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Conserved domains on  [gi|15239820|ref|NP_199141|]
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squamosa promoter binding protein-like 2 [Arabidopsis thaliana]

Protein Classification

squamosa promoter-binding-like protein( domain architecture ID 10504066)

squamosa promoter-binding-like protein is an SBP domain-containing protein that might act as a transcription factor involved in the control of early flower development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SBP pfam03110
SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. ...
 169-243 1.09e-45

SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.


:

Pssm-ID: 460809  Cd Length: 75  Bit Score: 151.98  E-value: 1.09e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15239820   169 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKP 243
Cdd:pfam03110   1 CQVDGCGADLSGAKDYHRRHRVCEEHAKAPSVVVDGVEQRFCQQCSRFHPLSEFDGGKRSCRRRLARHNERRRKR 75
 
Name Accession Description Interval E-value
SBP pfam03110
SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. ...
 169-243 1.09e-45

SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.


Pssm-ID: 460809  Cd Length: 75  Bit Score: 151.98  E-value: 1.09e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15239820   169 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKP 243
Cdd:pfam03110   1 CQVDGCGADLSGAKDYHRRHRVCEEHAKAPSVVVDGVEQRFCQQCSRFHPLSEFDGGKRSCRRRLARHNERRRKR 75
 
Name Accession Description Interval E-value
SBP pfam03110
SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. ...
 169-243 1.09e-45

SBP domain; SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.


Pssm-ID: 460809  Cd Length: 75  Bit Score: 151.98  E-value: 1.09e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15239820   169 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKP 243
Cdd:pfam03110   1 CQVDGCGADLSGAKDYHRRHRVCEEHAKAPSVVVDGVEQRFCQQCSRFHPLSEFDGGKRSCRRRLARHNERRRKR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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