NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15235712|ref|NP_195493|]
View 

Homeobox-leucine zipper protein family [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
181-224 7.08e-24

homeobox associated leucin zipper;


:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 90.97  E-value: 7.08e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235712    181 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 224
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
Homeodomain pfam00046
Homeodomain;
125-179 1.92e-15

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.07  E-value: 1.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235712   125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
181-224 7.08e-24

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 90.97  E-value: 7.08e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235712    181 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 224
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
Homeodomain pfam00046
Homeodomain;
125-179 1.92e-15

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.07  E-value: 1.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235712   125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 125-179 7.54e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 67.28  E-value: 7.54e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15235712    125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 125-182 1.49e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 66.50  E-value: 1.49e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15235712 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 182
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
116-182 7.11e-13

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 64.77  E-value: 7.11e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15235712 116 HDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 182
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
181-215 7.03e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 47.90  E-value: 7.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235712   181 KQTEVDCEFLKKCCETLT-------DENRRLQKELQDLKALK 215
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
181-224 7.08e-24

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 90.97  E-value: 7.08e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235712    181 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 224
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
Homeodomain pfam00046
Homeodomain;
125-179 1.92e-15

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.07  E-value: 1.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235712   125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 125-179 7.54e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 67.28  E-value: 7.54e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15235712    125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 125-182 1.49e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 66.50  E-value: 1.49e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15235712 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 182
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
116-182 7.11e-13

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 64.77  E-value: 7.11e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15235712 116 HDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 182
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
181-215 7.03e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 47.90  E-value: 7.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235712   181 KQTEVDCEFLKKCCETLT-------DENRRLQKELQDLKALK 215
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH