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Conserved domains on  [gi|19263338|ref|NP_077794|]
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collagen alpha-1(XXVI) chain isoform 1 precursor [Mus musculus]

Protein Classification

EMI domain-containing protein( domain architecture ID 10540334)

EMI domain-containing protein similar to multiple epidermal growth factor-like domains protein 10, a membrane receptor involved in phagocytosis by macrophages and astrocytes of apoptotic cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 53-123 6.37e-21

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


:

Pssm-ID: 462204  Cd Length: 69  Bit Score: 85.93  E-value: 6.37e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19263338    53 RHWCHHtvtRTVSCQVQNGSETVVQRVYQ----SCRWPGPCAnlvSYRTLIRPTYRVSYRTVTALEWRCCPGFTG 123
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 53-123 6.37e-21

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 85.93  E-value: 6.37e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19263338    53 RHWCHHtvtRTVSCQVQNGSETVVQRVYQ----SCRWPGPCAnlvSYRTLIRPTYRVSYRTVTALEWRCCPGFTG 123
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 53-123 6.37e-21

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 85.93  E-value: 6.37e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19263338    53 RHWCHHtvtRTVSCQVQNGSETVVQRVYQ----SCRWPGPCAnlvSYRTLIRPTYRVSYRTVTALEWRCCPGFTG 123
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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