zinc finger protein 830 [Mus musculus]
C2H2-type zinc finger protein( domain architecture ID 11751631)
Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation
List of domain hits
Name | Accession | Description | Interval | E-value | |||
ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
49-82 | 8.09e-05 | |||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. : Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 39.54 E-value: 8.09e-05
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COG4913 super family | cl25907 | Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-355 | 8.28e-04 | |||
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; The actual alignment was detected with superfamily member COG4913: Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 8.28e-04
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PRP11 super family | cl25587 | Splicing factor 3a, subunit 2 [RNA processing and modification]; |
18-93 | 1.26e-03 | |||
Splicing factor 3a, subunit 2 [RNA processing and modification]; The actual alignment was detected with superfamily member COG5246: Pssm-ID: 227571 [Multi-domain] Cd Length: 222 Bit Score: 39.66 E-value: 1.26e-03
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Name | Accession | Description | Interval | E-value | |||
ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
49-82 | 8.09e-05 | |||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 39.54 E-value: 8.09e-05
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COG4913 | COG4913 | Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-355 | 8.28e-04 | |||
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 8.28e-04
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zf-met | pfam12874 | Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ... |
51-75 | 1.23e-03 | |||
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Pssm-ID: 463736 [Multi-domain] Cd Length: 25 Bit Score: 35.93 E-value: 1.23e-03
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PRP11 | COG5246 | Splicing factor 3a, subunit 2 [RNA processing and modification]; |
18-93 | 1.26e-03 | |||
Splicing factor 3a, subunit 2 [RNA processing and modification]; Pssm-ID: 227571 [Multi-domain] Cd Length: 222 Bit Score: 39.66 E-value: 1.26e-03
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Name | Accession | Description | Interval | E-value | |||
ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
49-82 | 8.09e-05 | |||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 39.54 E-value: 8.09e-05
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COG4913 | COG4913 | Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-355 | 8.28e-04 | |||
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 8.28e-04
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zf-met | pfam12874 | Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ... |
51-75 | 1.23e-03 | |||
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Pssm-ID: 463736 [Multi-domain] Cd Length: 25 Bit Score: 35.93 E-value: 1.23e-03
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PRP11 | COG5246 | Splicing factor 3a, subunit 2 [RNA processing and modification]; |
18-93 | 1.26e-03 | |||
Splicing factor 3a, subunit 2 [RNA processing and modification]; Pssm-ID: 227571 [Multi-domain] Cd Length: 222 Bit Score: 39.66 E-value: 1.26e-03
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zf-C2H2_jaz | pfam12171 | Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
50-76 | 2.06e-03 | |||
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization. Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 35.22 E-value: 2.06e-03
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PstA | COG4985 | ABC-type phosphate transport system, auxiliary component PstA [Inorganic ion transport and ... |
226-323 | 9.73e-03 | |||
ABC-type phosphate transport system, auxiliary component PstA [Inorganic ion transport and metabolism]; Pssm-ID: 444009 [Multi-domain] Cd Length: 545 Bit Score: 37.98 E-value: 9.73e-03
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Blast search parameters | ||||
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