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Conserved domains on  [gi|15227754|ref|NP_179865|]
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Homeobox-leucine zipper protein family [Arabidopsis thaliana]

Protein Classification

homeodomain and HALZ domain-containing protein( domain architecture ID 11267639)

homeodomain and HALZ domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
168-211 3.16e-23

homeobox associated leucin zipper;


:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.05  E-value: 3.16e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15227754    168 KQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHM 211
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 112-166 5.97e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 5.97e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15227754    112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
168-211 3.16e-23

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.05  E-value: 3.16e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15227754    168 KQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHM 211
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 112-166 5.97e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 5.97e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15227754    112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
112-166 6.49e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.22  E-value: 6.49e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15227754   112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 112-169 1.56e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.19  E-value: 1.56e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15227754 112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQ 169
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
103-210 3.59e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 68.23  E-value: 3.59e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227754 103 HEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCE 182
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGEEEA 123

                        90       100
                ....*....|....*....|....*...
gi 15227754 183 TLADENIRLQKEIQELKTLKLTQPFYMH 210
Cdd:COG5576 124 DLAKIGSLSTGQISIIETLEFSRTSYEE 151
HALZ pfam02183
Homeobox associated leucine zipper;
168-202 2.60e-07

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 46.36  E-value: 2.60e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15227754   168 KQTEVDCEFLKKCCETLA-------DENIRLQKEIQELKTLK 202
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
168-211 3.16e-23

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.05  E-value: 3.16e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15227754    168 KQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHM 211
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 112-166 5.97e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 5.97e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15227754    112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
112-166 6.49e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.22  E-value: 6.49e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15227754   112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 112-169 1.56e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.19  E-value: 1.56e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15227754 112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQ 169
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
103-210 3.59e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 68.23  E-value: 3.59e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227754 103 HEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCE 182
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGEEEA 123

                        90       100
                ....*....|....*....|....*...
gi 15227754 183 TLADENIRLQKEIQELKTLKLTQPFYMH 210
Cdd:COG5576 124 DLAKIGSLSTGQISIIETLEFSRTSYEE 151
HALZ pfam02183
Homeobox associated leucine zipper;
168-202 2.60e-07

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 46.36  E-value: 2.60e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15227754   168 KQTEVDCEFLKKCCETLA-------DENIRLQKEIQELKTLK 202
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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