|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
34-590 |
9.73e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 9.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 34 QLNHYRNVAQNARSELAATLVKFECAQSELQdlrskmlskevscqELKAEMESYKENNARKSSLLTSLRDRVQELEEESA 113
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 114 ALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDpDERNDKASDEDL 193
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE-ALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 194 ILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALERE 273
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 274 VKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEK-- 351
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAye 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 352 ----IREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLEtLQGQLTHLEAELVSGGVLRDNLNF 427
Cdd:COG1196 538 aaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL-ARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 428 EKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLL 507
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 508 RQKIAQLEEEKQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKIKTLEQTKAIEDLNKSR 587
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
...
gi 38570058 588 DQL 590
Cdd:COG1196 777 EAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-651 |
7.83e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 7.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 32 REQLNHYRNVAQNARSELAATLVKfecAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEE 111
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 112 SAALSTSKIRTEitahaaiKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDe 191
Cdd:TIGR02168 318 LEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLETLRS- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 192 dlilKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALE 271
Cdd:TIGR02168 387 ----KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 272 REVKIFQERLLAGQQVWDASKQEvsllkkssselEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTeDTILEK 351
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERE-----------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL-GVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 352 IrEMDSREESrdrmvsQLEAQISELVEQLGKESgfhqkaLQRAQKA-ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQ 430
Cdd:TIGR02168 529 I-SVDEGYEA------AIEAALGGRLQAVVVEN------LNAAKKAiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 431 KYLKFLDQLSQKMKLD------------------------QMAAELGFDMR---LDVVLARTEQLV----RLESNAVIEN 479
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDpklrkalsyllggvlvvddldnalELAKKLRPGYRivtLDGDLVRPGGVItggsAKTNSSILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 480 KTIAHNLQRKLKTQKERLESKELHMSLLRQKIAQLEEE-KQARTALVVERDNAHLT---IRNLQKKVERLQKELNTCRDL 555
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISALrkdLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 556 HTELKAKLADTNELKIKTLEQTKA----IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMievvTS 631
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL----ER 831
|
650 660
....*....|....*....|
gi 38570058 632 EMKTLKKSLEEAEKREKQLA 651
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
45-660 |
8.31e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 8.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 45 ARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELE-------EESAALST 117
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqqkqilrERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 118 SKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDedlilKL 197
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLETLRS-----KV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 198 RDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALEREVKIF 277
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 278 QERLLAGQQVWDASKQEvsllkkssselEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTeDTILEKIrEMDS 357
Cdd:TIGR02168 467 REELEEAEQALDAAERE-----------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL-GVLSELI-SVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 358 REEsrdrmvSQLEAQISELVEQLGKESgfhqkaLQRAQKA-ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYLKFL 436
Cdd:TIGR02168 534 GYE------AAIEAALGGRLQAVVVEN------LNAAKKAiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 437 DQLSQKMKLD------------------------QMAAELGFDMR---LDVVLARTEQLV----RLESNAVIENKTIAHN 485
Cdd:TIGR02168 602 GVAKDLVKFDpklrkalsyllggvlvvddldnalELAKKLRPGYRivtLDGDLVRPGGVItggsAKTNSSILERRREIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 486 LQRKLKTQKERLESKELHMSLLRQKIAQLEEE-KQARTALVVERDNAHLT---IRNLQKKVERLQKELNTCRDLHTELKA 561
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISALrkdLARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 562 KLADTNELKIKTLEQTKA----IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLK 637
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660
....*....|....*....|...
gi 38570058 638 KSLEEAEKREKQLADFREVVSQM 660
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEEL 864
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
60-376 |
1.23e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 60 QSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQELKKK 139
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 140 VVELNEKLQKCSK---ENEENKKQVSKNCRKHEEFLTQLRDCLDPDERN-DKASDE--DLILKLRDLRKENEFVKGQIVI 213
Cdd:TIGR02168 756 LTELEAEIEELEErleEAEEELAEAEAEIEELEAQIEQLKEELKALREAlDELRAEltLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 214 LEETINVHEMEAKASRETIMRLASEVNreqkkaaSCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQ 293
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIE-------ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 294 EVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRgrlsmtgSTEDTILEKIREMDSREESRDRMVSQLEAQI 373
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS-------LTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
...
gi 38570058 374 SEL 376
Cdd:TIGR02168 982 KEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
97-652 |
4.50e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 4.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 97 LLTSLRDRVQELEEESA----ALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFL 172
Cdd:COG1196 194 ILGELERQLEPLERQAEkaerYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 173 TQLrdcldpderndkasdEDLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEE 252
Cdd:COG1196 274 LEL---------------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 253 KEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQyfsfREKIAA 332
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA----EEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 333 LLRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISELVEQLGKesgfHQKALQRAQKAENMLETLQGQLTHLE 412
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL----LAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 413 AELVSGGVLRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIEN--KTIAHNLQRKL 490
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 491 KTQKERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQkkvERLQKELNTCRDLHTELKAKLADTNELK 570
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG---DTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 571 IKTLEQTKA------IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAE 644
Cdd:COG1196 648 EVTLEGEGGsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
....*...
gi 38570058 645 KREKQLAD 652
Cdd:COG1196 728 EQLEAERE 735
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
54-582 |
1.64e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 54 VKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEEsaalstskiRTEItahaaiken 133
Cdd:PRK02224 192 LKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER---------REEL--------- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 134 QELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDkASDEDLILKLRDLRKENEFVKGQIVI 213
Cdd:PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDD-ADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 214 LEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERL-LAGQQVWDAS- 291
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLGNAEd 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 292 -----KQEVSLLKKSSSELEKSLKASQDAVttsqsqyfsfREKIAALLRGRLSMTGS--TEDTILEKIREMDSREESRDR 364
Cdd:PRK02224 413 fleelREERDELREREAELEATLRTARERV----------EEAEALLEAGKCPECGQpvEGSPHVETIEEDRERVEELEA 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 365 MVSQLEAQISELVEQLGKESGFhQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKY-----LKFLDQL 439
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 440 SQKMKLDQMAAELG-FDMRLDVVLARTEQLVRLESN-AVIENKTIA-HNLQRKLKTQKERLESKELHMSLLRQKIAQLEE 516
Cdd:PRK02224 562 EAEEEAEEAREEVAeLNSKLAELKERIESLERIRTLlAAIADAEDEiERLREKREALAELNDERRERLAEKRERKRELEA 641
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38570058 517 EKQ--ARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKiktlEQTKAIED 582
Cdd:PRK02224 642 EFDeaRIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR----ERREALEN 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-661 |
1.87e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 55 KFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKS-------SLLTSLRDRVQELEEESAALSTSKIRTEITAH 127
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaqleeleSKLDELAEELAELEEKLEELKEELESLEAELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 128 AAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDEDLILKLRDLRKENEFV 207
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL---EDRRERLQQEIEELLKKLEEAELKEL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 208 KGQIVILEETInvhEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQdLLSAVEAKEALEREVKIFQE---RLLAG 284
Cdd:TIGR02168 439 QAELEELEEEL---EELQEELERLEEALEELREELEEAEQALDAAERELAQ-LQARLDSLERLQENLEGFSEgvkALLKN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 285 QQVWDASKQEVSLLKKSSSELEKSLKA-----SQDAVTTSQSQY---FSFREKIAALLRGRLSMTGSTEDTILEKIREMD 356
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEGYEAAIEAalggrLQAVVVENLNAAkkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 357 SREESRDRMVSQLEAQISELVEQLGK--------ESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFE 428
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 429 KQKYLKfldQLSQKMkldqmaaelgfdmrldvvlARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLLR 508
Cdd:TIGR02168 675 RRREIE---ELEEKI-------------------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 509 QKIAQLEEEKQARTAlvvERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKL----ADTNELKIKTLEQTKAIEDLN 584
Cdd:TIGR02168 733 KDLARLEAEVEQLEE---RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeeleAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 585 KSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNM---IEVVTSEMKTLKKSLEEAEKREKQLADFREVVSQML 661
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
32-585 |
3.71e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 32 REQLNHYRNVAQNARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEE 111
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 112 SAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDE 191
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 192 DLILKLRDLRKENEfvkgqiviLEETINVHEMEAKASRETIMRLASEVNREQKKaasctEEKEKLNQDLLSAVEAKEALE 271
Cdd:COG1196 440 EEEALEEAAEEEAE--------LEEEEEALLELLAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 272 REVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQyfSFREKIAALLRGRLS-MTGSTEDTIle 350
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE--VAAAAIEYLKAAKAGrATFLPLDKI-- 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 351 KIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQ 430
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 431 KYLKFLDQLSQKMKLDQMAAELgfdmrLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLLRQK 510
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEEL-----AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 511 IAQLEEEKQARTALVVERDNAHLTIRNLQKKVERLQK--------------ELNTCRDLHTELKAKLADTNElKIKTLEQ 576
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEReiealgpvnllaieEYEELEERYDFLSEQREDLEE-ARETLEE 816
|
....*....
gi 38570058 577 tkAIEDLNK 585
Cdd:COG1196 817 --AIEEIDR 823
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
193-442 |
4.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 193 LILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQkkaasctEEKEKLNQDLLSAVEAKEALER 272
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE-------EEIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 273 EVKIFQER--------------LLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAAL----- 333
Cdd:TIGR02168 303 QKQILRERlanlerqleeleaqLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELeeqle 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 334 -LRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISELVEQLgKESGFHQKALQRAQKAEnMLETLQGQLTHLE 412
Cdd:TIGR02168 383 tLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL-EEAELKELQAELEELEE-ELEELQEELERLE 460
|
250 260 270
....*....|....*....|....*....|
gi 38570058 413 AELVSggvLRDNLNFEKQKYLKFLDQLSQK 442
Cdd:TIGR02168 461 EALEE---LREELEEAEQALDAAERELAQL 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
130-660 |
2.39e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 130 IKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDEdLILKLRDLRKENEFVKG 209
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 210 QIVILEETINVHEMEAKASRETIMRLASEVnREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWD 289
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKV-KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 290 ASKQEVSLLKKSSSELEKsLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQL 369
Cdd:PRK03918 332 ELEEKEERLEELKKKLKE-LEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 370 EAQISELveqlGKESGFHQKALQRAQKA----------------ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYL 433
Cdd:PRK03918 411 TARIGEL----KKEIKELKKAIEELKKAkgkcpvcgrelteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 434 KFLDQLSQKMKLDQMAAEL-GFDMRLDVVLAR------------TEQLVRLESNAVIENKTI--AHNLQRKLKTQKERLE 498
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLkELEEKLKKYNLEelekkaeeyeklKEKLIKLKGEIKSLKKELekLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 499 SKELHMSLLRQKIAQL----EEEKQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRdlhTELKAKLADTNELKIKTL 574
Cdd:PRK03918 567 ELEEELAELLKELEELgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE---EELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 575 EQTKAIEDLNKSRDQleKMKEKAEKKLMSVKSELDTTEHEAKENKERarnmIEVVTSEMKTLKKSLEEAEKREKQLADFR 654
Cdd:PRK03918 644 ELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKR----REEIKKTLEKLKEELEEREKAKKELEKLE 717
|
....*.
gi 38570058 655 EVVSQM 660
Cdd:PRK03918 718 KALERV 723
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
346-577 |
1.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 346 DTILEKIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGG----VL 421
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 422 RDNLNFEKQKYLKFLDQLSQ-KMKLDQMAAELGfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESK 500
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKAlREALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 501 ELHMSLLRQKIAQLEEE-----------KQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTnEL 569
Cdd:TIGR02168 858 AAEIEELEELIEELESEleallneraslEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL-EV 936
|
....*...
gi 38570058 570 KIKTLEQT 577
Cdd:TIGR02168 937 RIDNLQER 944
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
39-650 |
1.18e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 39 RNVAQNARSEL-AATLVK---FECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKssllTSLRDRVQELEEESAA 114
Cdd:pfam15921 144 RNQLQNTVHELeAAKCLKedmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK----IYEHDSMSTMHFRSLG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 115 LSTSKIRTEITAhaaikENQELKKKVVELNEKLQKCSKENEEnkkqvskncrKHEEFLTQLRDCLDPDERNDKASDEDLI 194
Cdd:pfam15921 220 SAISKILRELDT-----EISYLKGRIFPVEDQLEALKSESQN----------KIELLLQQHQDRIEQLISEHEVEITGLT 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 195 LKLRDLRKENEFVKGQIVILEEtinvhemEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLsaveakEALEREV 274
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQE-------QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 275 KIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKiaallrgrlsMTGSTeDTILEKIRE 354
Cdd:pfam15921 352 VLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR----------DTGNS-ITIDHLRRE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 355 MDSREESRDRMVSQLEAQISELVEQLGKESGFHQ---KALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNfekqk 431
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSE----- 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 432 ylKFLDQLSQKMKLDQMAAElgfdmrldvvlARTEQLVRLESNAVIENKTIAH---------NLQRKLKTQKERLESKEL 502
Cdd:pfam15921 496 --RTVSDLTASLQEKERAIE-----------ATNAEITKLRSRVDLKLQELQHlknegdhlrNVQTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 503 HMSLLRQKIAQLEE--EKQARTALVVERDNAHLTIRNLQKKVErlQKELNTCRDLHT----ELKAKLADTNELKIKTL-- 574
Cdd:pfam15921 563 VIEILRQQIENMTQlvGQHGRTAGAMQVEKAQLEKEINDRRLE--LQEFKILKDKKDakirELEARVSDLELEKVKLVna 640
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38570058 575 --EQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQL 650
Cdd:pfam15921 641 gsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
98-415 |
2.27e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 98 LTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELneklqkcSKENEENKKQVSKNCRKHEEFLTQLRD 177
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI-------EKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 178 CldpderndKASDEDLILKLRDLRKENEFVKGQIVILEETINvhEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLN 257
Cdd:TIGR02169 749 L--------EQEIENVKSELKELEARIEELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 258 QDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAAlLRGR 337
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE-LEAQ 897
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38570058 338 LSMTGSTEDTILEKIremdsrEESRDRMvSQLEAQISELVEQLgKESGFHQKALQRAQKAENMLETLQGQLTHLEAEL 415
Cdd:TIGR02169 898 LRELERKIEELEAQI------EKKRKRL-SELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
204-652 |
8.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 204 NEFVKGQIviLEETiNVHEM--EAKASRETIMRLASEVNREQKKAASCTEEKEkLNQDLLSAVEAKEALERevkifqerL 281
Cdd:COG4913 210 DDFVREYM--LEEP-DTFEAadALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEY--------L 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 282 LAGQQVWDASkQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREES 361
Cdd:COG4913 278 RAALRLWFAQ-RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 362 RDRMVSQLEAQI------------------SELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRD 423
Cdd:COG4913 357 RERRRARLEALLaalglplpasaeefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 424 NLNfekQKYLKFLDQLSQKMKLD--------------------QMAAE-----LGFDM-----RLDVVLARTEQL---VR 470
Cdd:COG4913 437 NIP---ARLLALRDALAEALGLDeaelpfvgelievrpeeerwRGAIErvlggFALTLlvppeHYAAALRWVNRLhlrGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 471 LESNAVIENKTIAHNLQRKLKTQKERLESKE------LHMSLLRQK-------IAQLEEEKQART--------------- 522
Cdd:COG4913 514 LVYERVRTGLPDPERPRLDPDSLAGKLDFKPhpfrawLEAELGRRFdyvcvdsPEELRRHPRAITragqvkgngtrhekd 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 523 --------------------ALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELkAKLADTNELKIKTLEQTKAIED 582
Cdd:COG4913 594 drrrirsryvlgfdnraklaALEAELAELEEELAEAEERLEALEAELDALQERREAL-QRLAEYSWDEIDVASAEREIAE 672
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 583 LNKSRDQLekmkEKAEKKLMSVKSELDttehEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLAD 652
Cdd:COG4913 673 LEAELERL----DASSDDLAALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-310 |
1.17e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 27 EVPVTREQLNHYRNVAQNARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQ 106
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 107 ELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKnCRKHEEFLTQLRDCLDPDERND 186
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA-TERRLEDLEEQIEELSEDIESL 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 187 KASDEDLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLlsavea 266
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL------ 931
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 38570058 267 kEALEREVKIFQERLLAGQQV-WDASKQEVSLLKKSSSELEKSLK 310
Cdd:TIGR02168 932 -EGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLK 975
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
87-590 |
1.36e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 87 YKENNARKSSLLTSLRD-RVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVsKNC 165
Cdd:COG4717 29 YGPNEAGKSTLLAFIRAmLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL-EEL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 166 RKHEEFLTQLRDCLDpderndkasdedLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKK 245
Cdd:COG4717 108 EAELEELREELEKLE------------KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 246 AASCTEEKEKLNQDLLSAVEAkeaLEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFS 325
Cdd:COG4717 176 QEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 326 FREKIAALLRGRLSMTGSTEDTILEkiremdsreesrdrMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQ 405
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAG--------------VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 406 GQLTHLEAElvsggvLRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLvrLESNAVIENKTIAHN 485
Cdd:COG4717 319 EELEELLAA------LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL--LAEAGVEDEEELRAA 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 486 LQrklktQKERLESKELHMSLLRQKIAQLEEEkqartalvVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLAD 565
Cdd:COG4717 391 LE-----QAEEYQELKEELEELEEQLEELLGE--------LEELLEALDEEELEEELEELEEELEELEEELEELREELAE 457
|
490 500
....*....|....*....|....*
gi 38570058 566 TnELKIKTLEQTKAIEDLNKSRDQL 590
Cdd:COG4717 458 L-EAELEQLEEDGELAELLQELEEL 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
47-650 |
2.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 47 SELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALstskiRTEITA 126
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL-----RAELEE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 127 HAaiKENQELKKKVVELNEKLQKCSkeneenkkqvskncRKHEEFLTQLRDCLDPDERndkasdedLILKLRDLRKENEF 206
Cdd:TIGR02169 376 VD--KEFAETRDELKDYREKLEKLK--------------REINELKRELDRLQEELQR--------LSEELADLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 207 VKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERllagqq 286
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER------ 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 287 vwdaskqevsllKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLR----GRL-SMTGSTEDTILEKIREMDSREES 361
Cdd:TIGR02169 506 ------------VRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagNRLnNVVVEDDAVAKEAIELLKRRKAG 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 362 RDRMVSQLEAQISELVEQLGKESGFHQKAL------QRAQKA-----------ENMLET--LQGQ--LTHLEAELVS-GG 419
Cdd:TIGR02169 574 RATFLPLNKMRDERRDLSILSEDGVIGFAVdlvefdPKYEPAfkyvfgdtlvvEDIEAArrLMGKyrMVTLEGELFEkSG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 420 VLRDNLNFEKQKYlkfLDQLSQKMKLDQMAAELGfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLES 499
Cdd:TIGR02169 654 AMTGGSRAPRGGI---LFSRSEPAELQRLRERLE---GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 500 KELHMSLLRQKIAQLEEE----KQARTALVVERDNAHLTIRNLQKKVERLQKELNTC--RDLHTELKAKLADTNELKIKT 573
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDlsslEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEV 807
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38570058 574 LEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERarnmIEVVTSEMKTLKKSLEEAEKREKQL 650
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE----IENLNGKKEELEEELEELEAALRDL 880
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
260-568 |
6.73e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 260 LLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALlrgrls 339
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL------ 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 340 mtgstEDTILEKIREMD---SREESRDRMVSQLEAQISELVEQLGKEsgFHQKALQRAQKAENMLETLQGQLTHLEAELV 416
Cdd:TIGR02169 750 -----EQEIENVKSELKeleARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 417 SggvlrdnLNFEKQkylkFLDQLSQKMKldqmaaelgfdmrldvvlartEQLVRLESNAVIENKTIaHNLQRKLKTQKER 496
Cdd:TIGR02169 823 R-------LTLEKE----YLEKEIQELQ---------------------EQRIDLKEQIKSIEKEI-ENLNGKKEELEEE 869
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38570058 497 LESKELHMSLLRQKIAQLEEEkqartalvveRDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNE 568
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKE----------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
55-590 |
8.48e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 55 KFECAQSELQDLRSKMLSKEVSCQELKAEMESYKEnnarKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQ 134
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 135 ELKKKVVELNE---------KLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDpdERNDKASdedlilKLRDLRKENE 205
Cdd:PRK03918 277 ELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK--ELEEKEE------RLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 206 FVKGQIVILEETINVHEMeakasretIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALEREVKIFQERLlagq 285
Cdd:PRK03918 349 ELEKRLEELEERHELYEE--------AKAKKEELERLKKRLTG--LTPEKLEKELEELEKAKEEIEEEISKITARI---- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 286 qvwDASKQEVSLLKKSSSELEKslkASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSR------- 358
Cdd:PRK03918 415 ---GELKKEIKELKKAIEELKK---AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKElrelekv 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 359 --EESRDRMVSQLEAQISELVEQLGKESgfHQKALQRAQKAENMLE---TLQGQLTHLEAELVSGgvlrDNLNFEKQKYL 433
Cdd:PRK03918 489 lkKESELIKLKELAEQLKELEEKLKKYN--LEELEKKAEEYEKLKEkliKLKGEIKSLKKELEKL----EELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 434 KFLDQLSQKMK-LDQMAAELGFDMRLDVvlarTEQLVRLES--NAVIENKTIAHNLQRKLKTQK---ERLESKELHMSLL 507
Cdd:PRK03918 563 KKLDELEEELAeLLKELEELGFESVEEL----EERLKELEPfyNEYLELKDAEKELEREEKELKkleEELDKAFEELAET 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 508 RQKIAQLEEEKQARTALVVERDNAHLT--IRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKIKTLEQTKAIEDLNK 585
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSEEEYEELReeYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
....*
gi 38570058 586 SRDQL 590
Cdd:PRK03918 719 ALERV 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
243-452 |
1.23e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 243 QKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQ 322
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 323 YFSFREKIAALLRGRLSMTGSTEDTIL---EKIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAEN 399
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 38570058 400 MLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYLKFLDQLSQKMK-LDQMAAEL 452
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEeLEALIARL 232
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
241-590 |
1.34e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 241 REqKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFqERLLAGQ-QVWDAS--KQEVSLLKKSSSELEKSLKASQDAVT 317
Cdd:COG3096 783 RE-KRLEELRAERDELAEQYAKASFDVQKLQRLHQAF-SQFVGGHlAVAFAPdpEAELAALRQRRSELERELAQHRAQEQ 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 318 TSQSQYFSFREKIaALLRGRLSMTGSTEDTILEkiremDSREESRDRMVSQLEAQIselveqlgkesgFHQKALQRAQKA 397
Cdd:COG3096 861 QLRQQLDQLKEQL-QLLNKLLPQANLLADETLA-----DRLEELREELDAAQEAQA------------FIQQHGKALAQL 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 398 ENMLETLQgqlthleaelvsggvlRDNLNFE--KQKYLKFLDQLSQkmkLDQMAAELGFdmrldvVLARTEQLVRLESNA 475
Cdd:COG3096 923 EPLVAVLQ----------------SDPEQFEqlQADYLQAKEQQRR---LKQQIFALSE------VVQRRPHFSYEDAVG 977
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 476 -VIENKTIAHNLQRKL-KTQKERLESKElhmsLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQKKVE---------- 543
Cdd:COG3096 978 lLGENSDLNEKLRARLeQAEEARREARE----QLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEelgvqadaea 1053
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 38570058 544 ---------RLQKELNTCRDLHTELKAKLAdTNELKIKTLEQ--TKAIEDLNKSRDQL 590
Cdd:COG3096 1054 eerarirrdELHEELSQNRSRRSQLEKQLT-RCEAEMDSLQKrlRKAERDYKQEREQV 1110
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
103-656 |
1.53e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 103 DRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEE-NKKQVSKNCRKHEEFLTQLRDCLDP 181
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaEEERNNEEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 182 DERNDKASDEDLILKLRDLRKENEFVKGqivilEETINVHEMEAKASREtimRLASEVNREQKKAASCTEEKEKLNQDLL 261
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKA-----EEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 262 SAVEAKEALER----EVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAvTTSQSQYFSFREKIAALLRGR 337
Cdd:PTZ00121 1343 KAAEAAKAEAEaaadEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA-EEDKKKADELKKAAAAKKKAD 1421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 338 LSMTGSTEDTILEKIREmdSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAEnmlETLQGQLTHLEAELVS 417
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE---EAKKADEAKKKAEEAK 1496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 418 GGVLRDNLNFEKQKYLKFLDQLSQKMKLDQMaaelgfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQR---KLKTQK 494
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEA--------KKAEEAKKADEAKKAEEKKKADELKKAEELKKaeeKKKAEE 1568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 495 ERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQK------KVERLQKElNTCRDLHTELKAKLADtne 568
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKaeeakiKAEELKKA-EEEKKKVEQLKKKEAE--- 1644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 569 lKIKTLEQTKAIEDLNKSRDQLEKMKEKAEKKlmsvKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREK 648
Cdd:PTZ00121 1645 -EKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
....*...
gi 38570058 649 QLADFREV 656
Cdd:PTZ00121 1720 ELKKAEEE 1727
|
|
| SH3_and_anchor |
TIGR04211 |
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved ... |
54-164 |
2.44e-03 |
|
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.
Pssm-ID: 275056 [Multi-domain] Cd Length: 198 Bit Score: 39.61 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 54 VKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAAlstskirteitAHAAIKEN 133
Cdd:TIGR04211 66 ERLPELQQELAELQEELAELQEQLAELRQENQELKQQLSTLEAELEELQKELERIKQISAN-----------AIELDEEN 134
|
90 100 110
....*....|....*....|....*....|.
gi 38570058 134 QELKKKVVELNEKLQKCSKENEENKKQVSKN 164
Cdd:TIGR04211 135 RELREELAELKQENEALEAENERLQENEQRR 165
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
353-661 |
2.69e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 353 REMDSREESRDRmvsqLEAQISELVEQLGKESGFHQKALQ----RAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFE 428
Cdd:TIGR02169 177 EELEEVEENIER----LDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 429 KQKYLKFLDQLSQKMKldqmAAElgfdMRLDVVLARTEQLVRLESNAVienktiahnlqrklktqKERLESKELHMSLLR 508
Cdd:TIGR02169 253 LEKLTEEISELEKRLE----EIE----QLLEELNKKIKDLGEEEQLRV-----------------KEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 509 QKIAQLEEEKQ----ARTALVVERDNAHLTIRNLQKKVERLQKEL-----------NTCRDLHTELKAKLADTNELKIKT 573
Cdd:TIGR02169 308 RSIAEKERELEdaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRdklteeyaelkEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 574 LEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDttehEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLADF 653
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELA----DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
....*...
gi 38570058 654 REVVSQML 661
Cdd:TIGR02169 464 LSKYEQEL 471
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
79-274 |
4.62e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 79 ELKAEMESYKennARKSSLLTSLRDRVQELEEESAALStsKIRTEItahAAIKENQELKKKVVELNEKLQ---KCSKENE 155
Cdd:PHA02562 224 ELVEEAKTIK---AEIEELTDELLNLVMDIEDPSAALN--KLNTAA---AKIKSKIEQFQKVIKMYEKGGvcpTCTQQIS 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 156 ENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDE--DLILKLRDLRKENEFVKGQIVILEEtinvhemEAKASRETIM 233
Cdd:PHA02562 296 EGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEfnEQSKKLLELKNKISTNKQSLITLVD-------KAKKVKAAIE 368
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 38570058 234 RLASEVnreqkkaASCTEEKEKLNQDLLSAVEAKEALEREV 274
Cdd:PHA02562 369 ELQAEF-------VDNAEELAKLQDELDKIVKTKSELVKEK 402
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
55-531 |
4.76e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 55 KFECAQSELQDLRSKMLSKEVSCQELKAEMESyKENNARKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQ 134
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA-AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 135 ELKKKVVELNEKLQKCSKENEENKKQVSKncRKHEEFLTQLRDCLDPDERNDKASD----EDLILKLRDLRKENEFVKGQ 210
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAKKKAEEakkaEEAKKKAEEAKKADEAKKKA 1479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 211 ivilEETINVHEMEAKAsrETIMRLASEVNR---EQKKAASCTEEKEKLNQDLLSAVE----AKEALEREVKIFQERLLA 283
Cdd:PTZ00121 1480 ----EEAKKADEAKKKA--EEAKKKADEAKKaaeAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 284 GQQVWDAskQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAAllrgrlsmtgsTEDTILEKIREMDSREESRD 363
Cdd:PTZ00121 1554 AEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL-----------YEEEKKMKAEEAKKAEEAKI 1620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 364 RMVS-QLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTH-LEAELVSGGVLRDNLNFEKQKYLKFLDQLSQ 441
Cdd:PTZ00121 1621 KAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 442 KMKLDQMAAELGFDMRldvvlaRTEQLVRLESnaviENKTIAHNLQRKLKTQKERLESKELHMSlLRQKIAQLEEEKQAR 521
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKK------KAEELKKAEE----ENKIKAEEAKKEAEEDKKKAEEAKKDEE-EKKKIAHLKKEEEKK 1769
|
490
....*....|
gi 38570058 522 TALVVERDNA 531
Cdd:PTZ00121 1770 AEEIRKEKEA 1779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
216-415 |
7.34e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 216 ETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEv 295
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 296 slLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRgRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISE 375
Cdd:COG4942 99 --LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR-RLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 38570058 376 LVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAEL 415
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
493-705 |
9.96e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.11 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 493 QKERLESKELHMSLLRQKIAQLEEEKQARTALVVERdnahltiRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKIK 572
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQR-------RELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38570058 573 TLEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLAD 652
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSK 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 38570058 653 FREVVSQMLGLNVTSLALPDYEIIKCLERLVHSHQHHFVTCACLKDVTTGQER 705
Cdd:pfam07888 193 EFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQER 245
|
|
| |
