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Conserved domains on  [gi|19115028|ref|NP_594116|]
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ARP2/3 actin-organizing complex subunit Arc4 [Schizosaccharomyces pombe]

Protein Classification

actin-related protein 2/3 complex subunit 4 family protein( domain architecture ID 10530811)

actin-related protein 2/3 complex subunit 4 family protein; similar to human actin-related protein 2/3 complex subunit 4 (ARPC4) which is as an actin-binding component of the Arp2/3 complex which controls actin polymerization

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ARPC4 pfam05856
ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 ...
 1-166 2.25e-90

ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerization in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion.


:

Pssm-ID: 461760  Cd Length: 166  Bit Score: 260.61  E-value: 2.25e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028     1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD 80
Cdd:pfam05856   1 MSSTLRPYLDAVRSTLNAALCLQNFPSQVVERHNKPEVEVKSSPELLLNPLIISRNEKEKCLIESSINSVRVSIKIKQAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028    81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV 160
Cdd:pfam05856  81 EIERILAQKFTRFLMQRAEAFIILRRKPVEGYDISFLITNHHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIV 160


                  ....*.
gi 19115028   161 AETYLS 166
Cdd:pfam05856 161 AEEYLA 166
 
Name Accession Description Interval E-value
ARPC4 pfam05856
ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 ...
 1-166 2.25e-90

ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerization in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion.


Pssm-ID: 461760  Cd Length: 166  Bit Score: 260.61  E-value: 2.25e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028     1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD 80
Cdd:pfam05856   1 MSSTLRPYLDAVRSTLNAALCLQNFPSQVVERHNKPEVEVKSSPELLLNPLIISRNEKEKCLIESSINSVRVSIKIKQAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028    81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV 160
Cdd:pfam05856  81 EIERILAQKFTRFLMQRAEAFIILRRKPVEGYDISFLITNHHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIV 160


                  ....*.
gi 19115028   161 AETYLS 166
Cdd:pfam05856 161 AEEYLA 166
PTZ00278 PTZ00278
ARP2/3 complex subunit; Provisional
 1-165 2.12e-76

ARP2/3 complex subunit; Provisional


Pssm-ID: 240342  Cd Length: 174  Bit Score: 225.39  E-value: 2.12e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028    1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEV----GRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRI 76
Cdd:PTZ00278   1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELngyeGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028   77 KQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGR 156
Cdd:PTZ00278  81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR 160


                 ....*....
gi 19115028  157 ARLVAETYL 165
Cdd:PTZ00278 161 ARIAAPEFF 169
 
Name Accession Description Interval E-value
ARPC4 pfam05856
ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 ...
 1-166 2.25e-90

ARP2/3 complex 20 kDa subunit (ARPC4); This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerization in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion.


Pssm-ID: 461760  Cd Length: 166  Bit Score: 260.61  E-value: 2.25e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028     1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD 80
Cdd:pfam05856   1 MSSTLRPYLDAVRSTLNAALCLQNFPSQVVERHNKPEVEVKSSPELLLNPLIISRNEKEKCLIESSINSVRVSIKIKQAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028    81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV 160
Cdd:pfam05856  81 EIERILAQKFTRFLMQRAEAFIILRRKPVEGYDISFLITNHHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIV 160


                  ....*.
gi 19115028   161 AETYLS 166
Cdd:pfam05856 161 AEEYLA 166
PTZ00278 PTZ00278
ARP2/3 complex subunit; Provisional
 1-165 2.12e-76

ARP2/3 complex subunit; Provisional


Pssm-ID: 240342  Cd Length: 174  Bit Score: 225.39  E-value: 2.12e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028    1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEV----GRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRI 76
Cdd:PTZ00278   1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELngyeGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115028   77 KQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGR 156
Cdd:PTZ00278  81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR 160


                 ....*....
gi 19115028  157 ARLVAETYL 165
Cdd:PTZ00278 161 ARIAAPEFF 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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