|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-717 |
7.18e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 7.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDsRNKIEELQQRKEADLKAQLA 272
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-IARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 273 RTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQEL 352
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 353 NmLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDEL 432
Cdd:COG1196 404 E-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 433 AMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKkrQEEELRGQIREEKARTRELENLQH-TVEELQAQV 511
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV--AVLIGVEAAYEAALEAALAAALQNiVVEDDEVAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 512 HSMDGAKGWFERR-----LKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQL---QQAQEERDGHVKTIS 583
Cdd:COG1196 561 AAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgrTLVAARLEAALRRAV 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 584 NLKQEVKD-TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSS 662
Cdd:COG1196 641 TLAGRLREvTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 16758652 663 VSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQE 717
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
289-633 |
2.91e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 2.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 289 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKH 368
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 369 RQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELG 448
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 449 AVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEA 528
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 529 EESLLQQEQEQEETLKqcREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSAVLK 608
Cdd:COG1196 459 EALLELLAELLEEAAL--LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAVLIG 531
|
330 340
....*....|....*....|....*
gi 16758652 609 DLKRqlhLERKRADKLQERLQEILT 633
Cdd:COG1196 532 VEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-507 |
1.31e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcRLQTEKETLfNDSRNKIEELQQRkEADLKAQLA 272
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLEL-EELELELEEAQAE-EYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 273 RTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVssqsADAQEQVEGLLAENNALRTSLAALEQIQTAKTQEL 352
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 353 NMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDEL 432
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16758652 433 AMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEEL 507
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-631 |
6.92e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 57 KALSKSKKAQEVEVLLSEKEMLQAKLHSQEEDFRLQNstlmAEFSKLCSQLEQLELENRQLKEgvpgaagphvdgELLRL 136
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELE----AELEELEAELAELEAELEELRL------------ELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 137 QAENTALQKNMAALQERYGKEavrpsavsEGQGDppgdvlpislspmPLAEVELKWEMEREEKKLLWEQLQGLESSKQAE 216
Cdd:COG1196 280 ELELEEAQAEEYELLAELARL--------EQDIA-------------RLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 217 TSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQ--LARTQKLQQELEAANQSLAELRDQ 294
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALraAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 295 RQGERLEHAAALRAL---QDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQA 371
Cdd:COG1196 419 LEEELEELEEALAELeeeEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 372 DYEELMGQKDDlnSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAME--------------TL 437
Cdd:COG1196 499 AEADYEGFLEG--VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAaaieylkaakagraTF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 438 QEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG- 516
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGg 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 517 -AKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDG 595
Cdd:COG1196 657 sAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590
....*....|....*....|....*....|....*.
gi 16758652 596 QRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEI 631
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-631 |
7.55e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 7.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKkaQEVEVLLSEKEMLQAKLHSQE 86
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA--NEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 87 EDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagphVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVSE 166
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEE---------LKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 167 GQGDPPGDVLPISlSPMPLAEVELKwEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKE 246
Cdd:TIGR02168 387 KVAQLELQIASLN-NEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 247 TLFNDSRNKIEELQQ--RKEADLKAQLARTQKLQQELEAANQSLAELRDQRQG---------------ERLEHA--AALR 307
Cdd:TIGR02168 465 ELREELEEAEQALDAaeRELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlselisvdEGYEAAieAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 308 ALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQN---------------------------- 359
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiegflgvakdlvkfdpklrkalsyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 360 ----------TELAAELKH-------------------------------RQADYEELMGQKDDLNSQLQESLRANSRLL 398
Cdd:TIGR02168 625 vlvvddldnaLELAKKLRPgyrivtldgdlvrpggvitggsaktnssileRRREIEELEEKIEELEEKIAELEKALAELR 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 399 EQLQEMGQEKEQLIQDLQEARK--SAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDK 476
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 477 KRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQcREQHAAELKG 556
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIEE 863
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16758652 557 KEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 631
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-633 |
2.73e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 260 QQRKEADLK-----AQLARTQKLQQELEAANQSLaelrdQRQGER----LEHAAALRALQDQVSSQSAD-AQEQVEGLLA 329
Cdd:TIGR02168 172 ERRKETERKlertrENLDRLEDILNELERQLKSL-----ERQAEKaeryKELKAELRELELALLVLRLEeLREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 330 ENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKE 409
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 410 QLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKeMLGVRARYERELRELHEdKKRQEEELRGQIRE 489
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 490 EKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQ 569
Cdd:TIGR02168 405 LEAR---LERLEDRRERLQQEI----------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 570 QAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdlkRQLHLERKRADKLQERLQEILT 633
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV-----KALLKNQSGLSGILGVLSELIS 530
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
195-622 |
4.48e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 4.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 195 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLAR- 273
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKk 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 274 ---TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQ 350
Cdd:PTZ00121 1446 adeAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 351 ELNMLREQNtelaaelKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKR----- 425
Cdd:PTZ00121 1526 EAKKAEEAK-------KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieevm 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 426 KVMLDELAMETLQEKSQHKEELGAVRLRHEKEmlgVRARYErELRELHEDKKRQEEELRGQIREEKARTREL----ENLQ 501
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE---EKKKVE-QLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaEEDK 1674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 502 HTVEELQAQVHSMDGAKGWFERRLKEA--------EESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQE 573
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAkkaeelkkKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 16758652 574 ERdghvKTISNLKQEVKDTVDGQRileKKGSAVL------KDLKRQLHLERKRAD 622
Cdd:PTZ00121 1755 EK----KKIAHLKKEEEKKAEEIR---KEKEAVIeeeldeEDEKRRMEVDKKIKD 1802
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-576 |
7.95e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 7.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALS--KSKKAQEVEVLLSEKEMLQAkLHS 84
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYelLAELARLEQDIARLEERRRE-LEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 85 QEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAGPHVDGELLRLQAENTALQKNMAALQERYGKEAVRpsav 164
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL---- 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 165 segqgdppgdvlpislspmpLAEVELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTE 244
Cdd:COG1196 393 --------------------RAAAELAAQLEELEEAE--EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 245 KETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQV 324
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 325 EGLLAENNALRTSLAALEQIQTAKTQELnmLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRAN--SRLLEQLQ 402
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEV--AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaaVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 403 EMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEE 482
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 483 LRGQIREEKARTRELENLQHTVEELQAQVHSMDgakgwFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQ 562
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEEL-----EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570
....*....|....
gi 16758652 563 NVRDQLQQAQEERD 576
Cdd:COG1196 764 ELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
190-519 |
1.08e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 190 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNdsrnkIEELQQRKEADLKA 269
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA-----LANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 270 QLARTQKLQQELEAANQSLAELRDQRQgerlehaaALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKT 349
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLD--------ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 350 QELNMLReqntelaaelkhrqADYEELMGQKDDLNSQLQEslraNSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVML 429
Cdd:TIGR02168 379 EQLETLR--------------SKVAQLELQIASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 430 DELAMETLQEKSQHKEELGAVRLRHEKEMLgvraryeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQA 509
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREEL-------EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330
....*....|
gi 16758652 510 QVHSMDGAKG 519
Cdd:TIGR02168 514 NQSGLSGILG 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-527 |
3.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 188 VELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRKE--A 265
Cdd:TIGR02168 673 LERRREIEELEEKI--EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEqlE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 266 DLKAQLARTQK-LQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQI 344
Cdd:TIGR02168 747 ERIAQLSKELTeLEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 345 QTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQEslransrLLEQLQEMGQEKEQLIQDLQEARKSAEK 424
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-------LESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 425 rkvmldelAMETLQEKSQHKEElgavrLRHEKEmlgvraryerELRELHEDKKRQEEELRGQIREEKARTRELENLqhTV 504
Cdd:TIGR02168 899 --------LSEELRELESKRSE-----LRRELE----------ELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TL 953
|
330 340
....*....|....*....|...
gi 16758652 505 EELQAQVHSMDGAKGWFERRLKE 527
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKR 976
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
196-748 |
9.01e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 9.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 196 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcRLQTEKETLFNDSRNKIEELQQRKEADLK---AQLA 272
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKaaeAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 273 RTQKLQQELEAANQSlAELRDQRQGERLEHAAALRALQDQVsSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTqel 352
Cdd:PTZ00121 1351 EAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--- 1425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 353 nmlREQNTELAAELKHRQadyeELMGQKDDLNSQLQESLRANSrlLEQLQEMGQEKEQLIQDLQEARKSAE-KRKVMLDE 431
Cdd:PTZ00121 1426 ---KAEEKKKADEAKKKA----EEAKKADEAKKKAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEaKKKAEEAK 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 432 LAMETLQEKSQHKEELGAVRLRHEKemlgvraRYERELRELhEDKKRQEEELRGQIREEKARTRELENLQHTVEELQA-Q 510
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEA-------KKADEAKKA-EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAeE 1568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 511 VHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKgKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVK 590
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK-KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 591 DTvDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYRE 670
Cdd:PTZ00121 1648 KA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16758652 671 ILKEKESSAIPARSLSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIET 748
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
269-518 |
3.51e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 269 AQLARTQKLQQELEAANQSLAELRDQRQgerlehaaalralqdQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAK 348
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELA---------------ALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 349 TQELNMLREQNTELAAELKHRQADYEEL------MGQKDDLNSQL-QESLRANSRLLEQLQEMGQEKEQLIQDLQEARKS 421
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELlralyrLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 422 AEKRKvmldelamETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 501
Cdd:COG4942 162 LAALR--------AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|....*..
gi 16758652 502 HTVEELQAQVHSMDGAK 518
Cdd:COG4942 234 AEAAAAAERTPAAGFAA 250
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-506 |
3.97e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 3.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 28 SDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSEKEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQL 107
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 108 EQLELENRQLKEGVPGAAGPHVDGELLRLQAEntalQKNMAALQERYGKEAVRPSAVSEGqgdppgdvlpislspmplAE 187
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAE----EKKKADEAKKKAEEAKKADEAKKK------------------AE 1454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 188 VELKWEmerEEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrnKIEELQQRKEADl 267
Cdd:PTZ00121 1455 EAKKAE---EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK--------KADEAKKAEEAK- 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 268 KAQLARTQKLQQELEAANQSlaelRDQRQGERLEHAAALRALQDQVSSQSADAQEQvegllAENNALRTSlAALEQIQTA 347
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKA----EEKKKADELKKAEELKKAEEKKKAEEAKKAEE-----DKNMALRKA-EEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 348 KTQELNMLREQNTELAAELKHRQAD----YEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAE 423
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 424 KRKvmldelAMETLQEKSQHKEELGAVRLRHEKEmlgvrARYERELRELHEDKKRQEEELRgqiREEKARTRELENLQHT 503
Cdd:PTZ00121 1673 DKK------KAEEAKKAEEDEKKAAEALKKEAEE-----AKKAEELKKKEAEEKKKAEELK---KAEEENKIKAEEAKKE 1738
|
...
gi 16758652 504 VEE 506
Cdd:PTZ00121 1739 AEE 1741
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
189-630 |
8.03e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 8.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 189 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDS-RNKIEELQQRKEADL 267
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 268 KAQLAR-----TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALE 342
Cdd:PTZ00121 1399 KAEEDKkkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 343 QIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRA--NSRLLEQLQEMGQ-EKEQLIQDLQEAR 419
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKADEAKKAEEkKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 420 KSAEKRKVmldelametlQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQiREEKARTRELEN 499
Cdd:PTZ00121 1559 KAEEKKKA----------EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 500 lqhtVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCRE--QHAAELKGKEEELQNVRDQLQQAQEERDg 577
Cdd:PTZ00121 1628 ----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkKKAEEAKKAEEDEKKAAEALKKEAEEAK- 1702
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 16758652 578 HVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQE 630
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
212-425 |
1.83e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 212 SKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRkeadLKAQLARTQKLQQELEAANQSLAEL 291
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----LKQLAALERR----IAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 292 RDQRQGERLEHAAALRALQDQV-----------------SSQSADAQEQVEGLLAENNALRTSLAALEQIQT---AKTQE 351
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAelaALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 352 LNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKR 425
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
215-607 |
3.55e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 215 AETSRLQEELAKLSEKLKKKQESFCRLQTEKETL--FNDSRNKIEELQQ----RKEADLKAQLARTQKLQQELEAANQSL 288
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAerYQALLKEKREYEGyellKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 289 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAEnnaLRTSLAALEQIQTAKTQELNmlreqntELAAELKH 368
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE---LEAEIASLERSIAEKERELE-------DAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 369 RQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEarksaekrkvmLDELAMETLQEKSQHKEELG 448
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE-----------VDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 449 AVRLRHEkEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELqaqvhsmdgakgwfERRLKEA 528
Cdd:TIGR02169 396 KLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ--------------EWKLEQL 460
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16758652 529 EESllqqeqeqeetlkqcREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVL 607
Cdd:TIGR02169 461 AAD---------------LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH 524
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-392 |
4.67e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 38 LSSLRQKVAYLDKEFSKAQK--ALSKSKKAQEVEVLLSEKEMLQAKLH---SQEEDFRLQNSTLMAEFSKLCSQLEQLEL 112
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERykELKAELRELELALLVLRLEELREELEelqEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 113 ENRQLKEGVPGAagphvDGELLRLQAENTALQKNMAALQERYgKEAVRPSAVSEGQGDppgdvlpislspmplaevelKW 192
Cdd:TIGR02168 275 EVSELEEEIEEL-----QKELYALANEISRLEQQKQILRERL-ANLERQLEELEAQLE--------------------EL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKkkqesfcrlqtEKETLFNDSRNKIEELqQRKEADLKAQLA 272
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE-----------ELESRLEELEEQLETL-RSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 273 RTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ-DQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQE 351
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 16758652 352 LNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLR 392
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-506 |
1.04e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 261 QRKEADLKAQLARtqkLQQELEAANQSLAELRDQRQG--ERLEHAAALRALQ------DQVSSQSADAQEQVEGLLAENN 332
Cdd:COG4913 609 RAKLAALEAELAE---LEEELAEAEERLEALEAELDAlqERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 333 ALRT---SLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRAnsRLLEQLQEMGQEK- 408
Cdd:COG4913 686 DLAAleeQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAAALGDAv 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 409 -EQLIQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRArYERELRELHEDK-KRQEEELRGQ 486
Cdd:COG4913 764 eRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEEDGlPEYEERFKEL 839
|
250 260
....*....|....*....|
gi 16758652 487 IREEKarTRELENLQHTVEE 506
Cdd:COG4913 840 LNENS--IEFVADLLSKLRR 857
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-414 |
1.90e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 4 ALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSK-SKKAQEVEVLLSEKEMLQAKL 82
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQlEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 83 HSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagphvdgELLRLQAENTALQKNMAALQERYGKEAVRPS 162
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE------------ALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 163 AvsegqgdppgdvlpislspmplaevelkWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQ 242
Cdd:TIGR02168 835 A----------------------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 243 TEketlfndsRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQE 322
Cdd:TIGR02168 887 EA--------LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 323 QVEGLLAENNALRTSLAALEQiqtaktqELNMLREQNteLAAElkhrqADYEELMGQKDDLNSQLQESLRANSRLLEQLQ 402
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLEN-------KIKELGPVN--LAAI-----EEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
410
....*....|..
gi 16758652 403 EMGQEKEQLIQD 414
Cdd:TIGR02168 1025 EIDREARERFKD 1036
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
189-633 |
2.35e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 189 ELKWEMER-EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE 264
Cdd:PRK02224 217 ELDEEIERyEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 265 ----------ADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNAL 334
Cdd:PRK02224 297 dllaeaglddADAEAVEARREELEDRDEELRDRLEECR-VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 335 RTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQEsLRANSRLLEQLQEMGQEkeqliqd 414
Cdd:PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARERVEEAEA------- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 415 LQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYER--ELRELH------EDKKRQEEELRGQ 486
Cdd:PRK02224 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 487 IREEKARTRE-LENLQHTVEELQAQVHSMDGAKGWFERRLKEAEES------LLQQEQEQEETLKQCREQHA--AELKGK 557
Cdd:PRK02224 528 RRETIEEKRErAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnsKLAELKERIESLERIRTLLAaiADAEDE 607
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16758652 558 EEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 633
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
193-504 |
3.00e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD---LKA 269
Cdd:TIGR02169 685 GLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL-EELEEDLSSLEQEIENVkseLKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 270 QLARTQKLQQELEAANQSLAELRDQRQGERLEH-AAALRALQDQVSSQSADAQE---QVEGLLAENNALRTSLAALEQIQ 345
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 346 TAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKR 425
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 426 KVM-------LDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRAR------------YERELRELHEDKKRQE--EELR 484
Cdd:TIGR02169 923 KAKlealeeeLSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeYEEVLKRLDELKEKRAklEEER 1002
|
330 340
....*....|....*....|
gi 16758652 485 GQIREekaRTRELENLQHTV 504
Cdd:TIGR02169 1003 KAILE---RIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-424 |
7.91e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 7.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 37 ELSSLRQKVAYLdkefskAQKALSKSKKAQEVEVLLSEKEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 116
Cdd:TIGR02168 678 EIEELEEKIEEL------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 117 lkegvpgaagphvdgellrLQAENTALQKNMAALQERYGKEAVRPSAVSEGqgdppgdvlpislspmpLAEVELKWEMER 196
Cdd:TIGR02168 752 -------------------LSKELTELEAEIEELEERLEEAEEELAEAEAE-----------------IEELEAQIEQLK 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 197 EEKKLLWEQLqgleSSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRkEADLKAQLARTQK 276
Cdd:TIGR02168 796 EELKALREAL----DELRAELTLLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSED-IESLAAEIEELEE 866
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 277 LQQELEAANQSLAELRDQRQgerlEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLR 356
Cdd:TIGR02168 867 LIEELESELEALLNERASLE----EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16758652 357 EQNTEL--------AAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQL---IQDLQEARKSAEK 424
Cdd:TIGR02168 943 ERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLtaqKEDLTEAKETLEE 1021
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
264-515 |
3.34e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 264 EADLKAQLARTQKLQQELEAANQSLAELRDQRqgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRtsLAALEQ 343
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQI--ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 344 IQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNsqlqeslransrlleqlqemGQEKEQLIQDLQEARKSAE 423
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG--------------------GDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 424 KRKVMLDELAmetlqeksQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 503
Cdd:COG4913 356 ERERRRARLE--------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
250
....*....|..
gi 16758652 504 VEELQAQVHSMD 515
Cdd:COG4913 428 IASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-403 |
6.77e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 219 RLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 294 QrqgerlehAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQtaktQELNMLREQNTELAAELKHRQADY 373
Cdd:COG4913 693 Q--------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL----EAAEDLARLELRALLEERFAAALG 760
|
170 180 190
....*....|....*....|....*....|
gi 16758652 374 EELMGQKDDlnsQLQESLRANSRLLEQLQE 403
Cdd:COG4913 761 DAVERELRE---NLEERIDALRARLNRAEE 787
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
197-625 |
7.73e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 197 EEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfnDSRNKIEELQQRKEAdLKAQLARTQK 276
Cdd:COG4717 71 KELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEA-LEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 277 LQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLR 356
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 357 EQNTELAAELkHRQADYEELMGQKDDLNSQ-LQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAME 435
Cdd:COG4717 227 EELEQLENEL-EAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 436 TLQEKSqHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARtRELENLQHTVEELQAQVHSMD 515
Cdd:COG4717 306 ELQALP-ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 516 GAK-----GWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVK 590
Cdd:COG4717 384 EEElraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430
....*....|....*....|....*....|....*
gi 16758652 591 DTVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 625
Cdd:COG4717 464 QLEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-743 |
7.79e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 7.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE----KLKKKQESFCRLQTEKETlfnDSRNKIEELQQRKEADlK 268
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDakrvEIARKAEDARKAEEARKA---EDAKKAEAARKAEEVR-K 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 269 AQLARTQKLQQELEAANQSLAELR--DQRQGERLEHAAALRALQD-QVSSQSADAQEQVEGLLAENNALRTSLAALEQIQ 345
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKaeEARKAEDAKKAEAVKKAEEaKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 346 TAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANsRLLEQLQEMGQEKEQLIQDLQEARKSAEKR 425
Cdd:PTZ00121 1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 426 KVMLDELAMETlqEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHT 503
Cdd:PTZ00121 1349 KAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKK 1426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 504 VEELQA---------QVHSMDGAKGWFE--RRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQ 572
Cdd:PTZ00121 1427 AEEKKKadeakkkaeEAKKADEAKKKAEeaKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 573 EERDghvKTISNLKQEVKDTVDGQRILEKKGSAvlKDLKRQlhLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSP 652
Cdd:PTZ00121 1507 EAKK---KADEAKKAEEAKKADEAKKAEEAKKA--DEAKKA--EEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 653 SRTQTGDSSSVSSFSYREILK-EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 731
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
570
....*....|..
gi 16758652 732 SASMAEDLCRKS 743
Cdd:PTZ00121 1659 NKIKAAEEAKKA 1670
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
256-457 |
8.27e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 8.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 256 IEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALR 335
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 336 TSLAALEQIQtaKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQEslrANSRLLEQLQEMGQEKEQLIQDL 415
Cdd:COG4717 123 KLLQLLPLYQ--ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 16758652 416 QEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 457
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-421 |
8.66e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 219 RLQEELAKLS------EKLKKKQESFCRLQTEKETlFNDSRNKIEELQQRKEA-DLKAQLARTQKLQQELEAANQSLAEL 291
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIRELAER-YAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 292 RDQR---QGERLEHAAALRALQDQVSSQSADaqeQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKH 368
Cdd:COG4913 308 EAELerlEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16758652 369 RQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLqEARKS 421
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL-ERRKS 436
|
|
| DUF4407 |
pfam14362 |
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins ... |
198-334 |
1.94e-05 |
|
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.
Pssm-ID: 464151 [Multi-domain] Cd Length: 295 Bit Score: 47.25 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 198 EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKkqesfcrLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR---- 273
Cdd:pfam14362 109 DRELLEIQQEEADAAKAQLAAAYRARLAELEAQIAA-------LDAEIDAAEARLDALQAEARCELDGTPGTGTGVpgdg 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16758652 274 --TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVE---GLLAENNAL 334
Cdd:pfam14362 182 pvAKTKQAQLDAAQAELAALQAQNDARLAALRAELARLTAERAAARARSQAAIDgddGLLARLEAL 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
386-587 |
2.46e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 386 QLQESLRANSRLLEQLQEMGQEKEQL--IQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRA 463
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 464 RYERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQVHSMDGAKGWFE---RRLKEAEESLLQQEQEQE 540
Cdd:COG4913 309 AELERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLERELEERERRRARLEallAALGLPLPASAEEFAALR 386
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16758652 541 ETLKQCREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQ 587
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
214-387 |
2.99e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 214 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKeadLKAQLARTQKLQQELEAANQSLaelrD 293
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDAL----REELDELEAQI---RGNGGDRLEQLEREIERLEREL----E 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 294 QRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAE---LKHRQ 370
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiasLERRK 435
|
170
....*....|....*...
gi 16758652 371 ADY-EELMGQKDDLNSQL 387
Cdd:COG4913 436 SNIpARLLALRDALAEAL 453
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
241-591 |
3.42e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 241 LQTEKETLFNDSRNKIEELQQRKEAdlkaqlaRTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA 320
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQD-------RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 321 QEQVEGLLAENNALRTSLAALEQIQTAKTQELnmlrEQNTELA-AELKHRQADYEELMGQKDDLNSQLQESLranSRLLE 399
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----EKQLVLAnSELTEARTERDQFSQESGNLDDQLQKLL---ADLHK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 400 QLQEMGQEKEQ---LIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYE--RELRELHE 474
Cdd:pfam15921 389 REKELSLEKEQnkrLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTA 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 475 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSmdgakgwferrlKEAEESLLQQEQEQEETLKQCREQHAAEL 554
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE------------KERAIEATNAEITKLRSRVDLKLQELQHL 536
|
330 340 350
....*....|....*....|....*....|....*..
gi 16758652 555 KGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKD 591
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEN 573
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
219-511 |
3.67e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 219 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLArtqKLQQELEAA-------NQSLAEL 291
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLA---DYQQALDVQqtraiqyQQAVQAL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 292 RDQRQgerLEHAAALRA--LQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAktqeLNMLREQNTELAAELKHR 369
Cdd:PRK04863 424 ERAKQ---LCGLPDLTAdnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA----YQLVRKIAGEVSRSEAWD 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 370 QAdyEELMGQKDDLNSQLQ--ESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEEL 447
Cdd:PRK04863 497 VA--RELLRRLREQRHLAEqlQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV 574
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 448 gavrlrhekemlgvraryeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 511
Cdd:PRK04863 575 -------------------SEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
190-636 |
3.97e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 190 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKkqesfcRLQTEKETLFNDSRNKIEELQQRKEADLKA 269
Cdd:TIGR00618 245 LTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR------ARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 270 QLARTQKLQQELEAANQSLAELRDQRQGERLEHAaalralQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKT 349
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHS------QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 350 QELNMLR---EQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRK 426
Cdd:TIGR00618 393 QKLQSLCkelDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 427 VMLDELAMETLQEKSQHKEElgavrlrhekemlGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEE 506
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVV-------------LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQ 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 507 LQAQVHSMDGaKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLK 586
Cdd:TIGR00618 540 LETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 16758652 587 QEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 636
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-444 |
4.06e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 28 SDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKS---KKAQEVEVLLSEKEMLQAKLHSQEEDFRLQNSTLMAEFSKLC 104
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAeekKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 105 SQLEQLELENRQLKEGVPGAAGPHVDGELLRLQAENTALQKNMAALQE-------RYGKEAVRPSAVSEGQGDPPGDVLP 177
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakkadeaKKAEEAKKADEAKKAEEKKKADELK 1552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 178 ISlSPMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESF-----CRLQTEKETLFNDS 252
Cdd:PTZ00121 1553 KA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEE 1631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 253 RNKIEELQQRKEADL-KAQLARTQKLQQELEAANQSLAELRDQRQGERL---EHAAALRALQDQVSSQSADAQEQVEGLL 328
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKE 1711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 329 AENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQ-------- 400
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeldeedek 1791
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16758652 401 ------------------LQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHK 444
Cdd:PTZ00121 1792 rrmevdkkikdifdnfanIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
403-656 |
4.10e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 403 EMGQEKEQLIQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkemlgvraryERELRELHEDKKRQE 480
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 481 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEE 560
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 561 LQNVRDQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 640
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 16758652 641 LEELVLSEMNSPSRTQ 656
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
185-514 |
4.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 185 LAEVELKWEMEREEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQT----EKETLFNDSRNKIEELQ 260
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEE-RLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 261 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAA 340
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 341 LEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDL---NSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQE 417
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 418 ARKSAEKRKVML-----DELAMETLQEKSQHKEELGAvRLRHEKEMLGVRARYERELRElHEDKKRQEEELRGQIREEKA 492
Cdd:COG4717 366 EELEQEIAALLAeagveDEEELRAALEQAEEYQELKE-ELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEE 443
|
330 340
....*....|....*....|..
gi 16758652 493 RTRELENLQHTVEELQAQVHSM 514
Cdd:COG4717 444 LEEELEELREELAELEAELEQL 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-631 |
5.38e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 322 EQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQL 401
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 402 QEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEelgavrlrhekemlgvraryeRELRELHEDKKRQEE 481
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ---------------------AELSKLEEEVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 482 ELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREqHAAELKGKEEEL 561
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD-LESRLGDLKKER 891
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16758652 562 QNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHL--ERKRADKLQERLQEI 631
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeEELSLEDVQAELQRV 963
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
214-505 |
5.74e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 214 QAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETLF--NDSRNKIEELQQRK---EADLKAQLARTQKLQQELEAAN 285
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQrlhQAFSRFIGSHLAVAfeADPEAELRQLNRRRvelERALADHESQEQQQRSQLEQAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 286 QSLAELR----------DQRQGERLEHAAA--LRALQDQVS-SQSADAQEQVEGLLAennALRTSLAALEQIQTAKTQEL 352
Cdd:PRK04863 872 EGLSALNrllprlnllaDETLADRVEEIREqlDEAEEAKRFvQQHGNALAQLEPIVS---VLQSDPEQFEQLKQDYQQAQ 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 353 NMLREQNTELAA--ELKHRQA-----DYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEMGQEKEQLIQDLQEARKS 421
Cdd:PRK04863 949 QTQRDAKQQAFAltEVVQRRAhfsyeDAAEMLAKNSDLNEKLRQRLEqaeqERTRAREQLRQAQAQLAQYNQVLASLKSS 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 422 AEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEKEMLGVRARYERELR-ELHEDKKRQEEELRGQIREEKARTRELENL 500
Cdd:PRK04863 1029 YDAKRQMLQELKQE-LQDLGVPADSGAEERARARRDELHARLSANRSRRnQLEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107
|
....*
gi 16758652 501 QHTVE 505
Cdd:PRK04863 1108 REQVV 1112
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-489 |
6.75e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKAL-SKSKKAQEVEVLLSEKEMLQAKLHSQ 85
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELaELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 86 EEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagphvdgELLRLQAENTALQKNMAALQERYGKEAVRpsavs 165
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAE------------ELLEALRAAAELAAQLEELEEAEEALLER----- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 166 egqgdppgdvlpislspmpLAEVELKWEMEREEKKLLwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEK 245
Cdd:COG1196 416 -------------------LERLEEELEELEEALAEL-EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 246 ETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLA---------ELRDQRQGERLEHAAALRALQDQVSSQ 316
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 317 SADAQEQVEgLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELM------------------- 377
Cdd:COG1196 556 DEVAAAAIE-YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYyvlgdtllgrtlvaarlea 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 378 ----------------GQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKS 441
Cdd:COG1196 635 alrravtlagrlrevtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 442 QHKEELGAVRLRHEKEMLGVRARYERELREL----------------HEDKKRQEEELRGQIRE 489
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEelleeealeelpeppdLEELERELERLEREIEA 778
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
256-424 |
7.14e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 7.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 256 IEELQQRKEADLKAQLA----RTQKLQQELEAANQSLAELR--------DQRQGERLEHAAALRALQDQVSSQSADAQ-- 321
Cdd:COG3206 162 LEQNLELRREEARKALEfleeQLPELRKELEEAEAALEEFRqknglvdlSEEAKLLLQQLSELESQLAEARAELAEAEar 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 322 -EQVEGLLAENNALRTSLAALEQIQTAKTQeLNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLE- 399
Cdd:COG3206 242 lAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEa 320
|
170 180
....*....|....*....|....*
gi 16758652 400 QLQEMGQEKEQLIQDLQEARKSAEK 424
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAE 345
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
284-511 |
8.84e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 284 ANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSlaaleqiqtaktQELNMLREQNTELA 363
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS------------EEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 364 AELKHRQADYEELMGQKDDLNSQLQESLRANSRLLE--QLQEMGQEKEQLIQDLQEARksaekrkvmldelamETLQEKS 441
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELS---------------ARYTPNH 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 442 ----QHKEELGAVRLRHEKEMLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 511
Cdd:COG3206 291 pdviALRAQIAALRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
189-600 |
9.62e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 189 ELKWEMEREEKKLLWEQLQGLESSKQAEtsRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEA 265
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEEAE--SLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIEE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 266 ----------DLKAQLARTQKLQQELEAANQSLAELRDQRQG--ERLEHAAALRAL-------QDQVSSQSADAQEQVEG 326
Cdd:PRK02224 396 lrerfgdapvDLGNAEDFLEELREERDELREREAELEATLRTarERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 327 LLAEnnaLRTSLAALEQIQTAktqelnmlREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQ 406
Cdd:PRK02224 476 RVEE---LEAELEDLEEEVEE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 407 EKEQLIQDLQEARKSAEKRKVMLDElAMETLQEKSQHKEELGAVRLRHEK--EMLGVRARYERE---LRELHEDKKRQEE 481
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEE-AREEVAELNSKLAELKERIESLERirTLLAAIADAEDEierLREKREALAELND 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 482 ELRGQIREEKARTRELEnlqhtvEELQaqvhsmdgakgwfERRLKEAEESLLQQeqeqeetlkqcrEQHAAELKGKEEEL 561
Cdd:PRK02224 624 ERRERLAEKRERKRELE------AEFD-------------EARIEEAREDKERA------------EEYLEQVEEKLDEL 672
|
410 420 430
....*....|....*....|....*....|....*....
gi 16758652 562 QNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILE 600
Cdd:PRK02224 673 REERDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
212-419 |
1.05e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 212 SKQAETSR----LQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrkeADLKAQLARTQKLQQELEAANQS 287
Cdd:COG3206 168 LRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQL---SELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 288 LAELRDQRQGE--RLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRtslAALEQIQTAKTQELNMLREQNTELAAE 365
Cdd:COG3206 245 LRAQLGSGPDAlpELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVI---ALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16758652 366 LKHRQADYEELMGQKDDLNSQLQESLRANSRL--LEQLQEMGQEK-EQLIQDLQEAR 419
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-604 |
1.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 337 SLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQ 416
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 417 EARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKEMLgVRARYereLRELHEDKKRQEEELRGQIREEKARTRE 496
Cdd:COG4942 94 ELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 497 LENLQHTVEELQAQVhsmdgakgwfERRLKEAEESLLQqeqeqeetlkqcREQHAAELKGKEEELQNVRDQLQQAQEERD 576
Cdd:COG4942 169 LEAERAELEALLAEL----------EEERAALEALKAE------------RQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|....*...
gi 16758652 577 GHVKTISNLKQEVKDTVDGQRILEKKGS 604
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
179-511 |
1.28e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 179 SLSPMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEE 258
Cdd:COG5022 914 SLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSE 993
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 259 LQQrkeadLKAQLARTQKLQQELEAANQSLAELrdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSL 338
Cdd:COG5022 994 LKN-----FKKELAELSKQYGALQESTKQLKEL--PVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARY 1066
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 339 AAL----EQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANsrlleQLQEMGQEKEQLIQD 414
Cdd:COG5022 1067 KALklrrENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLN-----LLQEISKFLSQLVNT 1141
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 415 LQEARKSAEKRKVMLDELAMETLQEKSQHKEelgavrlrHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKART 494
Cdd:COG5022 1142 LEPVFQKLSVLQLELDGLFWEANLEALPSPP--------PFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKI 1213
|
330
....*....|....*..
gi 16758652 495 RELENLQHTVEELQAQV 511
Cdd:COG5022 1214 FSGWPRGDKLKKLISEG 1230
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
239-509 |
1.37e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 239 CRLQTEK-ETLFNDSRNKIEELQQRKEA--DLKAQLARTQKLQQELEAANQSLAELRDqRQGERLEHAAALRALQDQVSS 315
Cdd:PRK02224 473 DRERVEElEAELEDLEEEVEEVEERLERaeDLVEAEDRIERLEERREDLEELIAERRE-TIEEKRERAEELRERAAELEA 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 316 QSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAelkhrQADYEELMGQKDDLNSQLQEslrANS 395
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA-----IADAEDEIERLREKREALAE---LND 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 396 RLLEQLQEMGQEKEQLIQDLQEARKSAEKRKvmlDELAMETLQEKSQHKEELGAVRLRHEKEMLGVraryERELRELhed 475
Cdd:PRK02224 624 ERRERLAEKRERKRELEAEFDEARIEEARED---KERAEEYLEQVEEKLDELREERDDLQAEIGAV----ENELEEL--- 693
|
250 260 270
....*....|....*....|....*....|....
gi 16758652 476 kkrqeEELRGQIREEKARTRELENLQHTVEELQA 509
Cdd:PRK02224 694 -----EELRERREALENRVEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
40-484 |
1.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 40 SLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSEKEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKE 119
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 120 GVPGAAGPHVDGELLRLQAENTALQKNMAALQERYGK-EAVRPSAVSEGQGDppgdvlpislspmplaevelkwEMEREE 198
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKaDEAKKAAEAKKKAD----------------------EAKKAE 1519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 199 KKLLWEQLQGLESSKQAETSRLQEELAKlSEKLKKKQEsfcrLQTEKETLFNDSRNKIEElqQRKEADLKAQLARTQKLQ 278
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKK-ADELKKAEE----LKKAEEKKKAEEAKKAEE--DKNMALRKAEEAKKAEEA 1592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 279 QELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQ 358
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 359 NTELAAELKHRQAD---YEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAME 435
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDekkAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 16758652 436 TLQEKS----QHKEELGAVRLRHEKEmlgvrARYERELRElhEDKKRQEEELR 484
Cdd:PTZ00121 1753 EEEKKKiahlKKEEEKKAEEIRKEKE-----AVIEEELDE--EDEKRRMEVDK 1798
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-442 |
1.45e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 246 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlEHAAALRALQDQVSSQSADAQEQVE 325
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ-AEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 326 GLLAENNALRTSLAALEQIQTAKTQE--------LNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRL 397
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16758652 398 LEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQ 442
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
38-337 |
1.54e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 38 LSSLRQKVAYLDKEFSKAQK--ALSKSKKAQEVEVLLSEKEMLQAklhsQEEDFRLQNSTLMAEFSKLCSQLEQLELE-- 113
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALER----QKEAIERQLASLEEELEKLTEEISELEKRle 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 114 -NRQLKEGVPGAAGPHVDGELLRLQAENTALQKNMAALQeryGKEAVRPSAVSEGQGDPPGDVLPISLSPMPLAEVELKW 192
Cdd:TIGR02169 269 eIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE---RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLQGLESSKQAETSRLQE---ELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE--ADL 267
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEelADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 268 KAQLA-----------RTQKLQQELEAANQSLAELRDQRQGERLEHaAALRALQDQVSSQSADAQEQVEGLLAENNALRT 336
Cdd:TIGR02169 426 NAAIAgieakineleeEKEDKALEIKKQEWKLEQLAADLSKYEQEL-YDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
.
gi 16758652 337 S 337
Cdd:TIGR02169 505 R 505
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
195-416 |
1.89e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 195 EREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKK-KQESFCRL-QTEKETLFNDSRNKIEELQQ----------- 261
Cdd:PRK11281 76 DRQKEET--EQLKQQLAQAPAKLRQAQAELEALKDDNDEeTRETLSTLsLRQLESRLAQTLDQLQNAQNdlaeynsqlvs 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 262 ------RKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA--------------LQDQVSSQSADAQ 321
Cdd:PRK11281 154 lqtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAqndlqrkslegntqLQDLLQKQRDYLT 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 322 EQVEGLLAENNALRTSL------AALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANS 395
Cdd:PRK11281 234 ARIQRLEHQLQLLQEAInskrltLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKN 313
|
250 260
....*....|....*....|.
gi 16758652 396 RLLEQLQEMGQEKEQlIQDLQ 416
Cdd:PRK11281 314 WLDRLTQSERNIKEQ-ISVLK 333
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
217-457 |
2.40e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.83 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 217 TSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAElrdqrq 296
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDDAAQNALADKE---------RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALE------ 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 297 gerlehaaalralqdqvssqsADAQEQVEGLLAENNALRTSLaaleqiqTAKTQELNMLREQNT---ELAAELKHRQAD- 372
Cdd:NF012221 1602 ---------------------TNGQAQRDAILEESRAVTKEL-------TTLAQGLDALDSQATyagESGDQWRNPFAGg 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 373 -----YEELMGQKDDLNSQLQESLRANSRLLEQLQ------EMGQEK-EQLI----QDLQEARKSAEKRKvmLDELAMET 436
Cdd:NF012221 1654 lldrvQEQLDDAKKISGKQLADAKQRHVDNQQKVKdavaksEAGVAQgEQNQanaeQDIDDAKADAEKRK--DDALAKQN 1731
|
250 260
....*....|....*....|...
gi 16758652 437 LQEKSQHKEELGA--VRLRHEKE 457
Cdd:NF012221 1732 EAQQAESDANAAAndAQSRGEQD 1754
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
194-514 |
2.74e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 194 MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 273
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 274 TQKLQQELEAANQSLAELRDqrqgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALrtslaaleqiqTAKTQELN 353
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLD----ADIETAAADQEQLPSWQSELENLEERLKALTGKHQDV-----------TAKYNRRR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 354 MLREQ--NTELAAELKHRQADYEELMGQKDDLNSQLQESLRA-NSRLLEQLQEMGQEKEQLIQDLQEArksaekrKVMLD 430
Cdd:pfam12128 382 SKIKEqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGEL-------KLRLN 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 431 ELAM--ETLQEKSQHKEELGAVRLRHEKEmlgvRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 508
Cdd:pfam12128 455 QATAtpELLLQLENFDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLF 530
|
....*.
gi 16758652 509 AQVHSM 514
Cdd:pfam12128 531 PQAGTL 536
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
278-415 |
4.74e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 278 QQELEAANQSLAELRDQRQGERlehaaalralqdqvsSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLRE 357
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLER---------------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16758652 358 QNTELAAELKHRQADYEELMGQKDDLNSQ---LQESLRANSRLLEQLQEMGQEKEQLIQDL 415
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQiaaLRRQLAALEAALDASEKRDRESQAKIADL 177
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
198-405 |
5.07e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 198 EKKLLWEQLQGLESSKQA--ETSRLQEELAKLSeKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQ 275
Cdd:PRK10929 108 EQEILQVSSQLLEKSRQAqqEQDRAREISDSLS-QLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALK 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 276 KLQQELE----AAN--QSLAELRD---QRQGERLEhaAALRALQDQVSSQ----SADAQEQVEgLLAENNA-LRTSLaaL 341
Cdd:PRK10929 187 ALVDELElaqlSANnrQELARLRSelaKKRSQQLD--AYLQALRNQLNSQrqreAERALESTE-LLAEQSGdLPKSI--V 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16758652 342 EQIQTaktqelnmlreqNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMG 405
Cdd:PRK10929 262 AQFKI------------NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
189-513 |
5.35e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 189 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLK 268
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAK 348
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 349 TQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVM 428
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 429 LDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 508
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
....*
gi 16758652 509 AQVHS 513
Cdd:pfam02463 494 KLEER 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
185-400 |
1.00e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 185 LAEVELKWEMEREEKKLLweQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcRLQTEKETLFNDSRNKIEELQQRKE 264
Cdd:COG3206 191 LEEAEAALEEFRQKNGLV--DLSEEAKLLLQQLSELESQLAEARAELAEAEA---RLAALRAQLGSGPDALPELLQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 265 ADLKAQLARTQ----KLQQELEAANQSLAELRDQRqgerlehAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAA 340
Cdd:COG3206 266 QQLRAQLAELEaelaELSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 341 LEQiqtaKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLrANSRLLEQ 400
Cdd:COG3206 339 LEA----RLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTV-GNVRVIDP 393
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
211-423 |
1.11e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 211 SSKQAETSRLQEELAKLSEKLKKKQESFcrlqteketlfndsrNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 290
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAEL---------------EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 291 LRD---------QRQGERLEHAAALralqdqVSSQSA----DAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLRE 357
Cdd:COG3883 84 RREelgeraralYRSGGSVSYLDVL------LGSESFsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16758652 358 QNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAE 423
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
204-442 |
1.23e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.73 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 204 EQLQG----LESSKQAETSRLQ-----EELAKLSEKLKKKqesfcrLQTEKETLFNDSRN-KIEELQQRKEADLKAQLAR 273
Cdd:PRK10929 48 EALQSalnwLEERKGSLERAKQyqqviDNFPKLSAELRQQ------LNNERDEPRSVPPNmSTDALEQEILQVSSQLLEK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 274 TQKLQQELEAANQ---SLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALE--QIQTAK 348
Cdd:PRK10929 122 SRQAQQEQDRAREisdSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELElaQLSANN 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 349 TQELNMLReqnTELaAELKHRQADyEELMGQKDDLNSQLQE----SLRANSRLLEQ-------LQEMGQEKEQLIQDL-Q 416
Cdd:PRK10929 202 RQELARLR---SEL-AKKRSQQLD-AYLQALRNQLNSQRQReaerALESTELLAEQsgdlpksIVAQFKINRELSQALnQ 276
|
250 260 270
....*....|....*....|....*....|....
gi 16758652 417 EARK----SAEKRKVMLDEL----AMETLQEKSQ 442
Cdd:PRK10929 277 QAQRmdliASQQRQAASQTLqvrqALNTLREQSQ 310
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
218-631 |
1.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 218 SRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQRQg 297
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREELEKLEKLLQ- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 298 eRLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELM 377
Cdd:COG4717 127 -LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 378 GQKddlnSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 457
Cdd:COG4717 206 QRL----AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 458 MLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhtVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQ 537
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL---LAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 538 EQEETLKQCREQHAAELKGK-----EEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKG-SAVLKDLK 611
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEagvedEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELE 438
|
410 420
....*....|....*....|
gi 16758652 612 RQLHLERKRADKLQERLQEI 631
Cdd:COG4717 439 EELEELEEELEELREELAEL 458
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
313-514 |
1.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 313 VSSQSADAQEQVEGLLAEN----NALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQ-- 386
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLqqeiAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEia 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 387 -LQESLRAN----SRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELA------METLQEKSQHKEELGAVRLRHE 455
Cdd:COG4942 94 eLRAELEAQkeelAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAparreqAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16758652 456 KEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 514
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
185-432 |
1.58e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 185 LAEVELKWEMEREEKKLLWEQLQGLesSKQAETSRLQEELAKlsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 264
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQA--NGELEKASREETFAR--TALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 265 A---DLKAQL-ARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgllAENNALRT---- 336
Cdd:pfam12128 682 ErlnSLEAQLkQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK---AELKALETwykr 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 337 SLAAL---EQIQTAKTQELNMLrEQNTELAAELKHRQADYEELMG-----QKDDLNSQLQESLRANSRLLEQLQEMGQEK 408
Cdd:pfam12128 759 DLASLgvdPDVIAKLKREIRTL-ERKIERIAVRRQEVLRYFDWYQetwlqRRPRLATQLSNIERAISELQQQLARLIADT 837
|
250 260
....*....|....*....|....
gi 16758652 409 EQLIQDLQEARKSAEKRKVMLDEL 432
Cdd:pfam12128 838 KLRRAKLEMERKASEKQQVRLSEN 861
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
255-473 |
1.68e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 255 KIEEL-QQRKEADLKA-----QLARTQKLQQELEAAN-QSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGL 327
Cdd:PHA02562 175 KIRELnQQIQTLDMKIdhiqqQIKTYNKNIEEQRKKNgENIARKQNKYD-ELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 328 LAENNALRTSLAALE-QIQTAkTQELNMLRE--------QN--------TELAAELKHRQADYEELMGQKDDLNSQLQES 390
Cdd:PHA02562 254 SAALNKLNTAAAKIKsKIEQF-QKVIKMYEKggvcptctQQisegpdriTKIKDKLKELQHSLEKLDTAIDELEEIMDEF 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 391 LRANSRLLEQLQEMGQEKeqliQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAvrLRHEKEMLGV-RARYEREL 469
Cdd:PHA02562 333 NEQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAK--LQDELDKIVKtKSELVKEK 402
|
....
gi 16758652 470 RELH 473
Cdd:PHA02562 403 YHRG 406
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
219-512 |
1.68e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 219 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsRNKIEELQQRKEAD-LKAQLArtqKLQQELEA----------ANQS 287
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLA------EAEARLEAAEEEVDsLKSQLA---DYQQALDVqqtraiqyqqAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 288 LAELRDQRQGERL------EHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAktqelnMLREQNTE 361
Cdd:COG3096 422 LEKARALCGLPDLtpenaeDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGE------VERSQAWQ 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 362 LAAELKHRQADYEELMGQKDDLNSQLQEslransrlLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKS 441
Cdd:COG3096 496 TARELLRRYRSQQALAQRLQQLRAQLAE--------LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16758652 442 QHKEELgavrlrhekemlgvraryeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVH 512
Cdd:COG3096 568 ELEEQA-------------------AEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSG 619
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
227-321 |
1.78e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 42.01 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 227 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ---- 296
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMiaev 423
|
90 100 110
....*....|....*....|....*....|
gi 16758652 297 GERLEHAAALRALQDQVSS-----QSADAQ 321
Cdd:PRK06975 424 EQMLSSASQQLQLTGNVQLalialQNADAR 453
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
211-343 |
2.04e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 211 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQtekETLfndsrnkieelqqrkeADLKAQLARTQKLQQELEAANQSLAE 290
Cdd:PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQ---DSV----------------ANLRASLSAAEAERSRLQALLAELAG 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 16758652 291 LRDQRQGERLEHAAALRALQDQvssqSADAQEQVEGLLAENNALRTSLAALEQ 343
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQV----SARALAQVELLNQQIAALRRQLAALEA 158
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
193-423 |
2.06e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 193 EMEREEKKLLWEQLqGLESSKQAETSRLQEELAKLSEKLKKKQESFCR---LQTEKETLFNDSRNKIEELQQRKEADLKA 269
Cdd:pfam17380 357 ERKRELERIRQEEI-AMEISRMRELERLQMERQQKNERVRQELEAARKvkiLEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 270 QLARTQKlQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGL---LAENNALRTSLAALEQIQT 346
Cdd:pfam17380 436 EVRRLEE-ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQrrkILEKELEERKQAMIEEERK 514
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16758652 347 AKTQELNMlREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAE 423
Cdd:pfam17380 515 RKLLEKEM-EERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
189-496 |
2.24e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 189 ELKWEMEREEKKLLWEQLQGLESSKQAETSRL--QEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK--- 263
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLlkQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkv 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 264 EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQ 343
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 344 IQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAE 423
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK 948
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16758652 424 KRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 496
Cdd:pfam02463 949 EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
214-683 |
2.57e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 214 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDEL----EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLA 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 294 QRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNT-----------EL 362
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSniparllalrdAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 363 AAELKHRQADYE---ELMGQKDD-----------LNSQ----------LQESLRA-NSRLLEQ----LQEMGQEKEQLIQ 413
Cdd:COG4913 450 AEALGLDEAELPfvgELIEVRPEeerwrgaiervLGGFaltllvppehYAAALRWvNRLHLRGrlvyERVRTGLPDPERP 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 414 DLQE---ARKSAEKRKVMLDELAMETLQEKSQHK----EELGAVRL-------------RHEKemlGVRARYEREL---- 469
Cdd:COG4913 530 RLDPdslAGKLDFKPHPFRAWLEAELGRRFDYVCvdspEELRRHPRaitragqvkgngtRHEK---DDRRRIRSRYvlgf 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 470 --RELHEDKKRQEEELRGQIREEKARTRELENLQHTVEElQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCR 547
Cdd:COG4913 607 dnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-RREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 548 -----EQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRAD 622
Cdd:COG4913 686 dlaalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16758652 623 KLQERLQEILTNSKSRTG-LEELVLSEMNS-----PSRTQTGDSSSVSSFSYREILKEKESSAIPAR 683
Cdd:COG4913 766 ELRENLEERIDALRARLNrAEEELERAMRAfnrewPAETADLDADLESLPEYLALLDRLEEDGLPEY 832
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
221-421 |
2.68e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.51 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 221 QEELAKLSEKLKKKQESFCRlQTEKETLFNDSRNKIEELQQRKE---ADLKAQLARTQKLQQE--LEAANQSLAELrdQR 295
Cdd:pfam13779 508 DEEIAKLMQELREALDDYMQ-ALAEQAQQNPQDLQQPDDPNAQEmtqQDLQRMLDRIEELARSgrRAEAQQMLSQL--QQ 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 296 QGERLEhAAALRALQDQVSSQSADAQEQVEGLLAENNAL-----RTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQ 370
Cdd:pfam13779 585 MLENLQ-AGQPQQQQQQGQSEMQQAMDELGDLLREQQQLldetfRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQ 663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16758652 371 ADYEELMGQKDDLNSQlQESLRanSRLLEQLQEMGQEK-EQLIQDLQEARKS 421
Cdd:pfam13779 664 MPPQGGAEALGDLAER-QQALR--RRLEELQDELKELGgKEPGQALGDAGRA 712
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1-717 |
2.87e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 1 MAQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEV-EVLLSEKEMLQ 79
Cdd:pfam02463 216 KEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLqEEELKLLAKEE 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 80 AKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaAGPHVDGELLRLQAENTALQKNMAALQERYGKEAV 159
Cdd:pfam02463 296 EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKE-----EIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 160 RPSAVsegqgdppgdvlpislspmpLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFC 239
Cdd:pfam02463 371 LEEEL--------------------LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 240 RLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSAD 319
Cdd:pfam02463 431 ILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 320 AQEQVEGLLAENNALRTSL---AALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSR 396
Cdd:pfam02463 511 VLLALIKDGVGGRIISAHGrlgDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 397 LLEQLQEMGQEKEQLIQDLQEARK--SAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHE 474
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEadEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 475 DKKRQEEELRGQIREEkartRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAEL 554
Cdd:pfam02463 671 LTKELLEIQELQEKAE----SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 555 KGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTN 634
Cdd:pfam02463 747 EEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 635 SKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAET 714
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
...
gi 16758652 715 QQE 717
Cdd:pfam02463 907 QKL 909
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
185-341 |
4.20e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 185 LAEVELKWEMEREEKKLLWE--QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQR 262
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEfcQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16758652 263 KEADLKAQlARTQKLQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLAAL 341
Cdd:COG3096 601 APAWLAAQ-DALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQIERLSQPGGAEDPRLLAL 677
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
244-566 |
4.79e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 244 EKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEhAAALRALQDQVSSQSADAQEQ 323
Cdd:COG4372 10 KARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEE-LEQARSELEQLEEELEELNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 324 VEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQE 403
Cdd:COG4372 89 LQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 404 MGQEKEQLiqDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEEL 483
Cdd:COG4372 169 LEQELQAL--SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 484 RGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQN 563
Cdd:COG4372 247 DKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAK 326
|
...
gi 16758652 564 VRD 566
Cdd:COG4372 327 KLE 329
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
222-446 |
4.80e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 40.47 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 222 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 301
Cdd:pfam03528 4 EDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 302 HAAALRALQDQVSSQSADAQEQVEGLLAENNalrtslaaleqiQTAKTQELNMLREQNTELAAELKHRQADYEElmgqKD 381
Cdd:pfam03528 84 ATVSENTKQEAIDEVKSQWQEEVASLQAIMK------------ETVREYEVQFHRRLEQERAQWNQYRESAERE----IA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16758652 382 DLNSQLQEslransrlleqlqemGQEKEQLIQDLQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 446
Cdd:pfam03528 148 DLRRRLSE---------------GQEEENLEDEMKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
262-457 |
5.23e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 262 RKEADLKAQLARTQKLQQELEAANQSLAElrdQRQGERLEHAAALRalqdqvSSQSADAQEQVEGLLAENNALRTSLaal 341
Cdd:COG3096 502 RRYRSQQALAQRLQQLRAQLAELEQRLRQ---QQNAERLLEEFCQR------IGQQLDAAEELEELLAELEAQLEEL--- 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 342 eqiqtakTQELNMLREQNTELAAELKHRQADYEElmgqkddLNSQLQESLRANSRlLEQLQEMGQEKEQLIQDLQEARks 421
Cdd:COG3096 570 -------EEQAAEAVEQRSELRQQLEQLRARIKE-------LAARAPAWLAAQDA-LERLREQSGEALADSQEVTAAM-- 632
|
170 180 190
....*....|....*....|....*....|....*.
gi 16758652 422 aekrkvmldELAMETLQEKSQHKEELGAVRLRHEKE 457
Cdd:COG3096 633 ---------QQLLEREREATVERDELAARKQALESQ 659
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
186-648 |
5.26e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 186 AEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQE-------ELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEE 258
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 259 LQQ------RKEADLKAQLARTQKLQQELEAANQSLAELR---DQRQGERLEHAAALRALQDQVSSQsadAQEQVEGLLA 329
Cdd:pfam15921 379 LQKlladlhKREKELSLEKEQNKRLWDRDTGNSITIDHLRrelDDRNMEVQRLEALLKAMKSECQGQ---MERQMAAIQG 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 330 ENNALRTSLAALEQIQTAKtqelNMLREQNTELAAelkhRQADYEELMGQKDDLNSQLQESLRA-----------NSRLL 398
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTK----EMLRKVVEELTA----KKMTLESSERTVSDLTASLQEKERAieatnaeitklRSRVD 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 399 EQLQEMGQEKEQLiQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKEMLGVRARYERELR----EL 472
Cdd:pfam15921 528 LKLQELQHLKNEG-DHLRNVQTECEALKLQMAEKdkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINdrrlEL 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 473 HEDKKRQEEElRGQIREEKARTRELEnlQHTVEELQAQVHSMDGAKGWFERR----------------LKEAEESLLQQE 536
Cdd:pfam15921 607 QEFKILKDKK-DAKIRELEARVSDLE--LEKVKLVNAGSERLRAVKDIKQERdqllnevktsrnelnsLSEDYEVLKRNF 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 537 QEQEETLKQCREQHAAELKGKEEELQNVRDQLqQAQEERDGH-VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKR 612
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTL-KSMEGSDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANK 762
|
490 500 510
....*....|....*....|....*....|....*.
gi 16758652 613 QLHLERKRADKLQERLQEILTNSKSRTGLEELVLSE 648
Cdd:pfam15921 763 EKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
195-605 |
5.82e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 195 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrnKIEELQQRKEaDLKAQLART 274
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE--------RLEELKKKLK-ELEKRLEEL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 275 QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENNALRTSLA----ALEQIQTAKT- 349
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKelkkAIEELKKAKGk 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 350 -----------QELNMLREQNTELA---AELKHRQADYEELMGQKDDLNSQL--QESLRANSRLLEQLQEMGQE-KEQLI 412
Cdd:PRK03918 438 cpvcgrelteeHRKELLEEYTAELKrieKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKlKKYNL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 413 QDLQEARKSAEKRKVMLDELAME--TLQEKSQHKEELGAVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIRE- 489
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEikSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKEl 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 490 -------------EKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKG 556
Cdd:PRK03918 598 epfyneylelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 16758652 557 KEEELQNVRDQLQQAQeerdghvKTISNLKQEVKDTVDGQRILEKKGSA 605
Cdd:PRK03918 678 LRAELEELEKRREEIK-------KTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
192-447 |
5.84e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.01 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 192 WEMEREEKKLLwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQL 271
Cdd:pfam05667 222 WEEEWNSQGLA-SRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRF 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 272 ARTQKLQ--QELEAANQSLAELRDQRQGERLEHAAALRALQDQVSsqsaDAQEQVEGLLAENNALRTSLAALEQiqtakt 349
Cdd:pfam05667 301 THTEKLQftNEAPAATSSPPTKVETEEELQQQREEELEELQEQLE----DLESSIQELEKEIKKLESSIKQVEE------ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 350 qELNMLREQNTELAAELKHRQADYEELmgQKDDLN-SQLQESLRANSRLLEQL-QEMGQEKEQLIQDLQE----ARKSAE 423
Cdd:pfam05667 371 -ELEELKEQNEELEKQYKVKKKTLDLL--PDAEENiAKLQALVDASAQRLVELaGQWEKHRVPLIEEYRAlkeaKSNKED 447
|
250 260
....*....|....*....|....*....
gi 16758652 424 KRKVMLDELA-----METLQEKSQHKEEL 447
Cdd:pfam05667 448 ESQRKLEEIKelrekIKEVAEEAKQKEEL 476
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
310-501 |
6.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 310 QDQVSSQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLNSQLQE 389
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 390 SLRANSRL---------------LEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDelamETLQEKSQHKEELGAVRlrh 454
Cdd:COG3883 98 SGGSVSYLdvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELE----AKLAELEALKAELEAAK--- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16758652 455 eKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 501
Cdd:COG3883 171 -AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
253-510 |
7.17e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.01 E-value: 7.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 253 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQVSSQSADAQ 321
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 322 EQVEgllaennalrtslaaLEQIQTAKTQELNMLREQNTELAAELKHrqadYEELMGQKDDLNSQLQESLRANSRLLEQL 401
Cdd:pfam05667 322 KVET---------------EEELQQQREEELEELQEQLEDLESSIQE----LEKEIKKLESSIKQVEEELEELKEQNEEL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 402 QEMGQEKEQLIQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEElgavrlrHEKEMLgvrARYeRELRELHEDKKRQEE 481
Cdd:pfam05667 383 EKQYKVKKKTLDLLPDAEENIAKLQALVDASA-QRLVELAGQWEK-------HRVPLI---EEY-RALKEAKSNKEDESQ 450
|
250 260
....*....|....*....|....*....
gi 16758652 482 ELRGQIREEKARTRELENLQHTVEELQAQ 510
Cdd:pfam05667 451 RKLEEIKELREKIKEVAEEAKQKEELYKQ 479
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
8-729 |
7.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 8 EEFQRMQTQLLELRTnnYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKskKAQEVEVLLSEKEMLQAKLHSQEE 87
Cdd:TIGR02169 211 ERYQALLKEKREYEG--YELLKEKEALERQKEAIERQLASLEEELEKLTEEISE--LEKRLEEIEQLLEELNKKIKDLGE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 88 DFRLQNSTLMAEFSKLCSQLE-QLELENRQLKEgvpgaagphVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVSE 166
Cdd:TIGR02169 287 EEQLRVKEKIGELEAEIASLErSIAEKERELED---------AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 167 gQGDPPGDVLPISLSPmpLAEVELKWEMEREEKKLLWEQLQGLESSK---QAETSRLQEELAKLSEKLKKKQESFCRLQT 243
Cdd:TIGR02169 358 -EYAELKEELEDLRAE--LEEVDKEFAETRDELKDYREKLEKLKREInelKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 244 EKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALrALQDQVSSQSADAQEQ 323
Cdd:TIGR02169 435 KINELEEEKEDKALEIKK-QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE-AQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 324 VEGLLAENNALRTSLAALEQ--------IQTAKTQELNMLREQNTELAAE----LKHRQADYEELMgqkdDLNSqlqesL 391
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAQLGSvgeryataIEVAAGNRLNNVVVEDDAVAKEaielLKRRKAGRATFL----PLNK-----M 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 392 RANSRLLEQLQEMGQEKEQLiqDLQEARKSAEK--RKVMLDELAMETLQEKSQHKEELGAVRLRHEK-EMLGVRARYERE 468
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAV--DLVEFDPKYEPafKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELfEKSGAMTGGSRA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 469 LRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCrE 548
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL-E 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 549 QHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDtvdgqrILEKKGSAVLKDLKRQLHLERKRADKLQERL 628
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND------LEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 629 QEILTNSKSRTGLEELVLSEMNspsrtqtgdsssvSSFSYREILKEKESSAiparslssspqaqpPRPAELSDEEVAELF 708
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQ-------------ELQEQRIDLKEQIKSI--------------EKEIENLNGKKEELE 867
|
730 740
....*....|....*....|.
gi 16758652 709 QRLAETQQEKWMLEEKVKHLE 729
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLK 888
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
388-621 |
7.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 388 QESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHekemlgvrARYER 467
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL--------AELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 468 ELRELHEDKKRQEEELRGQIRE-EKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLLQQEQEQEETLKQc 546
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL- 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16758652 547 rEQHAAELKGKEEELQNVRDQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRA 621
Cdd:COG4942 170 -EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
204-422 |
8.10e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 204 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRkEADLKAQLARTQKLQQELEA 283
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAE-IEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 284 ANQSLAELRDQRQ-GERLEHAAALRALQDQVSS---QSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQN 359
Cdd:COG3883 101 SVSYLDVLLGSESfSDFLDRLSALSKIADADADlleELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16758652 360 TELAAELKHRQADYEELMGQKDDLNSQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSA 422
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
222-524 |
9.17e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 39.28 E-value: 9.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 222 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNkIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLE 301
Cdd:pfam19220 41 RELPQAKSRLLELEALLAQERAAYGKLRRELAG-LTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR-IELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 302 HAAALRAlqdqvssQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKD 381
Cdd:pfam19220 119 QAEALER-------QLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 382 DLNSQLQEslraNSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKvmldELAMETLQ-EKSQHKEELGAVRLRH---EKE 457
Cdd:pfam19220 192 ELTRRLAE----LETQLDATRARLRALEGQLAAEQAERERAEAQL----EEAVEAHRaERASLRMKLEALTARAaatEQL 263
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16758652 458 MLGVRARyereLRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERR 524
Cdd:pfam19220 264 LAEARNQ----LRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEER 326
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
250-574 |
9.44e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 250 NDSRNKIEElqqrkEADLKAQLARTQKlqqELEAANQSLAELRDqrqgERLEHAAALRALQDQVSSQSADAQEQVEGLLA 329
Cdd:PRK04863 279 NERRVHLEE-----ALELRRELYTSRR---QLAAEQYRLVEMAR----ELAELNEAESDLEQDYQAASDHLNLVQTALRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 330 ENNALRTSlAALEQIqTAKTQELNMLREQNTELAAELKHRQADYEElmgQKDDLNSQLQESLRAnsrlLEQLQEMGQEKE 409
Cdd:PRK04863 347 QEKIERYQ-ADLEEL-EERLEEQNEVVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 410 QLIQDLQEARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKEMLGV----RARYERELRELH--------EDKK 477
Cdd:PRK04863 418 QAVQALERAKQLCGLPDLTADNA--EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAW 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758652 478 RQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAkgwfERRLKEAEESLLQQEQEQEETLKqCREQHAAELKGK 557
Cdd:PRK04863 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA----ERLLAEFCKRLGKNLDDEDELEQ-LQEELEARLESL 570
|
330 340
....*....|....*....|
gi 16758652 558 EEELQNVRDQ---LQQAQEE 574
Cdd:PRK04863 571 SESVSEARERrmaLRQQLEQ 590
|
|
| |
