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Conserved domains on  [gi|14861862|ref|NP_149086|]
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gamma-crystallin D [Rattus norvegicus]

Protein Classification

beta/gamma crystallin family protein( domain architecture ID 10644142)

beta/gamma crystallin family protein such as beta- and gamma-crystallins, which are structural components of the vertebrate eye lens

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
89-170 6.73e-43

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


:

Pssm-ID: 459639  Cd Length: 82  Bit Score: 137.63  E-value: 6.73e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862    89 RIRLYEREDYRGQMVEFTEDCPSLQDRFHFNEIYSLNVLEGCWVLYEMTNYRGRQYLLRPGEYRRYHDWGAMNARVGSLR 168
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80

                  ..
gi 14861862   169 RV 170
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
3-82 4.01e-38

Beta/gamma crystallins; Beta/gamma crystallins


:

Pssm-ID: 214583  Cd Length: 82  Bit Score: 125.31  E-value: 4.01e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862      3 KITFYEDRGFQGRHYECSTDHSNLQPYFSRCN--SVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCR 80
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNvsSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80

                   ..
gi 14861862     81 LI 82
Cdd:smart00247  81 RI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
89-170 6.73e-43

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 137.63  E-value: 6.73e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862    89 RIRLYEREDYRGQMVEFTEDCPSLQDRFHFNEIYSLNVLEGCWVLYEMTNYRGRQYLLRPGEYRRYHDWGAMNARVGSLR 168
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80

                  ..
gi 14861862   169 RV 170
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
89-170 1.05e-39

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 129.55  E-value: 1.05e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862     89 RIRLYEREDYRGQMVEFTEDCPSLQDRFHFNEIYSLNVLEGCWVLYEMTNYRGRQYLLRPGEYRRYHDWGAMNARVGSLR 168
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80

                   ..
gi 14861862    169 RV 170
Cdd:smart00247  81 RI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
3-82 4.01e-38

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 125.31  E-value: 4.01e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862      3 KITFYEDRGFQGRHYECSTDHSNLQPYFSRCN--SVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCR 80
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNvsSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80

                   ..
gi 14861862     81 LI 82
Cdd:smart00247  81 RI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
3-82 1.17e-33

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 114.13  E-value: 1.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862     3 KITFYEDRGFQGRHYECSTDHSNLQ--PYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCR 80
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQerGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80

                  ..
gi 14861862    81 LI 82
Cdd:pfam00030  81 PI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
89-170 6.73e-43

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 137.63  E-value: 6.73e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862    89 RIRLYEREDYRGQMVEFTEDCPSLQDRFHFNEIYSLNVLEGCWVLYEMTNYRGRQYLLRPGEYRRYHDWGAMNARVGSLR 168
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80

                  ..
gi 14861862   169 RV 170
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
89-170 1.05e-39

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 129.55  E-value: 1.05e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862     89 RIRLYEREDYRGQMVEFTEDCPSLQDRFHFNEIYSLNVLEGCWVLYEMTNYRGRQYLLRPGEYRRYHDWGAMNARVGSLR 168
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80

                   ..
gi 14861862    169 RV 170
Cdd:smart00247  81 RI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
3-82 4.01e-38

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 125.31  E-value: 4.01e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862      3 KITFYEDRGFQGRHYECSTDHSNLQPYFSRCN--SVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCR 80
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNvsSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80

                   ..
gi 14861862     81 LI 82
Cdd:smart00247  81 RI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
3-82 1.17e-33

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 114.13  E-value: 1.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14861862     3 KITFYEDRGFQGRHYECSTDHSNLQ--PYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCR 80
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQerGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80

                  ..
gi 14861862    81 LI 82
Cdd:pfam00030  81 PI 82
Inhibitor_I36 pfam03995
Peptidase inhibitor family I36; This domain is currently only found in a small set of S. ...
2-58 4.81e-03

Peptidase inhibitor family I36; This domain is currently only found in a small set of S. coelicolor secreted proteins. There are four conserved cysteines that probably form two disulphide bonds. Proteins 2SCK31.15C and SCO3675 also have probable beta-propellers at their C-termini. This family includes Swiss:P01077 a known peptidase inhibitor of known structure. This protein has a crystallin like fold pfam00030 and is distantly related by sequence. It is not known whether other members of this family are peptidase inhibitors.


Pssm-ID: 427638  Cd Length: 69  Bit Score: 34.28  E-value: 4.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 14861862     2 GKITFYEDRGFQGRHYECSTDHSNLQPYF-SRCNSVRVDSGCWM-LYEQPNFTGCQYFL 58
Cdd:pfam03995  11 GYFCLWSGANGTGRMAELSGSDALVGAGMnDKARSVWNRTGSWVtVYTDANYGGRLAVL 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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