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Conserved domains on  [gi|21312948|ref|NP_083547|]
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large ribosomal subunit protein bL32m [Mus musculus]

Protein Classification

bL32 family ribosomal protein( domain architecture ID 10484870)

bL32 family ribosomal protein such as bacterial 50S ribosomal protein L32, mammalian mitochondrial 39S ribosomal protein L32, and fungal mitochondrial 54S ribosomal protein L32

Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803
SCOP:  4000508

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
78-135 1.51e-07

Ribosomal L32p protein family;


:

Pssm-ID: 426430  Cd Length: 56  Bit Score: 46.43  E-value: 1.51e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312948    78 AAPKNRRTIEVNRCRRRNPqkliKIKN-NIDICPECGHLKQKHVLCGYC-YEKVRQETTK 135
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHW----KLKApNLVECPNCGELKLPHRVCPSCgYYKGREVLEK 56
 
Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
78-135 1.51e-07

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 46.43  E-value: 1.51e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312948    78 AAPKNRRTIEVNRCRRRNPqkliKIKN-NIDICPECGHLKQKHVLCGYC-YEKVRQETTK 135
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHW----KLKApNLVECPNCGELKLPHRVCPSCgYYKGREVLEK 56
 
Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
78-135 1.51e-07

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 46.43  E-value: 1.51e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312948    78 AAPKNRRTIEVNRCRRRNPqkliKIKN-NIDICPECGHLKQKHVLCGYC-YEKVRQETTK 135
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHW----KLKApNLVECPNCGELKLPHRVCPSCgYYKGREVLEK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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