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Conserved domains on  [gi|282847508|ref|NP_115816|]
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ligand-dependent corepressor isoform 1 [Homo sapiens]

Protein Classification

HTH_psq domain-containing protein( domain architecture ID 10525231)

HTH_psq domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 352-395 3.39e-11

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


:

Pssm-ID: 283007  Cd Length: 45  Bit Score: 57.70  E-value: 3.39e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 282847508  352 EILEEAISVVMSGKMSVSKAQSIYGIPHSTLeYKVKERLGTLKN 395
Cdd:pfam05225   3 EALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 352-395 3.39e-11

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 57.70  E-value: 3.39e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 282847508  352 EILEEAISVVMSGKMSVSKAQSIYGIPHSTLeYKVKERLGTLKN 395
Cdd:pfam05225   3 EALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 352-395 3.39e-11

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 57.70  E-value: 3.39e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 282847508  352 EILEEAISVVMSGKMSVSKAQSIYGIPHSTLeYKVKERLGTLKN 395
Cdd:pfam05225   3 EALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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