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Conserved domains on  [gi|403310678|ref|NP_445828|]
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kinesin-like protein KIF2A [Rattus norvegicus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
222-550 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 381
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 459
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 460 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 539
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 403310678 540 LNTLRYANRVK 550
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
222-550 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 381
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 459
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 460 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 539
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 403310678 540 LNTLRYANRVK 550
Cdd:cd01367  318 LNTLRYADRVK 328
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
222-557 1.13e-132

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 394.63  E-value: 1.13e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   222 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 298
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   299 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 378
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   379 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 450
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   451 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 528
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....*....
gi 403310678   529 ISPGMASCENTLNTLRYANRVKELTVDPT 557
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPI 333
Kinesin pfam00225
Kinesin motor domain;
228-551 3.57e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 3.57e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  228 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 307
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  308 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 383
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  384 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 455
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  456 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 534
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 403310678  535 SCENTLNTLRYANRVKE 551
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
225-552 5.87e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.91  E-value: 5.87e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 225 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:COG5059    9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 380
Cdd:COG5059   87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 381 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 455
Cdd:COG5059  160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 456 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 532
Cdd:COG5059  240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                        330       340
                 ....*....|....*....|
gi 403310678 533 MASCENTLNTLRYANRVKEL 552
Cdd:COG5059  317 SNSFEETINTLKFASRAKSI 336
PLN03188 PLN03188
kinesin-12 family protein; Provisional
225-550 3.87e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.78  E-value: 3.87e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  225 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 304
Cdd:PLN03188  102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  305 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 375
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  376 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL--RRKGKLHG-- 450
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  451 -----KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 520
Cdd:PLN03188  325 sfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                         330       340       350
                  ....*....|....*....|....*....|
gi 403310678  521 SRTCMIATISPGMASCENTLNTLRYANRVK 550
Cdd:PLN03188  403 AKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
222-550 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 381
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 459
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 460 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 539
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 403310678 540 LNTLRYANRVK 550
Cdd:cd01367  318 LNTLRYADRVK 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
222-550 1.85e-137

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 406.64  E-value: 1.85e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKEtQMKDLDVITIPSKDVVMVHEPKQkvdltRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKN-----RVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN--R 379
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPD-----PEQRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 380 KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL-------HGKF 452
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 453 SLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISP 531
Cdd:cd00106  230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 403310678 532 GMASCENTLNTLRYANRVK 550
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
222-557 1.13e-132

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 394.63  E-value: 1.13e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   222 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 298
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   299 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 378
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   379 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 450
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678   451 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 528
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....*....
gi 403310678   529 ISPGMASCENTLNTLRYANRVKELTVDPT 557
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPI 333
Kinesin pfam00225
Kinesin motor domain;
228-551 3.57e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 3.57e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  228 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 307
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  308 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 383
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  384 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 455
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  456 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 534
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 403310678  535 SCENTLNTLRYANRVKE 551
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
222-552 5.93e-89

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 281.93  E-value: 5.93e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVmVHEPKQKVDLTRYLEN------------QTFRFDYAFDDSAPNEMVY 289
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHML-VFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 290 RFTARPLVETIFERGMATCFAYGQTGSGKTHTMggdfSGKNQDcsKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIY 369
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTM----LGTPQE--PGLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIY 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 370 SGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL 448
Cdd:cd01370  153 NETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKT 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 449 H--------GKFSLIDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRAL---GRNKPHTPFRASKLTQVLRDSf 516
Cdd:cd01370  233 AsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALadpGKKNKHIPYRDSKLTRLLKDS- 309
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 403310678 517 IGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 552
Cdd:cd01370  310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
225-548 6.27e-82

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 263.42  E-value: 6.27e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 225 VCVRKRPLNKKEtqmkdldvITIPSKDVVMVHEPKQKVDLTRyleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 304
Cdd:cd01372    5 VAVRVRPLLPKE--------IIEGCRICVSFVPGEPQVTVGT---DKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 305 MATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVF-LMLKKPNYKKLELQVYatFFEIYSGKVFDLLNRKTK- 382
Cdd:cd01372   74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkKIEKKKDTFEFQLKVS--FLEIYNEEIRDLLDPETDk 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 383 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------------ 447
Cdd:cd01372  152 kptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsaddk 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 448 ---LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALG---RNKPHTPFRASKLTQVLRDSfIGENS 521
Cdd:cd01372  232 nstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGNS 309
                        330       340
                 ....*....|....*....|....*..
gi 403310678 522 RTCMIATISPGMASCENTLNTLRYANR 548
Cdd:cd01372  310 HTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
223-552 6.04e-80

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 257.65  E-value: 6.04e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 223 ICVCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKqkvdltryleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 302
Cdd:cd01374    2 ITVTVRVRPLNSREIGINE-QVAWEIDNDTIYLVEPP----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 303 RGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLN-RKT 381
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGDED------EPGIIPLAIRDIFSKIQDTPDREFLLRV--SYLEIYNEKINDLLSpTSQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH--------GKFS 453
Cdd:cd01374  143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvrvSTLN 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 454 LIDLAGNERGADT-SSADRqtRLEGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSFIGeNSRTCMIATIS 530
Cdd:cd01374  223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLSEGKVggHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                        330       340
                 ....*....|....*....|..
gi 403310678 531 PGMASCENTLNTLRYANRVKEL 552
Cdd:cd01374  300 PAESHVEETLNTLKFASRAKKI 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
222-550 8.07e-77

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 250.73  E-value: 8.07e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQ-KVDLTRYLENQTFRFDYAFD--DS-----APNEMVYRFTA 293
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYWshDSedpnyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 294 RPLVETIFErGMATC-FAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGK 372
Cdd:cd01365   82 EELLQHAFE-GYNVClFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEK 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 373 VFDLLNRKTK-----LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK-- 445
Cdd:cd01365  155 VRDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrh 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 446 -------GKLHGKFSLIDLAGNERgADTSSADrQTRL-EGAEINKSLLALKECIRAL--------GRNKPHTPFRASKLT 509
Cdd:cd01365  235 daetnltTEKVSKISLVDLAGSER-ASSTGAT-GDRLkEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDSVLT 312
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 403310678 510 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 550
Cdd:cd01365  313 WLLKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
223-550 2.09e-73

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 240.31  E-value: 2.09e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 223 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 302
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATSE---------TGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 303 RGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLLN-RKT 381
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIYS-MDENLEFHVKVSYFEIYMEKIRDLLDvSKT 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGKFSLID 456
Cdd:cd01369  151 NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENvetekKKSGKLYLVD 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 457 LAGNERgADTSSADRQTRLEGAEINKSLLALKECIRALG-RNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGMAS 535
Cdd:cd01369  231 LAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYN 308
                        330
                 ....*....|....*
gi 403310678 536 CENTLNTLRYANRVK 550
Cdd:cd01369  309 ESETLSTLRFGQRAK 323
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
225-550 1.67e-72

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 238.51  E-value: 1.67e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 225 VCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFER 303
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKA----TANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 304 GMATCFAYGQTGSGKTHTMGGDfsgKNQDCSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL--NRKT 381
Cdd:cd01371   81 YNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLLgkDQTK 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR-----KGKLH---GKFS 453
Cdd:cd01371  157 RLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvGKLN 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 454 LIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSfIGENSRTCMIATISPG 532
Cdd:cd01371  237 LVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKsTHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGPA 314
                        330
                 ....*....|....*...
gi 403310678 533 MASCENTLNTLRYANRVK 550
Cdd:cd01371  315 DYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
223-550 1.30e-69

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 230.56  E-value: 1.30e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 223 ICVCVRKRPLNKKEtQMKDLDVITIPSkdvvmvhEPKQKVDLTR-YLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIF 301
Cdd:cd01366    4 IRVFCRVRPLLPSE-ENEDTSHITFPD-------EDGQTIELTSiGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ErGMATC-FAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-- 378
Cdd:cd01366   75 D-GYNVCiFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLApg 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 379 --RKTKLRVLEDG-KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR-----RKGKLHG 450
Cdd:cd01366  148 naPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrnlqTGEISVG 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 451 KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGeNSRTCMIATIS 530
Cdd:cd01366  228 KLNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNIS 305
                        330       340
                 ....*....|....*....|
gi 403310678 531 PGMASCENTLNTLRYANRVK 550
Cdd:cd01366  306 PAESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
220-550 5.77e-68

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 226.82  E-value: 5.77e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 220 EHRICVCVRKRPLNKKETQMKDLDVITI--PSKDVVMVHEPKQKVDLTRylenqTFRFDYAFDDSAPNEMVYRFTARPLV 297
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 298 ETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN-----QDCSKGIYALAARDVFlmlkkpnyKKLELQ-----VYATFFE 367
Cdd:cd01364   76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSPNEeytweLDPLAGIIPRTLHQLF--------EKLEDNgteysVKVSYLE 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 368 IYSGKVFDLL----NRKTKLRVLED--GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQII 441
Cdd:cd01364  148 IYNEELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSIT 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 442 LRRK------------GKLHgkfsLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 509
Cdd:cd01364  228 IHIKettidgeelvkiGKLN----LVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERAPHVPYRESKLT 302
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 403310678 510 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 550
Cdd:cd01364  303 RLLQDS-LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
225-552 5.87e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.91  E-value: 5.87e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 225 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:COG5059    9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 380
Cdd:COG5059   87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 381 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 455
Cdd:COG5059  160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 456 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 532
Cdd:COG5059  240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                        330       340
                 ....*....|....*....|
gi 403310678 533 MASCENTLNTLRYANRVKEL 552
Cdd:COG5059  317 SNSFEETINTLKFASRAKSI 336
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
227-550 1.74e-55

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 192.80  E-value: 1.74e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 227 VRKRPLNKKETQMKDLDvitiPSKDVVMVHEPKqkvDLTR-YLENQ----TFRFDYAFDDsAPNEMVYRFTARPLVETIF 301
Cdd:cd01375    6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQqedwSFKFDGVLHN-ASQELVYETVAKDVVSSAL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLNRK- 380
Cdd:cd01375   78 AGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFRMIEERPTKAYTVHV--SYLEIYNEQLYDLLSTLp 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 381 ------TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 447
Cdd:cd01375  153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 448 LHGKFSLIDLAGNERGADTSSADrQTRLEGAEINKSLLALKECIRALGR-NKPHTPFRASKLTQVLRDSfIGENSRTCMI 526
Cdd:cd01375  233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSDkDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                        330       340
                 ....*....|....*....|....
gi 403310678 527 ATISPGMASCENTLNTLRYANRVK 550
Cdd:cd01375  311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
221-550 4.21e-53

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 186.95  E-value: 4.21e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 221 HRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKvdltrylenqTFRFDYAFDDSAPNEMVYRFTARPLVETI 300
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPK----------TFTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 301 FERGMATCFAYGQTGSGKTHTMGGDfSGKNQDCSKGIYALAARdVFLML-------KKPNYKKLELQVYATFFEIYSGKV 373
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPR-IFEYLfsliqreKEKAGEGKSFLCKCSFLEIYNEQI 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 374 FDLLNR-KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-- 450
Cdd:cd01373  149 YDLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfv 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 451 -----KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRAL-----GRNKpHTPFRASKLTQVLRDSfIGEN 520
Cdd:cd01373  229 nirtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALvdvahGKQR-HVCYRDSKLTFLLRDS-LGGN 305
                        330       340       350
                 ....*....|....*....|....*....|
gi 403310678 521 SRTCMIATISPGMASCENTLNTLRYANRVK 550
Cdd:cd01373  306 AKTAIIANVHPSSKCFGETLSTLRFAQRAK 335
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
225-546 6.95e-52

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 183.36  E-value: 6.95e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 225 VCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTR-----YLENQtFRFDYAFDDSAPNEMVYRFTARPLVET 299
Cdd:cd01368    5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSernggQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 300 IFERGMATCFAYGQTGSGKTHTMGGdfsgknqdcSKGIYALAARDVFLMLKK-PNYkklelQVYATFFEIYSGKVFDLLN 378
Cdd:cd01368   84 LLHGKNGLLFTYGVTNSGKTYTMQG---------SPGDGGILPRSLDVIFNSiGGY-----SVFVSYIEIYNEYIYDLLE 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 379 --------RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQI-ILRRKGKLH 449
Cdd:cd01368  150 pspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSD 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 450 G------------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRN-----KPHTPFRASKLTQVL 512
Cdd:cd01368  230 GdvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLF 308
                        330       340       350
                 ....*....|....*....|....*....|....
gi 403310678 513 RDSFIGEnSRTCMIATISPGMASCENTLNTLRYA 546
Cdd:cd01368  309 QNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
222-550 1.29e-50

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 179.24  E-value: 1.29e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 222 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPkqkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 301
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 302 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKkleLQVYATFFEIYSGKVFDLLNRKT 381
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGSPE------QPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEPAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 382 K-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL------HGKFSL 454
Cdd:cd01376  146 KeLVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 455 IDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGM 533
Cdd:cd01376  226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                        330
                 ....*....|....*..
gi 403310678 534 ASCENTLNTLRYANRVK 550
Cdd:cd01376  303 TFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
225-550 3.87e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.78  E-value: 3.87e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  225 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 304
Cdd:PLN03188  102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  305 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 375
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  376 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL--RRKGKLHG-- 450
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  451 -----KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 520
Cdd:PLN03188  325 sfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                         330       340       350
                  ....*....|....*....|....*....|
gi 403310678  521 SRTCMIATISPGMASCENTLNTLRYANRVK 550
Cdd:PLN03188  403 AKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
263-531 1.76e-12

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 66.21  E-value: 1.76e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 263 DLTRYLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIFE-RGMATCFAYGQTGSGKTHTMggdfsgknqdcsKGIYALA 341
Cdd:cd01363   10 ELPIYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDgYNNQSIFAYGESGAGKTETM------------KGVIPYL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 342 ARDVFlmlkkpnykklelqvyatffeiysgkvfdllNRKTKLRVLEDgkqqvqvVGLQEREVKCVEDVLKLIDIGNSCRT 421
Cdd:cd01363   77 ASVAF-------------------------------NGINKGETEGW-------VYLTEITVTLEDQILQANPILEAFGN 118
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678 422 SgQTSANAHSSRSHAVFQIILrrkgklhgkfsliDLAGNERgadtssadrqtrlegaeINKSLLALKECIRAlgrnkpht 501
Cdd:cd01363  119 A-KTTRNENSSRFGKFIEILL-------------DIAGFEI-----------------INESLNTLMNVLRA-------- 159
                        250       260       270
                 ....*....|....*....|....*....|
gi 403310678 502 pfraskltqvlrdsfigenSRTCMIATISP 531
Cdd:cd01363  160 -------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
218-377 1.87e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 42.21  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  218 IDEHR--ICVCVRKRPLNKKETQmkdldvITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTaRP 295
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403310678  296 LVETIFeRGMATC-FAYGQTGSGKTHTMggdfsgknqdcskgiyALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVF 374
Cdd:pfam16796  79 LVQSCL-DGYNVCiFAYGQTGSGSNDGM----------------IPRAREQIFRFISSLKKGWKYTIELQFVEIYNESSQ 141

                  ...
gi 403310678  375 DLL 377
Cdd:pfam16796 142 DLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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