQ 819

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   673 QLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:TIGR02169  820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899

                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300   753 QEKAGRKGLEARIQQLEEaHQAETEALRHELAEATASQHRA------ESECERLIREVESRQKRFEAR 814
Cdd:TIGR02169  900 ELERKIEELEAQIEKKRK-RLSELKAKLEALEEELSEIEDPkgedeeIPEEELSLEDVQAELQRVEEE 966
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
324-803 1.82e-11

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 69.94  E-value: 1.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  324 KVREFANHLQQLQGAFNDLIEEHSKASQ-----------EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQA 392
Cdd:COG4913   246 DAREQIELLEPIRELAERYAAARERLAEleylraalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  393 TRLQESPAPEKGEVLGD-ALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQS 471
Cdd:COG4913   326 DELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  472 SVSNLSQAKEELEQASQaqgaQLTAQLTSMTGLNATLQQRDQEL-ASLKEQAKKEQAQM-----LQTMQEQEQAAQG--- 542
Cdd:COG4913   406 ALAEAEAALRDLRRELR----ELEAEIASLERRKSNIPARLLALrDALAEALGLDEAELpfvgeLIEVRPEEERWRGaie 481

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  543 --LRQQ-----------------VEQLSSSLKLKEQQLEEAAKEQEATRQDH---AQQLAI----VAEAREASLRER--- 593
Cdd:COG4913   482 rvLGGFaltllvppehyaaalrwVNRLHLRGRLVYERVRTGLPDPERPRLDPdslAGKLDFkphpFRAWLEAELGRRfdy 561

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  594 ---DTArQQLETVEK---------------EKD----------------AKLESLQQQLQAANDARDNAQTSVTQAQQEK 639
Cdd:COG4913   562 vcvDSP-EELRRHPRaitragqvkgngtrhEKDdrrrirsryvlgfdnrAKLAALEAELAELEEELAEAEERLEALEAEL 640

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  640 AELSQKIGELHACIEASHQEQ--RQVQARVTELEAQLKAE-------QQKTTEREKVVQEKAQLQEQLRALEEslkiTKG 710
Cdd:COG4913   641 DALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLdassddlAALEEQLEELEAELEELEEELDELKG----EIG 716

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  711 SLEEEKRRAADALKEQQCRATEMEAESRSLMEQRereqkeleqekagrkgLEARIQQL--EEAHQAETEALRHELAEATA 788
Cdd:COG4913   717 RLEKELEQAEEELDELQDRLEAAEDLARLELRAL----------------LEERFAAAlgDAVERELRENLEERIDALRA 780

                         570
                  ....*....|....*
gi 254675300  789 SQHRAESECERLIRE 803
Cdd:COG4913   781 RLNRAEEELERAMRA 795
PTZ00121 PTZ00121
MAEBL; Provisional
 1144-1653 5.83e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.24  E-value: 5.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1144 HSLKSERACRAEQDKALETLQGQLEEKARElgHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLI 1223
Cdd:PTZ00121 1056 HEGKAEAKAHVGQDEGLKPSYKDFDFDAKE--DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEA 1133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1224 SSLEEEVSIlnrqvlEKEGESKELKRLVVA-ESEKSQKLEERLRLLQVETASNSARAAERSSAlrEEVQSLRE--EVEKQ 1300
Cdd:PTZ00121 1134 RKAEDARKA------EEARKAEDAKRVEIArKAEDARKAEEARKAEDAKKAEAARKAEEVRKA--EELRKAEDarKAEAA 1205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1301 RVVSENSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcQQLQAEQAAAEKRFREE 1380
Cdd:PTZ00121 1206 RKAEEERKAEEARKAEDAKKA-EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF--ARRQAAIKAEEARKADE 1282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1381 LEQSKQAAgglQAELMRAQRELGELGSLRQKiVEQERAAQQLRAEKASYAEQLSMLKKAhgllAEENRGLGERAnlgrqf 1460
Cdd:PTZ00121 1283 LKKAEEKK---KADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKK----AEEAKKAAEAA------ 1348

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1461 leveldqarekyvqelaavrtdaethlaemRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKL--TAQVEELSK 1538
Cdd:PTZ00121 1349 ------------------------------KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAeeKKKADEAKK 1398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1539 KLTEHDQasKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQ 1618
Cdd:PTZ00121 1399 KAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476

                         490       500       510
                  ....*....|....*....|....*....|....*...
gi 254675300 1619 DLEELQKENKELRSEAERLGR---ELQQAGLKTKEAEQ 1653
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKkadEAKKAAEAKKKADE 1514
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 292-771 8.59e-11

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 67.35  E-value: 8.59e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   292 ETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENeLSTALQDK 371
Cdd:TIGR04523  135 ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN-LKKKIQKN 213

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   372 KCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKlatDNTQLQTRVETLE------CERGKQE 445
Cdd:TIGR04523  214 KSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK---IKKQLSEKQKELEqnnkkiKELEKQL 290

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   446 AQLLAERSRFEDEKQQ--LASLIADLQSSVSNLSQAKEELEQASQA------QGAQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:TIGR04523  291 NQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQNQISQNNKIisqlneQISQLKKELTNSESENSEKQRELEEKQN 370

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEARE--ASLRERDT 595
Cdd:TIGR04523  371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSeiKDLTNQDS 450

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   596 ArqqLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE--------------KAELSQKIGELHACIEASHQEQR 661
Cdd:TIGR04523  451 V---KELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKElkskekelkklneeKKELEEKVKDLTKKISSLKEKIE 527

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   662 QVQARVTELE---AQLKAEQQKTTEREKVVQEKAQLQEQLRALEEsLKITKGSLEEEKRRAADALKEQQCRATEMEAESR 738
Cdd:TIGR04523  528 KLESEKKEKEskiSDLEDELNKDDFELKKENLEKEIDEKNKEIEE-LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606

                          490       500       510
                   ....*....|....*....|....*....|...
gi 254675300   739 SLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:TIGR04523  607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSK 639
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
216-851 2.77e-10

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 65.86  E-value: 2.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  216 RLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAL----LNEKQAASSQEPSELEELRGKNESLTVRLH 291
Cdd:PRK03918  169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSelpeLREELEKLEKEVKELEELKEEIEELEKELE 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  292 ETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFaNHLQQLQGAFNDLIEEHSkasqEWAEKQARLENELSTALQDK 371
Cdd:PRK03918  249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYE----EYLDELREIEKRLSRLEEEI 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  372 KCLEEKNEILQGKLSQLEDQATRLQESpAPEKGEVLGDALQLDTLKQEAAKLatdnTQLQTRVETLECERGKQEAQLLAE 451
Cdd:PRK03918  324 NGIEERIKELEEKEERLEELKKKLKEL-EKRLEELEERHELYEEAKAKKEEL----ERLKKRLTGLTPEKLEKELEELEK 398

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  452 R-SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQ---AQGAQLTAQ-----LTSMTGLNATLQQRDQELASLKEQA 522
Cdd:PRK03918  399 AkEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERKL 478

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  523 KKEQAQmLQTMQEQEQAAQGLRQQVEQLSS-SLKLKEQQLEEAAKEqeatrqdhaqqlaivAEAREASLRERDTARQQLE 601
Cdd:PRK03918  479 RKELRE-LEKVLKKESELIKLKELAEQLKElEEKLKKYNLEELEKK---------------AEEYEKLKEKLIKLKGEIK 542

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  602 TVEKEKDaKLESLQQQLQAANDARDNaqtsvtqAQQEKAELSQKIGEL-HACIEashqeqrQVQARVTELEAQLKaeqqK 680
Cdd:PRK03918  543 SLKKELE-KLEELKKKLAELEKKLDE-------LEEELAELLKELEELgFESVE-------ELEERLKELEPFYN----E 603

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  681 TTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQcratemEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:PRK03918  604 YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE------ELEKKYSEEEYEELREEYLELSRELAG 677

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  761 LEARIQQLEEaHQAETEALRHELAEATASQHRAESECERLirevESRQKRFEARQQEEARYGAMFQEQLMalkgektgQE 840
Cdd:PRK03918  678 LRAELEELEK-RREEIKKTLEKLKEELEEREKAKKELEKL----EKALERVEELREKVKKYKALLKERAL--------SK 744

                         650
                  ....*....|.
gi 254675300  841 VQEEAVEIHSE 851
Cdd:PRK03918  745 VGEIASEIFEE 755
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 605-813 4.68e-10

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 64.01  E-value: 4.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  605 KEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTER 684
Cdd:COG4942    23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  685 ekvvqeKAQLQEQLRALEESLKITK--------------------GSLEEEKRRAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:COG4942   103 ------KEELAELLRALYRLGRQPPlalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAEL 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  745 EREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEA 813
Cdd:COG4942   177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
429-820 5.81e-10

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 64.40  E-value: 5.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  429 QLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQAsQAQGAQLTAQLTSMTGLNAtL 508
Cdd:COG4717    50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-EAELEELREELEKLEKLLQ-L 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  509 QQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREA 588
Cdd:COG4717   128 LPLYQELEALEAELAELPER-LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  589 SLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT-----------SVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:COG4717   207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLL 286

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQARVTELEAQLKAEQQKTTEREKVvqEKAQLQEQLRALEESLKITKGSLEEEKRRAADAlkeQQCRATEMEAES 737
Cdd:COG4717   287 ALLFLLLAREKASLGKEAEELQALPALEEL--EEEELEELLAALGLPPDLSPEELLELLDRIEEL---QELLREAEELEE 361

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  738 RSLMEQREREQKELEQEK--AGRKGLEARIQQLEEAHQAETE--ALRHELAE---------ATASQHRAESECERLIREV 804
Cdd:COG4717   362 ELQLEELEQEIAALLAEAgvEDEEELRAALEQAEEYQELKEEleELEEQLEEllgeleellEALDEEELEEELEELEEEL 441

                         410
                  ....*....|....*.
gi 254675300  805 ESRQKRFEARQQEEAR 820
Cdd:COG4717   442 EELEEELEELREELAE 457
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
458-1077 8.24e-10

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 64.17  E-value: 8.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  458 EKQQLASLIADLQSSVSNLSQAKEELEQASQaqgaqltaQLTSMTGLNATLQQRDQELASLKEQakkEQAQMLQTMQEQE 537
Cdd:COG4913   219 EEPDTFEAADALVEHFDDLERAHEALEDARE--------QIELLEPIRELAERYAAARERLAEL---EYLRAALRLWFAQ 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  538 QAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQqlaIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQ 617
Cdd:COG4913   288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDE---LEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  618 LQAANDARdnaqtsvTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQqktterekvvQEKAQLQEQ 697
Cdd:COG4913   365 EALLAALG-------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR----------RELRELEAE 427

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  698 LRALEESlkitKGSLEEEKRRAADALKEqQCRATEME----AEsrsLMEQREREQK------------------ELEQEK 755
Cdd:COG4913   428 IASLERR----KSNIPARLLALRDALAE-ALGLDEAElpfvGE---LIEVRPEEERwrgaiervlggfaltllvPPEHYA 499

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  756 AGRKGLEARiqQLEEAHQAEtealrhELAEATASQHRAESECERLIREVESRQKRFEA--RQQEEARYGAMFQEQLMALK 833
Cdd:COG4913   500 AALRWVNRL--HLRGRLVYE------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwlEAELGRRFDYVCVDSPEELR 571

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  834 GE-----KTGQEVQEEAVEIHSEGQPGQQQSQLAQlhaslaKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKT 908
Cdd:COG4913   572 RHpraitRAGQVKGNGTRHEKDDRRRIRSRYVLGF------DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE 645

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  909 LVLKAGEQQETASLELLKeppRAANRASDQLGEQQGRpFSSTHAAVKAMEREAEQMGGELERLRAALiksqgqqqeergq 988
Cdd:COG4913   646 RREALQRLAEYSWDEIDV---ASAEREIAELEAELER-LDASSDDLAALEEQLEELEAELEELEEEL------------- 708

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  989 qerevARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELK 1068
Cdd:COG4913   709 -----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLN 783


                  ....*....
gi 254675300 1069 ELQQTLEQL 1077
Cdd:COG4913   784 RAEEELERA 792
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 327-701 1.23e-09

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 63.82  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  327 EFANHLQQLQGAFNDLIEEHSKASqEW----------AEKQARLENELStALQDKkcLEEKNEILQGKLSQLEDQATRLQ 396
Cdd:COG3096   310 EMARELEELSARESDLEQDYQAAS-DHlnlvqtalrqQEKIERYQEDLE-ELTER--LEEQEEVVEEAAEQLAEAEARLE 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  397 ESPApekgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLE-CERGKQEAQLLAER-----SRFEDEKQQLASLIADLQ 470
Cdd:COG3096   386 AAEE----EVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEkARALCGLPDLTPENaedylAAFRAKEQQATEEVLELE 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  471 SSVSNLSQAKEELEQASQAqgaqltaqLTSMTGlnatlqqrdqelASLKEQAKKEQAQMLQTMQEQEQAAQglrqQVEQL 550
Cdd:COG3096   462 QKLSVADAARRQFEKAYEL--------VCKIAG------------EVERSQAWQTARELLRRYRSQQALAQ----RLQQL 517

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  551 ssslklkEQQLEEAakEQEATRQDHAQQLAivaEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:COG3096   518 -------RAQLAEL--EQRLRQQQNAERLL---EEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQ 585

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEA-------QLKAEQQKTTEREKVVQEKAQLQEQLRAL 701
Cdd:COG3096   586 QLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEvtaamqqLLEREREATVERDELAARKQALESQIERL 663
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 508-927 2.30e-09

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 62.89  E-value: 2.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   508 LQQRDQELASLKEQAKKEQAQMLQ-------------TMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEA---T 571
Cdd:pfam01576    7 MQAKEEELQKVKERQQKAESELKElekkhqqlceeknALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESrleE 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   572 RQDHAQQLAIVAEAR-------EASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQ 644
Cdd:pfam01576   87 EEERSQQLQNEKKKMqqhiqdlEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTS 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   645 KIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ----EKAQLQEQ---LRALEESLKITKGSLEEEKR 717
Cdd:pfam01576  167 NLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRklegESTDLQEQiaeLQAQIAELRAQLAKKEEELQ 246

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   718 RAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEahqaETEALRHELAE---ATASQH--- 791
Cdd:pfam01576  247 AALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGE----ELEALKTELEDtldTTAAQQelr 322

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   792 -RAESECERLIREVESRQKRFEARQQEEARYGAM----FQEQLMALKG-----EKTGQEVQEEAVEIHSEGQPGQQQSQl 861
Cdd:pfam01576  323 sKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaleeLTEQLEQAKRnkanlEKAKQALESENAELQAELRTLQQAKQ- 401

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300   862 aQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVlkagEQQETASLELLKE 927
Cdd:pfam01576  402 -DSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL----NEAEGKNIKLSKD 462
mukB PRK04863
chromosome partition protein MukB;
441-1356 2.65e-09

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 62.67  E-value: 2.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  441 RGKQEAQLLAERSRFEDEKQQLAS--LIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNAtLQQRDQELASL 518
Cdd:PRK04863  282 RVHLEEALELRRELYTSRRQLAAEqyRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEEL 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  519 KEQAKkEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLK---------LKEQQLEEAAKEQEATRQDHAQQLAIVAEAREAS 589
Cdd:PRK04863  361 EERLE-EQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaLDVQQTRAIQYQQAVQALERAKQLCGLPDLTADN 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  590 LRERdtaRQQLETVEKEKDAKLESLQQQL---QAANDARDNAQTSVTQA--QQEKAELSQKIGELhaciEASHQEQRQVQ 664
Cdd:PRK04863  440 AEDW---LEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIagEVSRSEAWDVAREL----LRRLREQRHLA 512

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  665 ARVTELEAQLKaeqqkttEREKVVQEKAQLQEQLRALEESLKITKGSLEEekrrAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:PRK04863  513 EQLQQLRMRLS-------ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDE----LEQLQEELEARLESLSESVSEARERR 581

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  745 EREQKELEQEKAGRKGLEARIQQLEEAHQA---------ETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:PRK04863  582 MALRQQLEQLQARIQRLAARAPAWLAAQDAlarlreqsgEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEI 661

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  816 QEEARYGAMFQEQLMALKGEKTGQEVQE--EAVEIHSEGqpgqqqsQLAQLHASLAKAIqqvqekevraqkLVDDLSALQ 893
Cdd:PRK04863  662 ERLSQPGGSEDPRLNALAERFGGVLLSEiyDDVSLEDAP-------YFSALYGPARHAI------------VVPDLSDAA 722

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  894 EKMAAtnkEVACLKTLVLKAGEQQETAS----LELLkeppraANRASDQLGEQQGRpfSSTHAAVKAMEREAEqmggelE 969
Cdd:PRK04863  723 EQLAG---LEDCPEDLYLIEGDPDSFDDsvfsVEEL------EKAVVVKIADRQWR--YSRFPEVPLFGRAAR------E 785

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  970 RLRAALiksqgqqqeergqqerevarltqergQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHAltekEGT 1049
Cdd:PRK04863  786 KRIEQL--------------------------RAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFE----ADP 835

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1050 DQELAKLRGQEAAQRTELKELQQTLEQLKIQLvKKEKEHPAGgasgedasgpgtqsetagktdapgpeLQALRAEISKLE 1129
Cdd:PRK04863  836 EAELRQLNRRRVELERALADHESQEQQQRSQL-EQAKEGLSA--------------------------LNRLLPRLNLLA 888

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1130 qqcqqqqqqVEGLTHSLkseRACRAEQDKAletlqgqlEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQV 1209
Cdd:PRK04863  889 ---------DETLADRV---EEIREQLDEA--------EEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQ 948

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1210 ARGQQEAERKSSLIS--------SLEEEVSILNRqvlEKEGESKELKRLVVAESEKSQkLEERLRLLQVETASNSARAAE 1281
Cdd:PRK04863  949 QTQRDAKQQAFALTEvvqrrahfSYEDAAEMLAK---NSDLNEKLRQRLEQAEQERTR-AREQLRQAQAQLAQYNQVLAS 1024

                         890       900       910       920       930       940       950
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300 1282 ---RSSALREEVQSLREEVEKQRVVSENSRQELAsqAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:PRK04863 1025 lksSYDAKRQMLQELKQELQDLGVPADSGAEERA--RARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL 1100
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 546-1345 3.32e-09

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 62.30  E-value: 3.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   546 QVEQLSSSLKLKEQQLEEAAKEqeatrqdhAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQqlqaANDAR 625
Cdd:pfam02463  143 KIEIIAMMKPERRLEIEEEAAG--------SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ----AKKAL 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   626 DNAQTSvtQAQQEKAELSQKIGELHACIEASHQEQRQVQARVtELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESL 705
Cdd:pfam02463  211 EYYQLK--EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ-EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEE 287

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   706 KITKGSLEEEKRRAADALKEQQCRATEMEAESrslmeqrEREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAE 785
Cdd:pfam02463  288 LKLLAKEEEELKSELLKLERRKVDDEEKLKES-------EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE 360

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   786 ATASQHRAESECERLIREVESRQKRFEARQQEearygamfQEQLMALKGEKtGQEVQEeaveihsegqpgqqQSQLAQLH 865
Cdd:pfam02463  361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKL--------KEEELELKSEE-EKEAQL--------------LLELARQL 417

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   866 ASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEpprAANRASDQLGEQQGR 945
Cdd:pfam02463  418 EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL---VKLQEQLELLLSRQK 494

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   946 PFSSTHAAVKAMEREA-EQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNT 1024
Cdd:pfam02463  495 LEERSQKESKARSGLKvLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1025 LNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQ 1104
Cdd:pfam02463  575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1105 SETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASA 1184
Cdd:pfam02463  655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1185 QRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEER 1264
Cdd:pfam02463  735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1265 LRLLQVETASNSARAAERSSALREEVQSLrEEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL 1344
Cdd:pfam02463  815 ELLEEEQLLIEQEEKIKEEELEELALELK-EEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893


                   .
gi 254675300  1345 E 1345
Cdd:pfam02463  894 K 894
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1375-1683 3.50e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.38  E-value: 3.50e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1375 KRFREELEQSKQAAGGLQAelMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEEnrglgera 1454
Cdd:TIGR02168  213 ERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------- 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1455 nlgrqflEVELDQAREKYVQELAAVRTDAEtHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVE 1534
Cdd:TIGR02168  283 -------IEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1535 ELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDA--KKQQNQK 1612
Cdd:TIGR02168  355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAE 434

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300  1613 LQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQ 1683
Cdd:TIGR02168  435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 509-816 4.96e-09

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 61.68  E-value: 4.96e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   509 QQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDH-AQQLAIVAEARE 587
Cdd:pfam17380  303 QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEiAMEISRMRELER 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   588 ASL---RERDTARQQLETVEKEKdakLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQ 664
Cdd:pfam17380  383 LQMerqQKNERVRQELEAARKVK---ILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQ 459

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   665 ARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRaleeslKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:pfam17380  460 QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRR------KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300   745 EREqkELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEatasqhrAESECERLIREVESRQKRFEARQQ 816
Cdd:pfam17380  534 RRR--EAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME-------REREMMRQIVESEKARAEYEATTP 596
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 332-809 5.35e-09

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 61.67  E-value: 5.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   332 LQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEK----NEILQGKLSQLEDQATRLQES--------- 398
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarnqNSMYMRQLSDLESTVSQLRSElreakrmye 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   399 ---PAPEKGEVLGDAlQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERS---RFEDEKQQLASLIADLQSS 472
Cdd:pfam15921  342 dkiEELEKQLVLANS-ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEqnkRLWDRDTGNSITIDHLRRE 420

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   473 VSNLSQAKEELEQ-----ASQAQGaQLTAQLTSMTGLNATLQQRDQELASLkEQAKKEQAQMLQTMQEQEQAAQGLRQQV 547
Cdd:pfam15921  421 LDDRNMEVQRLEAllkamKSECQG-QMERQMAAIQGKNESLEKVSSLTAQL-ESTKEMLRKVVEELTAKKMTLESSERTV 498

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   548 EQLSSSLKLKEQQLEEAAKE--QEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDAR 625
Cdd:pfam15921  499 SDLTASLQEKERAIEATNAEitKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV 578

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   626 DNAQTSVTQAQQEKAELSQKIG-------ELHACIEASHQEQRQVQARVTELEAQ-----------LKAEQQKTTEREKV 687
Cdd:pfam15921  579 GQHGRTAGAMQVEKAQLEKEINdrrlelqEFKILKDKKDAKIRELEARVSDLELEkvklvnagserLRAVKDIKQERDQL 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   688 VQEKAQLQEQLRALEESLKITKGSLE---EEKRRAADALKEQQCRATEMEAESRSLMEQRERE-----------QKELEQ 753
Cdd:pfam15921  659 LNEVKTSRNELNSLSEDYEVLKRNFRnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgmQKQITA 738

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300   754 EKAGRKGLEARIQQLEEAH----------QAETEALRHELAEATASQHRAESECErLIREVESRQK 809
Cdd:pfam15921  739 KRGQIDALQSKIQFLEEAMtnankekhflKEEKNKLSQELSTVATEKNKMAGELE-VLRSQERRLK 803
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
412-974 7.54e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 61.08  E-value: 7.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSrfEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4913   256 PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL--EELRAELARLEAELERLEARLDALREELDELEAQIR 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  492 AQLTAQLtsmtglnatlqqrdqelaslkEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4913   334 GNGGDRL---------------------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL 392

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEkdakLESLQQQlqaandardnaQTSVTQAQQE-KAELSQK----- 645
Cdd:COG4913   393 LEALEEELEALEEALAEAEAALRDLRRELRELEAE----IASLERR-----------KSNIPARLLAlRDALAEAlglde 457

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  646 -----IGELhacIEASHQEQR--------------------QVQARVTELEAQLKAEQQKTTERekvVQEKAQLQEQLRA 700
Cdd:COG4913   458 aelpfVGEL---IEVRPEEERwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVYER---VRTGLPDPERPRL 531

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  701 LEESL--KIT------KGSLEEEKRRAADALKeqqCR-ATEMEAESRSLMEQREREQKELEQEKAGRKGLEAR------- 764
Cdd:COG4913   532 DPDSLagKLDfkphpfRAWLEAELGRRFDYVC---VDsPEELRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRyvlgfdn 608

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  765 IQQLeeahqaetEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygAMFQEQLMALKGEKTGQEVQEE 844
Cdd:COG4913   609 RAKL--------AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA----EYSWDEIDVASAEREIAELEAE 676

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  845 AVEIHSEgqpgqqQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLEL 924
Cdd:COG4913   677 LERLDAS------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300  925 LKEppRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQmggELERLRAA 974
Cdd:COG4913   751 LEE--RFAAALGDAVERELRENLEERIDALRARLNRAEE---ELERAMRA 795
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 463-681 1.28e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.39  E-value: 1.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  463 ASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQG 542
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  543 LRQQVEQLSSSLKlKEQQLEEAAKEQEATRQDHAQQLAI-------VAEAREASLRERDTARQQLETVEKEKDAKLESLQ 615
Cdd:COG4942    99 LEAQKEELAELLR-ALYRLGRQPPLALLLSPEDFLDAVRrlqylkyLAPARREQAEELRADLAELAALRAELEAERAELE 177

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300  616 QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKT 681
Cdd:COG4942   178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 998-1681 1.50e-08

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 60.35  E-value: 1.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  998 QERGQAQADLAQE--KAAKAELEmRLQNTLNEQRVEFAALQEAL-----AHALTEK-----EGTDQELAKLRGQEAAQRT 1065
Cdd:COG3096   377 LAEAEARLEAAEEevDSLKSQLA-DYQQALDVQQTRAIQYQQAVqalekARALCGLpdltpENAEDYLAAFRAKEQQATE 455

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1066 ELKELQQTLEQLKI---------QLVKKekehPAGGASGEDASGPGTQS-ETAGKTDAPGPELQALRAEISKLEQQCQQQ 1135
Cdd:COG3096   456 EVLELEQKLSVADAarrqfekayELVCK----IAGEVERSQAWQTARELlRRYRSQQALAQRLQQLRAQLAELEQRLRQQ 531

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1136 QQQV---EGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEW-KAQVAR 1211
Cdd:COG3096   532 QNAErllEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWlAAQDAL 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1212 GQQEAERKSSLISSleEEVSILNRQVLEKEGESKELKRLVVaesEKSQKLEERLRLLQVETASNSAR------------- 1278
Cdd:COG3096   612 ERLREQSGEALADS--QEVTAAMQQLLEREREATVERDELA---ARKQALESQIERLSQPGGAEDPRllalaerlggvll 686

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1279 -----------AAERS---------------SALREEVQSL-----------------------REEVEKQRVVSENSRQ 1309
Cdd:COG3096   687 seiyddvtledAPYFSalygparhaivvpdlSAVKEQLAGLedcpedlyliegdpdsfddsvfdAEELEDAVVVKLSDRQ 766

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1310 -------EL-----ASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVsellpAKHLCQQlqaeqaaaekrF 1377
Cdd:COG3096   767 wrysrfpEVplfgrAAREKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSQFV-----GGHLAVA-----------F 830

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1378 REELEQSKQAaggLQAELMRAQRELgelgslrqkiVEQERAAQQLRAEKASYAEQLSMLKKAHG---LLAEEnrGLGERa 1454
Cdd:COG3096   831 APDPEAELAA---LRQRRSELEREL----------AQHRAQEQQLRQQLDQLKEQLQLLNKLLPqanLLADE--TLADR- 894

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1455 nlgRQFLEVELDQARE--KYVQE-----------LAAVRTDAETHlAEMRQEAQSTSRELEVMTAKYEgAKVKVLEERQR 1521
Cdd:COG3096   895 ---LEELREELDAAQEaqAFIQQhgkalaqleplVAVLQSDPEQF-EQLQADYLQAKEQQRRLKQQIF-ALSEVVQRRPH 969

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1522 FQ-EERQKLTAQVEELSKKLtehdqaskvqQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQkeqaaehyklqmekAK 1600
Cdd:COG3096   970 FSyEDAVGLLGENSDLNEKL----------RARLEQAEEARREAREQLRQAQAQYSQYNQVLAS--------------LK 1025

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1601 THYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERlgRELQQAGLKTKeaeQTCRHLTAQVRSLEAQVAHADQQLRDLG 1680
Cdd:COG3096  1026 SSRDAKQQTLQELEQELEELGVQADAEAEERARIRR--DELHEELSQNR---SRRSQLEKQLTRCEAEMDSLQKRLRKAE 1100


                  .
gi 254675300 1681 K 1681
Cdd:COG3096  1101 R 1101
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 1146-1652 1.94e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 59.74  E-value: 1.94e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1146 LKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQREL--QALRAKAQDHSKAEEEWKaQVARGQQEAERKsslI 1223
Cdd:pfam05483  160 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELrvQAENARLEMHFKLKEDHE-KIQHLEEEYKKE---I 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1224 SSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLlqveTASNSARAAERSSALREEVQSLREEVEKQRVV 1303
Cdd:pfam05483  236 NDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKL----QDENLKELIEKKDHLTKELEDIKMSLQRSMST 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1304 SENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKhlcqqlqaeqaaaekrfREELEQ 1383
Cdd:pfam05483  312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTE-----------------QQRLEK 374

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1384 SKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKasyaEQLSMLKKAHGLLAEENRGLGERAnlgrqfleV 1463
Cdd:pfam05483  375 NEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAED----EKLLDEKKQFEKIAEELKGKEQEL--------I 442

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1464 ELDQAREKYVQELaavrtdaETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLE---ERQRFQEERQKLTAQVEELSKKL 1540
Cdd:pfam05483  443 FLLQAREKEIHDL-------EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEltaHCDKLLLENKELTQEASDMTLEL 515

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1541 TEHDQ----ASKVQQQKLKAFQA-------QRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ 1609
Cdd:pfam05483  516 KKHQEdiinCKKQEERMLKQIENleekemnLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 254675300  1610 NQKLQEQLQD----LEELQKENKELRSEAERLGRELQQAGLKTKEAE 1652
Cdd:pfam05483  596 CNNLKKQIENknknIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 252-817 2.47e-08

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 59.42  E-value: 2.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   252 MQQRIDHLALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS----QLSEENGDLSFKVRE 327
Cdd:pfam01576    7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAarkqELEEILHELESRLEE 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   328 FANHLQQLQGafndlieEHSKASQEWAEKQARLENELST--ALQ-DKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKG 404
Cdd:pfam01576   87 EEERSQQLQN-------EKKKMQQHIQDLEEQLDEEEAArqKLQlEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEE 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   405 EVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQllaeRSRFEDEKQQLASLIADLQSSVSNLSQAKEELE 484
Cdd:pfam01576  160 RISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKG----RQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   485 QASQAQGAQLTAQLTSM---TGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkEQQL 561
Cdd:pfam01576  236 AQLAKKEEELQAALARLeeeTAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL---EDTL 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   562 EEAAKEQEAtrqdHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:pfam01576  313 DTTAAQQEL----RSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   642 LSQKIGELHACIEASHQEQRQVQARVTELEAQL-KAEQQKTTEREKVVQEKAQLQEQLRALEE----SLKITK--GSLEE 714
Cdd:pfam01576  389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLsESERQRAELAEKLSKLQSELESVSSLLNEaegkNIKLSKdvSSLES 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   715 EKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLeeahQAETEALRHELAEATASQHRAE 794
Cdd:pfam01576  469 QLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTL----QAQLSDMKKKLEEDAGTLEALE 544

                          570       580
                   ....*....|....*....|...
gi 254675300   795 SECERLIREVESRQKRFEARQQE 817
Cdd:pfam01576  545 EGKKRLQRELEALTQQLEEKAAA 567
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
798-1331 2.57e-08

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 59.28  E-value: 2.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  798 ERLIREVESRQKRFEArqQEEARYGAMFQEQLMALKgektgQEVQEEAVEI-HSEGQPGQQQSQLAQLHASLAKAIQQVQ 876
Cdd:PRK02224  179 ERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLE-----SELAELDEEIeRYEEQREQARETRDEADEVLEEHEERRE 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  877 EKEVraqkLVDDLSALQEKMAATNKEVACLKTLVlkagEQQETASLELLKEppRAANRASDQLGEQQGrpfSSTHAAVKA 956
Cdd:PRK02224  252 ELET----LEAEIEDLRETIAETEREREELAEEV----RDLRERLEELEEE--RDDLLAEAGLDDADA---EAVEARREE 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  957 MEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRlQNTLNEQRVEFAALQ 1036
Cdd:PRK02224  319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELR 397

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1037 EALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAG-----GASGEDASGPGTQSETAGKT 1111
Cdd:PRK02224  398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGkcpecGQPVEGSPHVETIEEDRERV 477

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1112 DAPGPELQALRAEISKLEqqcqqqqqqveglthslksERACRAEQDKALETLQGQLEEKAR---ELGHNQAASASAQRE- 1187
Cdd:PRK02224  478 EELEAELEDLEEEVEEVE-------------------ERLERAEDLVEAEDRIERLEERREdleELIAERRETIEEKREr 538

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1188 LQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEvsilnRQVLEKEGESKELKRLVVAESEKSQKLEERLRL 1267
Cdd:PRK02224  539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK-----LAELKERIESLERIRTLLAAIADAEDEIERLRE 613

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300 1268 LQVETASNSARAAERSSALREEVQSLREEVEKQRVvsENSRQELASQAERAEELGQELKAWQEK 1331
Cdd:PRK02224  614 KREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEYLEQVEEKLDELREE 675
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 274-698 2.64e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 59.26  E-value: 2.64e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   274 SELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGD----LSFKVREFANHLQQLQGAFNDLIEEHSKA 349
Cdd:TIGR04523  218 SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKikkqLSEKQKELEQNNKKIKELEKQLNQLKSEI 297

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   350 SQEWAEKQARLENELSTAL--QDKKCLEEKNEILQG--KLSQLEDQATRLQ------ESPAPEKGEVLGDAL-QLDTLKQ 418
Cdd:TIGR04523  298 SDLNNQKEQDWNKELKSELknQEKKLEEIQNQISQNnkIISQLNEQISQLKkeltnsESENSEKQRELEEKQnEIEKLKK 377

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   419 EAAKLATDNTQLQTRVETLECERGKQEAQ----------LLAERSRFEDEKQQLASLIADLQSSVSNLSQAK-------E 481
Cdd:TIGR04523  378 ENQSYKQEIKNLESQINDLESKIQNQEKLnqqkdeqikkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkeliiK 457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   482 ELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELaslkeqakKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQL 561
Cdd:TIGR04523  458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL--------KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   562 EEAAKEQEatrqdhaqqLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:TIGR04523  530 ESEKKEKE---------SKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300   642 LSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKtteREKVVQEKAQLQEQL 698
Cdd:TIGR04523  601 LIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSK---KNKLKQEVKQIKETI 654
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1520-1728 2.65e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 59.30  E-value: 2.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1520 QRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKA 1599
Cdd:TIGR02168  235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1600 KTHYDAKK----QQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQ 1675
Cdd:TIGR02168  315 ERQLEELEaqleELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 254675300  1676 LRDLGKFQVATDALKSREPQVKPQLDLSIDSLDLSLEEGTPCSVASKLPRTQP 1728
Cdd:TIGR02168  395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 305-675 4.39e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.54  E-value: 4.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   305 SQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGK 384
Cdd:TIGR02169  166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   385 LSQLEDQATRLQESpAPEKGEVLGDALQ-LDTLKQEAAKLATDNT-QLQTRVETLECERGKQEAQLLAErsrfEDEKQQL 462
Cdd:TIGR02169  246 LASLEEELEKLTEE-ISELEKRLEEIEQlLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEK----ERELEDA 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   463 ASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAqltsmtgLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQG 542
Cdd:TIGR02169  321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   543 LRQQVEQLsSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKekdaKLESLQQQLQAAN 622
Cdd:TIGR02169  394 LEKLKREI-NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW----KLEQLAADLSKYE 468

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|...
gi 254675300   623 DARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLK 675
Cdd:TIGR02169  469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1116-1647 5.65e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 58.15  E-value: 5.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1116 PELQALRAEISKLEQQCQQQQQQVEGLThSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKA 1195
Cdd:PRK03918  214 SELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1196 QDHSKAEE---EWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLV--VAESEKSQKLEERLRLLQV 1270
Cdd:PRK03918  293 EEYIKLSEfyeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEkrLEELEERHELYEEAKAKKE 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1271 ETASNSARAAERSSalrEEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQ 1350
Cdd:PRK03918  373 ELERLKKRLTGLTP---EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEH 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1351 ALvsELLPAKHLcqqLQAEQAAAEKRFREELEQSKQAAGGLQAELMRaQRELGELGSLRQKIVEQERAAQQLRAEKASY- 1429
Cdd:PRK03918  450 RK--ELLEEYTA---ELKRIEKELKEIEEKERKLRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNLEELEKk 523

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1430 AEQLSMLKKAHGLLAEENRGLGERANLGRQF------LEVELDQAREkyvqELAAVRTDAETHLAEMRQEAQSTSRELEV 1503
Cdd:PRK03918  524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELkkklaeLEKKLDELEE----ELAELLKELEELGFESVEELEERLKELEP 599

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1504 MTAKYEGAKvKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKafQAQRGESQQEVQRLQTQLNELQAQLS 1583
Cdd:PRK03918  600 FYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE--ELEKKYSEEEYEELREEYLELSRELA 676

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300 1584 QKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQE---QLQDLEELQKENKELRSEAERLGRELQQAGLK 1647
Cdd:PRK03918  677 GLRAELEELEKRREEIKKTLEKLKEELEEREKakkELEKLEKALERVEELREKVKKYKALLKERALS 743
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 262-864 5.98e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 58.19  E-value: 5.98e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   262 LNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNL-----------------------KTEKSQMDRKIS------ 312
Cdd:pfam05483  108 LQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLikennatrhlcnllketcarsaeKTKKYEYEREETrqvymd 187

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   313 -----------------QLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQ----EWAEKQARLEN--------- 362
Cdd:pfam05483  188 lnnniekmilafeelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSllliQITEKENKMKDltflleesr 267

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   363 ------ELSTALQDKKcLEEKNEILQGKLSQLEDQATRLQESPAPEKgeVLGDALQL------------DTLKQEAAKLA 424
Cdd:pfam05483  268 dkanqlEEKTKLQDEN-LKELIEKKDHLTKELEDIKMSLQRSMSTQK--ALEEDLQIatkticqlteekEAQMEELNKAK 344

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   425 TDNTQLQTRVETLECergKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLsqakEELEQASQAQGAQLtAQLTSMTGL 504
Cdd:pfam05483  345 AAHSFVVTEFEATTC---SLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL----EEMTKFKNNKEVEL-EELKKILAE 416

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   505 NATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEatrQDHAQQLAIVAE 584
Cdd:pfam05483  417 DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE---KEKLKNIELTAH 493

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   585 AREASLRERDTARQQLETV--EKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE----KAELSQKIGELHACIEASHQ 658
Cdd:pfam05483  494 CDKLLLENKELTQEASDMTleLKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDElesvREEFIQKGDEVKCKLDKSEE 573

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   659 EQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKitKGSLEEEKRRAADALKEQQCRaTEMEAESR 738
Cdd:pfam05483  574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK--KKGSAENKQLNAYEIKVNKLE-LELASAKQ 650

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   739 SLMEQREREQKELEQEKAGRKGLearIQQLEEAHQAETEALR----------HELAEATASQHRAESECERLIREVESRQ 808
Cdd:pfam05483  651 KFEEIIDNYQKEIEDKKISEEKL---LEEVEKAKAIADEAVKlqkeidkrcqHKIAEMVALMEKHKHQYDKIIEERDSEL 727

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300   809 KRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQL 864
Cdd:pfam05483  728 GLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAIL 783
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1243-1670 6.66e-08

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 57.86  E-value: 6.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1243 ESKELKRLVVAESEKSQKLEERLRLLQvETASNSARAAERSSALREEVQSLREEVEKQRVVSENS--RQELASQAERAEE 1320
Cdd:COG4717    72 ELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEalEAELAELPERLEE 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1321 LGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQR 1400
Cdd:COG4717   151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1401 ELGELGSLRQKIVEQERAaQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVR 1480
Cdd:COG4717   228 ELEQLENELEAAALEERL-KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1481 TDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEER-QRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQA 1559
Cdd:COG4717   307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRiEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEE 386

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1560 --QRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAkthydakkQQNQKLQEQLQDLEELQKENKELRSEAERL 1637
Cdd:COG4717   387 lrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--------ELEEELEELEEELEELEEELEELREELAEL 458

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 254675300 1638 GRELQQAGLKTK--EAEQTCRHLTAQVRSLEAQVA 1670
Cdd:COG4717   459 EAELEQLEEDGElaELLQELEELKAELRELAEEWA 493
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 272-908 8.36e-08

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 57.75  E-value: 8.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   272 EPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREfanhlqqlqgAFNDLIEEHSKASQ 351
Cdd:TIGR00606  246 ELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE----------QLNDLYHNHQRTVR 315

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   352 EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQ--LDTLKQEAAKLATDNTQ 429
Cdd:TIGR00606  316 EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRleLDGFERGPFSERQIKNF 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   430 LQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQ 509
Cdd:TIGR00606  396 HTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIL 474

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   510 QRDQEL-ASLKEQAKKEQAQMLQTMQEQEQAaqgLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaivaeaREA 588
Cdd:TIGR00606  475 ELDQELrKAERELSKAEKNSLTETLKKEVKS---LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ------------MEM 539

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   589 SLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDnaqtSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVT 668
Cdd:TIGR00606  540 LTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED----WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE 615

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   669 ELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLK----ITKGSLEEEKRRAADALKEQQC-----RATEMEAESRS 739
Cdd:TIGR00606  616 SKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKqramLAGATAVYSQFITQLTDENQSCcpvcqRVFQTEAELQE 695

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   740 LMEQRER-------EQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFE 812
Cdd:TIGR00606  696 FISDLQSklrlapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   813 ARQQEEarygamfQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:TIGR00606  776 TIMPEE-------ESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN 848

                          650
                   ....*....|....*.
gi 254675300   893 QEKMAATNKEVACLKT 908
Cdd:TIGR00606  849 RKLIQDQQEQIQHLKS 864
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1155-1611 1.03e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 57.08  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAErksslISSLEEEVSILN 1234
Cdd:COG4717    78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAE-----LAELPERLEELE 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1235 RQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQ 1314
Cdd:COG4717   153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1315 AERAEELGQELKAWQEKFFQKEQA-LSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQA 1393
Cdd:COG4717   233 ENELEAAALEERLKEARLLLLIAAaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1394 elmraqrelgelgslrQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYV 1473
Cdd:COG4717   313 ----------------LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALL 376

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1474 QELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERqkLTAQVEELSKKLTEHDQASKVQQQK 1553
Cdd:COG4717   377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEELREE 454

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1554 LKAFQAQRG--ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQ 1611
Cdd:COG4717   455 LAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
mukB PRK04863
chromosome partition protein MukB;
328-674 1.17e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 57.27  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  328 FANHLQQLQGAFNDL---IEEHSKASQEWAEKQARLENELSTALQDKKCLEekneilqgklSQLEDQATRLqespapekg 404
Cdd:PRK04863  346 QQEKIERYQADLEELeerLEEQNEVVEEADEQQEENEARAEAAEEEVDELK----------SQLADYQQAL--------- 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  405 evlgDALQLDTLKQEAAKLATDNTQLQTRVETLECErgkqeaQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELE 484
Cdd:PRK04863  407 ----DVQQTRAIQYQQAVQALERAKQLCGLPDLTAD------NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  485 QASQAQ---GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQL 561
Cdd:PRK04863  477 QAYQLVrkiAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDEL 556

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  562 EEAAKEQEATRQDHAQQLAIVAEAREaslrerdTARQQLETVeKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:PRK04863  557 EQLQEELEARLESLSESVSEARERRM-------ALRQQLEQL-QARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQD 628

                         330       340       350
                  ....*....|....*....|....*....|...
gi 254675300  642 LSQKIGELHACIEASHQEQRQVQARVTELEAQL 674
Cdd:PRK04863  629 VTEYMQQLLERERELTVERDELAARKQALDEEI 661
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 433-775 1.17e-07

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 57.27  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  433 RVETLECERGKQEAQLLAERSRFEDEKQQLA-------SLIADLQSSVSNLS--------QAK--------EELEQASQA 489
Cdd:COG3096   286 RALELRRELFGARRQLAEEQYRLVEMARELEelsaresDLEQDYQAASDHLNlvqtalrqQEKieryqedlEELTERLEE 365

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  490 QGAQLTAQLTSMTGLNATLQQRDQELASLKEQ-AKKEQA-QMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEE---- 563
Cdd:COG3096   366 QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQlADYQQAlDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDylaa 445

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  564 -AAKEQEATRQ--DHAQQLAIVAEAReaslRERDTARQQLETV--EKEKDAKLESLQQQLQAANDARDNAQTsVTQAQQE 638
Cdd:COG3096   446 fRAKEQQATEEvlELEQKLSVADAAR----RQFEKAYELVCKIagEVERSQAWQTARELLRRYRSQQALAQR-LQQLRAQ 520

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  639 KAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRR 718
Cdd:COG3096   521 LAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  719 A------ADALKEQQCRATEMEAESRSLME------QREREQKELEQEKAGRKG-LEARIQQLEEAHQAE 775
Cdd:COG3096   601 ApawlaaQDALERLREQSGEALADSQEVTAamqqllEREREATVERDELAARKQaLESQIERLSQPGGAE 670
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 371-913 1.20e-07

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 57.29  E-value: 1.20e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   371 KKCLEEKNEILQGKLSQLEDQATRLQESPAPEKgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECE---------- 440
Cdd:TIGR00618  207 TLCTPCMPDTYHERKQVLEKELKHLREALQQTQ-QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQeavleetqer 285

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   441 --RGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASL 518
Cdd:TIGR00618  286 inRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQ 598
Cdd:TIGR00618  366 SIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   599 QLETVEKEKDAKlESLQQQLQAANDARdnaqtsvTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQ 678
Cdd:TIGR00618  446 AITCTAQCEKLE-KIHLQESAQSLKER-------EQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   679 QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEE-KRRAADALKEQQCRATEMEAESR--SLMEQREREQKELEQ-E 754
Cdd:TIGR00618  518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSErKQRASLKEQMQEIQQSFSILTQCdnRSKEDIPNLQNITVRlQ 597

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   755 KAGRKGLEARIQQLEEAHqAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKG 834
Cdd:TIGR00618  598 DLTEKLSEAEDMLACEQH-ALLRKLQPEQDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELL 675

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   835 EKTGQEVQEEAVEIHSEGQP----GQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLV 910
Cdd:TIGR00618  676 ASRQLALQKMQSEKEQLTYWkemlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755


                   ...
gi 254675300   911 LKA 913
Cdd:TIGR00618  756 LKA 758
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1470-1713 1.21e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.37  E-value: 1.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1470 EKYvQELAAVRTDAETHLAEMR-QEAQSTSRELEVMTAKYEgakvkvlEERQRFQEERQKLTAQVEELSKKLTEHDQASK 1548
Cdd:TIGR02168  213 ERY-KELKAELRELELALLVLRlEELREELEELQEELKEAE-------EELEELTAELQELEEKLEELRLEVSELEEEIE 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1549 VQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENK 1628
Cdd:TIGR02168  285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1629 ELRSEAERLGRELQQAGL----KTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGkfQVATDALKSREPQVKPQLDLSI 1704
Cdd:TIGR02168  365 AELEELESRLEELEEQLEtlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQ--QEIEELLKKLEEAELKELQAEL 442


                   ....*....
gi 254675300  1705 DSLDLSLEE 1713
Cdd:TIGR02168  443 EELEEELEE 451
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 376-593 1.63e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 55.93  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  376 EKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRF 455
Cdd:COG4942    20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  456 EDEKQQLASLIADLQS-----------SVSNLSQAK------EELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASL 518
Cdd:COG4942   100 EAQKEELAELLRALYRlgrqpplalllSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRER 593
Cdd:COG4942   180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
mukB PRK04863
chromosome partition protein MukB;
429-820 1.63e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 56.89  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  429 QLQTRVETLECERGKQEAQLLAERSRFEDEKQQLaSLIADLQSSVSNLS---------QAKEELEQASQAQG--AQLTAQ 497
Cdd:PRK04863  841 QLNRRRVELERALADHESQEQQQRSQLEQAKEGL-SALNRLLPRLNLLAdetladrveEIREQLDEAEEAKRfvQQHGNA 919

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  498 LTSMTGLNATLQQRDQELASLKEQAKKEQaQMLQTMQEQEQAAQGLRQQVEQLSSSLKlkEQQLEEAAKEQEATRQDHAQ 577
Cdd:PRK04863  920 LAQLEPIVSVLQSDPEQFEQLKQDYQQAQ-QTQRDAKQQAFALTEVVQRRAHFSYEDA--AEMLAKNSDLNEKLRQRLEQ 996

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  578 qlaivAEAreaslrERDTARQQLetveKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSqkigeLHACIEAsh 657
Cdd:PRK04863  997 -----AEQ------ERTRAREQL----RQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG-----VPADSGA-- 1054

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 qeQRQVQARVTELEAQLKAEQQKTTEREKVVQ----EKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEM 733
Cdd:PRK04863 1055 --EERARARRDELHARLSANRSRRNQLEKQLTfceaEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVER 1132

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  734 EAESR-----SLMEQREREQKELEQEKAGRKGLEARIQQL---EEAHQAET-------------EALRHELAEAT---AS 789
Cdd:PRK04863 1133 RLHRRelaylSADELRSMSDKALGALRLAVADNEHLRDVLrlsEDPKRPERkvqfyiavyqhlrERIRQDIIRTDdpvEA 1212

                         410       420       430
                  ....*....|....*....|....*....|.
gi 254675300  790 QHRAESECERLIREVESRQKRFEARQQEEAR 820
Cdd:PRK04863 1213 IEQMEIELSRLTEELTSREQKLAISSESVAN 1243
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 275-752 1.94e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 56.72  E-value: 1.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   275 ELEELRGKNESltvRLHETLKQCQNLKTEKSQMDRKI----SQLSEENG---DLSFKVREFANHLQQLQGAFNDLIEEHS 347
Cdd:pfam01576   72 ELEEILHELES---RLEEEEERSQQLQNEKKKMQQHIqdleEQLDEEEAarqKLQLEKVTTEAKIKKLEEDILLLEDQNS 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   348 KASQEWAEKQARLeNELSTALQDKkclEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDN 427
Cdd:pfam01576  149 KLSKERKLLEERI-SEFTSNLAEE---EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI 224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   428 TQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGA-------------QL 494
Cdd:pfam01576  225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKaekqrrdlgeeleAL 304

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   495 TAQLTSMTGLNATLQ----QRDQELASLK----EQAKKEQAQMLQTMQEQEQAAQGLRQQVEQlsssLKLKEQQLEEAAK 566
Cdd:pfam01576  305 KTELEDTLDTTAAQQelrsKREQEVTELKkaleEETRSHEAQLQEMRQKHTQALEELTEQLEQ----AKRNKANLEKAKQ 380

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   567 EQEATRQDHAQQLAIVAEAREASLRERDTARQQL----------ETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQ 636
Cdd:pfam01576  381 ALESENAELQAELRTLQQAKQDSEHKRKKLEGQLqelqarlsesERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   637 QEKAELSQKIGELHACIEASHQEQRQVQARVTELEA-------QLKAEQQKTTEREKVVQE-KAQLQEQLRALEESLKIT 708
Cdd:pfam01576  461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDernslqeQLEEEEEAKRNVERQLSTlQAQLSDMKKKLEEDAGTL 540

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....
gi 254675300   709 KGsLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:pfam01576  541 EA-LEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELD 583
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 343-1090 2.09e-07

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 56.52  E-value: 2.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   343 IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQAtrlqespapekgevlgdalqlDTLKQEAAK 422
Cdd:pfam02463  158 IEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK---------------------KALEYYQLK 216

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   423 LATDNTQLQTRVETLECERGKQEAQLLAERsrfEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMT 502
Cdd:pfam02463  217 EKLELEEEYLLYLDYLKLNEERIDLLQELL---RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   503 GLNATLQQRDQELaSLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLaiv 582
Cdd:pfam02463  294 EEEELKSELLKLE-RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE--- 369

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   583 aEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQ 662
Cdd:pfam02463  370 -QLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE 448

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   663 VQARVTELEAqLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLME 742
Cdd:pfam02463  449 EKEELEKQEL-KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISA 527

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   743 QREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAE-----------------ATASQHRAESECERLIREVE 805
Cdd:pfam02463  528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALtelplgarklrllipklKLPLKSIAVLEIDPILNLAQ 607

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   806 SRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKL 885
Cdd:pfam02463  608 LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES 687

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   886 VDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPFS-STHAAVKAMEREAEQM 964
Cdd:pfam02463  688 ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKS 767

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   965 GGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLaQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALT 1044
Cdd:pfam02463  768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL-KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQ 846

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*.
gi 254675300  1045 EKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPA 1090
Cdd:pfam02463  847 KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
584-1314 3.46e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 55.84  E-value: 3.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  584 EAREASLRE------RDTARQQLETVEKEKDAKLESLQQQLQAAndarDNAQTSVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:PRK03918  145 ESREKVVRQilglddYENAYKNLGEVIKEIKRRIERLEKFIKRT----ENIEELIKEKEKELEEVLREINEISSELPELR 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLE--EEKRRAADALKEQQCRATEMEA 735
Cdd:PRK03918  221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSE 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQAETEALRHElaeatasqhraESECERLIREVESRQKRFEARQ 815
Cdd:PRK03918  301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-EERLEELKKK-----------LKELEKRLEELEERHELYEEAK 368

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  816 QEearygamfQEQLMALKGEKTGQEVQeeaveihsegqpgqqqsqlaqlhaslaKAIQQVQEKEVRAQKLVDDLSALQEK 895
Cdd:PRK03918  369 AK--------KEELERLKKRLTGLTPE---------------------------KLEKELEELEKAKEEIEEEISKITAR 413

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  896 MAATNKEVACLKTLVLKageqqetasLELLKEPPRAANRASDQlgEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAAL 975
Cdd:PRK03918  414 IGELKKEIKELKKAIEE---------LKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  976 IKSQGQQQEERgqqerevaRLTQERGQAQadlaQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAK 1055
Cdd:PRK03918  483 RELEKVLKKES--------ELIKLKELAE----QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1056 LRGQEaaqrTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDasgpgtqsetagktdapgpelqALRAEISKLEQQCQQQ 1135
Cdd:PRK03918  551 LEELK----KKLAELEKKLDELEEELAELLKELEELGFESVE----------------------ELEERLKELEPFYNEY 604

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1136 QqqveglthSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAqdhskAEEEWKaqvaRGQQE 1215
Cdd:PRK03918  605 L--------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY-----SEEEYE----ELREE 667

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1216 AERKSSLISSLEEEVSILNRQVLEKEGESKELKRlvvaESEKSQKLEERLRLLQvetasnsaRAAERSSALREEVQSLRE 1295
Cdd:PRK03918  668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKE----ELEEREKAKKELEKLE--------KALERVEELREKVKKYKA 735

                         730
                  ....*....|....*....
gi 254675300 1296 EVEKQrvvSENSRQELASQ 1314
Cdd:PRK03918  736 LLKER---ALSKVGEIASE 751
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 491-722 3.51e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.77  E-value: 3.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  491 GAQLTAQLTSMTGLNATLQQRDQELASLK---EQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKE 567
Cdd:COG4942    12 ALAAAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  568 QEATRQDHAQQLAIVAEAREASLRERDTARQQLeTVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIG 647
Cdd:COG4942    92 IAELRAELEAQKEELAELLRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  648 ELHACIEASHQEQRQVQARvteLEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADA 722
Cdd:COG4942   171 AERAELEALLAELEEERAA---LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
620-1169 4.17e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.43  E-value: 4.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  620 AANDARDNAQTSVTQAQQEKAELSQKigELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLR 699
Cdd:PRK02224  177 GVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  700 ALEES---LKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEE------ 770
Cdd:PRK02224  255 TLEAEiedLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDrleecr 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  771 ----AHQAETEALRH---------------------ELAEATASQHRAESECERLIREVESRQKRFE---ARQQEEARYG 822
Cdd:PRK02224  335 vaaqAHNEEAESLREdaddleeraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRERFGdapVDLGNAEDFL 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  823 AMFQEQLMALKGE--------KTGQEVQEEAVEIHSEGQ-PGQQQSQLAQLHASlakaiqQVQEKEVRAQKLVDDLSALQ 893
Cdd:PRK02224  415 EELREERDELREReaeleatlRTARERVEEAEALLEAGKcPECGQPVEGSPHVE------TIEEDRERVEELEAELEDLE 488

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  894 EKMAATNKEVACLKTLVlkageqqetaslELLKEPPRAANRASD--QLGEQQgrpfsstHAAVKAMEREAEQMGGELERL 971
Cdd:PRK02224  489 EEVEEVEERLERAEDLV------------EAEDRIERLEERREDleELIAER-------RETIEEKRERAEELRERAAEL 549

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  972 RAAliksqgqqqeergqqerevARLTQERGQAQADLAQEKAAK-AELEMRLQnTLNEQRVEFAALQEALAhALTEKEGTD 1050
Cdd:PRK02224  550 EAE-------------------AEEKREAAAEAEEEAEEAREEvAELNSKLA-ELKERIESLERIRTLLA-AIADAEDEI 608

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1051 QELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQ 1130
Cdd:PRK02224  609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688

                         570       580       590
                  ....*....|....*....|....*....|....*....
gi 254675300 1131 QCQQQQqqveglthSLKSERACRAEQDKALETLQGQLEE 1169
Cdd:PRK02224  689 ELEELE--------ELRERREALENRVEALEALYDEAEE 719
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1387-1629 5.21e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.38  E-value: 5.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1387 AAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEvELD 1466
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA-ELE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1467 QAREKYVQELAAVRTDAETHLAEMrQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQA 1546
Cdd:COG4942    90 KEIAELRAELEAQKEELAELLRAL-YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1547 SKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhyklqmekakTHYDAKKQQNQKLQEQLQDLEELQKE 1626
Cdd:COG4942   169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----------AELAELQQEAEELEALIARLEAEAAA 238


                  ...
gi 254675300 1627 NKE 1629
Cdd:COG4942   239 AAE 241
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
407-640 5.31e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 55.02  E-value: 5.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  407 LGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSR-----FEDEKQQLASLIADLQSSvsnLSQAKE 481
Cdd:COG3206   157 LAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQ---LAEARA 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  482 ELEQAsQAQGAQLTAQLTSMTGLNATLQQrDQELASLKEQ---AKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKlke 558
Cdd:COG3206   234 ELAEA-EARLAALRAQLGSGPDALPELLQ-SPVIQQLRAQlaeLEAELAELSARYTPNHPDVIALRAQIAALRAQLQ--- 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  559 QQLEEAAKEQEATRQdhaqqlaiVAEAREASLRER-DTARQQLETVeKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQ 637
Cdd:COG3206   309 QEAQRILASLEAELE--------ALQAREASLQAQlAQLEARLAEL-PELEAELRRLEREVEVARELYESLLQRLEEARL 379


                  ...
gi 254675300  638 EKA 640
Cdd:COG3206   380 AEA 382
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1215-1536 5.36e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.74  E-value: 5.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1215 EAERKSSLISSLEEEVSILNRQVLEKeGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLR 1294
Cdd:pfam17380  267 ENEFLNQLLHIVQHQKAVSERQQQEK-FEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAME 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1295 EEVEKQRVVSENSRQELasQAERAEELGQELKAWQEkffqkeqaLSALQLEHTSTQALVSELLPAkhlcqqlqaeqaAAE 1374
Cdd:pfam17380  346 RERELERIRQEERKREL--ERIRQEEIAMEISRMRE--------LERLQMERQQKNERVRQELEA------------ARK 403

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1375 KRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSML-------KKAHGLLAEEN 1447
Cdd:pfam17380  404 VKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLrqqeeerKRKKLELEKEK 483

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1448 RGLGERANLGRQFLEVELDQAREKYVQElaavRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQ 1527
Cdd:pfam17380  484 RDRKRAEEQRRKILEKELEERKQAMIEE----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMR 559


                   ....*....
gi 254675300  1528 KLTAQVEEL 1536
Cdd:pfam17380  560 KATEERSRL 568
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 218-1087 5.72e-07

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 54.98  E-value: 5.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   218 KKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQC 297
Cdd:pfam02463  180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   298 QNLKTEKSQ--------MDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQ 369
Cdd:pfam02463  260 IEKEEEKLAqvlkenkeEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   370 DKKCLEEKnEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQtrvetlecERGKQEAQLL 449
Cdd:pfam02463  340 LEKELKEL-EIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK--------SEEEKEAQLL 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   450 AERSrfedekQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQM 529
Cdd:pfam02463  411 LELA------RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   530 LQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA 609
Cdd:pfam02463  485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   610 KLeslqqqLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ 689
Cdd:pfam02463  565 KL------VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   690 EKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:pfam02463  639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   770 EahqAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEaveih 849
Cdd:pfam02463  719 A---EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE----- 790

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   850 segqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEpp 929
Cdd:pfam02463  791 ------EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE-- 862

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   930 raaNRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQ 1009
Cdd:pfam02463  863 ---ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  1010 EKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKE 1087
Cdd:pfam02463  940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1397-1644 5.93e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.92  E-value: 5.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1397 RAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAhgllaEENRGLGERANLGRQFLEVELDQARekyVQEL 1476
Cdd:COG4913   229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERL-----AELEYLRAALRLWFAQRRLELLEAE---LEEL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1477 AAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEErqrfqeerqkLTAQVEELSKKLTEHDQASKVQQQKLKA 1556
Cdd:COG4913   301 RAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ----------LEREIERLERELEERERRRARLEALLAA 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1557 FQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhyklqmekakthyDAKKQQNQKLQEQLQDLEELQKENKELRSEAER 1636
Cdd:COG4913   371 LGLPLPASAEEFAALRAEAAALLEALEEELEALE-------------EALAEAEAALRDLRRELRELEAEIASLERRKSN 437


                  ....*...
gi 254675300 1637 LGRELQQA 1644
Cdd:COG4913   438 IPARLLAL 445
46 PHA02562
endonuclease subunit; Provisional
 305-567 6.11e-07

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 54.64  E-value: 6.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  305 SQMDR----KISQLSEENGDLSFKVrefaNHLQQLQGAFNDLIEEHSKAS-QEWAEKQARLENELSTALQDKKCLEEKNE 379
Cdd:PHA02562  166 SEMDKlnkdKIRELNQQIQTLDMKI----DHIQQQIKTYNKNIEEQRKKNgENIARKQNKYDELVEEAKTIKAEIEELTD 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  380 ILQGKLSQLEDQATRLQEspapekgevlgdalqldtLKQEAAKLATDNTQLQTRVETLE----CERGKQeaQLLAERSRF 455
Cdd:PHA02562  242 ELLNLVMDIEDPSAALNK------------------LNTAAAKIKSKIEQFQKVIKMYEkggvCPTCTQ--QISEGPDRI 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  456 EDEKQQlaslIADLQSSVSNLSQAKEELEQasqaQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMlqtmqE 535
Cdd:PHA02562  302 TKIKDK----LKELQHSLEKLDTAIDELEE----IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI-----E 368

                         250       260       270
                  ....*....|....*....|....*....|...
gi 254675300  536 QEQAAQGLR-QQVEQLSSSLKLKEQQLEEAAKE 567
Cdd:PHA02562  369 ELQAEFVDNaEELAKLQDELDKIVKTKSELVKE 401
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1211-1645 6.22e-07

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 54.96  E-value: 6.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1211 RGQQEAERKSSLISSLEEEVSILNRQVLEKEGE----SKELKRLVVAESEKSQKLE---ERLRLLQvetasNSARAAERS 1283
Cdd:COG3096   275 RHANERRELSERALELRRELFGARRQLAEEQYRlvemARELEELSARESDLEQDYQaasDHLNLVQ-----TALRQQEKI 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1284 SALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLC 1363
Cdd:COG3096   350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALC 429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1364 qqlqaeqaaaekrfrEELEQSKQAAGGLQAELMRAQRELGE-LGSLRQKIVEQERAAQQlraekasYAEQLSMLKKAHGL 1442
Cdd:COG3096   430 ---------------GLPDLTPENAEDYLAAFRAKEQQATEeVLELEQKLSVADAARRQ-------FEKAYELVCKIAGE 487

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1443 LaeenrglgERANLGRQFLEVeLDQAREKyvQELAAVRTDAETHLAEMRQEAQStSRELEVMTAKYEGAKVKVLEERQRF 1522
Cdd:COG3096   488 V--------ERSQAWQTAREL-LRRYRSQ--QALAQRLQQLRAQLAELEQRLRQ-QQNAERLLEEFCQRIGQQLDAAEEL 555

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1523 QEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGE-SQQEVQ--RLQTQLNELQAQLSQkeqaaehyklqmeka 1599
Cdd:COG3096   556 EELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKElAARAPAwlAAQDALERLREQSGE--------------- 620

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 254675300 1600 ktHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLG---RELQQAG 1645
Cdd:COG3096   621 --ALADSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPG 667
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
533-775 6.91e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 54.64  E-value: 6.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  533 MQEQEQAAQGLRQQVEQLssslklkEQQLEEAAKEQEATRQDHAqqlaIVAeareaslrerdtarqqLETVEKEKDAKLE 612
Cdd:COG3206   170 REEARKALEFLEEQLPEL-------RKELEEAEAALEEFRQKNG----LVD----------------LSEEAKLLLQQLS 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  613 SLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacieASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQeka 692
Cdd:COG3206   223 ELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVI--- 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  693 QLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLME---QREREQKELEQE-KAGRKGLEARIQQL 768
Cdd:COG3206   295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREvEVARELYESLLQRL 374


                  ....*..
gi 254675300  769 EEAHQAE 775
Cdd:COG3206   375 EEARLAE 381
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
 444-906 7.62e-07

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 54.42  E-value: 7.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  444 QEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtglnATLQQRDQELASLKEQAK 523
Cdd:PRK10246  217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQAL--------AAEEKAQPQLAALSLAQP 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  524 KEQAQML-QTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEE-------AAKEQEATRQDHAQQLAIVAEAR--------- 586
Cdd:PRK10246  289 ARQLRPHwERIQEQSAALAHTRQQIEEVNTRLQSTMALRARirhhaakQSAELQAQQQSLNTWLAEHDRFRqwnnelagw 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  587 EASLRERDTARQQLETVEkekdAKLESLQQQLQAAND------ARDNAQTSVTQAQQEKaeLSQKIGELHACIEASHQEQ 660
Cdd:PRK10246  369 RAQFSQQTSDREQLRQWQ----QQLTHAEQKLNALPAitltltADEVAAALAQHAEQRP--LRQRLVALHGQIVPQQKRL 442

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  661 RQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgSLEEEKRRAADALKEQQCRATEMEAESrsl 740
Cdd:PRK10246  443 AQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIK-DLEAQRAQLQAGQPCPLCGSTSHPAVE--- 518

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  741 meqrEREQKELEQEKAGRKGLEARIQQLEEahqaETEALRHELAEATASQHRAESECERLIREvesRQKRFEARQQEEAR 820
Cdd:PRK10246  519 ----AYQALEPGVNQSRLDALEKEVKKLGE----EGAALRGQLDALTKQLQRDESEAQSLRQE---EQALTQQWQAVCAS 587

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  821 YGAMFQEQlMALKGEKTGQEVQEEAVEihsegQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATN 900
Cdd:PRK10246  588 LNITLQPQ-DDIQPWLDAQEEHERQLR-----LLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQED 661


                  ....*.
gi 254675300  901 KEVACL 906
Cdd:PRK10246  662 EEASWL 667
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
253-649 8.08e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 54.39  E-value: 8.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  253 QQRIDHLALLNEKQAASSQEPSELEELRGKNESLtVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHL 332
Cdd:COG4717    91 AELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELE 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  333 QQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQ-ESPAPEKGEVLGDAL 411
Cdd:COG4717   170 AELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEnELEAAALEERLKEAR 249

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4717   250 LLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG 329

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  492 AQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLrQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4717   330 LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV-EDEEELRAALEQAEEYQELKEELEELE 408

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTS--VTQAQQEKAELSQKIGEL 649
Cdd:COG4717   409 EQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELREL 488
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 294-882 9.01e-07

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 54.28  E-value: 9.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   294 LKQCQNLKTEKSQMDRKISQLSEENGDLsfkvrefaNHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQD--- 370
Cdd:TIGR00606  500 KKEVKSLQNEKADLDRKLRKLDQEMEQL--------NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpn 571

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   371 KKCLEEKNEILQGKLSQLEDQATRLQESPAPekgevlGDALQLDTLKQEAAKLATDNTQLQTRVETLECErgKQEAQLLA 450
Cdd:TIGR00606  572 KKQLEDWLHSKSKEINQTRDRLAKLNKELAS------LEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ--DEESDLER 643

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   451 ERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQA---------SQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQ 521
Cdd:TIGR00606  644 LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   522 AKKE---QAQMLQT-MQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAtrqdhaqqlaIVAEAREASLRERD-TA 596
Cdd:TIGR00606  724 RRDEmlgLAPGRQSiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT----------IMPEEESAKVCLTDvTI 793

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   597 RQQLETVEKEKDAKLESLQQQLQAANDARdnAQTSVTQAQQEKAE----LSQKIGELHACIEASHQEQRQVQARVTELEA 672
Cdd:TIGR00606  794 MERFQMELKDVERKIAQQAAKLQGSDLDR--TVQQVNQEKQEKQHeldtVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   673 QLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:TIGR00606  872 EKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   753 QEKAGRKGLEARIQQLEEAHQAETEalrHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygAMFQEQLMAL 832
Cdd:TIGR00606  952 NIHGYMKDIENKIQDGKDDYLKQKE---TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE----RWLQDNLTLR 1024

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|.
gi 254675300   833 KGEKTGQEVQEEAVEihSEGQPGQQQ-SQLAQLHASLAKAIQQVQEKEVRA 882
Cdd:TIGR00606 1025 KRENELKEVEEELKQ--HLKEMGQMQvLQMKQEHQKLEENIDLIKRNHVLA 1073
PRK11281 PRK11281
mechanosensitive channel MscK;
412-712 9.12e-07

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 54.53  E-value: 9.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLEC--ERGKQEAQLLAERSRFEDEKQQLASLIADLQS-SVSNLSQAKEELEQASQ 488
Cdd:PRK11281   44 QLDALNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLSTLSL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  489 AQ-GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQM---LQTMQEQEQAAQGLRQQVEQLSSSLKLK---EQQL 561
Cdd:PRK11281  124 RQlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALRPSQRVLlqaEQAL 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  562 EEAAKEQEATRQDHAQQLAIVAEAReaslRERDTARQQLetvekekdakLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:PRK11281  204 LNAQNDLQRKSLEGNTQLQDLLQKQ----RDYLTARIQR----------LEHQLQLLQEAINSKRLTLSEKTVQEAQSQD 269

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  642 LSQKIGE---LHACIEASHQ-EQRQVQArvTELEAQLKAEQQKTtereKVVQEKAQlQEQlRALEESLKITKGSL 712
Cdd:PRK11281  270 EAARIQAnplVAQELEINLQlSQRLLKA--TEKLNTLTQQNLRV----KNWLDRLT-QSE-RNIKEQISVLKGSL 336
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 206-777 1.03e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 54.20  E-value: 1.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   206 ILQTPQFQMRRLKKQLADERSNRDDLELELSESLKLLTekdaqiamMQQRIDHLALLNEKQAA----SSQEPSELEELRG 281
Cdd:TIGR00618  312 IHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT--------LHSQEIHIRDAHEVATSireiSCQQHTLTQHIHT 383

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   282 KNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVRefANHLQQLQGAFNDLIEEHSKASQEWAEKQARLE 361
Cdd:TIGR00618  384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH--AKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   362 NELSTALQDKKCLEEKNEILQGKLSQL----EDQATRLQESPAPEKGEVLGDALQLdTLKQEAAKLATDNTQLQTRVETL 437
Cdd:TIGR00618  462 QESAQSLKEREQQLQTKEQIHLQETRKkavvLARLLELQEEPCPLCGSCIHPNPAR-QDIDNPGPLTRRMQRGEQTYAQL 540

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   438 ECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASqaqgaQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:TIGR00618  541 ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ-----NITVRLQDLTEKLSEAEDMLACEQH 615

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSS-SLKLKEQQLEEAAKeqeATRQDHAQQLAIvaeaREASLRERDTA 596
Cdd:TIGR00618  616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAlQLTLTQERVREHAL---SIRVLPKELLAS----RQLALQKMQSE 688

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   597 RQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACI-EASHQEQRQVQARVTELE---A 672
Cdd:TIGR00618  689 KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLkELMHQARTVLKARTEAHFnnnE 768

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   673 QLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:TIGR00618  769 EVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848

                          570       580
                   ....*....|....*....|....*
gi 254675300   753 QEKagrKGLEARIQQLEEAHQAETE 777
Cdd:TIGR00618  849 HQL---LKYEECSKQLAQLTQEQAK 870
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1117-1637 1.08e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 53.89  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEqdkaLETLQGQLEEKarelghnQAASASAQRELQALRAKAQ 1196
Cdd:PRK02224  214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREE----LETLEAEIEDL-------RETIAETEREREELAEEVR 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQvlekegeskelkrlvvaESEKSQKLEERlRLLQVETASNS 1276
Cdd:PRK02224  283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR-----------------DEELRDRLEEC-RVAAQAHNEEA 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1277 ARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:PRK02224  345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1357 LPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGElgsLRQKIVEQERAAQQLRAEKASYAEQLSML 1436
Cdd:PRK02224  425 REREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE---DRERVEELEAELEDLEEEVEEVEERLERA 501

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1437 KKAHGLLAEENRgLGERANLGRQFLEVELDQAREKYVQeLAAVRTDAETHLAEMR-QEAQSTSRELEVMTAKYEgakVKV 1515
Cdd:PRK02224  502 EDLVEAEDRIER-LEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEeKREAAAEAEEEAEEAREE---VAE 576

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1516 LEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQA--------QLSQKEQ 1587
Cdd:PRK02224  577 LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefdearieEAREDKE 656

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 254675300 1588 AAEHYKLQMEKAKTHYDAKKQQNQK----LQEQLQDLEELQKENKELRSEAERL 1637
Cdd:PRK02224  657 RAEEYLEQVEEKLDELREERDDLQAeigaVENELEELEELRERREALENRVEAL 710
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1525-1693 1.12e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.17  E-value: 1.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1525 ERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhyklQMEKAKTHYD 1604
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLE 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1605 AKKQQNQKLQEQLqdLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQV 1684
Cdd:COG1196   309 ERRRELEERLEEL--EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386


                  ....*....
gi 254675300 1685 ATDALKSRE 1693
Cdd:COG1196   387 ELLEALRAA 395
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1223-1679 1.31e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 53.49  E-value: 1.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1223 ISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAaerssalreevqslrEEVEKQRV 1302
Cdd:TIGR04523  105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKY---------------NDLKKQKE 169

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1303 VSENSRQELASQAERAEelgQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKhlcqqlqaeqaAAEKRFREELE 1382
Cdd:TIGR04523  170 ELENELNLLEKEKLNIQ---KNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELK-----------KQNNQLKDNIE 235

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1383 QSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQ-----------QLRAEKASYAEQLSMLK--KAHGLLAEENRG 1449
Cdd:TIGR04523  236 KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkeleqnnkkikELEKQLNQLKSEISDLNnqKEQDWNKELKSE 315

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1450 LGERANLGRQfLEVELDQArEKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEgakvKVLEERQRFQEERQKL 1529
Cdd:TIGR04523  316 LKNQEKKLEE-IQNQISQN-NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIE----KLKKENQSYKQEIKNL 389

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1530 TAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ 1609
Cdd:TIGR04523  390 ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ 469

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  1610 NQKLQEQL----QDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:TIGR04523  470 LKVLSRSInkikQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1186-1669 1.32e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 53.91  E-value: 1.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1186 RELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLvvaeSEKSQKLEERL 1265
Cdd:PRK03918  172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL----KEEIEELEKEL 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1266 RLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVsensrQELASQAERAEELGQELKAWQEKFFQKEQALSALQLE 1345
Cdd:PRK03918  248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-----KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1346 HTSTQALVSELLPAKHLCQQLQAEQAAAEKRFrEELEQSKQA---AGGLQAELMRAQRELG---------ELGSLRQKIV 1413
Cdd:PRK03918  323 INGIEERIKELEEKEERLEELKKKLKELEKRL-EELEERHELyeeAKAKKEELERLKKRLTgltpeklekELEELEKAKE 401

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1414 EQERAAQQLRAEKASYAEQLSMLKKAhglLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAEThLAEMRQE 1493
Cdd:PRK03918  402 EIEEEISKITARIGELKKEIKELKKA---IEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKE-IEEKERK 477

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1494 AQSTSRELEvmtakyegakvKVLEERQRFQEERqKLTAQVEELSKKLTEHDqaSKVQQQKLKAFQAQRGES---QQEVQR 1570
Cdd:PRK03918  478 LRKELRELE-----------KVLKKESELIKLK-ELAEQLKELEEKLKKYN--LEELEKKAEEYEKLKEKLiklKGEIKS 543

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1571 LQTQLNELQAQLSQKEQAAEHYK-LQMEKAKTHYDAKK---QQNQKLQEQLQDLEELQKENKELR---SEAERLGRELQQ 1643
Cdd:PRK03918  544 LKKELEKLEELKKKLAELEKKLDeLEEELAELLKELEElgfESVEELEERLKELEPFYNEYLELKdaeKELEREEKELKK 623

                         490       500
                  ....*....|....*....|....*.
gi 254675300 1644 AGLKTKEAEQTCRHLTAQVRSLEAQV 1669
Cdd:PRK03918  624 LEEELDKAFEELAETEKRLEELRKEL 649
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1452-1644 1.47e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 53.48  E-value: 1.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1452 ERANLGRQFLEVELDQAREKYVQ-ELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLT 1530
Cdd:COG3206   171 EEARKALEFLEEQLPELRKELEEaEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLG 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1531 AQVEELSKKLTEHDQASKVQQ-----QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAehyklqMEKAKTHYDA 1605
Cdd:COG3206   251 SGPDALPELLQSPVIQQLRAQlaeleAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI------LASLEAELEA 324

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 254675300 1606 KKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQA 1644
Cdd:COG3206   325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 405-1081 1.99e-06

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 53.26  E-value: 1.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   405 EVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAE----------RSRFEDEKQQLASLIADLQSSVS 474
Cdd:pfam01576    6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAEtelcaeaeemRARLAARKQELEEILHELESRLE 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   475 NLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLqTMQEQEQAAQGLRQQVEQLSSSL 554
Cdd:pfam01576   86 EEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIL-LLEDQNSKLSKERKLLEERISEF 164

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   555 KLKEQQLEEAAKEQEATRQDHAQQLAIVaearEASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQ 634
Cdd:pfam01576  165 TSNLAEEEEKAKSLSKLKNKHEAMISDL----EERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   635 AQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQEQLRA----LEESLKITKG 710
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERA---ARNKAEKQRRDLGEELEAlkteLEDTLDTTAA 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   711 SLEEEKRRAADALKEQQCRATEMEAESRSLMEQRERE-------QKELEQEKAGRKGLEARIQQLEEAhqaetealRHEL 783
Cdd:pfam01576  318 QQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelTEQLEQAKRNKANLEKAKQALESE--------NAEL 389

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   784 AEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGE---KTGQEVQEEAVEIHSEGQPGQQQSQ 860
Cdd:pfam01576  390 QAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSElesVSSLLNEAEGKNIKLSKDVSSLESQ 469

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   861 LAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKM-------AATNKEVACLKTLV--LKAGEQQETASLELLKEPPRA 931
Cdd:pfam01576  470 LQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLeeeeeakRNVERQLSTLQAQLsdMKKKLEEDAGTLEALEEGKKR 549

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   932 ANRASDQLGEQqgrpFSSTHAAVKAMEREAEQMGGELE----------RLRAALIKSQGQQQEERGQQEREVARLTQERG 1001
Cdd:pfam01576  550 LQRELEALTQQ----LEEKAAAYDKLEKTKNRLQQELDdllvdldhqrQLVSNLEKKQKKFDQMLAEEKAISARYAEERD 625

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1002 QAQADlAQEKAAKAELEMRLQNTLNEQRVEF----AALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQL 1077
Cdd:pfam01576  626 RAEAE-AREKETRALSLARALEEALEAKEELertnKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704


                   ....
gi 254675300  1078 KIQL 1081
Cdd:pfam01576  705 EDEL 708
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1375-1702 2.10e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 53.14  E-value: 2.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1375 KRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGER- 1453
Cdd:PRK03918  182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKi 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1454 ANLGRQFLEVELD-QAREKYVQELAAVRTDAETH--LAEMRQEAQSTSRELEVMTAKYEgAKVKVLEERQrfqEERQKLT 1530
Cdd:PRK03918  262 RELEERIEELKKEiEELEEKVKELKELKEKAEEYikLSEFYEEYLDELREIEKRLSRLE-EEINGIEERI---KELEEKE 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1531 AQVEELSKKLTEHDQASKVQQQKLKAFQaqrgesqqEVQRLQTQLNELQAQLSQKEqaAEHYKLQMEKAKThydAKKQQN 1610
Cdd:PRK03918  338 ERLEELKKKLKELEKRLEELEERHELYE--------EAKAKKEELERLKKRLTGLT--PEKLEKELEELEK---AKEEIE 404

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1611 QKLQEQLQDLEELQKENKELRSEAERL----------GRELQQaglktKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLG 1680
Cdd:PRK03918  405 EEISKITARIGELKKEIKELKKAIEELkkakgkcpvcGRELTE-----EHRKELLEEYTAELKRIEKELKEIEEKERKLR 479

                         330       340
                  ....*....|....*....|..
gi 254675300 1681 KFQVATDALKSREPQVKPQLDL 1702
Cdd:PRK03918  480 KELRELEKVLKKESELIKLKEL 501
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1146-1676 2.19e-06

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 53.26  E-value: 2.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1146 LKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQalrakaqdhsKAEEEWKAQVARGQQEAERKSSLISS 1225
Cdd:pfam01576  196 LKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA----------KKEEELQAALARLEEETAQKNNALKK 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1226 LEEevsiLNRQVLEKEgESKELKRLVVAESEKSQK-LEERLRLLQVE---TASNSARAAERSSALREEVQSLREEVEKQR 1301
Cdd:pfam01576  266 IRE----LEAQISELQ-EDLESERAARNKAEKQRRdLGEELEALKTEledTLDTTAAQQELRSKREQEVTELKKALEEET 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1302 VVSENSRQELASQAERA-EELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREE 1380
Cdd:pfam01576  341 RSHEAQLQEMRQKHTQAlEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQAR 420

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1381 LEQSKQAAGGLQAELMRAQRELGELGSLrqkIVEQERAAQQLRAEKASYAEQLsmlKKAHGLLAEENRglgERANLGRQF 1460
Cdd:pfam01576  421 LSESERQRAELAEKLSKLQSELESVSSL---LNEAEGKNIKLSKDVSSLESQL---QDTQELLQEETR---QKLNLSTRL 491

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1461 LEVELDQAR-EKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQRFQEERQKLTAQVEELSKK 1539
Cdd:pfam01576  492 RQLEDERNSlQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE----EGKKRLQRELEALTQQLEEKAAA 567

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1540 LTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ----NQKLQE 1615
Cdd:pfam01576  568 YDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRalslARALEE 647

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300  1616 QLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQL 1676
Cdd:pfam01576  648 ALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDEL 708
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1008-1542 2.31e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 2.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1008 AQEKAAKAELEMRLQNTLnEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLvkkeke 1087
Cdd:COG4913   260 LAERYAAARERLAELEYL-RAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------ 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1088 hpaggasgedasgpgtqsetagkTDAPGPELQALRAEISKLEQQCQQQQQQveglthslkseracRAEQDKALETLQGQL 1167
Cdd:COG4913   333 -----------------------RGNGGDRLEQLEREIERLERELEERERR--------------RARLEALLAALGLPL 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1168 EEKARELGHNQAASASAQRELQALRAKAQDhskAEEEWKAQVARGQQEAERKSSLISSLEEEVS------ILNRQVLEKE 1241
Cdd:COG4913   376 PASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASLERRKSniparlLALRDALAEA 452

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1242 -----------GESKELK-------------------RLVVAESEKSQ--------KLEERLRLLQVETASNSARAAE-- 1281
Cdd:COG4913   453 lgldeaelpfvGELIEVRpeeerwrgaiervlggfalTLLVPPEHYAAalrwvnrlHLRGRLVYERVRTGLPDPERPRld 532

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1282 ----------RSSALREEVQSL----------------------------------------REEVEKQRVVSENSRQEL 1311
Cdd:COG4913   533 pdslagkldfKPHPFRAWLEAElgrrfdyvcvdspeelrrhpraitragqvkgngtrhekddRRRIRSRYVLGFDNRAKL 612

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1312 ASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALvsellpakhlcqqlqaeqaaaekrfrEELEQSKQAAGGL 1391
Cdd:COG4913   613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRL--------------------------AEYSWDEIDVASA 666

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1392 QAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEEnrglgeranlgRQFLEVELDQAREK 1471
Cdd:COG4913   667 EREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE-----------LEQAEEELDELQDR 735

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300 1472 YVQELAAVRTDAETHLAEMRQEAQSTSRELEVmtakyegakvkvleeRQRFQEERQKLTAQVEELSKKLTE 1542
Cdd:COG4913   736 LEAAEDLARLELRALLEERFAAALGDAVEREL---------------RENLEERIDALRARLNRAEEELER 791
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 653-1676 2.38e-06

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 52.87  E-value: 2.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   653 IEASHQEQRQVQARVTELEAQLKAEQQKTTErekVVQEKAQLQEQLRALEESLKitkgslEEEKRRAADALKEQQCRATE 732
Cdd:pfam01576    7 MQAKEEELQKVKERQQKAESELKELEKKHQQ---LCEEKNALQEQLQAETELCA------EAEEMRARLAARKQELEEIL 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   733 MEAESRslMEQREREQKELEQEKagrKGLEARIQQLEEaHQAETEALRHELaeatasqHRAESECERLIREVESRQKRFE 812
Cdd:pfam01576   78 HELESR--LEEEEERSQQLQNEK---KKMQQHIQDLEE-QLDEEEAARQKL-------QLEKVTTEAKIKKLEEDILLLE 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   813 ARQQEEARYGAMFQEQLmalkGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:pfam01576  145 DQNSKLSKERKLLEERI----SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL 220

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   893 QEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASdqlgeqqgrpfssthaAVKAMEREAEQMGGELERLR 972
Cdd:pfam01576  221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALK----------------KIRELEAQISELQEDLESER 284

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   973 AALIKSQgqqqeergqqerevarltqergQAQADLAQE-KAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQ 1051
Cdd:pfam01576  285 AARNKAE----------------------KQRRDLGEElEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1052 ELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGpgtqsetagktdapgpELQALRAEISKLEQQ 1131
Cdd:pfam01576  343 HEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA----------------ELRTLQQAKQDSEHK 406

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1132 CQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQD-HSKAEEEWKAQVA 1210
Cdd:pfam01576  407 RKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDtQELLQEETRQKLN 486

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1211 ---RGQQEAERKSSLISSLEEEVSI---LNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSS 1284
Cdd:pfam01576  487 lstRLRQLEDERNSLQEQLEEEEEAkrnVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1285 A---LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQ---ELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP 1358
Cdd:pfam01576  567 AydkLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaEEKAISARYAEERDRAEAEAREKETRALSLARALE 646

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1359 AKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQREL-GELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLK 1437
Cdd:pfam01576  647 EALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALeQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALK 726

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1438 KAH--GLLAEENRGLGERANLGRQF--LEVELDQAREKYVQELAAvRTDAETHLAEMRQ--EAQSTSRELEVMTAKYEGA 1511
Cdd:pfam01576  727 AQFerDLQARDEQGEEKRRQLVKQVreLEAELEDERKQRAQAVAA-KKKLELDLKELEAqiDAANKGREEAVKQLKKLQA 805

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1512 KVKVLE-ERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLN-------------- 1576
Cdd:pfam01576  806 QMKDLQrELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIAsgasgksalqdekr 885

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1577 ELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQqagLKTKEAEQTCR 1656
Cdd:pfam01576  886 RLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELK---AKLQEMEGTVK 962

                         1050      1060
                   ....*....|....*....|.
gi 254675300  1657 -HLTAQVRSLEAQVAHADQQL 1676
Cdd:pfam01576  963 sKFKSSIAALEAKIAQLEEQL 983
mukB PRK04863
chromosome partition protein MukB;
1404-1681 2.80e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 53.04  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1404 ELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLaeeNRGLGERANLGRQFLEVELDQARE---------KYVQ 1474
Cdd:PRK04863  838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSAL---NRLLPRLNLLADETLADRVEEIREqldeaeeakRFVQ 914

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1475 ELAAVRTDAETHLAEMRQEAQstsrELEVMTAKYEGAkvkvlEERQRFQEERQKLTAQV---------EELSKKLTEHDQ 1545
Cdd:PRK04863  915 QHGNALAQLEPIVSVLQSDPE----QFEQLKQDYQQA-----QQTQRDAKQQAFALTEVvqrrahfsyEDAAEMLAKNSD 985

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1546 ASKVQQQKLKAFQAQRgesqqevQRLQTQLNELQAQLSQKEQAaehyklqMEKAKTHYDAKKQQNQKLQEQLQDLEELQK 1625
Cdd:PRK04863  986 LNEKLRQRLEQAEQER-------TRAREQLRQAQAQLAQYNQV-------LASLKSSYDAKRQMLQELKQELQDLGVPAD 1051

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300 1626 ENKELRSEAERlgRELQQAglkTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGK 1681
Cdd:PRK04863 1052 SGAEERARARR--DELHAR---LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLER 1102
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1287-1668 4.39e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 52.26  E-value: 4.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1287 REEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKawqekffQKEQALSALQLEHTSTQAlvsellpakHLcqql 1366
Cdd:COG3096   277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELE-------ELSARESDLEQDYQAASD---------HL---- 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1367 qaeqaaaekrfreeleQSKQAAGGLQAELMRAQRELGELGS--LRQKIVEQERAAQQLRAEKASYAEQLSmLKKAHGLLA 1444
Cdd:COG3096   337 ----------------NLVQTALRQQEKIERYQEDLEELTErlEEQEEVVEEAAEQLAEAEARLEAAEEE-VDSLKSQLA 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1445 EENRGLGE---RANLGRQFLEVeLDQAREkyVQELAAVRTD-AETHLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQ 1520
Cdd:COG3096   400 DYQQALDVqqtRAIQYQQAVQA-LEKARA--LCGLPDLTPEnAEDYLAAFRAKEQQATEEVLELEQKLSVAD----AARR 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1521 RFQEERQKLTAQVEElskklTEHDQASKVQQQKLKAFQAQRGESQQEVQrLQTQLNELQAQLSQKEQAAEhyklqmekak 1600
Cdd:COG3096   473 QFEKAYELVCKIAGE-----VERSQAWQTARELLRRYRSQQALAQRLQQ-LRAQLAELEQRLRQQQNAER---------- 536

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300 1601 thydAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQ 1668
Cdd:COG3096   537 ----LLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
504-898 4.47e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 51.69  E-value: 4.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHaQQLAIVA 583
Cdd:COG4717    47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-EKLEKLL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  584 EAREAsLRERDTARQQLETVE------KEKDAKLESLQQQLQAANDARDNAQTSVTQA-QQEKAELSQKIGELHACIEAS 656
Cdd:COG4717   126 QLLPL-YQELEALEAELAELPerleelEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEEL 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  657 HQEQRQVQARVTELEAQLKAEQQKTTEREKvVQEKAQLQEQLRALEESLKI---------TKGSLEEEKRRAADALKEQQ 727
Cdd:COG4717   205 QQRLAELEEELEEAQEELEELEEELEQLEN-ELEAAALEERLKEARLLLLIaaallallgLGGSLLSLILTIAGVLFLVL 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  728 CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAE------------ATASQHRAES 795
Cdd:COG4717   284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLElldrieelqellREAEELEEEL 363

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  796 ECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKtgQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQV 875
Cdd:COG4717   364 QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEEL--EELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441

                         410       420
                  ....*....|....*....|...
gi 254675300  876 QEKEVRAQKLVDDLSALQEKMAA 898
Cdd:COG4717   442 EELEEELEELREELAELEAELEQ 464
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1514-1692 5.12e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.92  E-value: 5.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1514 KVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ-----KEQA 1588
Cdd:COG4942    31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAqkeelAELL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1589 AEHYKL----------------QMEKAKTHYDAKKQQNQKLQEQLQ-DLEELQKENKELRSEAERLGRELQQAGLKTKEA 1651
Cdd:COG4942   111 RALYRLgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRaDLAELAALRAELEAERAELEALLAELEEERAAL 190

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 254675300 1652 EQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDALKSR 1692
Cdd:COG4942   191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1531-1679 5.77e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 51.31  E-value: 5.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1531 AQVEELSKKLtehdQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKL--QMEKAKTHYDAKKQ 1608
Cdd:COG4717    71 KELKELEEEL----KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPE 146

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1609 QNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTK-EAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG4717   147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEA 218
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 628-845 5.84e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.92  E-value: 5.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  628 AQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKI 707
Cdd:COG4942    18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE---QELAALEAELAELEKEIAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  708 TKGSLEEEKRRAADALKEQQ--------------CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQ 773
Cdd:COG4942    95 LRAELEAQKEELAELLRALYrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-R 173

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300  774 AETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEA 845
Cdd:COG4942   174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1140-1679 8.31e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 51.12  E-value: 8.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1140 EGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARgQQEAERK 1219
Cdd:TIGR00618  197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR-IEELRAQ 275

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1220 SSLISSLEEEVSiLNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEK 1299
Cdd:TIGR00618  276 EAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1300 QRVVSENSRQEL-ASQAERAEELGQELKAWQEK---FFQKEQALSALQLEHTSTQALVSEL----------LPAKHLCQQ 1365
Cdd:TIGR00618  355 IHIRDAHEVATSiREISCQQHTLTQHIHTLQQQkttLTQKLQSLCKELDILQREQATIDTRtsafrdlqgqLAHAKKQQE 434

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1366 LQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKAS-YAEQLSMLKKAHGLLA 1444
Cdd:TIGR00618  435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLeLQEEPCPLCGSCIHPN 514

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1445 EENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAET-HLAEMRQEAQSTSRELEVMTAKYEGAKvKVLEERQRFQ 1523
Cdd:TIGR00618  515 PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERkQRASLKEQMQEIQQSFSILTQCDNRSK-EDIPNLQNIT 593

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1524 EERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQ------TQLNELQAQLSQKEQAAEHYKLQME 1597
Cdd:TIGR00618  594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELAlkltalHALQLTLTQERVREHALSIRVLPKE 673

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1598 KAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRelqqaglKTKEAEQTCRHLTAQVRSLEAQVAHADQQLR 1677
Cdd:TIGR00618  674 LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE-------YDREFNEIENASSSLGSDLAAREDALNQSLK 746


                   ..
gi 254675300  1678 DL 1679
Cdd:TIGR00618  747 EL 748
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1474-1724 8.48e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.19  E-value: 8.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1474 QELAAVRTDAEtHLAEMRQEAQSTSRELEVMTAKYEGAkvkvLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQK 1553
Cdd:PRK02224  213 SELAELDEEIE-RYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVRDLRER 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1554 LKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEElqkENKELRSE 1633
Cdd:PRK02224  288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE---RAEELREE 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1634 AERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDALKSREPQVKPQLDLSIDSLDLSLEE 1713
Cdd:PRK02224  365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444

                         250
                  ....*....|.
gi 254675300 1714 GTPCSVASKLP 1724
Cdd:PRK02224  445 AEALLEAGKCP 455
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
136-717 8.77e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.19  E-value: 8.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  136 DHEESLNLTEDLESFLEKVPYTHASTLSE--ELSPPSHQTKRKIRFLEiQRIASSSSENNFLSGSPSSpmgdilqtpqfq 213
Cdd:PRK02224  245 EHEERREELETLEAEIEDLRETIAETEREreELAEEVRDLRERLEELE-EERDDLLAEAGLDDADAEA------------ 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  214 mrrLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAllnekqaassqepSELEELRGKNESLTVRLHET 293
Cdd:PRK02224  312 ---VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE-------------ERAEELREEAAELESELEEA 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  294 LKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEhskasqewaekqarlENELSTALQDKKC 373
Cdd:PRK02224  376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER---------------EAELEATLRTARE 440

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  374 LEEKNEILqgklsqledqatrLQESPAPEKGEVLGDALQLDTL---KQEAAKLATDNTQLQTRVETLE--CERGKQEAQL 448
Cdd:PRK02224  441 RVEEAEAL-------------LEAGKCPECGQPVEGSPHVETIeedRERVEELEAELEDLEEEVEEVEerLERAEDLVEA 507

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  449 LAERSRFEDEKQQLASLIADLQssvsnlsqakeeleqasqaqgaqltaqltsmtglnATLQQRDQELASLKEQAKKEQAQ 528
Cdd:PRK02224  508 EDRIERLEERREDLEELIAERR-----------------------------------ETIEEKRERAEELRERAAELEAE 552

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  529 mlqtMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRqDHAQQLAIVAEAREA--SLRERDTARQQLETVEKE 606
Cdd:PRK02224  553 ----AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEieRLREKREALAELNDERRE 627

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  607 KDAKLESLQQQLQAANDArdnaqTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKaEQQKTTEREK 686
Cdd:PRK02224  628 RLAEKRERKRELEAEFDE-----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE-ELEELRERRE 701

                         570       580       590
                  ....*....|....*....|....*....|.
gi 254675300  687 VVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:PRK02224  702 ALENRVEALEALYDEAEELESMYGDLRAELR 732
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 521-814 9.06e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 51.11  E-value: 9.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  521 QAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEA----AKEQEATRQ----DHAQQ--------LAIVAE 584
Cdd:COG3096   289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlNLVQTALRQqekiERYQEdleelterLEEQEE 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  585 AREASLRERDTARQQLETVEKEKDakleSLQQQLQAANDARDNAQTSVTQAQQEKaelsQKIGELHACIEASHQEQRQVQ 664
Cdd:COG3096   369 VVEEAAEQLAEAEARLEAAEEEVD----SLKSQLADYQQALDVQQTRAIQYQQAV----QALEKARALCGLPDLTPENAE 440

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  665 ARVTELEAQlkaEQQKTTEREKVVQEKAQLQEQLRALEESLK-ITKGSLEEEKRRAADALKEQQCRATEMEAESRSL--- 740
Cdd:COG3096   441 DYLAAFRAK---EQQATEEVLELEQKLSVADAARRQFEKAYElVCKIAGEVERSQAWQTARELLRRYRSQQALAQRLqql 517

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  741 ------MEQREREQ-------KELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQhraeSECERLIREVESR 807
Cdd:COG3096   518 raqlaeLEQRLRQQqnaerllEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR----SELRQQLEQLRAR 593


                  ....*..
gi 254675300  808 QKRFEAR 814
Cdd:COG3096   594 IKELAAR 600
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 260-907 1.06e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 50.94  E-value: 1.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   260 ALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAF 339
Cdd:pfam01576  447 SLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQL 526

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   340 NDL---IEEHSKASQEWAEKQARLENELSTALQdkkCLEEKNEilqgKLSQLEDQATRLQEspapekgEVLGDALQLDTL 416
Cdd:pfam01576  527 SDMkkkLEEDAGTLEALEEGKKRLQRELEALTQ---QLEEKAA----AYDKLEKTKNRLQQ-------ELDDLLVDLDHQ 592

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   417 KQeaakLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTA 496
Cdd:pfam01576  593 RQ----LVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMED 668

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   497 QLTSMTGLNATLQqrdqELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHA 576
Cdd:pfam01576  669 LVSSKDDVGKNVH----ELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKR 744

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   577 QQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEAS 656
Cdd:pfam01576  745 RQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEI 824

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   657 HQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAAD-------ALKEQQCR 729
Cdd:pfam01576  825 LAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEAriaqleeELEEEQSN 904

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   730 ATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQaETEALRHELAEATASQHRA-----ESECERLIREV 804
Cdd:pfam01576  905 TELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNK-ELKAKLQEMEGTVKSKFKSsiaalEAKIAQLEEQL 983

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   805 ESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:pfam01576  984 EQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAE--------KGNSRMKQLKRQLEEAEEEASRANAARRK 1055

                          650       660
                   ....*....|....*....|...
gi 254675300   885 LVDDLSALQEKMAATNKEVACLK 907
Cdd:pfam01576 1056 LQRELDDATESNESMNREVSTLK 1078
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1189-1321 1.09e-05

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 50.63  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1189 QALRaKAQDHSKAEEEWKAQVARGQQEAERkssliSSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLL 1268
Cdd:COG2433   380 EALE-ELIEKELPEEEPEAEREKEHEEREL-----TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA 453

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675300 1269 QVEtASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELasqaERAEEL 1321
Cdd:COG2433   454 RSE-ERREIRKDREISRLDREIERLERELEEERERIEELKRKL----ERLKEL 501
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1153-1669 1.12e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 50.81  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1153 RAEQDKALETLQGQLEEK-ARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVS 1231
Cdd:PRK02224  182 LSDQRGSLDQLKAQIEEKeEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1232 ILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSA---RAAERSSALREEVQSLREEVEKQRVVSENSR 1308
Cdd:PRK02224  262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAdaeAVEARREELEDRDEELRDRLEECRVAAQAHN 341

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1309 QELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqqlqaeqaaaekrfREELEQSKQAA 1388
Cdd:PRK02224  342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL---------------------EEEIEELRERF 400

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1389 GGLQAELMRAQRELGELGSLRQKIVEQERaaqQLRAEKASYAEQLsmlkkahgllaEENRGLGERANLGRQFLEVE---- 1464
Cdd:PRK02224  401 GDAPVDLGNAEDFLEELREERDELREREA---ELEATLRTARERV-----------EEAEALLEAGKCPECGQPVEgsph 466

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1465 ---LDQAREKyVQELAAVRTDAETHLAEMRQ------EAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLtaqvEE 1535
Cdd:PRK02224  467 vetIEEDRER-VEELEAELEDLEEEVEEVEErleraeDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA----EE 541

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1536 LSKKLTEHDQASkvqQQKLKAFQAQRGESQQEVQRLQTqlnelqaqlsqkeqaaehyklqmekakthYDAKKQQNQKLQE 1615
Cdd:PRK02224  542 LRERAAELEAEA---EEKREAAAEAEEEAEEAREEVAE-----------------------------LNSKLAELKERIE 589

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 254675300 1616 QLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQV 1669
Cdd:PRK02224  590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
1557-1679 1.12e-05

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 49.66  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1557 FQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhYKLQMEKAKTHYDAKKQQ---NQKLQEQ----LQDLEELQKENKE 1629
Cdd:COG1566    81 LQAALAQAEAQLAAAEAQLARLEAELGAEAEIAA-AEAQLAAAQAQLDLAQRElerYQALYKKgavsQQELDEARAALDA 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300 1630 LRSEAERLGRELQQAGLKTKEAEQTcRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG1566   160 AQAQLEAAQAQLAQAQAGLREEEEL-AAAQAQVAQAEAALAQAELNLART 208
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 211-764 1.12e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 50.94  E-value: 1.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLA----LLNEKQAASSQEPSELEE-------L 279
Cdd:pfam01576  102 QQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSkerkLLEERISEFTSNLAEEEEkakslskL 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   280 RGKNESLTVRLHETLKQC----QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQ----LQGAFNDLIEEHSKASQ 351
Cdd:pfam01576  182 KNKHEAMISDLEERLKKEekgrQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKkeeeLQAALARLEEETAQKNN 261

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   352 ----------EWAEKQARLENEL---STALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVlgdALQLDTLKQ 418
Cdd:pfam01576  262 alkkireleaQISELQEDLESERaarNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEV---TELKKALEE 338

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   419 EAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLtaql 498
Cdd:pfam01576  339 ETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQL---- 414

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   499 tsmtglnatlqqrdQELASLKEQAKKEQaqmlqtmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATrqdhAQQ 578
Cdd:pfam01576  415 --------------QELQARLSESERQR-------AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----ESQ 469

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   579 LAIVAEAREASLRERDTARQQLETVEKEKDakleSLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQ 658
Cdd:pfam01576  470 LQDTQELLQEETRQKLNLSTRLRQLEDERN----SLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEE 545

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   659 EQRQVQarvTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRAL---EESLKITKGSLEEEKRRAADALKEQQ-CRATEME 734
Cdd:pfam01576  546 GKKRLQ---RELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvdLDHQRQLVSNLEKKQKKFDQMLAEEKaISARYAE 622

                          570       580       590
                   ....*....|....*....|....*....|
gi 254675300   735 AESRSLMEQREREQKELEQEKAGRKGLEAR 764
Cdd:pfam01576  623 ERDRAEAEAREKETRALSLARALEEALEAK 652
HpsJ_fam NF038305
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ...
 503-619 1.18e-05

HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.


Pssm-ID: 468465 [Multi-domain]  Cd Length: 230  Bit Score: 48.73  E-value: 1.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  503 GLNATLQQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGlRQQVEQLSSSLKLKEQQLEEAAKEQEaTRQDHAQQLAIV 582
Cdd:NF038305   98 HLNNTRRLSTQALQQINQQAGQQETQ-LQQQLNQLQAQTS-PQQLNQLLKSEQKQGQALASGQLPEE-QKEQLQQFKSNP 174

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 254675300  583 AEAREASLRERDTARQQLETVEKEkdAKLESLQQQLQ 619
Cdd:NF038305  175 QALDKFLAQQLTQIRTQAEEAEKQ--ARLEALKSSLR 209
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 685-1474 1.47e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 50.50  E-value: 1.47e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   685 EKVVQEKAQlqeQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEkagRKGLEAR 764
Cdd:pfam15921   77 ERVLEEYSH---QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQNT 150

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   765 IQQLEEAHQAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEarqqEEARYGAMFQEQLMALKGEKTGQEVQEE 844
Cdd:pfam15921  151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEIRSILVDFE----EASGKKIYEHDSMSTMHFRSLGSAISKI 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   845 AVEIHSE-----GQPGQQQSQLAQLHASLAKAIQQV-QEKEVRAQKLVDD----LSALQEKMAATNKEVACLKTlvlkag 914
Cdd:pfam15921  226 LRELDTEisylkGRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEheveITGLTEKASSARSQANSIQS------ 299

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   915 eqqetaSLELLKEPPRAANrasdQLGEQQGRPFSSTHAAVKAMEREAEQM-GGELERLRAALIKSQgqqqeergqqerev 993
Cdd:pfam15921  300 ------QLEIIQEQARNQN----SMYMRQLSDLESTVSQLRSELREAKRMyEDKIEELEKQLVLAN-------------- 355

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   994 ARLTQERGQaQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQT 1073
Cdd:pfam15921  356 SELTEARTE-RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAL 434

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1074 LEQLKIQlVKKEKEHPAGGASGEDASGPGTQSETAgKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACR 1153
Cdd:pfam15921  435 LKAMKSE-CQGQMERQMAAIQGKNESLEKVSSLTA-QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI 512

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1154 AEQDKALETLQGQLEEKARELGHNQAAS---ASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEV 1230
Cdd:pfam15921  513 EATNAEITKLRSRVDLKLQELQHLKNEGdhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK 592

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1231 SILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREevqsLREEVEKQRVVSENSRQE 1310
Cdd:pfam15921  593 AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD----IKQERDQLLNEVKTSRNE 668

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1311 LASQAERAEELGQELKAWQEKFfqkEQALSALQLEHTSTQalvSELlpakhlcqqlqAEQAAAEKRFREELEQSKQAAGG 1390
Cdd:pfam15921  669 LNSLSEDYEVLKRNFRNKSEEM---ETTTNKLKMQLKSAQ---SEL-----------EQTRNTLKSMEGSDGHAMKVAMG 731

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1391 LQAELMrAQRelGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLA-EENRGLGERANLGRQ---------F 1460
Cdd:pfam15921  732 MQKQIT-AKR--GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAtEKNKMAGELEVLRSQerrlkekvaN 808

                          810
                   ....*....|....
gi 254675300  1461 LEVELDQAREKYVQ 1474
Cdd:pfam15921  809 MEVALDKASLQFAE 822
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
385-803 1.51e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 50.15  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  385 LSQLEDQATRLQESPApEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLE---------CERGKQEAQLLAERSRF 455
Cdd:COG4717    70 LKELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKLEkllqllplyQELEALEAELAELPERL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  456 EDEKQQLASlIADLQSSVSNLSQAKEELEQASQAQGAQLT-AQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQ 534
Cdd:COG4717   149 EELEERLEE-LRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  535 -----EQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA 609
Cdd:COG4717   228 eleqlENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  610 KLESLQQQLQAA--NDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKV 687
Cdd:COG4717   308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEEL 387

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  688 VQeKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQcrATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQ 767
Cdd:COG4717   388 RA-ALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEEELEELEEELEELREELAELEAELEQ 464

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 254675300  768 LEEAhqaetealrHELAEATASQHRAESECERLIRE 803
Cdd:COG4717   465 LEED---------GELAELLQELEELKAELRELAEE 491
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
 412-816 1.51e-05

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 50.18  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASL---------IADLQSSVSNLSQAKEE 482
Cdd:PRK10246  427 RLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVkticeqearIKDLEAQRAQLQAGQPC 506

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  483 LEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQ---MLQTMQEQEQAAQGLRQQVEQLSS------- 552
Cdd:PRK10246  507 PLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQldaLTKQLQRDESEAQSLRQEEQALTQqwqavca 586

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  553 SLKLKEQQLEEAAKEQEAtRQDHAQQLAIVAEARE------ASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND--- 623
Cdd:PRK10246  587 SLNITLQPQDDIQPWLDA-QEEHERQLRLLSQRHElqgqiaAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEeas 665

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  624 ---ARDNAQTSVTQAQQEKAELSQKIGELHACIE--------------ASHQEQRQVQARVTELEAQLKAEQQKTTerek 686
Cdd:PRK10246  666 wlaTRQQEAQSWQQRQNELTALQNRIQQLTPLLEtlpqsddlphseetVALDNWRQVHEQCLSLHSQLQTLQQQDV---- 741

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  687 vvQEKAQLQEQLRALEESLkitKGSLEEEKRRAADALkeqqcrateMEAESRSLMEQRereQKELEQEKAGRKGLEARIQ 766
Cdd:PRK10246  742 --LEAQRLQKAQAQFDTAL---QASVFDDQQAFLAAL---------LDEETLTQLEQL---KQNLENQRQQAQTLVTQTA 804

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300  767 QLEEAHQAETEALRHELAEATASQHRAESECERLiREVESRQKrfEARQQ 816
Cdd:PRK10246  805 QALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQL-RENTTRQG--EIRQQ 851
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 856-1087 1.55e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  856 QQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEvaclktlvLKAGEQQETASLELLKEPPRAANRA 935
Cdd:COG4942    24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR--------IRALEQELAALEAELAELEKEIAEL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  936 SDQLGEQQgrpfssthAAVKAMEREAEQMGgeleRLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKA 1015
Cdd:COG4942    96 RAELEAQK--------EELAELLRALYRLG----RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1016 ELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKE 1087
Cdd:COG4942   164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1519-1690 1.59e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 50.02  E-value: 1.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1519 RQRFQEERQKLTAQVEELSKKLTEHDQaskvqQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEK 1598
Cdd:COG3206   177 LEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1599 AKTH---------YDAKKQQNQKLQEQLQDLEELQKEN----KELRSEAERLGRELQQAGLKTK-EAEQTCRHLTAQVRS 1664
Cdd:COG3206   252 GPDAlpellqspvIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQEAQRILaSLEAELEALQAREAS 331

                         170       180
                  ....*....|....*....|....*.
gi 254675300 1665 LEAQVAHADQQLRDLGKFQVATDALK 1690
Cdd:COG3206   332 LQAQLAQLEARLAELPELEAELRRLE 357
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1158-1349 1.69e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.30  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1158 KALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQ--VARGQQEAERKSSLISSLEE---EVSI 1232
Cdd:COG4913   610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAELERLDAssdDLAA 689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1233 LNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEvqsLREEVEKQRvvsensRQELA 1312
Cdd:COG4913   690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE---LRALLEERF------AAALG 760

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 254675300 1313 SQAER--AEELGQELKAWQEKFFQKEQALSALQLEHTST 1349
Cdd:COG4913   761 DAVERelRENLEERIDALRARLNRAEEELERAMRAFNRE 799
PRK12704 PRK12704
phosphodiesterase; Provisional
 558-756 1.74e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 49.78  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  558 EQQLEEAAKEQEATRQDhaqqlaIVAEAREaslrERDTARQQLETVEKEKDAKLESLQQQLqaandardnaqtsvtqaQQ 637
Cdd:PRK12704   41 KRILEEAKKEAEAIKKE------ALLEAKE----EIHKLRNEFEKELRERRNELQKLEKRL-----------------LQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  638 EKAELSQKIGELhacieashqEQRqvQARVTELEAQLKAEQQKTTEREKVVQEKaqLQEQLRALEESLKITKgslEEEKR 717
Cdd:PRK12704   94 KEENLDRKLELL---------EKR--EEELEKKEKELEQKQQELEKKEEELEEL--IEEQLQELERISGLTA---EEAKE 157

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 254675300  718 RAADALKEqqcratEMEAESRSLMEQREREQKELEQEKA 756
Cdd:PRK12704  158 ILLEKVEE------EARHEAAVLIKEIEEEAKEEADKKA 190
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1008-1679 1.78e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.30  E-value: 1.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1008 AQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTD-----QELAKLRGQEAAQRTELKELQQTLEQLKIQLV 1082
Cdd:COG4913   240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELARLEAELERLEARLD 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1083 KKEKEHpaggasgedasgpgtQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQveglthslkseracRAEQDKALET 1162
Cdd:COG4913   320 ALREEL---------------DELEAQIRGNGGDRLEQLEREIERLERELEERERR--------------RARLEALLAA 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1163 LQGQLEEKARELGHNQAASASAQRELQALRAKAQDhskAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLekeg 1242
Cdd:COG4913   371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL---- 443

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1243 eskELKRLVVAESEKSqklEERLR----LLQVETASNSAR-AAERssALREEVQSL--REEVEKQrvvsensrqelASQA 1315
Cdd:COG4913   444 ---ALRDALAEALGLD---EAELPfvgeLIEVRPEEERWRgAIER--VLGGFALTLlvPPEHYAA-----------ALRW 504

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1316 ERAEELGQELkawqeKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFR--EELEQSKQAAGGLQA 1393
Cdd:COG4913   505 VNRLHLRGRL-----VYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVcvDSPEELRRHPRAITR 579

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1394 E-LMRAQRELGELG-------------SLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLgrQ 1459
Cdd:COG4913   580 AgQVKGNGTRHEKDdrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEY--S 657

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1460 FLEVELDQAREKYV---QELAAVRTDAEThLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQRFQEERQKLTAQVEEL 1536
Cdd:COG4913   658 WDEIDVASAEREIAeleAELERLDASSDD-LAALEEQLEELEAELEELEEELDELK----GEIGRLEKELEQAEEELDEL 732

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1537 SKKLTEHDQASKVQQQKL--KAFQAQRGE--SQQEVQRLQTQLNELQAQLSQKEQAAEhykLQMEKAKTHYDAKKQQnqk 1612
Cdd:COG4913   733 QDRLEAAEDLARLELRALleERFAAALGDavERELRENLEERIDALRARLNRAEEELE---RAMRAFNREWPAETAD--- 806

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300 1613 LQEQLQDLEELQKENKELrsEAERLGRELQQagLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG4913   807 LDADLESLPEYLALLDRL--EEDGLPEYEER--FKELLNENSIEFVADLLSKLRRAIREIKERIDPL 869
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1033-1666 1.85e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 49.97  E-value: 1.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1033 AALQEALAHALTEKEGTDQELAKLRgqeaaQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAgktd 1112
Cdd:TIGR00618  222 QVLEKELKHLREALQQTQQSHAYLT-----QKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKA---- 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1113 APGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAasasaQRELQALR 1192
Cdd:TIGR00618  293 APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD-----AHEVATSI 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1193 AKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:TIGR00618  368 REISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI 447

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1273 ASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQAL 1352
Cdd:TIGR00618  448 TCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL-LELQEEPCPLCGSCIHPNPARQDIDNPGPL 526

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1353 VSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQaaggLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQ 1432
Cdd:TIGR00618  527 TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS----LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1433 LSMLKKAhglLAEENRGLGERAN--LGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEG 1510
Cdd:TIGR00618  603 LSEAEDM---LACEQHALLRKLQpeQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQ 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1511 AKVKVLEERQRF-----------QEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQ-TQLNEL 1578
Cdd:TIGR00618  680 LALQKMQSEKEQltywkemlaqcQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQArTVLKAR 759

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1579 ---QAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLE-----ELQKENKELRSEAERLGRELQQAGLKTKE 1650
Cdd:TIGR00618  760 teaHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEaeigqEIPSDEDILNLQCETLVQEEEQFLSRLEE 839

                          650
                   ....*....|....*.
gi 254675300  1651 AEQTCRHLTAQVRSLE 1666
Cdd:TIGR00618  840 KSATLGEITHQLLKYE 855
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 412-640 2.19e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLlaerSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4942    28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI----AALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  492 AQLTAQLTSMtglnATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4942   104 EELAELLRAL----YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  572 RQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKA 640
Cdd:COG4942   180 LAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
630-796 2.31e-05

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 49.10  E-value: 2.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  630 TSVTQAQQEKAELSQKIGELHacIEASHQEQRQVQA-RVTELEAQLKAEQQKttEREKVVQEKAQLQEQLRAL-EESLKI 707
Cdd:COG2268   195 AEIIRDARIAEAEAERETEIA--IAQANREAEEAELeQEREIETARIAEAEA--ELAKKKAEERREAETARAEaEAAYEI 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  708 TkgslEEEKRRAADALKEQQCRATEMEAEsrslmeQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHE-LAEA 786
Cdd:COG2268   271 A----EANAEREVQRQLEIAEREREIELQ------EKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKgLAEA 340

                         170
                  ....*....|
gi 254675300  787 TASQHRAESE 796
Cdd:COG2268   341 EGKRALAEAW 350
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 354-570 2.33e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 2.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  354 AEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTR 433
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  434 VETLECERGKQ--EAQLLAERSRFE-----DEKQQLASLIADLQSSVSNLSQAKEELEQASQ---AQGAQLTAQLTSMTG 503
Cdd:COG4942    99 LEAQKEELAELlrALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAelaALRAELEAERAELEA 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300  504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEA 570
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 572-1425 2.45e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 49.57  E-value: 2.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLES---LQQQLQAANDARDNAQTSVtqAQQEKAElsqkige 648
Cdd:COG3096   280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSAResdLEQDYQAASDHLNLVQTAL--RQQEKIE------- 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  649 lhacieashqeqrQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKITKGSLEEEKRraadALKEQQC 728
Cdd:COG3096   351 -------------RYQEDLEELTERLEEQEEVVEEAA---EQLAEAEARLEAAEEEVDSLKSQLADYQQ----ALDVQQT 410

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  729 RATEMEAESRSLmeqrEREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRH-----ELAEATASQHRAESE-CERLIR 802
Cdd:COG3096   411 RAIQYQQAVQAL----EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEleqklSVADAARRQFEKAYElVCKIAG 486

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  803 EVESRQKRFEARQQ-EEARYGAMFQEQLMALKgektgQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVR 881
Cdd:COG3096   487 EVERSQAWQTARELlRRYRSQQALAQRLQQLR-----AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAE 561

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  882 AQKLVDDLSALQEkmAATNKEVACLKTLVLKAGEQQETASlellKEPP-RAANRASDQLGEQQGRPFSSTHAAVKAMERE 960
Cdd:COG3096   562 LEAQLEELEEQAA--EAVEQRSELRQQLEQLRARIKELAA----RAPAwLAAQDALERLREQSGEALADSQEVTAAMQQL 635

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  961 aeqmggeLERLRAALIkSQGQQQEERGQQEREVARLTQERGQAQADLAQekaakaeLEMRLQNTLNEQRVEFAALQEA-- 1038
Cdd:COG3096   636 -------LEREREATV-ERDELAARKQALESQIERLSQPGGAEDPRLLA-------LAERLGGVLLSEIYDDVTLEDApy 700

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1039 -------LAHAL---------------------------------------TEKEGTDqeLAKLRGQE------------ 1060
Cdd:COG3096   701 fsalygpARHAIvvpdlsavkeqlagledcpedlyliegdpdsfddsvfdaEELEDAV--VVKLSDRQwrysrfpevplf 778

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1061 ---------AAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASgedasgPGTQSETAGKTDaPGPELQALRAEISKLEQQ 1131
Cdd:COG3096   779 graarekrlEELRAERDELAEQYAKASFDVQKLQRLHQAFSQF------VGGHLAVAFAPD-PEAELAALRQRRSELERE 851

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1132 cqqqqqqveglthsLKSERACRAEQDKALETLQGQLEEKARELGHnqaASASAQRELQALRAKAQDHSKAEEEWKAQVAR 1211
Cdd:COG3096   852 --------------LAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQ---ANLLADETLADRLEELREELDAAQEAQAFIQQ 914

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1212 GQQEAERksslissLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQ 1291
Cdd:COG3096   915 HGKALAQ-------LEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNE 987

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1292 SLREEVEkqrvvsensrqelasQAERA-EELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP-----AKHLCQQ 1365
Cdd:COG3096   988 KLRARLE---------------QAEEArREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQeleelGVQADAE 1052

                         890       900       910       920       930       940
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1366 LQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRelgELGSLRQKIVEQERAAQQLRAE 1425
Cdd:COG3096  1053 AEERARIRRDELHEELSQNRSRRSQLEKQLTRCEA---EMDSLQKRLRKAERDYKQEREQ 1109
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 313-649 2.51e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 49.58  E-value: 2.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   313 QLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQA 392
Cdd:TIGR00618  539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   393 TRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQ------------ 460
Cdd:TIGR00618  619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQsekeqltywkem 698

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   461 --QLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtglNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ 538
Cdd:TIGR00618  699 laQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAR-------EDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   539 AAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQL 618
Cdd:TIGR00618  772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851

                          330       340       350
                   ....*....|....*....|....*....|.
gi 254675300   619 QAANDARDNAQtsvtQAQQEKAELSQKIGEL 649
Cdd:TIGR00618  852 LKYEECSKQLA----QLTQEQAKIIQLSDKL 878
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 1117-1653 2.53e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.58  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:pfam02463  245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERL---RLLQVETA 1273
Cdd:pfam02463  325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKeeeLELKSEEE 404

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1274 SNSARAAERSSALREEVQSL-----------REEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSAL 1342
Cdd:pfam02463  405 KEAQLLLELARQLEDLLKEEkkeeleileeeEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1343 QLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQ---------RELGELGSLRQKIV 1413
Cdd:pfam02463  485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaistaviVEVSATADEVEERQ 564

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1414 EQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRG-LGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQ 1492
Cdd:pfam02463  565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDpILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1493 EAQS-TSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSK-KLTEHDQASKVQQQKLKAFQAQRGESQQEVQR 1570
Cdd:pfam02463  645 ESGLrKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKeEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1571 LQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKE 1650
Cdd:pfam02463  725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804


                   ...
gi 254675300  1651 AEQ 1653
Cdd:pfam02463  805 ALE 807
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 319-699 3.55e-05

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 463796 [Multi-domain]  Cd Length: 712  Bit Score: 48.90  E-value: 3.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   319 GDLSFKVREFANHLQQLQGAFNDLIEEHS-KASQEWAEKQARLENELSTAlqDKKCLEEKNEILQGKLSQLEDQATRLQ- 396
Cdd:pfam13166   88 GEESIEIQEKIAKLKKEIKDHEEKLDAAEaNLQKLDKEKEKLEADFLDEC--WKKIKRKKNSALSEALNGFKYEANFKSr 165

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   397 -----ESPAPEKGEVLGDAlqldtlkQEAAKLATDNTQLQTRVETLECerGKQEAQLLAERSRFEDEKQQLASLIADLQS 471
Cdd:pfam13166  166 llreiEKDNFNAGVLLSDE-------DRKAALATVFSDNKPEIAPLTF--NVIDFDALEKAEILIQKVIGKSSAIEELIK 236

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   472 SVSNLSQAKEELEQASQAQG----------AQLTAQLTSMTGLNATLQQRD-QELASLKEQAKKEQAQMLQTMQEQEQAA 540
Cdd:pfam13166  237 NPDLADWVEQGLELHKAHLDtcpfcgqplpAERKAALEAHFDDEFTEFQNRlQKLIEKVESAISSLLAQLPAVSDLASLL 316

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   541 QGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIvaeareaslrerdtarqqletveKEKDAKLESLQQQLQA 620
Cdd:pfam13166  317 SAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIEL-----------------------DSVDAKIESINDLVAS 373

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   621 AND--ARDNAQTSVTQAQQEKAELS---QKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQ 695
Cdd:pfam13166  374 INEliAKHNEITDNFEEEKNKAKKKlrlHLVEEFKSEIDEYKDKYAGLEKAINSLEKEIKNLEA---EIKKLREEIKELE 450


                   ....
gi 254675300   696 EQLR 699
Cdd:pfam13166  451 AQLR 454
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 511-834 4.16e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 49.18  E-value: 4.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  511 RDQELASLKEQAKKEQAQMLQT---MQEQEQAAQGLRQQV------------EQLSSSLKLKEQQLEEAAKEQEATRQDH 575
Cdd:COG3096   783 REKRLEELRAERDELAEQYAKAsfdVQKLQRLHQAFSQFVgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQL 862

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  576 AQQLaivaeareaslrerDTARQQLETVEK-EKDAKL---ESLQQQLQAANDARDNAQtsvtQAQQEKAELSQKIGELH- 650
Cdd:COG3096   863 RQQL--------------DQLKEQLQLLNKlLPQANLladETLADRLEELREELDAAQ----EAQAFIQQHGKALAQLEp 924

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  651 --ACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ--------EKAQLQEQLRALEESLKITKGSLEEEKRRAA 720
Cdd:COG3096   925 lvAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQrrphfsyeDAVGLLGENSDLNEKLRARLEQAEEARREAR 1004

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  721 DALKEQQCRATEMEAESRSLMEQREREQKELeqekagrKGLEARIQQLEEAHQAETEAL----RHELAEAtASQHRA--- 793
Cdd:COG3096  1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTL-------QELEQELEELGVQADAEAEERarirRDELHEE-LSQNRSrrs 1076

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 254675300  794 ESECERLIREVESRQKRFEARQQEEaRYGAMFQEQLMALKG 834
Cdd:COG3096  1077 QLEKQLTRCEAEMDSLQKRLRKAER-DYKQEREQVVQAKAG 1116
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 244-923 4.33e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 48.96  E-value: 4.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   244 EKDAQIAMMQQRIDHLALLNEKQAASSQEPseleelrgkneslTVRLHETLKQCQNLKTEKSQMDRKISQLSEengDLSF 323
Cdd:pfam15921   82 EYSHQVKDLQRRLNESNELHEKQKFYLRQS-------------VIDLQTKLQEMQMERDAMADIRRRESQSQE---DLRN 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   324 KVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLE---NELSTALQDKKCLEEKNEILQGKLSQLEDQAT------- 393
Cdd:pfam15921  146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEgvlQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLgsaiski 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   394 --RLQESPAPEKGEVLGDALQLDTLKQEAaklatdntqlQTRVETLECERGKQEAQLLAERsrfEDEKQQLASLIADLQS 471
Cdd:pfam15921  226 lrELDTEISYLKGRIFPVEDQLEALKSES----------QNKIELLLQQHQDRIEQLISEH---EVEITGLTEKASSARS 292

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   472 SVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQE--------LASLKEQAKKEQAQMLQTMQEQEQAAQ-- 541
Cdd:pfam15921  293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmyedkIEELEKQLVLANSELTEARTERDQFSQes 372

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   542 -GLRQQVEQLSSSLKLKEQQLeEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLE----TVEKEKDAKLESLQQ 616
Cdd:pfam15921  373 gNLDDQLQKLLADLHKREKEL-SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEallkAMKSECQGQMERQMA 451

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   617 QLQAANDARDNAQTSVTQAQQEKAELSQKIGELHA---CIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:pfam15921  452 AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ 531

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   694 LQEQLRALEESLKITKGSLE------EEKRRAADALKEQQCRATE-----------MEAESRSLMEQREREQKELEQEKA 756
Cdd:pfam15921  532 ELQHLKNEGDHLRNVQTECEalklqmAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDRRLELQEFKI 611

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   757 GRKGLEARIQQLeEAHQAETEALRHELAEATASQHRA----ESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMAL 832
Cdd:pfam15921  612 LKDKKDAKIREL-EARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM 690

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   833 KGEKTGQEVQEEAVEIHSEgqpgQQQSQLAQLHASLAKAI-------QQVQEKEVRAQKLVDDLSALQEKMAATNKEVAC 905
Cdd:pfam15921  691 ETTTNKLKMQLKSAQSELE----QTRNTLKSMEGSDGHAMkvamgmqKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766

                          730
                   ....*....|....*...
gi 254675300   906 LKTLVLKAGEQQETASLE 923
Cdd:pfam15921  767 LKEEKNKLSQELSTVATE 784
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1485-1679 4.36e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 48.76  E-value: 4.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1485 THLAEMRQEAQSTSRELEVMTakyegakvKVLEERQRFQEERQKLTAQVEELSKkltehdQASKVQQQKLKAFQAQRGES 1564
Cdd:COG4913   235 DDLERAHEALEDAREQIELLE--------PIRELAERYAAARERLAELEYLRAA------LRLWFAQRRLELLEAELEEL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1565 QQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKThydakkqqnQKLQEQLQDLEELQKENKELRSEAERLGRELQQA 1644
Cdd:COG4913   301 RAELARLEAELERLEARLDALREELDELEAQIRGNGG---------DRLEQLEREIERLERELEERERRRARLEALLAAL 371

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 254675300 1645 GLKTKEAEQ----TCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG4913   372 GLPLPASAEefaaLRAEAAALLEALEEELEALEEALAEA 410
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 577-954 4.47e-05

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 49.06  E-value: 4.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  577 QQLAIVAEAREASLRERDTARQQ-LETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGElhaciea 655
Cdd:NF012221 1503 KTLKLTAKAGSNRLEFKGTGHNDgLGYILDNVVATSESSQQADAVSKHAKQDDAAQNALADKERAEADRQRLE------- 1575

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  656 shQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGsleeekrraADALKEQQCRATEMEA 735
Cdd:NF012221 1576 --QEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEESRAVTKELTTLAQG---------LDALDSQATYAGESGD 1644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  736 ESRSLMEQR--EREQKELEQEKagrKGLEARIQQLEEAHQAETEALRHELAEATASQHRAesecERLIREVESRQKrfEA 813
Cdd:NF012221 1645 QWRNPFAGGllDRVQEQLDDAK---KISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQG----EQNQANAEQDID--DA 1715

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  814 RQQEEARYGAMFQEQLMALKGEKTGQEVQEEAveihseGQPGQQQSQLAQLHASLAKAiqqvqekevraqklvDDLSALQ 893
Cdd:NF012221 1716 KADAEKRKDDALAKQNEAQQAESDANAAANDA------QSRGEQDASAAENKANQAQA---------------DAKGAKQ 1774

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  894 EKMAATNKEVACLKTLVLKAGEQQETA--SLELLKEPPRAAN-RASDQLGEQQGRPFSSTHAAV 954
Cdd:NF012221 1775 DESDKPNRQGAAGSGLSGKAYSVEGVAepGSHINPDSPAAADgRFSEGLTEQEQEALEGATNAV 1838
mukB PRK04863
chromosome partition protein MukB;
1444-1700 4.87e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 48.80  E-value: 4.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1444 AEENRGLGERANLGRQflevELDQAREKyvqelaavRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAK--VKVLEERQR 1521
Cdd:PRK04863  278 ANERRVHLEEALELRR----ELYTSRRQ--------LAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTALR 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1522 FQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAehykLQMEKAKT 1601
Cdd:PRK04863  346 QQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA----IQYQQAVQ 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1602 HYDAKKQQNQK---LQEQLQD-LEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAH--ADQQ 1675
Cdd:PRK04863  422 ALERAKQLCGLpdlTADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWdvAREL 501

                         250       260
                  ....*....|....*....|....*
gi 254675300 1676 LRDLGKFQvatdALKSREPQVKPQL 1700
Cdd:PRK04863  502 LRRLREQR----HLAEQLQQLRMRL 522
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 608-790 4.98e-05

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 47.90  E-value: 4.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  608 DAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKV 687
Cdd:COG3883    15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  688 VQEK--------------------------AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLM 741
Cdd:COG3883    95 LYRSggsvsyldvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 254675300  742 EQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQ 790
Cdd:COG3883   175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
374-551 5.88e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 48.09  E-value: 5.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  374 LEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNT--QLQTRVETLECERGKQEAQLLAE 451
Cdd:COG3206   210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLRAQLAELEAELAELSARYTPN 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  452 RSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQ 531
Cdd:COG3206   290 HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369

                         170       180
                  ....*....|....*....|
gi 254675300  532 TMQEQEQAAQGLRQQVEQLS 551
Cdd:COG3206   370 LLQRLEEARLAEALTVGNVR 389
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 941-1653 6.42e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 48.43  E-value: 6.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   941 EQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLA--QEKAAKAELE 1018
Cdd:TIGR00618  176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQ 255

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1019 MRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTEL--KELQQTLEQLKIQLVKKEKEHPAGGASGE 1096
Cdd:TIGR00618  256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQieQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1097 DASGPGTQSETagktdapgpeLQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQ-----DKALETLQGQLEEKA 1171
Cdd:TIGR00618  336 QQSSIEEQRRL----------LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQqqkttLTQKLQSLCKELDIL 405

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1172 RELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVargQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLV 1251
Cdd:TIGR00618  406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELC---AAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH 482

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1252 VAESEKSQKLEERLRLLQVETA---------SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELG 1322
Cdd:TIGR00618  483 LQETRKKAVVLARLLELQEEPCplcgscihpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK 562

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1323 QELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPakhlcqqlqaeqaaaekRFREELEQSKQAAGGLQAELMRAQREL 1402
Cdd:TIGR00618  563 EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-----------------LTEKLSEAEDMLACEQHALLRKLQPEQ 625

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1403 GELgSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAeeNRGLGERANLGRQFLEVELdQAREKYVQELAAVRTD 1482
Cdd:TIGR00618  626 DLQ-DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS--IRVLPKELLASRQLALQKM-QSEKEQLTYWKEMLAQ 701

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1483 AETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRG 1562
Cdd:TIGR00618  702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELS 781

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1563 ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQnqKLQEQLQDLEELQKENKELRSEAERLGRELQ 1642
Cdd:TIGR00618  782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLEEKSATLGEITHQLLKYEECSK 859

                          730
                   ....*....|.
gi 254675300  1643 QAGLKTKEAEQ 1653
Cdd:TIGR00618  860 QLAQLTQEQAK 870
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1149-1678 7.08e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 48.25  E-value: 7.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1149 ERACRAEQD-KALETLQGQLEEKARELGHNQAASASAQRELQALRAK-AQDHSKAEEEWKAQVARGQQEAERKSSLISS- 1225
Cdd:pfam01576   19 ERQQKAESElKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARlAARKQELEEILHELESRLEEEEERSQQLQNEk 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1226 --LEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVV 1303
Cdd:pfam01576   99 kkMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSL 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1304 SENSRQELASQAERAEELGQELKAWQEKffqkEQALSALQLEHTSTQALVSELlpakhlcqqlqaeqaaaEKRFREELEQ 1383
Cdd:pfam01576  179 SKLKNKHEAMISDLEERLKKEEKGRQEL----EKAKRKLEGESTDLQEQIAEL-----------------QAQIAELRAQ 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1384 SKQAAGGLQAELMRAQRELGELGSLRQKIVEqeraaqqLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEV 1463
Cdd:pfam01576  238 LAKKEEELQAALARLEEETAQKNNALKKIRE-------LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELED 310

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1464 ELD------QAREKYVQELAAVR-------TDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLT 1530
Cdd:pfam01576  311 TLDttaaqqELRSKREQEVTELKkaleeetRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQ 390

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1531 AQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQN 1610
Cdd:pfam01576  391 AELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300  1611 QKLQEQLQDlEELQKENKELR---SEAERLGRELQQaglktKEAEQTCRHLTAQVRSLEAQVAHADQQLRD 1678
Cdd:pfam01576  471 QDTQELLQE-ETRQKLNLSTRlrqLEDERNSLQEQL-----EEEEEAKRNVERQLSTLQAQLSDMKKKLEE 535
PRK11281 PRK11281
mechanosensitive channel MscK;
341-581 7.86e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 47.98  E-value: 7.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  341 DLIEEHSKASQEWAEKQARLENELSTaLQDKKCLEEKNEILQ-------GKLSQLEDQATRLQESPAPEKGEVLgDALQL 413
Cdd:PRK11281   46 DALNKQKLLEAEDKLVQQDLEQTLAL-LDKIDRQKEETEQLKqqlaqapAKLRQAQAELEALKDDNDEETRETL-STLSL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  414 DTLKQeaaKLATDNTQLQTRVETLecerGKQEAQLLAERSRFE----------DEKQQLASLIADLQSSVSNLS---QAK 480
Cdd:PRK11281  124 RQLES---RLAQTLDQLQNAQNDL----AEYNSQLVSLQTQPEraqaalyansQRLQQIRNLLKGGKVGGKALRpsqRVL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  481 EELEQAS-QAQGAQLTAQLTSMTGLNATLQQRdQELASLKEQakkEQAQMLQTMQEqeqAAQGLRqqveqlsssLKLKEQ 559
Cdd:PRK11281  197 LQAEQALlNAQNDLQRKSLEGNTQLQDLLQKQ-RDYLTARIQ---RLEHQLQLLQE---AINSKR---------LTLSEK 260

                         250       260
                  ....*....|....*....|....*.
gi 254675300  560 QLEEAAKEQEATRQDH----AQQLAI 581
Cdd:PRK11281  261 TVQEAQSQDEAARIQAnplvAQELEI 286
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 655-904 7.92e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 7.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  655 ASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQEQLRALEESLKitkgsleeekrRAADALKEQQCRATEME 734
Cdd:COG4942    17 AQADAAAEAEAELEQLQQEIAELEK---ELAALKKEEKALLKQLAALERRIA-----------ALARRIRALEQELAALE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  735 AESRSLMEQREREQKELEQEkagRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEAR 814
Cdd:COG4942    83 AELAELEKEIAELRAELEAQ---KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL-KYLAPARREQAEELRAD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  815 QQEEARYGAMFQEQLMALKGEKTGQEVQEEAVeihsEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQE 894
Cdd:COG4942   159 LAELAALRAELEAERAELEALLAELEEERAAL----EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234

                         250
                  ....*....|
gi 254675300  895 KMAATNKEVA 904
Cdd:COG4942   235 EAAAAAERTP 244
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 469-736 8.28e-05

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 48.13  E-value: 8.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  469 LQSSVSNLSQAKEELEqasQAQGAQLTAQLTSMTGLNATLQQRDQELASLkEQAKKEQaqmlQTMQEQEQAAQGLRQQVE 548
Cdd:PRK10929   18 YAATAPDEKQITQELE---QAKAAKTPAQAEIVEALQSALNWLEERKGSL-ERAKQYQ----QVIDNFPKLSAELRQQLN 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  549 QLSSSLKLKEQQLEEAAKEQEaTRQDHAQQLaivAEAREASlRERDTARQ------QLETVEKEKDAKLESLQQQLQAAN 622
Cdd:PRK10929   90 NERDEPRSVPPNMSTDALEQE-ILQVSSQLL---EKSRQAQ-QEQDRAREisdslsQLPQQQTEARRQLNEIERRLQTLG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  623 dardNAQTSVTQAQ--QEKAELSQKigelhacieashqeqrqvQARVTELE-AQLKA--EQQKTTEREKVVQEKA-QLQE 696
Cdd:PRK10929  165 ----TPNTPLAQAQltALQAESAAL------------------KALVDELElAQLSAnnRQELARLRSELAKKRSqQLDA 222

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 254675300  697 QLRALEESLKITKgsleeeKRRAADALKEqqcraTEMEAE 736
Cdd:PRK10929  223 YLQALRNQLNSQR------QREAERALES-----TELLAE 251
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1183-1697 9.07e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.91  E-value: 9.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1183 SAQRELQALRAKAQDHSKAEEEWKAQVARGQQEaerKSSLISSLEEEVsilNRQVLEKEGESKELKRLVVAESEKSQKLE 1262
Cdd:pfam12128  255 SAELRLSHLHFGYKSDETLIASRQEERQETSAE---LNQLLRTLDDQW---KEKRDELNGELSAADAAVAKDRSELEALE 328

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1263 ERLRLLQVETASNSARAAERSSALREEVQSLREEVE-----KQRVVSENSRQELASQAERAEELgQELKAWQEKffQKEQ 1337
Cdd:pfam12128  329 DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKaltgkHQDVTAKYNRRRSKIKEQNNRDI-AGIKDKLAK--IREA 405

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1338 ALSALQLEHTSTQALVSELlpakhlcqqlQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQER 1417
Cdd:pfam12128  406 RDRQLAVAEDDLQALESEL----------REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIER 475

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1418 AAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGeRANLGRQFLEVELDQAREKYVQE----LAAVRTDA---ETHLAEM 1490
Cdd:pfam12128  476 AREEQEAANAEVERLQSELRQARKRRDQASEALR-QASRRLEERQSALDELELQLFPQagtlLHFLRKEApdwEQSIGKV 554

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1491 RQEAQ-------------STSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAF 1557
Cdd:pfam12128  555 ISPELlhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGEL 634

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1558 -QAQRGES------QQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAkkQQNQKLQEQLQDLEELQKENKEL 1630
Cdd:pfam12128  635 eKASREETfartalKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEA--QLKQLDKKHQAWLEEQKEQKREA 712

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  1631 RSEAERLGRELQQAgLKTKEAEQTCRHLTAQVrSLEAQVAHADQQL-RDLGKFQVATDALKSREPQVK 1697
Cdd:pfam12128  713 RTEKQAYWQVVEGA-LDAQLALLKAAIAARRS-GAKAELKALETWYkRDLASLGVDPDVIAKLKREIR 778
PRK09039 PRK09039
peptidoglycan -binding protein;
456-621 9.28e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 46.88  E-value: 9.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  456 EDEKQQLASLIADLQSSVSNLSQAKEELeqasQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQE 535
Cdd:PRK09039   52 DSALDRLNSQIAELADLLSLERQGNQDL----QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  536 QEQAAQGLRQQVEQLSsslklkeQQLeeaakeqEATRqdhaQQLAIVAEAREASlrerdtarqqlETVEKEKDAKLESLQ 615
Cdd:PRK09039  128 EKQVSARALAQVELLN-------QQI-------AALR----RQLAALEAALDAS-----------EKRDRESQAKIADLG 178


                  ....*.
gi 254675300  616 QQLQAA 621
Cdd:PRK09039  179 RRLNVA 184
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 333-637 9.64e-05

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 47.74  E-value: 9.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  333 QQLQGAFNDLieEHSKASQEWAEKQARLENE---LSTALQDKKCLEEKN---------------EILQGKlSQLEDQATR 394
Cdd:PRK10929   48 EALQSALNWL--EERKGSLERAKQYQQVIDNfpkLSAELRQQLNNERDEprsvppnmstdaleqEILQVS-SQLLEKSRQ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  395 LQESPapEKGEVLGDAL-QLDTLKQEAAKLATD-------------------NTQLQT-------RVETLECergkqeAQ 447
Cdd:PRK10929  125 AQQEQ--DRAREISDSLsQLPQQQTEARRQLNEierrlqtlgtpntplaqaqLTALQAesaalkaLVDELEL------AQ 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  448 LLAE------RSRFEDEKQQLASLIADLQSSVSNL-SQAKEELEQASQA------QGAQLTAQLTSMTGLNATLQQrdqe 514
Cdd:PRK10929  197 LSANnrqelaRLRSELAKKRSQQLDAYLQALRNQLnSQRQREAERALEStellaeQSGDLPKSIVAQFKINRELSQ---- 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  515 laslkeqAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRqdhaQQLAIVAEAREASLRERD 594
Cdd:PRK10929  273 -------ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR----AQVARLPEMPKPQQLDTE 341

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 254675300  595 TARQQLETVekekdaKLESLQQQLQAANDARDNAQTSVTQAQQ 637
Cdd:PRK10929  342 MAQLRVQRL------RYEDLLNKQPQLRQIRQADGQPLTAEQN 378
PRK11637 PRK11637
AmiB activator; Provisional
 448-760 1.10e-04

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 47.00  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  448 LLAERSRFEDEKQQLASLIADLqssvsnlsQAKEELEQASQaqgaqltaqltsmtglnatlQQRDQELASLKEQaKKEQA 527
Cdd:PRK11637   35 LCAFSAHASDNRDQLKSIQQDI--------AAKEKSVRQQQ--------------------QQRASLLAQLKKQ-EEAIS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  528 QMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQleeaakeqeatrqdHAQQLAIVAEAREASLRERDTARQQLeTVEKEK 607
Cdd:PRK11637   86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQ--------------QAAQERLLAAQLDAAFRQGEHTGLQL-ILSGEE 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  608 DAKLESLQQQLQAANDARdnaQTSVTQAQQEKAELSQKIGELhaciEASHQEQRQVqarVTELEAQLKAEQQKTTEREKV 687
Cdd:PRK11637  151 SQRGERILAYFGYLNQAR---QETIAELKQTREELAAQKAEL----EEKQSQQKTL---LYEQQAQQQKLEQARNERKKT 220

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675300  688 vqekaqlqeqLRALEESLKITKGSLEEEKRRAAdALKEQQCRAtEMEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:PRK11637  221 ----------LTGLESSLQKDQQQLSELRANES-RLRDSIARA-EREAKARAEREAREAARVRDKQKQAKRKG 281
CHASE3 COG5278
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
464-904 1.38e-04

Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];


Pssm-ID: 444089 [Multi-domain]  Cd Length: 530  Bit Score: 46.82  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  464 SLIADLQSSVSNLSQAKEELEQASQAQGAQLtAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGL 543
Cdd:COG5278    76 SFLEPYEEARAEIDELLAELRSLTADNPEQQ-ARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEI 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  544 RQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND 623
Cdd:COG5278   155 RARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALEL 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  624 ARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEE 703
Cdd:COG5278   235 LAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAA 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  704 SLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHEL 783
Cdd:COG5278   315 AAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLA 394

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  784 AEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQ 863
Cdd:COG5278   395 IAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAAL 474

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 254675300  864 LHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVA 904
Cdd:COG5278   475 AALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEA 515
PRK11281 PRK11281
mechanosensitive channel MscK;
1375-1665 1.45e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 47.21  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1375 KRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLgerA 1454
Cdd:PRK11281   76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL---V 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1455 NLgrqfleveldQAREKYVQelaAVRTDAETHLAEMRQEAQSTSrelevmtakyEGAKVKVLEERQRFQEERQKLTAQVE 1534
Cdd:PRK11281  153 SL----------QTQPERAQ---AALYANSQRLQQIRNLLKGGK----------VGGKALRPSQRVLLQAEQALLNAQND 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1535 ELSKKLTEHDQASKV--QQQKLKAFQAQRgeSQQEVQRLQTQLNELQAQLSQKEqaaehyklqmekakthydAKKQQNQK 1612
Cdd:PRK11281  210 LQRKSLEGNTQLQDLlqKQRDYLTARIQR--LEHQLQLLQEAINSKRLTLSEKT------------------VQEAQSQD 269

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675300 1613 LQEQLQDLEELQKE---NKELRS---EAERLGRELQQAGLKTKE----AEQTCRHLTAQVRSL 1665
Cdd:PRK11281  270 EAARIQANPLVAQEleiNLQLSQrllKATEKLNTLTQQNLRVKNwldrLTQSERNIKEQISVL 332
46 PHA02562
endonuclease subunit; Provisional
 503-725 1.49e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 46.93  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  503 GLNATLQQRDQELASLKEQAK-------------KEQAQMLQTMQEQE-QAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQ 568
Cdd:PHA02562  178 ELNQQIQTLDMKIDHIQQQIKtynknieeqrkknGENIARKQNKYDELvEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  569 EATRQDHAQQLAIVAE-AREASLRERD----TARQQLET----VEKEKDaKLESLQQQLQAANDARDNAQ---TSVTQAQ 636
Cdd:PHA02562  258 NKLNTAAAKIKSKIEQfQKVIKMYEKGgvcpTCTQQISEgpdrITKIKD-KLKELQHSLEKLDTAIDELEeimDEFNEQS 336

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  637 QEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKaqlqeqlraleESLKITKGSLEEEK 716
Cdd:PHA02562  337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV---DNAEELAKLQDEL-----------DKIVKTKSELVKEK 402

                         250
                  ....*....|..
gi 254675300  717 RR---AADALKE 725
Cdd:PHA02562  403 YHrgiVTDLLKD 414
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
 608-702 1.74e-04

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 46.26  E-value: 1.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   608 DAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV-QARVTELEAQLK-AEQQKTTERE 685
Cdd:TIGR04320  260 QAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALAnAEARLAKAKE 339

                           90
                   ....*....|....*..
gi 254675300   686 KVVQEKAQLQEQLRALE 702
Cdd:TIGR04320  340 ALANLNADLAKKQAALD 356
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1467-1675 1.74e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1467 QAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQA 1546
Cdd:COG4942    37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRL 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1547 SKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKE 1626
Cdd:COG4942   117 GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 254675300 1627 NKELRSEAERLGRELQQAGLKTKEAEQTcrhLTAQVRSLEAQVAHADQQ 1675
Cdd:COG4942   197 RQKLLARLEKELAELAAELAELQQEAEE---LEALIARLEAEAAAAAER 242
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1514-1684 1.87e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 46.05  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1514 KVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYK 1593
Cdd:COG4372     7 KVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1594 LQMEKAKTHYDAKKQQNQKLQEQL----QDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQV 1669
Cdd:COG4372    87 EQLQAAQAELAQAQEELESLQEEAeelqEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEEL 166

                         170
                  ....*....|....*
gi 254675300 1670 AHADQQLRDLGKFQV 1684
Cdd:COG4372   167 AALEQELQALSEAEA 181
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 430-803 1.87e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 46.43  E-value: 1.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQaqgaQLTAQLTSMTGLNATLQ 509
Cdd:pfam07888   32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELR----QSREKHEELEEKYKELS 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   510 QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKeQEATRQDHAQQLAIVAEAREAS 589
Cdd:pfam07888  108 ASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGA-QRKEEEAERKQLQAKLQQTEEE 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   590 LRERDTARQQLETVEKEKDAKLESLQqqlqaanDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTE 669
Cdd:pfam07888  187 LRSLSKEFQELRNSLAQRDTQVLQLQ-------DTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   670 LEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESrslmeqrEREQK 749
Cdd:pfam07888  260 LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAEL-------QRLEE 332

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....
gi 254675300   750 ELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIRE 803
Cdd:pfam07888  333 RLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAE 386
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 508-677 2.10e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 44.92  E-value: 2.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  508 LQQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEARE 587
Cdd:COG1579    12 LQELDSELDRLEHRLKELPAE-LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  588 ASLRERD-----TARQQLETVEKEKDAKLESLQQQLQAANDARDnaqtsvtqaqQEKAELSQKIGELHACIEASHQEQRQ 662
Cdd:COG1579    91 YEALQKEieslkRRISDLEDEILELMERIEELEEELAELEAELA----------ELEAELEEKKAELDEELAELEAELEE 160

                         170
                  ....*....|....*
gi 254675300  663 VQARVTELEAQLKAE 677
Cdd:COG1579   161 LEAEREELAAKIPPE 175
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 578-903 2.12e-04

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 45.83  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   578 QLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:pfam19220   31 QLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   658 QEQRQVQARVTELEAQLKAEqqkTTEREKVVQEKAQLQEQLRALEESLKITKGSL----------EEEKRRAADALKEQQ 727
Cdd:pfam19220  111 IELRDKTAQAEALERQLAAE---TEQNRALEEENKALREEAQAAEKALQRAEGELatarerlallEQENRRLQALSEEQA 187

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   728 CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEAT----ASQHRAES------EC 797
Cdd:pfam19220  188 AELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRmkleALTARAAAteqllaEA 267

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   798 ERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIqqvQE 877
Cdd:pfam19220  268 RNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQ--------RARAELEERAEMLTKAL---AA 336

                          330       340
                   ....*....|....*....|....*.
gi 254675300   878 KEVRAQKLVDDLSALQEKMAATNKEV 903
Cdd:pfam19220  337 KDAALERAEERIASLSDRIAELTKRF 362
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
 381-756 2.20e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 46.35  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   381 LQGKLSQLEDQATRL-----QESPAPEKGEVLGDALQLDtlKQEAAKLATDNTQLQTRVETLECERGKQEAQLLaersRF 455
Cdd:pfam10174  298 LSKKESELLALQTKLetltnQNSDCKQHIEVLKESLTAK--EQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ----DL 371

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   456 EDEKQQLASLIAD--------------LQSSVSNLSQA-------KEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQE 514
Cdd:pfam10174  372 TEEKSTLAGEIRDlkdmldvkerkinvLQKKIENLQEQlrdkdkqLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERI 451

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   515 LASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAakeqeatrQDHAQQLAivaeareASLRERD 594
Cdd:pfam10174  452 IERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDL--------KEHASSLA-------SSGLKKD 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTsvtqaqqeKAELSQKIGELHACIEASHQEQRQVQARVTELEAQL 674
Cdd:pfam10174  517 SKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRT--------NPEINDRIRLLEQEVARYKEESGKAQAEVERLLGIL 588

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   675 K-AEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESR-----SLMEQREREQ 748
Cdd:pfam10174  589 ReVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQqlqleELMGALEKTR 668


                   ....*...
gi 254675300   749 KELEQEKA 756
Cdd:pfam10174  669 QELDATKA 676
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
554-908 2.25e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 45.66  E-value: 2.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  554 LKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVT 633
Cdd:COG4372    18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  634 QAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKITKGSLE 713
Cdd:COG4372    98 QAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAERE---EELKELEEQLESLQEELAALEQELQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  714 EEKRRAADALKEQQCRATEMEAEsrSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRA 793
Cdd:COG4372   175 ALSEAEAEQALDELLKEANRNAE--KEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELL 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  794 ESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQ 873
Cdd:COG4372   253 EEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELAL 332

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 254675300  874 QVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKT 908
Cdd:COG4372   333 AILLAELADLLQLLLVGLLDNDVLELLSKGAEAGV 367
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 1558-1680 2.29e-04

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 46.48  E-value: 2.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1558 QAQRGESQQEVQRLQTQLnELQAQlsQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEA-ER 1636
Cdd:PRK11448  141 ENLLHALQQEVLTLKQQL-ELQAR--EKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERkQK 217

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 254675300 1637 LGRELQQAGLKTKEAEQTCRHLTaqvrsleaqvahaDQQLRDLG 1680
Cdd:PRK11448  218 RKEITDQAAKRLELSEEETRILI-------------DQQLRKAG 248
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 513-817 2.40e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 46.04  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   513 QELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKL---KEQQLEEAAKEQEATRQDHAQQLAIVAEAREAS 589
Cdd:pfam07888   48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQsreKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   590 ---LRERDTARQQLETVEKEKDAKLESLQQ-------QLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQE 659
Cdd:pfam07888  128 earIRELEEDIKTLTQRVLERETELERMKErakkagaQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQ 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   660 QRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEE---EKRRAADALKEQQCRATEME-- 734
Cdd:pfam07888  208 VLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSmaaQRDRTQAELHQARLQAAQLTlq 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   735 -AESRSLM--------EQREREQKELEQEKAGRKGLEARIQQLEEAHQAET---EALRHELAEATASQHRAESECERLIR 802
Cdd:pfam07888  288 lADASLALregrarwaQERETLQQSAEADKDRIEKLSAELQRLEERLQEERmerEKLEVELGREKDCNRVQLSESRRELQ 367

                          330
                   ....*....|....*
gi 254675300   803 EVESRQKRFEARQQE 817
Cdd:pfam07888  368 ELKASLRVAQKEKEQ 382
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 462-837 2.42e-04

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 45.83  E-value: 2.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   462 LASLIADLQSSVSNLSQAKEELEQAsQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQ 541
Cdd:pfam19220   22 LRSLKADFSQLIEPIEAILRELPQA-KSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALR 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   542 GLRQQVEQLSSSLKLKEQQLEEAAKeqeatrqdhaqQLAIVAEAREASLRERDTARQQLETVEK---EKDAKLESLQQQL 618
Cdd:pfam19220  101 EAEAAKEELRIELRDKTAQAEALER-----------QLAAETEQNRALEEENKALREEAQAAEKalqRAEGELATARERL 169

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   619 QAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQAR-VTELEAQLKAEQQKTTEREKVVQEKAQLQEQ 697
Cdd:pfam19220  170 ALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQlAAEQAERERAEAQLEEAVEAHRAERASLRMK 249

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   698 LRALEESLKITKgSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETE 777
Cdd:pfam19220  250 LEALTARAAATE-QLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAE 328

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   778 ALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKT 837
Cdd:pfam19220  329 MLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAERA 388
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1153-1357 2.93e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1153 RAEQDKALETLQGQLEEKARELghnqaasASAQRELQALRAKAQdhskaeeewkaqVARGQQEAERKSSLISSLEEEVSI 1232
Cdd:COG3206   170 REEARKALEFLEEQLPELRKEL-------EEAEAALEEFRQKNG------------LVDLSEEAKLLLQQLSELESQLAE 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1233 LNRQVLEKEGESKELKRLV---------VAESEKSQKLEERLRLLQVETASNSARAAERSS---ALREEVQSLREEVEKQ 1300
Cdd:COG3206   231 ARAELAEAEARLAALRAQLgsgpdalpeLLQSPVIQQLRAQLAELEAELAELSARYTPNHPdviALRAQIAALRAQLQQE 310

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675300 1301 -RVVSENSRQELASQAERAEELGQELKAWQEKFF---QKEQALSALQLEHTSTQALVSELL 1357
Cdd:COG3206   311 aQRILASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVARELYESLL 371
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 1146-1342 3.28e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 45.82  E-value: 3.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1146 LKSERACRAEQDKA------LETLQGQLEEKARELghnqaasASAQRELQALRAKAQDHSKAeeewkaQVARGQQEAERK 1219
Cdd:PRK10929  119 LEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQL-------NEIERRLQTLGTPNTPLAQA------QLTALQAESAAL 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1220 SSLISSLE-EEVSILNRQvlekegeskELKRLvvaESEKSQKLEERL--RLLQVETASNSAR------AAERSSALREEV 1290
Cdd:PRK10929  186 KALVDELElAQLSANNRQ---------ELARL---RSELAKKRSQQLdaYLQALRNQLNSQRqreaerALESTELLAEQS 253

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1291 QSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSAL 1342
Cdd:PRK10929  254 GDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTL 305
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
357-571 3.47e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  357 QARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQES----PAPEKGEVLGDalQLDTLKQEAAKLATDNTQLQT 432
Cdd:COG3206   163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQ--QLSELESQLAEARAELAEAEA 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  433 RVETLE--CERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLS-------QAKEELEQASQAQGAQLTAQLTSMTG 503
Cdd:COG3206   241 RLAALRaqLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQEAQRILASLEA 320

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  504 LNATLQQRDQELASLKEQAKKEqaqmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG3206   321 ELEALQAREASLQAQLAQLEAR----LAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALT 384
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1159-1679 3.59e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 46.10  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1159 ALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKA------QVARGQQEAERKSSL----ISSLEE 1228
Cdd:COG3096   362 RLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTraiqyqQAVQALEKARALCGLpdltPENAED 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1229 EVSILNRQVLEKEGESKELK-RLVVAESEKSQkLEERLRLLQvetasNSARAAERSSALREEVQSLREEVEKQRVVSENS 1307
Cdd:COG3096   442 YLAAFRAKEQQATEEVLELEqKLSVADAARRQ-FEKAYELVC-----KIAGEVERSQAWQTARELLRRYRSQQALAQRLQ 515

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1308 --RQELA------SQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFRE 1379
Cdd:COG3096   516 qlRAQLAeleqrlRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIK 595

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1380 ELEQSKQAAGGLQAELMRAQRELGE-------LGSLRQKIVEQERAAQ----QLRAEKASYAEQLSMLKKAHGLLAEENR 1448
Cdd:COG3096   596 ELAARAPAWLAAQDALERLREQSGEaladsqeVTAAMQQLLEREREATverdELAARKQALESQIERLSQPGGAEDPRLL 675

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1449 GLGERAN---LGRQFLEVELDQARE---KY--------VQELAAVRT------DAETHLAEMRQEAQS---TSRELEVMt 1505
Cdd:COG3096   676 ALAERLGgvlLSEIYDDVTLEDAPYfsaLYgparhaivVPDLSAVKEqlagleDCPEDLYLIEGDPDSfddSVFDAEEL- 754

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1506 akyEGAKVKVLEERQ----RF----------QEER-QKLTAQVEELSKkltEHDQASKVQQ------QKLKAFQAQ---- 1560
Cdd:COG3096   755 ---EDAVVVKLSDRQwrysRFpevplfgraaREKRlEELRAERDELAE---QYAKASFDVQklqrlhQAFSQFVGGhlav 828

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1561 --RGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYdakkQQNQKLQEQL-----QDLEELQKENKELRSE 1633
Cdd:COG3096   829 afAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQL----QLLNKLLPQAnlladETLADRLEELREELDA 904

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*....
gi 254675300 1634 AERLGRELQQAGLKTKEAE---QTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG3096   905 AQEAQAFIQQHGKALAQLEplvAVLQSDPEQFEQLQADYLQAKEQQRRL 953
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
445-584 3.91e-04

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 45.23  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  445 EAQLLAERSRFEDEKQQLASL-----IADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLK 519
Cdd:COG3524   183 EEEVERAEERLRDAREALLAFrnrngILDPEATAEALLQLIATLEGQLAELEAELAALRSYLSPNSPQVRQLRRRIAALE 262

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  520 EQAKKEQAQMlqTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQ---LAIVAE 584
Cdd:COG3524   263 KQIAAERARL--TGASGGDSLASLLAEYERLELEREFAEKAYTSALAALEQARIEAARQqryLAVIVQ 328
mukB PRK04863
chromosome partition protein MukB;
1272-1669 3.93e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 45.72  E-value: 3.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1272 TASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFfQKEQALSALQLEHTSTQA 1351
Cdd:PRK04863  277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL-NLVQTALRQQEKIERYQA 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1352 LVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELgslrQKIVEQERAAQQL--RAEKASY 1429
Cdd:PRK04863  356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQAleRAKQLCG 431

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1430 AEQLSmLKKAHGLLAE---ENRGLGERANLGRQFLEVElDQAREKYVQELAAVRTDAethlAEM-RQEAQSTSRELEvmt 1505
Cdd:PRK04863  432 LPDLT-ADNAEDWLEEfqaKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIA----GEVsRSEAWDVARELL--- 502

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1506 akyegakvkvleerqRFQEERQKLTAQVEELSKKLTEHDQASKVQQQklkAFQAQRGESQQEVQRLQTQlNELQAQLSQK 1585
Cdd:PRK04863  503 ---------------RRLREQRHLAEQLQQLRMRLSELEQRLRQQQR---AERLLAEFCKRLGKNLDDE-DELEQLQEEL 563

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1586 EQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRE--------------LQQAGLKTKEA 1651
Cdd:PRK04863  564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQsgeefedsqdvteyMQQLLEREREL 643

                         410
                  ....*....|....*...
gi 254675300 1652 EQTCRHLTAQVRSLEAQV 1669
Cdd:PRK04863  644 TVERDELAARKQALDEEI 661
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 211-483 4.12e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.82  E-value: 4.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHL-ALLNEKQAASSQEPSELEELRGKNESLTVR 289
Cdd:TIGR02168  753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALrEALDELRAELTLLNEEAANLRERLESLERR 832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   290 LHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREF---ANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELST 366
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseLEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   367 ALQDKKCLEEKNEILQGKLSQLEDQATRLQESpAPEKGEVLgdalqLDTLKQEAAKLATDNTQLQTRVETLECERGK--- 443
Cdd:TIGR02168  913 LRRELEELREKLAQLELRLEGLEVRIDNLQER-LSEEYSLT-----LEEAEALENKIEDDEEEARRRLKRLENKIKElgp 986

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 254675300   444 ------QEAQLLAERSRFedekqqLASLIADLQSSVSNLSQAKEEL 483
Cdd:TIGR02168  987 vnlaaiEEYEELKERYDF------LTAQKEDLTEAKETLEEAIEEI 1026
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
543-680 4.17e-04

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 44.65  E-value: 4.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  543 LRQQVEQLSSSLKLKEQQLEeAAKEQEATRQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDAKLESlQQQLQAAN 622
Cdd:COG1566    81 LQAALAQAEAQLAAAEAQLA-RLEAELGAEAEIAAAEAQLAAAQA----QLDLAQRELERYQALYKKGAVS-QQELDEAR 154

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 254675300  623 DARDNAQTSVTQAQqekAELSQKIGELhacieASHQEQRQVQARVTELEAQLKAEQQK 680
Cdd:COG1566   155 AALDAAQAQLEAAQ---AQLAQAQAGL-----REEEELAAAQAQVAQAEAALAQAELN 204
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 459-1219 4.56e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.49  E-value: 4.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   459 KQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTaqlTSMTGLNATLQQRDQELASLKEQAKKEQaqmlqtmQEQEQ 538
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR---QSVIDLQTKLQEMQMERDAMADIRRRES-------QSQED 142

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   539 AAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAR-------EAS---LRERDTAR----------- 597
Cdd:pfam15921  143 LRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsilvdfeEASgkkIYEHDSMStmhfrslgsai 222

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   598 ----QQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAElsQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:pfam15921  223 skilRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIE--QLISEHEVEITGLTEKASSARSQANSIQSQ 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   674 LKAEQqktterEKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAEsrsLMEQRErEQKELEQ 753
Cdd:pfam15921  301 LEIIQ------EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE---LTEART-ERDQFSQ 370

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   754 EKAgrkGLEARIQQ-LEEAHQAETE-ALRHELAEATASQHRAESecerliREVESRQKRFEARQQEEARYGAMfqeqLMA 831
Cdd:pfam15921  371 ESG---NLDDQLQKlLADLHKREKElSLEKEQNKRLWDRDTGNS------ITIDHLRRELDDRNMEVQRLEAL----LKA 437

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   832 LKGEKTGQeVQEEAVEIHSEGQPGQQQSQL-AQLHAS---LAKAIQQVQEKEV---RAQKLVDDLSA-LQEK---MAATN 900
Cdd:pfam15921  438 MKSECQGQ-MERQMAAIQGKNESLEKVSSLtAQLESTkemLRKVVEELTAKKMtleSSERTVSDLTAsLQEKeraIEATN 516

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   901 KEVACLKTLV-LKAGE--------------QQETASLEL-------LKEPPRAANRASDQLGEQQGRPFSSTHAAVKAME 958
Cdd:pfam15921  517 AEITKLRSRVdLKLQElqhlknegdhlrnvQTECEALKLqmaekdkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   959 REAEQMGGELERLRA------ALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEF 1032
Cdd:pfam15921  597 KEINDRRLELQEFKIlkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1033 AALQEALAHALTEKEGTDQELaklrgqeaaqRTELKELQQTLEQLKIQLVKKEkehpaggasGEDASGPGTQSETAGKTD 1112
Cdd:pfam15921  677 EVLKRNFRNKSEEMETTTNKL----------KMQLKSAQSELEQTRNTLKSME---------GSDGHAMKVAMGMQKQIT 737

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1113 APGPELQALRAEISKLEqqcqqqqqqvEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRelqaLR 1192
Cdd:pfam15921  738 AKRGQIDALQSKIQFLE----------EAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR----LK 803

                          810       820
                   ....*....|....*....|....*..
gi 254675300  1193 AKAQDHSKAEEEWKAQVARGQQEAERK 1219
Cdd:pfam15921  804 EKVANMEVALDKASLQFAECQDIIQRQ 830
mukB PRK04863
chromosome partition protein MukB;
1150-1645 4.65e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 45.72  E-value: 4.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1150 RACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQdhskaeeewKAQVARGQQEAERKSSliSSLEEe 1229
Cdd:PRK04863  292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN---------LVQTALRQQEKIERYQ--ADLEE- 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1230 vsilnrqvlekegeskelkrlvvaeseksqkLEERLrllqvetasnsaraaERSSALREEVQSLREEVEKQRVVSENSRQ 1309
Cdd:PRK04863  360 -------------------------------LEERL---------------EEQNEVVEEADEQQEENEARAEAAEEEVD 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1310 ELASQaerAEELGQELKAWQEKFFQKEQALSALQlehtstqalvsellPAKHLCQQlqaeqaaaekrfrEELEQSKqaAG 1389
Cdd:PRK04863  394 ELKSQ---LADYQQALDVQQTRAIQYQQAVQALE--------------RAKQLCGL-------------PDLTADN--AE 441

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1390 GLQAELMRAQRELG-ELGSLRQKIVEQERAAQQlraekasYAEQLSMLKKAHGLLaeenrglgERANLGRQFLEVELDQA 1468
Cdd:PRK04863  442 DWLEEFQAKEQEATeELLSLEQKLSVAQAAHSQ-------FEQAYQLVRKIAGEV--------SRSEAWDVARELLRRLR 506

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1469 REKYvqeLAAVRTDAETHLAEMRQEAQStSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASK 1548
Cdd:PRK04863  507 EQRH---LAEQLQQLRMRLSELEQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRM 582

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1549 VQQQKLKAFQAQRgesqQEVQRLQTQLNELQAQLSQ-KEQAAEhyklqmekaktHYDAKKQQNQKLQEQLQDLEELQKEN 1627
Cdd:PRK04863  583 ALRQQLEQLQARI----QRLAARAPAWLAAQDALARlREQSGE-----------EFEDSQDVTEYMQQLLERERELTVER 647

                         490       500
                  ....*....|....*....|.
gi 254675300 1628 KELRSEAERLGRE---LQQAG 1645
Cdd:PRK04863  648 DELAARKQALDEEierLSQPG 668
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1514-1675 5.37e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.14  E-value: 5.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1514 KVLEERQRFQEERQKLTAQVEELSKKLTE--HDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEH 1591
Cdd:COG4717    85 EKEEEYAELQEELEELEEELEELEAELEElrEELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEE 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1592 YK-LQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAglktkeaEQTCRHLTAQVRSLEAQVA 1670
Cdd:COG4717   165 LEeLEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA-------QEELEELEEELEQLENELE 237


                  ....*
gi 254675300 1671 HADQQ 1675
Cdd:COG4717   238 AAALE 242
Nup88 pfam10168
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ...
 1510-1634 5.42e-04

Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.


Pssm-ID: 462975 [Multi-domain]  Cd Length: 713  Bit Score: 45.04  E-value: 5.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1510 GAKVKVLEERQRFQEERQKLTAQVEELSKKLTE--HDQASKVQQQK--LKAFQAQ-------RGESQQEVQRLQTQLNEL 1578
Cdd:pfam10168  568 LQKEQQLQELQSLEEERKSLSERAEKLAEKYEEikDKQEKLMRRCKkvLQRLNSQlpvlsdaEREMKKELETINEQLKHL 647

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  1579 QAQLSQKEQAAEHYKLQMEKAKTHYDA---------KKQQNQKLQEQLQDLEELQKENKELRSEA 1634
Cdd:pfam10168  648 ANAIKQAKKKMNYQRYQIAKSQSIRKKsslslsekqRKTIKEILKQLGSEIDELIKQVKDINKHV 712
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 466-693 5.54e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.44  E-value: 5.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  466 IADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQ 545
Cdd:COG3883    18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  546 QVEQLSSSLKLKEQQ-LEEAAkeqeatrqDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDA 624
Cdd:COG3883    98 SGGSVSYLDVLLGSEsFSDFL--------DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  625 RDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:COG3883   170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1444-1679 5.61e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 45.33  E-value: 5.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1444 AEENRGLGERANLGRQflevELDQAREKyvqelaavRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAK--VKVLEERQR 1521
Cdd:COG3096   277 ANERRELSERALELRR----ELFGARRQ--------LAEEQYRLVEMARELEELSARESDLEQDYQAASdhLNLVQTALR 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1522 FQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQ----------AQLSQKEQAAEH 1591
Cdd:COG3096   345 QQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQqaldvqqtraIQYQQAVQALEK 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1592 YKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQA---------GLKTKEAEQTCRHLTAQV 1662
Cdd:COG3096   425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAyelvckiagEVERSQAWQTARELLRRY 504

                         250       260
                  ....*....|....*....|
gi 254675300 1663 RSLEAQVAHADQ---QLRDL 1679
Cdd:COG3096   505 RSQQALAQRLQQlraQLAEL 524
PRK09039 PRK09039
peptidoglycan -binding protein;
568-721 5.85e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.57  E-value: 5.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  568 QEATRQDHA-----QQLAIVAEAreASLRERdtARQQLEtvekekdAKLESLQQQLQAANDARDNAQTSVTQAQQEKAEL 642
Cdd:PRK09039   46 REISGKDSAldrlnSQIAELADL--LSLERQ--GNQDLQ-------DSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  643 SQKIGELHACIEASHQEQRQVQARVTELEAQLkaeqqktterekvvqekAQLQEQLRALEESLKITKGSLEEEKRRAAD 721
Cdd:PRK09039  115 EGRAGELAQELDSEKQVSARALAQVELLNQQI-----------------AALRRQLAALEAALDASEKRDRESQAKIAD 176
PRK09039 PRK09039
peptidoglycan -binding protein;
1523-1644 5.96e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.19  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1523 QEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ-------KEQAAEHYKLQ 1595
Cdd:PRK09039   52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAaegrageLAQELDSEKQV 131

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675300 1596 MEKAKTHYDAKKQQNQKLQEQLQDLEEL----QKENKELRSEAERLGRELQQA 1644
Cdd:PRK09039  132 SARALAQVELLNQQIAALRRQLAALEAAldasEKRDRESQAKIADLGRRLNVA 184
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
 459-562 6.25e-04

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 44.33  E-value: 6.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   459 KQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ 538
Cdd:TIGR04320  253 PNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAY----AAAQAALATAQKELANAQAQALQTAQNNLATAQAALA 328

                           90       100
                   ....*....|....*....|....*...
gi 254675300   539 AAQG----LRQQVEQLSSSLKLKEQQLE 562
Cdd:TIGR04320  329 NAEArlakAKEALANLNADLAKKQAALD 356
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1281-1681 6.84e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 45.03  E-value: 6.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1281 ERSSALREEVQSLREEVEkqrvvsensrqELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEllpak 1360
Cdd:PRK02224  206 ERLNGLESELAELDEEIE-----------RYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAE----- 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1361 hlcqqlqaeQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGeLGSLRQKIVEQERAAqqLRAEKASYAEQLSMLKKAH 1440
Cdd:PRK02224  270 ---------TEREREELAEEVRDLRERLEELEEERDDLLAEAG-LDDADAEAVEARREE--LEDRDEELRDRLEECRVAA 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1441 GLLAEENRGLGERANLgrqfLEVELDQAREKyVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKV---KVLE 1517
Cdd:PRK02224  338 QAHNEEAESLREDADD----LEERAEELREE-AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdlgNAED 412

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1518 ERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQ--------------AQRGESQQEVQRLQTQLNELQAQLS 1583
Cdd:PRK02224  413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVE 492

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1584 QKEQAAEHYKlQMEKAKTHYDAKKQQNQKLQEQLQD----LEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLT 1659
Cdd:PRK02224  493 EVEERLERAE-DLVEAEDRIERLEERREDLEELIAErretIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571

                         410       420
                  ....*....|....*....|..
gi 254675300 1660 AQVRSLEAQVAHADQQLRDLGK 1681
Cdd:PRK02224  572 EEVAELNSKLAELKERIESLER 593
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 660-874 7.21e-04

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 44.07  E-value: 7.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   660 QRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKItkgslEEEKRRAADALKEQQCRATEMEAESRS 739
Cdd:TIGR02794   66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ-----AEEKQKQAEEAKAKQAAEAKAKAEAEA 140

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   740 LMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRfEARQQEEA 819
Cdd:TIGR02794  141 ERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAA-KAEAEAAA 219

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 254675300   820 RYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQ 874
Cdd:TIGR02794  220 AAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDKYAAIIQQAIQQ 274
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1534-1643 7.69e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 44.46  E-value: 7.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1534 EELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKL 1613
Cdd:COG2433   388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREI 467

                          90       100       110
                  ....*....|....*....|....*....|
gi 254675300 1614 QEQLQDLEELQKENKELRSEAERLGRELQQ 1643
Cdd:COG2433   468 SRLDREIERLERELEEERERIEELKRKLER 497
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1278-1644 7.84e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.67  E-value: 7.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1278 RAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELL 1357
Cdd:PRK03918  162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1358 PAKhlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERaaqqLRAEKASYAEQLSMLK 1437
Cdd:PRK03918  242 ELE----KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK----LSEFYEEYLDELREIE 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1438 KAHGLLAEENRGLGERanlgrqfleveLDQAREKyvqelaavrtdaETHLAEMRQEAQSTSRELEVMTAK---YEGAKVK 1514
Cdd:PRK03918  314 KRLSRLEEEINGIEER-----------IKELEEK------------EERLEELKKKLKELEKRLEELEERhelYEEAKAK 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1515 vLEERQRFQEERQKLTaqVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQ-----LSQKEQAA 1589
Cdd:PRK03918  371 -KEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTE 447

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1590 EHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQA 1644
Cdd:PRK03918  448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502
PRK09039 PRK09039
peptidoglycan -binding protein;
504-674 7.94e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 43.80  E-value: 7.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  504 LNATLQQRDQELASLKEQAkkeqAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkeqqleeAAKEQEatrQDHAQQLAIVA 583
Cdd:PRK09039   44 LSREISGKDSALDRLNSQI----AELADLLSLERQGNQDLQDSVANLRASL---------SAAEAE---RSRLQALLAEL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  584 EAREASLRERDTarqqletvekEKDAKLESLQQQlqaanDARDNAQTSVTQAQQekAELSQKIGELHACIEASHQEQRQV 663
Cdd:PRK09039  108 AGAGAAAEGRAG----------ELAQELDSEKQV-----SARALAQVELLNQQI--AALRRQLAALEAALDASEKRDRES 170

                         170
                  ....*....|.
gi 254675300  664 QARVTELEAQL 674
Cdd:PRK09039  171 QAKIADLGRRL 181
PLN02939 PLN02939
transferase, transferring glycosyl groups
 357-563 8.21e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 44.51  E-value: 8.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  357 QARLE--NELSTALQDKKCLEEKNEILQGKLS---------------------QLEDQATRLQESPAPEKGEVLGDALQL 413
Cdd:PLN02939  149 QARLQalEDLEKILTEKEALQGKINILEMRLSetdariklaaqekihveileeQLEKLRNELLIRGATEGLCVHSLSKEL 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  414 DTLKQEAAKLATDNTQLQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQ 493
Cdd:PLN02939  229 DVLKEENMLLKDDIQFLKAELIEVA-ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQD 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  494 LTAQLTSMTGLNATLQQRDQEL--------ASLKE-QAKKEQAQMLQTMQEQEQAAQG-LRQQVEQLSSSLKLKEQQLEE 563
Cdd:PLN02939  308 LLDRATNQVEKAALVLDQNQDLrdkvdkleASLKEaNVSKFSSYKVELLQQKLKLLEErLQASDHEIHSYIQLYQESIKE 387
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
 402-574 8.49e-04

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 43.95  E-value: 8.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   402 EKGEVLgdaLQLDTLKQEAAKLATDNTQLQTRvetlecergKQEAQLLAERSRFE-------DEKQQLASLIADLQSSVS 474
Cdd:pfam00529   43 KAGDVL---FQLDPTDYQAALDSAEAQLAKAQ---------AQVARLQAELDRLQaleselaISRQDYDGATAQLRAAQA 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   475 NLSQAKEELEQA-SQAQGAQLTAQLTSMTGlnATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSS 553
Cdd:pfam00529  111 AVKAAQAQLAQAqIDLARRRVLAPIGGISR--ESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSG 188

                          170       180
                   ....*....|....*....|.
gi 254675300   554 LklkEQQLEEAAKEQEATRQD 574
Cdd:pfam00529  189 A---QLQIAEAEAELKLAKLD 206
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 994-1213 8.74e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.98  E-value: 8.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  994 ARLTQERGQAQADLAQEKAAKAELEMR---LQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKEL 1070
Cdd:COG4942    23 AEAEAELEQLQQEIAELEKELAALKKEekaLLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1071 QQTLEQLKIQLVKKEK-EHPAGGASGEDASGPGTQSETAGK-TDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKS 1148
Cdd:COG4942   103 KEELAELLRALYRLGRqPPLALLLSPEDFLDAVRRLQYLKYlAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1149 ERACR-------AEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQ 1213
Cdd:COG4942   183 LEEERaalealkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 516-638 9.34e-04

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 44.43  E-value: 9.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  516 ASLKEQAKKeqaqmlqtMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQlaIVAEAR-EASLRERD 594
Cdd:PRK00409  523 ASLEELERE--------LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ--AIKEAKkEADEIIKE 592

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 254675300  595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE 638
Cdd:PRK00409  593 LRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
PRK12705 PRK12705
hypothetical protein; Provisional
 614-777 9.74e-04

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 43.93  E-value: 9.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  614 LQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhaCIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:PRK12705   25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKEL--LLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDN 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  694 LQEQLRALEESLKITKGSLEEEKRRAADALKEqqcRATEMEAESRSLMEQreREQKELEQEKAgrkgleARIQQLEEAHQ 773
Cdd:PRK12705  103 LENQLEEREKALSARELELEELEKQLDNELYR---VAGLTPEQARKLLLK--LLDAELEEEKA------QRVKKIEEEAD 171


                  ....
gi 254675300  774 AETE 777
Cdd:PRK12705  172 LEAE 175
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1527-1679 1.02e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.99  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1527 QKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTH--YD 1604
Cdd:COG1579    13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYE 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300 1605 AKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQaglktkEAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1679
Cdd:COG1579    93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEA------ELAELEAELEEKKAELDEELAELEAELEEL 161
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 850-1120 1.03e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 44.44  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  850 SEGQpgQQQSQLAQlHASLAKAIQQVQEKEVRA-----------QKLVDDLSALQEKMAATNKEVACLKTLVLKAG--EQ 916
Cdd:NF012221 1538 SESS--QQADAVSK-HAKQDDAAQNALADKERAeadrqrleqekQQQLAAISGSQSQLESTDQNALETNGQAQRDAilEE 1614

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  917 QETASLELLKEPPR-AANRASDQLGEQQGRPFSsTHAAVKAMEREAEQM-------GGELERLRAALIKSQGQQQEERGQ 988
Cdd:NF012221 1615 SRAVTKELTTLAQGlDALDSQATYAGESGDQWR-NPFAGGLLDRVQEQLddakkisGKQLADAKQRHVDNQQKVKDAVAK 1693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  989 QEREVARLTQERGQAQADLAQekaAKAELEMRLQNTLNEQRVefAALQEALAHALTEKegtdqelAKLRGQEAAQRTELK 1068
Cdd:NF012221 1694 SEAGVAQGEQNQANAEQDIDD---AKADAEKRKDDALAKQNE--AQQAESDANAAAND-------AQSRGEQDASAAENK 1761

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675300 1069 ELQQTLEQLKIQLVKKEKEHPAgGASGEDASGPGTQSETAGKTD-APGPELQA 1120
Cdd:NF012221 1762 ANQAQADAKGAKQDESDKPNRQ-GAAGSGLSGKAYSVEGVAEPGsHINPDSPA 1813
mukB PRK04863
chromosome partition protein MukB;
298-564 1.07e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 44.18  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  298 QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQ---GAFNDLIEEHskasqeWAEKQARLENELSTALQDKKCL 374
Cdd:PRK04863  840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNrllPRLNLLADET------LADRVEEIREQLDEAEEAKRFV 913

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  375 EEKneilQGKLSQLEDQATRLQESP---APEKGEVLGDALQLDTLKQ------------------EAAKLATDNT----Q 429
Cdd:PRK04863  914 QQH----GNALAQLEPIVSVLQSDPeqfEQLKQDYQQAQQTQRDAKQqafaltevvqrrahfsyeDAAEMLAKNSdlneK 989

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEqasqaqgaQLTAQLTSmtGLNATLQ 509
Cdd:PRK04863  990 LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQ--------DLGVPADS--GAEERAR 1059

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  510 QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEA 564
Cdd:PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
 1211-1640 1.12e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 43.96  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1211 RGQQEAERKSS-LISSLEEEVSilnrQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSAL--- 1286
Cdd:pfam05557   27 RARIELEKKASaLKRQLDRESD----RNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLada 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1287 REEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqql 1366
Cdd:pfam05557  103 REVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRI---------- 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1367 qaeqaaaekrfrEELEQSKQAAGGLQAELMRAQRELGelgslrqKIVEQERAAQQLRAEKasyaEQLSMLKKAHGLLAEE 1446
Cdd:pfam05557  173 ------------KELEFEIQSQEQDSEIVKNSKSELA-------RIPELEKELERLREHN----KHLNENIENKLLLKEE 229

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1447 NRGLgeRANLGRQ--------FLEVELdqarEKYVQELAAVRTDAETHLAEMR-------QEAQSTSRELEVMTAKYEGA 1511
Cdd:pfam05557  230 VEDL--KRKLEREekyreeaaTLELEK----EKLEQELQSWVKLAQDTGLNLRspedlsrRIEQLQQREIVLKEENSSLT 303

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1512 KVKVLEERQR--FQEERQKLTAQVEELSKKLTEHD-QASKVQQQKLKAFQAQRG-------------------------- 1562
Cdd:pfam05557  304 SSARQLEKARreLEQELAQYLKKIEDLNKKLKRHKaLVRRLQRRVLLLTKERDGyrailesydkeltmsnyspqllerie 383

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1563 ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQL--QDLEELQKENKELRSEAERLGRE 1640
Cdd:pfam05557  384 EAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYskEEVDSLRRKLETLELERQRLREQ 463
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 610-788 1.13e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.99  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  610 KLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKtterekvvQ 689
Cdd:COG1579    11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ--------L 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  690 EKAQLQEQLRALEESLKitkgSLEEEKRRAADALKEqqcratemeaesrsLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:COG1579    83 GNVRNNKEYEALQKEIE----SLKRRISDLEDEILE--------------LMERIEELEEELAELEAELAELEAELEEKK 144

                         170
                  ....*....|....*....
gi 254675300  770 EAHQAETEALRHELAEATA 788
Cdd:COG1579   145 AELDEELAELEAELEELEA 163
mukB PRK04863
chromosome partition protein MukB;
1118-1679 1.13e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 44.18  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1118 LQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKaLETLQGQLEEKARELGHNQAASASAQRELQALRAKAQD 1197
Cdd:PRK04863  309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA 387

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1198 HSKAEEEWKAQVARGQQ---EAERKSS----LISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQK---LEERLRL 1267
Cdd:PRK04863  388 AEEEVDELKSQLADYQQaldVQQTRAIqyqqAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEllsLEQKLSV 467

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1268 L-----QVETASNSARAA----ERSSALREEVQSLREeVEKQRVVSENS----------RQELASQAeRAEELGQELKAW 1328
Cdd:PRK04863  468 AqaahsQFEQAYQLVRKIagevSRSEAWDVARELLRR-LREQRHLAEQLqqlrmrlselEQRLRQQQ-RAERLLAEFCKR 545

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1329 QEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGE---- 1404
Cdd:PRK04863  546 LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEefed 625

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1405 ---LGSLRQKIVEQERAAQQ----LRAEKASYAEQLSMLKKAHGLLAEENRGLGERAN---LGRQFLEVELDQAreKYVQ 1474
Cdd:PRK04863  626 sqdVTEYMQQLLERERELTVerdeLAARKQALDEEIERLSQPGGSEDPRLNALAERFGgvlLSEIYDDVSLEDA--PYFS 703

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1475 EL------AAVRTD---AETHLAEMR-------------QEAQSTSRELEVMtakyEGAKVKVLEERQ----RFQEE--- 1525
Cdd:PRK04863  704 ALygparhAIVVPDlsdAAEQLAGLEdcpedlyliegdpDSFDDSVFSVEEL----EKAVVVKIADRQwrysRFPEVplf 779

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1526 ----RQKLTAQV-EELSKKLTEHDQAS----KVQQ--QKLKAFQAQ------RGESQQEVQRLQTQLNELQAQLSQKEQA 1588
Cdd:PRK04863  780 graaREKRIEQLrAEREELAERYATLSfdvqKLQRlhQAFSRFIGShlavafEADPEAELRQLNRRRVELERALADHESQ 859

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1589 AEHYKLQMEKAKTHYdakkQQNQKLQEQ--LQDLEELQKENKELRSE---AERLGRELQQAGLKTKEAEQ---TCRHLTA 1660
Cdd:PRK04863  860 EQQQRSQLEQAKEGL----SALNRLLPRlnLLADETLADRVEEIREQldeAEEAKRFVQQHGNALAQLEPivsVLQSDPE 935

                         650
                  ....*....|....*....
gi 254675300 1661 QVRSLEAQVAHADQQLRDL 1679
Cdd:PRK04863  936 QFEQLKQDYQQAQQTQRDA 954
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
929-1344 1.13e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.99  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  929 PRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALikSQGQQQEERGQQEREVARLTQERGQAQADLA 1008
Cdd:COG4717    65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL--EELREELEKLEKLLQLLPLYQELEALEAELA 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1009 QEKAAKAELEMR------LQNTLNEQRVEFAALQEALAHALTEK--------EGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:COG4717   143 ELPERLEELEERleelreLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEEL 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1075 EQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRA 1154
Cdd:COG4717   223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1155 EQDK-----ALETLQGQ-LEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEE 1228
Cdd:COG4717   303 EAEElqalpALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1229 EVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETAsnsARAAERSSALREEVQSLREEVEK--QRVVSEN 1306
Cdd:COG4717   383 DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE---EELEEELEELEEELEELEEELEElrEELAELE 459

                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 254675300 1307 SRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL 1344
Cdd:COG4717   460 AELEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 460-621 1.19e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.60  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  460 QQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQA 539
Cdd:COG1579    13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  540 AqgLRQQVEqlssSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQ 619
Cdd:COG1579    93 A--LQKEIE----SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166


                  ..
gi 254675300  620 AA 621
Cdd:COG1579   167 EL 168
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 669-817 1.19e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.60  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  669 ELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQRERE- 747
Cdd:COG1579    14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEa 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  748 -QKELEQEKAGRKGLEARIQQLE---EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQE 817
Cdd:COG1579    94 lQKEIESLKRRISDLEDEILELMeriEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
TOPEUc smart00435
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ...
 1595-1678 1.53e-03

DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras


Pssm-ID: 214661 [Multi-domain]  Cd Length: 391  Bit Score: 43.11  E-value: 1.53e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   1595 QMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQ 1674
Cdd:smart00435  278 SMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357


                    ....
gi 254675300   1675 QLRD 1678
Cdd:smart00435  358 QATD 361
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
 569-761 1.55e-03

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 43.45  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   569 EATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAK---LESLQQQLQAANDARDNAQTSVTQAQQEKAELSQK 645
Cdd:pfam05262  184 EALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKqidADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   646 igelhacieashqeqrqvqARVTEleaqlKAEQQKTTEREKVVQEKAQlQEQLRALEESLKitkgsleeEKRRAADALKe 725
Cdd:pfam05262  264 -------------------ADTSS-----PKEDKQVAENQKREIEKAQ-IEIKKNDEEALK--------AKDHKAFDLK- 309

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 254675300   726 QQCRATEMEAESRSLMEQRERE------QKELEQEKAGRKGL 761
Cdd:pfam05262  310 QESKASEKEAEDKELEAQKKREpvaedlQKTKPQVEAQPTSL 351
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
 669-817 1.64e-03

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 42.66  E-value: 1.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   669 ELEAQLKAEQQKTTEREKVVQEKAQLQEqlrALEESLKITKGSLEEEKRraadALKEQQCRATEMEAESRSLMEQREREQ 748
Cdd:pfam02841  159 KLEAKYNQVPRKGVKAEEVLQEFLQSKE---AVEEAILQTDQALTAKEK----AIEAERAKAEAAEAEQELLREKQKEEE 231

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300   749 KELEQEKagrKGLEARIQQLEEAHQAETEALRHELaEATASQHRAESecERLIRevESRQKRFEARQQE 817
Cdd:pfam02841  232 QMMEAQE---RSYQEHVKQLIEKMEAEREQLLAEQ-ERMLEHKLQEQ--EELLK--EGFKTEAESLQKE 292
COG5022 COG5022
Myosin heavy chain [General function prediction only];
1450-1644 1.67e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 43.53  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1450 LGERANLGRQFLEVELDQAREKYVQELAavrtDAETHLaemrQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKL 1529
Cdd:COG5022   851 FGRSLKAKKRFSLLKKETIYLQSAQRVE----LAERQL----QELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIEN 922

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1530 TAQVEELSKKLTEHDQASKVQQQKLKAFQaqrgeSQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ 1609
Cdd:COG5022   923 LEFKTELIARLKKLLNNIDLEEGPSIEYV-----KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNF 997

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 254675300 1610 NQKLQEQLQDLEELQKENKELRSEAERLGrELQQA 1644
Cdd:COG5022   998 KKELAELSKQYGALQESTKQLKELPVEVA-ELQSA 1031
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1004-1637 1.69e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 43.67  E-value: 1.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1004 QADLAQEKAAKAELE------MRLQNTLNEQRVEFAALQEALAHALTEKEGTDQEL-AKLRGQEAAQRTELKELQQTLEQ 1076
Cdd:pfam12128  247 QQEFNTLESAELRLShlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrDELNGELSAADAAVAKDRSELEA 326

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1077 LKIQLVKKEKEHpAGGASGEDASGPGTQSET-------AGKTDAPGPELQALRAEISKLeqqCQQQQQQVEGLTHSLKSE 1149
Cdd:pfam12128  327 LEDQHGAFLDAD-IETAAADQEQLPSWQSELenleerlKALTGKHQDVTAKYNRRRSKI---KEQNNRDIAGIKDKLAKI 402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1150 RACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAK----AQDHSKAEEEWKAQVARGQQEAERKSSLISS 1225
Cdd:pfam12128  403 REARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGelklRLNQATATPELLLQLENFDERIERAREEQEA 482

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1226 LEEEVSILNRQVLEKEGESKELKRlvvAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKqrVVSe 1305
Cdd:pfam12128  483 ANAEVERLQSELRQARKRRDQASE---ALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGK--VIS- 556

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1306 nsrQELASQAERAEELGQELKAWQEKFFQKEQALSALQLE--HTSTQALVSELLPAKhlcqQLQAEQAAAEKRFREELEQ 1383
Cdd:pfam12128  557 ---PELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPewAASEEELRERLDKAE----EALQSAREKQAAAEEQLVQ 629

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1384 SKQAAGGLQAELMRAQREL-----------GELGSLRQKIVEQERAAQQLRAEK-ASYAEQLSMLKKAHGLLAEENRG-- 1449
Cdd:pfam12128  630 ANGELEKASREETFARTALknarldlrrlfDEKQSEKDKKNKALAERKDSANERlNSLEAQLKQLDKKHQAWLEEQKEqk 709

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1450 --LGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQEaqsTSRELevmtakyegAKVKVLEER-QRFQEER 1526
Cdd:pfam12128  710 reARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETW---YKRDL---------ASLGVDPDViAKLKREI 777

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1527 QKLTAQVEELSKKLTEHDQASKVQQ----QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTH 1602
Cdd:pfam12128  778 RTLERKIERIAVRRQEVLRYFDWYQetwlQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857

                          650       660       670
                   ....*....|....*....|....*....|....*
gi 254675300  1603 YDAKKQQNQKLQEQLQDLEELQKENKELRSEAERL 1637
Cdd:pfam12128  858 LSENLRGLRCEMSKLATLKEDANSEQAQGSIGERL 892
PRK11281 PRK11281
mechanosensitive channel MscK;
612-790 1.78e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 43.75  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  612 ESLQQQLQAANDARD------NAQTSVTQAQ---QEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTT 682
Cdd:PRK11281   39 ADVQAQLDALNKQKLleaedkLVQQDLEQTLallDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  683 EREKVVQEKAQLQEQLRALEE---------SLKITKGSLEEekrRAADALKEQQCRATE--------------------- 732
Cdd:PRK11281  119 STLSLRQLESRLAQTLDQLQNaqndlaeynSQLVSLQTQPE---RAQAALYANSQRLQQirnllkggkvggkalrpsqrv 195

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  733 -MEAESRSLMEQREREQKELE-----QE--KAGRKGLEARIQQLEEAHQAETEAL---RHELAEATASQ 790
Cdd:PRK11281  196 lLQAEQALLNAQNDLQRKSLEgntqlQDllQKQRDYLTARIQRLEHQLQLLQEAInskRLTLSEKTVQE 264
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 267-491 1.81e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 1.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  267 AASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEH 346
Cdd:COG4942    13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  347 SKASQEWAEKQARLENELSTAL--------------QDKKCLEEKNEILQGKLSQLEDQATRLQEspapEKGEVLGDALQ 412
Cdd:COG4942    93 AELRAELEAQKEELAELLRALYrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRA----DLAELAALRAE 168

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  413 LDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4942   169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
MreC COG1792
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ...
 1601-1662 1.82e-03

Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 441397  Cd Length: 282  Bit Score: 42.56  E-value: 1.82e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 254675300 1601 THYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLgRELqqagLKTKEAEQTcRHLTAQV 1662
Cdd:COG1792    68 RSLFNLREENERLKEENAELRAELQRLEELEAENARL-REL----LDLKERLDY-KFVAAEV 123
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 609-740 2.06e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 43.40  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  609 AKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacieashqeqrqvQARVTELEAQLKAEQQKTTEREKvv 688
Cdd:PRK11448  149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAEL--------------EEKQQELEAQLEQLQEKAAETSQ-- 212

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254675300  689 QEKAQLQEQLRALEESLKITkgslEEEKRRAADalkeQQCRATEMEAESRSL 740
Cdd:PRK11448  213 ERKQKRKEITDQAAKRLELS----EEETRILID----QQLRKAGWEADSKTL 256
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 1552-1740 2.07e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.17  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1552 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQaaehyKLQMEKAKThydakkqqnQKLQEQLQDLeeLQKENKELR 1631
Cdd:PRK06975  357 QRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDG-----KLADAQSAQ---------QALEQQYQDL--SRNRDDWMI 420

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1632 SEAERLgreLQQAGLKTkeaeqtcrHLTAQVRSLEAQVAHADQQLRDLGKFQVAT---------DALKSrepqvKPQLDL 1702
Cdd:PRK06975  421 AEVEQM---LSSASQQL--------QLTGNVQLALIALQNADARLATSDSPQAVAvrkaiaqdiERLKA-----APSADL 484

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 254675300 1703 S------------IDSLDLSLEEGTPCSVASKLPRTQPDGTSVPGEPASP 1740
Cdd:PRK06975  485 TglaiklddaiakIDALPLSGEALPPHATMAAAPAAAAAAAAAAAAAGEP 534
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1117-1341 2.17e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 2.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG4942    28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1197 DH----SKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:COG4942   108 ELlralYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300 1273 ASNSARAAERSSALREEVQSLREEvekqrvvsensRQELASQAERAEELGQELKAWQEKFFQKEQALSA 1341
Cdd:COG4942   188 AALEALKAERQKLLARLEKELAEL-----------AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
412-717 2.20e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.58  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQaQG 491
Cdd:COG4372    32 QLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE-EA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  492 AQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkeQQLEEAAKEQEAT 571
Cdd:COG4372   111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL----QALSEAEAEQALD 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHA 651
Cdd:COG4372   187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300  652 CIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:COG4372   267 ILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELAL 332
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 282-655 2.44e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.57  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   282 KNESLTVRLHETLKQ----CQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQ 357
Cdd:pfam07888   28 RAELLQNRLEECLQEraelLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   358 aRLENELStalQDKKCLEEKNEILQGKLSQLEDQATRLQEspapekgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETL 437
Cdd:pfam07888  108 -ASSEELS---EEKDALLAQRAAHEARIRELEEDIKTLTQ-------RVLERETELERMKERAKKAGAQRKEEEAERKQL 176

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   438 ECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQgAQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:pfam07888  177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKE-AENEALLEELRSLQERLNASERKVEG 255

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLS-SSLKLKEQQlEEAAKEQEATRQ------DHAQQLAIVAEAREASL 590
Cdd:pfam07888  256 LGEELSSMAAQRDRTQAELHQARLQAAQLTLQLAdASLALREGR-ARWAQERETLQQsaeadkDRIEKLSAELQRLEERL 334

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300   591 RERDTARQQLET-VEKEKDAKLESL---QQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEA 655
Cdd:pfam07888  335 QEERMEREKLEVeLGREKDCNRVQLsesRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLET 403
HOOK pfam05622
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ...
 352-863 2.49e-03

HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.


Pssm-ID: 461694 [Multi-domain]  Cd Length: 528  Bit Score: 42.75  E-value: 2.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   352 EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDqatrLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQ 431
Cdd:pfam05622   11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLES----GDDSGTPGGKKYLLLQKQLEQLQEENFRLETARDDYR 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   432 TRVETLECE----------------------------------RGKQEAQLLAERSRFEDE---KQQLASLIADLQSSVS 474
Cdd:pfam05622   87 IKCEELEKEvlelqhrneeltslaeeaqalkdemdilressdkVKKLEATVETYKKKLEDLgdlRRQVKLLEERNAEYMQ 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   475 NLSQAKEELEQASQAQGaQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ---AAQGLRQQVEQLS 551
Cdd:pfam05622  167 RTLQLEEELKKANALRG-QLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLEALQKEKERliiERDTLRETNEELR 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   552 -SSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:pfam05622  246 cAQLQQAELSQADALLSPSSDPGDNLAAEIMPAEIREKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELET 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   631 SVTQAQQEKAELSQKIGELhacieashQEQRQVQARVTELEAQLKaeqqktterekvvQEKAQLQEQLRALEESLKITKG 710
Cdd:pfam05622  326 QNRLANQRILELQQQVEEL--------QKALQEQGSKAEDSSLLK-------------QKLEEHLEKLHEAQSELQKKKE 384

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   711 SLEEekrRAADALKEQQCRATEMEAESRS----LMEQREREQKELEQEKAGRKGLEARIQQleeAHQAETEALRHELAEA 786
Cdd:pfam05622  385 QIEE---LEPKQDSNLAQKIDELQEALRKkdedMKAMEERYKKYVEKAKSVIKTLDPKQNP---ASPPEIQALKNQLLEK 458

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300   787 TASQHRAESECE--RLIREVEsrqkrfearqqeearygamfqEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQ 863
Cdd:pfam05622  459 DKKIEHLERDFEksKLQREQE---------------------EKLIVTAWYNMGMALHRKAIEERLAGLSSPGQSFLAR 516
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
576-703 2.52e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 42.34  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  576 AQQLAIVAEAREASLRERDTARQQLETVEkekdAKLESLQQQLQAANDARDNAQT-----SVTQAQQEKAElsqkigelh 650
Cdd:COG1566    88 AEAQLAAAEAQLARLEAELGAEAEIAAAE----AQLAAAQAQLDLAQRELERYQAlykkgAVSQQELDEAR--------- 154

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675300  651 acieashQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEE 703
Cdd:COG1566   155 -------AALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAALAQ 200
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 632-771 2.60e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.89  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  632 VTQAQQEKAELSQKIGELhacIEASHQEQRQVQARVTELEaQLKAEQQKTteREKVVQEKAQLQEQLRALeeslkitkgs 711
Cdd:PRK00409  504 IEEAKKLIGEDKEKLNEL---IASLEELERELEQKAEEAE-ALLKEAEKL--KEELEEKKEKLQEEEDKL---------- 567

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  712 LEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAgRKGLEARIQQLEEA 771
Cdd:PRK00409  568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEA-RKRLNKANEKKEKK 626
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1392-1590 2.66e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 42.70  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1392 QAELMRAQREL-GELGSLRQKIVEQERAAQQLRA---------EKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFL 1461
Cdd:COG3206   170 REEARKALEFLeEQLPELRKELEEAEAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1462 EVELDQARE----KYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRF----QEERQKLTAQV 1533
Cdd:COG3206   250 GSGPDALPEllqsPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlaslEAELEALQARE 329

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 254675300 1534 EELSKKLTEHDQASKVQQQKlkafQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAE 1590
Cdd:COG3206   330 ASLQAQLAQLEARLAELPEL----EAELRRLEREVEVARELYESLLQRLEEARLAEA 382
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 621-823 3.10e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  621 ANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQL-KAEQQKTTEREKVVQEKAQLQEQLR 699
Cdd:COG3883    14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdKLQAEIAEAEAEIEERREELGERAR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  700 AL-EESLKITKGSLEEEKRRAADALKEQQCRATEMEAEsRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEA 778
Cdd:COG3883    94 ALyRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 254675300  779 LRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGA 823
Cdd:COG3883   173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 566-771 3.17e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 42.10  E-value: 3.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  566 KEQEATRQDHAQQLAIVAEAREASLRERDTARQQ-LETVEKEKDAKLESLQQQLQAANDARdnaqtsvtQAQQEKAELSQ 644
Cdd:PRK09510   68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQErLKQLEKERLAAQEQKKQAEEAAKQAA--------LKQKQAEEAAA 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  645 KIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKitKGSLEEEKRRAADALK 724
Cdd:PRK09510  140 KAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK--KAEAEAKKKAAAEAKK 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 254675300  725 EQqcratemEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:PRK09510  218 KA-------AAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 615-789 3.19e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 42.10  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  615 QQQLQAanDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQE--QRQVQARVTELEAQLKAEQQKTTEREKVVQE-- 690
Cdd:PRK09510   67 QQQQQK--SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKErlAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAaa 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  691 -KAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:PRK09510  145 aKAKAEAEAKRAAAAAKKAA---AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221

                         170       180
                  ....*....|....*....|
gi 254675300  770 EAHQAETEALRHELAEATAS 789
Cdd:PRK09510  222 EAKAAAAKAAAEAKAAAEKA 241
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 412-635 3.44e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQg 491
Cdd:COG3883    38 ELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLLGSESFSD- 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  492 aqLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG3883   117 --FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA 194

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675300  572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQA 635
Cdd:COG3883   195 EAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258
PRK12704 PRK12704
phosphodiesterase; Provisional
 1503-1653 3.45e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1503 VMTAKYEGAK---VKVLEERQRFQEE--RQKLTAQVEELSKKLTEHDQASKvqqqklkafqaqrgESQQEVQRLQTQLNE 1577
Cdd:PRK12704   28 IAEAKIKEAEeeaKRILEEAKKEAEAikKEALLEAKEEIHKLRNEFEKELR--------------ERRNELQKLEKRLLQ 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300 1578 LQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEelQKENKELrseaERLgrelqqAGLKTKEAEQ 1653
Cdd:PRK12704   94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI--EEQLQEL----ERI------SGLTAEEAKE 157
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 584-823 3.81e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  584 EAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV 663
Cdd:COG3883    19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  664 QARVTELEAQLKAEQ-----QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESR 738
Cdd:COG3883    99 GGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  739 SLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEE 818
Cdd:COG3883   179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258


                  ....*
gi 254675300  819 ARYGA 823
Cdd:COG3883   259 AGSAG 263
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 456-564 4.04e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 42.25  E-value: 4.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  456 EDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKeqaqmlqtmQE 535
Cdd:PRK11448  141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE---------TS 211

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 254675300  536 QEQAAQgLRQQVEQLSSSLKLKE--------QQLEEA 564
Cdd:PRK11448  212 QERKQK-RKEITDQAAKRLELSEeetrilidQQLRKA 247
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 1261-1584 4.05e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.19  E-value: 4.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1261 LEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSEnSRQELASQAERAEELGQELKAWQEKFFQKEQALS 1340
Cdd:pfam07888   40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAE-LKEELRQSREKHEELEEKYKELSASSEELSEEKD 118

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1341 ALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAG-------GLQAELMRAQREL----GELGSLR 1409
Cdd:pfam07888  119 ALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKeeeaerkQLQAKLQQTEEELrslsKEFQELR 198

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1410 QKIVEQERAAQQLRAEKASYAEQLSMLKK---AHGLLAEENRGLGERANLGRQFLEveldqAREKYVQELAAVRTDAETH 1486
Cdd:pfam07888  199 NSLAQRDTQVLQLQDTITTLTQKLTTAHRkeaENEALLEELRSLQERLNASERKVE-----GLGEELSSMAAQRDRTQAE 273

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1487 LAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELS---KKLTEHDQASKVQQQKLKAFQA---- 1559
Cdd:pfam07888  274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSaelQRLEERLQEERMEREKLEVELGrekd 353

                          330       340
                   ....*....|....*....|....*....
gi 254675300  1560 ----QRGESQQEVQRLQTQLNELQAQLSQ 1584
Cdd:pfam07888  354 cnrvQLSESRRELQELKASLRVAQKEKEQ 382
mukB PRK04863
chromosome partition protein MukB;
486-823 4.22e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.25  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  486 ASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT--MQEQEQAAQGLRQQVeqlssslklkeQQLEE 563
Cdd:PRK04863  783 AREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVafEADPEAELRQLNRRR-----------VELER 851

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  564 AAKEQEATRQDHAQQLaivaeareaslrerDTARQQLETVEK-EKDAKL---ESLQQQLQAANDARDNAQTSVTQAQQEK 639
Cdd:PRK04863  852 ALADHESQEQQQRSQL--------------EQAKEGLSALNRlLPRLNLladETLADRVEEIREQLDEAEEAKRFVQQHG 917

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  640 AELSQkIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKA--------QLQEQLRALEESLKITKGS 711
Cdd:PRK04863  918 NALAQ-LEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaEMLAKNSDLNEKLRQRLEQ 996

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  712 LEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQ---KELEQEKA-----GRKGLEARIQQLEEAHQAETEALRHEL 783
Cdd:PRK04863  997 AEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRqmlQELKQELQdlgvpADSGAEERARARRDELHARLSANRSRR 1076

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 254675300  784 AEATASQHRAESECERLIREVESRQKrfEARQQEEARYGA 823
Cdd:PRK04863 1077 NQLEKQLTFCEAEMDNLTKKLRKLER--DYHEMREQVVNA 1114
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1012-1264 4.26e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 4.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1012 AAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpag 1091
Cdd:COG4942    16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---- 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1092 gasgedasgpgtqsetagkTDAPGPELQALRAEISKL--EQQCQQQQQQVEGLTHSLKSERACRAEQdkALETLQGQLEE 1169
Cdd:COG4942    92 -------------------IAELRAELEAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAVRRLQ--YLKYLAPARRE 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1170 KARELGHNQAASASAQRELQALRAKAQdhsKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKR 1249
Cdd:COG4942   151 QAEELRADLAELAALRAELEAERAELE---ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227

                         250
                  ....*....|....*
gi 254675300 1250 LVVAESEKSQKLEER 1264
Cdd:COG4942   228 LIARLEAEAAAAAER 242
mukB PRK04863
chromosome partition protein MukB;
1273-1668 4.26e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.25  E-value: 4.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1273 ASNSARAAERSSALREEVQSLREEVEKqrvvsenSRQELASQAERAEELGQELKAWQEkffqkeqALSALQLEHTST--- 1349
Cdd:PRK04863  271 AADYMRHANERRVHLEEALELRRELYT-------SRRQLAAEQYRLVEMARELAELNE-------AESDLEQDYQAAsdh 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1350 QALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERA--AQQLRAekA 1427
Cdd:PRK04863  337 LNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAldVQQTRA--I 414

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1428 SYAEQLSMLKKAHGLLaeenrglgeranlgrQFLEVELDQArEKYVQELAAvrtdaethlaemrQEAQSTSRELEvmtak 1507
Cdd:PRK04863  415 QYQQAVQALERAKQLC---------------GLPDLTADNA-EDWLEEFQA-------------KEQEATEELLS----- 460

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1508 yegakvkvLEERQRFQEERQKLTAQVEELSKKL---TEHDQASKVQQQKLKAFQAQRGESQQeVQRLQTQLNELQaQLSQ 1584
Cdd:PRK04863  461 --------LEQKLSVAQAAHSQFEQAYQLVRKIageVSRSEAWDVARELLRRLREQRHLAEQ-LQQLRMRLSELE-QRLR 530

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1585 KEQAAEHyklqmekakthydAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRS 1664
Cdd:PRK04863  531 QQQRAER-------------LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597


                  ....
gi 254675300 1665 LEAQ 1668
Cdd:PRK04863  598 LAAR 601
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
 473-580 4.40e-03

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 41.64  E-value: 4.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   473 VSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASlkeqAKKEQAQMLQTM-QEQEQAAQGLRQQVEQLS 551
Cdd:TIGR04320  249 IPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAA----AQAALATAQKELaNAQAQALQTAQNNLATAQ 324

                           90       100
                   ....*....|....*....|....*....
gi 254675300   552 SSLKLKEQQLEEAAKEQEATRQDHAQQLA 580
Cdd:TIGR04320  325 AALANAEARLAKAKEALANLNADLAKKQA 353
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1166-1419 5.24e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 5.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:COG4942    21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1246 ELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRvvseNSRQELASQAERAEELGQEL 1325
Cdd:COG4942   101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAALRAELEAERAEL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1326 KAWQEKFFQKEQALSALQLEhtstqalvsellpakhlcqqlqaeQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGEL 1405
Cdd:COG4942   177 EALLAELEEERAALEALKAE------------------------RQKLLARLEKELAELAAELAELQQEAEELEALIARL 232

                         250
                  ....*....|....
gi 254675300 1406 GSLRQKIVEQERAA 1419
Cdd:COG4942   233 EAEAAAAAERTPAA 246
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 1574-1699 5.44e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 41.74  E-value: 5.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1574 QLNELQAQLSQKEQAAEhyklqmEKAKTHyDAKKQQNQKLQEQLQD-LEELQKENKELRSEAErlgRELQQAglkTKEAE 1652
Cdd:PRK00409  517 KLNELIASLEELERELE------QKAEEA-EALLKEAEKLKEELEEkKEKLQEEEDKLLEEAE---KEAQQA---IKEAK 583

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 254675300 1653 QTCRHLTAQVRSLEAQvAHADQQLRDLGKFQVA-TDALKSREPQVKPQ 1699
Cdd:PRK00409  584 KEADEIIKELRQLQKG-GYASVKAHELIEARKRlNKANEKKEKKKKKQ 630
PTZ00491 PTZ00491
major vault protein; Provisional
 601-756 5.52e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 41.93  E-value: 5.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  601 ETVEKEKDAKLESLQQQLQAANDARDNAQTSvtQAQQEKAELSQkigelhaciEASHQEQRQVqarvteLEAQLKAEQQK 680
Cdd:PTZ00491  636 QSVEPVDERTRDSLQKSVQLAIEITTKSQEA--AARHQAELLEQ---------EARGRLERQK------MHDKAKAEEQR 698

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300  681 TTEREkVVQEKAQLQEQLRALEESLKITKGSLEEEkrRAADALKEQQCRATEMEAESRSLMEQREREQkELEQEKA 756
Cdd:PTZ00491  699 TKLLE-LQAESAAVESSGQSRAEALAEAEARLIEA--EAEVEQAELRAKALRIEAEAELEKLRKRQEL-ELEYEQA 770
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
1465-1685 5.53e-03

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 440263 [Multi-domain]  Cd Length: 555  Bit Score: 41.60  E-value: 5.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1465 LDQAREKYvQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKY---EGAKVKVLEErQRFQEERQKLtAQVEELSKKLT 1541
Cdd:COG0497   153 LEELLEEY-REAYRAWRALKKELEELRADEAERARELDLLRFQLeelEAAALQPGEE-EELEEERRRL-SNAEKLREALQ 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1542 E------------HDQASKVQQ--QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEH---------------- 1591
Cdd:COG0497   230 EalealsggeggaLDLLGQALRalERLAEYDPSLAELAERLESALIELEEAASELRRYLDSLEFdperleeveerlallr 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1592 -----YKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAglktkeaeqtcRHLTAQvrSLE 1666
Cdd:COG0497   310 rlarkYGVTVEELLAYAEELRAELAELENSDERLEELEAELAEAEAELLEAAEKLSAA-----------RKKAAK--KLE 376

                         250       260
                  ....*....|....*....|...
gi 254675300 1667 AQVAhadQQLRDLG----KFQVA 1685
Cdd:COG0497   377 KAVT---AELADLGmpnaRFEVE 396
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
443-780 5.73e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 5.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  443 KQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQA 522
Cdd:COG4372     3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  523 KKEQAQMLQTMQEQEQAaqglRQQVEQLSSSLKLKEQQLEEAAKEQEAtRQDHAQQLAIVAEAREASLRERDTARQQLET 602
Cdd:COG4372    83 EELNEQLQAAQAELAQA----QEELESLQEEAEELQEELEELQKERQD-LEQQRKQLEAQIAELQSEIAEREEELKELEE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  603 VEKEKDAKLESLQQQLQAANDARDNAQ--TSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQK 680
Cdd:COG4372   158 QLESLQEELAALEQELQALSEAEAEQAldELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  681 TTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:COG4372   238 LLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDAL 317

                         330       340
                  ....*....|....*....|
gi 254675300  761 LEARIQQLEEAHQAETEALR 780
Cdd:COG4372   318 LAALLELAKKLELALAILLA 337
PRK01156 PRK01156
chromosome segregation protein; Provisional
 274-816 5.92e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 41.81  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  274 SELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSfkvrefaNHLQQLQGAFNDLieehskASQEw 353
Cdd:PRK01156  183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM-------DDYNNLKSALNEL------SSLE- 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  354 aEKQARLENELSTALQDKKCLEEKNEilqgKLSQLEDQATRLQESPAPEKGEVLGDAL----QLDTLKQEAAKLATDNTQ 429
Cdd:PRK01156  249 -DMKNRYESEIKTAESDLSMELEKNN----YYKELEERHMKIINDPVYKNRNYINDYFkyknDIENKKQILSNIDAEINK 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  430 LQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIA---DLQSSVSNLSQAKEELEQASQAQ---GAQLTAQLTSMTG 503
Cdd:PRK01156  324 YHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGyemDYNSYLKSIESLKKKIEEYSKNIermSAFISEILKIQEI 402

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLS---------------SSLKLKEQQLEEAAKEQ 568
Cdd:PRK01156  403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeKSNHIINHYNEKKSRLE 482

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  569 EATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEkDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAEL-SQKIG 647
Cdd:PRK01156  483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINE-YNKIESARADLEDIKIKINELKDKHDKYEEIKNRYkSLKLE 561

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  648 ELhaciEASHQEQRQVQARVTELEaqLKAEQQKTTEREKVVQEkaqLQEQLRALEESLKITKGSLEEEKRRAADALKEQQ 727
Cdd:PRK01156  562 DL----DSKRTSWLNALAVISLID--IETNRSRSNEIKKQLND---LESRLQEIEIGFPDDKSYIDKSIREIENEANNLN 632

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  728 CRATEMEAESRsLMEQREREQKELEQEKAGRKGLEARIQQLE-EAHQAETE--ALRHELAEATASQHRAESECERLIREV 804
Cdd:PRK01156  633 NKYNEIQENKI-LIEKLRGKIDNYKKQIAEIDSIIPDLKEITsRINDIEDNlkKSRKALDDAKANRARLESTIEILRTRI 711

                         570
                  ....*....|..
gi 254675300  805 ESRQKRFEARQQ 816
Cdd:PRK01156  712 NELSDRINDINE 723
46 PHA02562
endonuclease subunit; Provisional
 1524-1690 6.46e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.54  E-value: 6.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1524 EERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQ---------AQLSQKEQAAEHYKL 1594
Cdd:PHA02562  227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKD 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1595 QMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQ 1674
Cdd:PHA02562  307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386

                         170       180
                  ....*....|....*....|....*..
gi 254675300 1675 QLRDLGK-----------FQVATDALK 1690
Cdd:PHA02562  387 ELDKIVKtkselvkekyhRGIVTDLLK 413
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 180-707 6.96e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.64  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   180 LEIQRIASSSSENNFLSGSPSSPMGDILQTPQFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAmmQQRIDHL 259
Cdd:pfam15921  278 VEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE--KQLVLAN 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   260 ALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQcqnLKTEKSQMDR----------KISQLSEENGDLSFKVREFA 329
Cdd:pfam15921  356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKE---LSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLE 432

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   330 NHLQQLQGAFNDLIEEHSKASQ---EWAEKQARLENEL-STALQDKKCLEE---KNEILQGKLSQLEDQATRLQESP--- 399
Cdd:pfam15921  433 ALLKAMKSECQGQMERQMAAIQgknESLEKVSSLTAQLeSTKEMLRKVVEEltaKKMTLESSERTVSDLTASLQEKErai 512

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   400 APEKGEVLGDALQLDTLKQEAAKLATDNTQL---QTRVETLECERGKQEAQLLAERSRFED-----------------EK 459
Cdd:pfam15921  513 EATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqhgrtagamqvEK 592

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   460 QQLASLIADLQSSVSNLSQAKEEleqaSQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQA 539
Cdd:pfam15921  593 AQLEKEINDRRLELQEFKILKDK----KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE 668

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   540 AQGLRQQVEQLSSSLKLKEQQLEEAA---KEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQ 616
Cdd:pfam15921  669 LNSLSEDYEVLKRNFRNKSEEMETTTnklKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQS 748

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   617 QLQAANDARDNAQTSVTQAQQEKAELSQKIG-------ELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ 689
Cdd:pfam15921  749 KIQFLEEAMTNANKEKHFLKEEKNKLSQELStvateknKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ 828

                          570
                   ....*....|....*...
gi 254675300   690 EKAQLQEQLRaLEESLKI 707
Cdd:pfam15921  829 RQEQESVRLK-LQHTLDV 845
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 1391-1643 7.36e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.57  E-value: 7.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1391 LQAELMRAQRELGELGSLRQKIvEQERAAQQLRAEKASYAEQLSMLKKAhgllAEENRGLGERANLGRQFLEVELDQARE 1470
Cdd:TIGR00606  797 FQMELKDVERKIAQQAAKLQGS-DLDRTVQQVNQEKQEKQHELDTVVSK----IELNRKLIQDQQEQIQHLKSKTNELKS 871

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1471 KYVQ--ELAAVRTDAETHLAEMRQEAQSTSRELEvmTAKYEGAKVKVLEERqrFQEERQKLTAQVEELSKKLTEHDQASK 1548
Cdd:TIGR00606  872 EKLQigTNLQRRQQFEEQLVELSTEVQSLIREIK--DAKEQDSPLETFLEK--DQQEKEELISSKETSNKKAQDKVNDIK 947

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1549 VQQQKLKAFQA------QRGESQQEVQRlQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQdLEE 1622
Cdd:TIGR00606  948 EKVKNIHGYMKdienkiQDGKDDYLKQK-ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT-LRK 1025

                          250       260
                   ....*....|....*....|.
gi 254675300  1623 LQKENKELRSEAERLGRELQQ 1643
Cdd:TIGR00606 1026 RENELKEVEEELKQHLKEMGQ 1046
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 636-918 7.42e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 7.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   636 QQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQE-KAQLQEQLRALEESLKITKgsLEE 714
Cdd:pfam17380  302 RQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEeRKRELERIRQEEIAMEISR--MRE 379

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   715 EKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQ----EKAGRKGLEAR---IQQLEEAHQAETEALRHELAEAT 787
Cdd:pfam17380  380 LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQkvemEQIRAEQEEARqreVRRLEEERAREMERVRLEEQERQ 459

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   788 ASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHAS 867
Cdd:pfam17380  460 QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAE 539

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 254675300   868 LAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQE 918
Cdd:pfam17380  540 EERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
 588-892 7.78e-03

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 41.17  E-value: 7.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   588 ASLRERDTArQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV--QA 665
Cdd:pfam05667  206 PSLLERNAA-ELAAAQEWEEEWNSQGLASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELlsSF 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   666 RVTELEAQLKAEQQKTTEREKVvqekaQLQEQLRALEESLKITKGSLEEekrraadaLKEQQcratemEAESRSLMEQRE 745
Cdd:pfam05667  285 SGSSTTDTGLTKGSRFTHTEKL-----QFTNEAPAATSSPPTKVETEEE--------LQQQR------EEELEELQEQLE 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   746 REQKELEQEKAGRKGLEARIQQLEEaHQAETEALRHELAEATASQHR-------AESECERLIREVESRQKRFE--ARQQ 816
Cdd:pfam05667  346 DLESSIQELEKEIKKLESSIKQVEE-ELEELKEQNEELEKQYKVKKKtldllpdAEENIAKLQALVDASAQRLVelAGQW 424

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675300   817 EEARygAMFQEQLMALKGEKTGQEVQEEaveihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:pfam05667  425 EKHR--VPLIEEYRALKEAKSNKEDESQ-----------RKLEEIKELREKIKEVAEEAKQKEELYKQLVAEYERL 487
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1417-1680 7.96e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 41.48  E-value: 7.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1417 RAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERanlgRQFLEVELDQAREKYVQELAAVRtdaethLAEMRQEAQS 1496
Cdd:COG3096   285 ERALELRRELFGARRQLAEEQYRLVEMARELEELSAR----ESDLEQDYQAASDHLNLVQTALR------QQEKIERYQE 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1497 TSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQK----------------------- 1553
Cdd:COG3096   355 DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRaiqyqqavqalekaralcglpdl 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1554 --------LKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKL---QMEKAKTHYDAKK------------QQN 1610
Cdd:COG3096   435 tpenaedyLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagEVERSQAWQTAREllrryrsqqalaQRL 514

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1611 QKLQEQLQDLEELQKENKELRSEAERLGrelQQAGLKTKEAEQtcrhLTAQVRSLEAQVAHADQQLRDLG 1680
Cdd:COG3096   515 QQLRAQLAELEQRLRQQQNAERLLEEFC---QRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAV 577
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 682-804 8.28e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 41.22  E-value: 8.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  682 TEREKVVQEKAQLQEQLRALEeslkITKGSLEEEKRRAADAlkeqqcRATEMEAESRSLMEQREREQKELEQEKAGRKGL 761
Cdd:COG0542   404 MEIDSKPEELDELERRLEQLE----IEKEALKKEQDEASFE------RLAELRDELAELEEELEALKARWEAEKELIEEI 473

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 254675300  762 EARIQQLEEAHQaETEALRHELAEATAsqhrAESECERLIREV 804
Cdd:COG0542   474 QELKEELEQRYG-KIPELEKELAELEE----ELAELAPLLREE 511
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
426-572 8.68e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 40.80  E-value: 8.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  426 DNTQLQTRVETLECERGKQEAQLLAERSRfEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtgln 505
Cdd:COG1566    77 DPTDLQAALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQ-------- 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675300  506 atlqqrdQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQ--QVEQLSSSLKLKEQQLEEAAKEQEATR 572
Cdd:COG1566   148 -------QELDEARAALDAAQAQLEAAQAQLAQAQAGLREeeELAAAQAQVAQAEAALAQAELNLARTT 209
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 1499-1643 8.86e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 40.39  E-value: 8.86e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   1499 RELEVMTAKYEgakvKVLEERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQK----LKAFQAQRGESQQEVQRLQTQ 1574
Cdd:smart00787  151 ENLEGLKEDYK----LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCdpteLDRAKEKLKKLLQEIMIKVKK 226

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300   1575 LNELQAQLSQKEQAAEhyklqmekakthydAKKQQNQKLQEQLQDLEELQKENKEL-RSEAERLGRELQQ 1643
Cdd:smart00787  227 LEELEEELQELESKIE--------------DLTNKKSELNTEIAEAEKKLEQCRGFtFKEIEKLKEQLKL 282
PRK11281 PRK11281
mechanosensitive channel MscK;
1034-1343 8.93e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 41.44  E-value: 8.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1034 ALQEALAHALTEKEGTDQ--ELAKLRGQEAAQRTELKELQQTLEQL-KIQLVKKEKEHPAGGASGEDASgpgTQSETAGK 1110
Cdd:PRK11281   27 ARAASNGDLPTEADVQAQldALNKQKLLEAEDKLVQQDLEQTLALLdKIDRQKEETEQLKQQLAQAPAK---LRQAQAEL 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1111 TDAPGPELQALRAEISKLEqqCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEkarelghNQAASASAQRELQA 1190
Cdd:PRK11281  104 EALKDDNDEETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER-------AQAALYANSQRLQQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1191 LRAKAQDhSKAEEEWKAQVARGQQEAErksslISSLEEEVSiLNRQVLEKEGESKELKRLVVAE-SEKSQKLEERLRLLQ 1269
Cdd:PRK11281  175 IRNLLKG-GKVGGKALRPSQRVLLQAE-----QALLNAQND-LQRKSLEGNTQLQDLLQKQRDYlTARIQRLEHQLQLLQ 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1270 veTASNSARAAErSSALREEVQSLREEVEKQR---VVSENSR-----QELASQAERAEELGQE---LKAWQEKFFQKEQA 1338
Cdd:PRK11281  248 --EAINSKRLTL-SEKTVQEAQSQDEAARIQAnplVAQELEInlqlsQRLLKATEKLNTLTQQnlrVKNWLDRLTQSERN 324


                  ....*....
gi 254675300 1339 L----SALQ 1343
Cdd:PRK11281  325 IkeqiSVLK 333
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 1517-1751 9.04e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.58  E-value: 9.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1517 EERQRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNElQAQLSQKEQAAEHYKLQM 1596
Cdd:COG3883    30 AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE-RARALYRSGGSVSYLDVL 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1597 EKAKTHYDA----------KKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLE 1666
Cdd:COG3883   109 LGSESFSDFldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1667 AQVAHADQQLRDLGKFQVATDALKSREPQVKPQLDLSIDSLDLSLEEGTPCSVASKLPRTQPDGTSVPGEPASPISQRLP 1746
Cdd:COG3883   189 AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAGAA 268


                  ....*
gi 254675300 1747 PKVES 1751
Cdd:COG3883   269 AGAAG 273
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 597-785 9.10e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 41.19  E-value: 9.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  597 RQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEK----------AELSQKIGELHA---------CIEASH 657
Cdd:PRK10929   29 TQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQqvidnfpklsAELRQQLNNERDeprsvppnmSTDALE 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  658 QEQRQVQARVTELEAQLKAEQQKTTE-REKVVQEKAQLQEQLRALEE------SLKITKGSLEEEKRRAADA-LKEQQCR 729
Cdd:PRK10929  109 QEILQVSSQLLEKSRQAQQEQDRAREiSDSLSQLPQQQTEARRQLNEierrlqTLGTPNTPLAQAQLTALQAeSAALKAL 188

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675300  730 ATEMEAESRSLMEQRE--REQKELEQEKAGRkgLEARIQ----QLEEAHQAETE-ALRH--ELAE 785
Cdd:PRK10929  189 VDELELAQLSANNRQElaRLRSELAKKRSQQ--LDAYLQalrnQLNSQRQREAErALESteLLAE 251
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
596-848 9.30e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 40.66  E-value: 9.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  596 ARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLK 675
Cdd:COG4372    11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  676 AEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEK 755
Cdd:COG4372    91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  756 AGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGE 835
Cdd:COG4372   171 QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250

                         250
                  ....*....|...
gi 254675300  836 KTGQEVQEEAVEI 848
Cdd:COG4372   251 LLEEVILKEIEEL 263
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1004-1311 9.33e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 9.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1004 QADLAQEKAAKA-ELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLV 1082
Cdd:pfam17380  298 QERLRQEKEEKArEVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRM 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1083 KKEKEhpaggasgedasgpgTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALEt 1162
Cdd:pfam17380  378 RELER---------------LQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLE- 441

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1163 lqgqlEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEW-KAQVARGQQEAERKSSLISSLEEEVSIL-----NRQ 1236
Cdd:pfam17380  442 -----EERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELeKEKRDRKRAEEQRRKILEKELEERKQAMieeerKRK 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  1237 VLEKEGESK-------ELKRLVVAESEKSQKLEERLRLLQVETASNSARAaeRSSALREEVQSLREEVEkqrvvSENSRQ 1309
Cdd:pfam17380  517 LLEKEMEERqkaiyeeERRREAEEERRKQQEMEERRRIQEQMRKATEERS--RLEAMEREREMMRQIVE-----SEKARA 589


                   ..
gi 254675300  1310 EL 1311
Cdd:pfam17380  590 EY 591
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 298-549 9.42e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 41.09  E-value: 9.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  298 QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQ---GAFNDLIEEHSkasqewAEKQARLENELSTALQDKKCL 374
Cdd:COG3096   839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNkllPQANLLADETL------ADRLEELREELDAAQEAQAFI 912

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  375 EEKNEilqgKLSQLEDQATRLQESPAPE---KGEVLGDALQLDTLKQ------------------EAAKLATDNT----Q 429
Cdd:COG3096   913 QQHGK----ALAQLEPLVAVLQSDPEQFeqlQADYLQAKEQQRRLKQqifalsevvqrrphfsyeDAVGLLGENSdlneK 988

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300  430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQ--ASQAQGAQLTAQlTSMTGLNAT 507
Cdd:COG3096   989 LRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgVQADAEAEERAR-IRRDELHEE 1067

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 254675300  508 LQQRDQELASLKEQ---AKKEQAQMLQTMQEQEQAAQGLRQQVEQ 549
Cdd:COG3096  1068 LSQNRSRRSQLEKQltrCEAEMDSLQKRLRKAERDYKQEREQVVQ 1112
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 1520-1602 9.79e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 41.09  E-value: 9.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675300 1520 QRFQEERQKLTAQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQK--EQAAEHYKLQME 1597
Cdd:PRK11448  145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETsqERKQKRKEITDQ 224


                  ....*
gi 254675300 1598 KAKTH 1602
Cdd:PRK11448  225 AAKRL 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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