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Conserved domains on  [gi|10863957|ref|NP_066978|]
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CD209 antigen isoform 1 [Homo sapiens]

Protein Classification

C-type lectin domain-containing protein( domain architecture ID 10132480)

C-type lectin (CTL)/C-type lectin-like (CTLD) domain-containing protein may bind carbohydrate in a calcium-dependent manner

CATH:  3.10.100.10
Gene Ontology:  GO:0030246
PubMed:  16336259|10508765
SCOP:  4002453

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CLECT_DC-SIGN_like cd03590
C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific ...
 256-379 1.93e-61

C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR); CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on pathogens including parasites, bacteria, and viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing viral infection of T cells. DC-SIGN and DC-SIGNR are homotetrameric, and contain four CTLDs stabilized by a coiled coil of alpha helices. The hepatic ASGP-R is an endocytic recycling receptor which binds and internalizes desialylated glycoproteins having a terminal galactose or N-acetylgalactosamine residues on their N-linked carbohydrate chains, via the clathrin-coated pit mediated endocytic pathway, and delivers them to lysosomes for degradation. It has been proposed that glycoproteins bearing terminal Sia (sialic acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are endogenous ligands for ASGP-R and that ASGP-R participates in regulating the relative concentration of serum glycoproteins bearing alpha 2,6-linked Sia. The human ASGP-R is a hetero-oligomer composed of two subunits, both of which are found within this group. Langerin is expressed in a subset of dendritic leukocytes, the Langerhans cells (LC). Langerin induces the formation of Birbeck Granules (BGs) and associates with these BGs following internalization. Langerin binds, in a calcium-dependent manner, to glyco-conjugates containing mannose and related sugars mediating their uptake and degradation. Langerin molecules oligomerize as trimers with three CTLDs held together by a coiled-coil of alpha helices.


:

Pssm-ID: 153060 [Multi-domain]  Cd Length: 126  Bit Score: 194.45  E-value: 1.93e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQlQSSRSNRFTWMGLSDLNQEGTWQWVDGSPL 335
Cdd:cd03590   1 CPTNWKSFQSSCYFFSTEKKSWEESRQFCEDMGAHLVIINSQEEQEFIS-KILSGNRSYWIGLSDEETEGEWKWVDGTPL 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 10863957 336 LPSfKQYWNRGEPNNVG--EEDCAEFSGN--GWNDDKCNLAKFWICKK 379
Cdd:cd03590  80 NSS-KTFWHPGEPNNWGggGEDCAELVYDsgGWNDVPCNLEYRWICEK 126
GumC super family cl34566
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
53-225 1.31e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3206:

Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 53.87  E-value: 1.31e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  53 LAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELpeKSKLQEIYQELTRLKA 132
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL--SARYTPNHPDVIALRA 298

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 133 AVGELpEKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTRLKAAVGELPEKSKQqeiYQELTRlkaavgelpEKSKQ 212
Cdd:COG3206 299 QIAAL-RAQLQQEAQRILASLEAELEAL--QAREASLQAQLAQLEARLAELPELEAE---LRRLER---------EVEVA 363

                       170
                ....*....|....
gi 10863957 213 QEIYQE-LTRLKAA 225
Cdd:COG3206 364 RELYESlLQRLEEA 377
 
Name Accession Description Interval E-value
CLECT_DC-SIGN_like cd03590
C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific ...
 256-379 1.93e-61

C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR); CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on pathogens including parasites, bacteria, and viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing viral infection of T cells. DC-SIGN and DC-SIGNR are homotetrameric, and contain four CTLDs stabilized by a coiled coil of alpha helices. The hepatic ASGP-R is an endocytic recycling receptor which binds and internalizes desialylated glycoproteins having a terminal galactose or N-acetylgalactosamine residues on their N-linked carbohydrate chains, via the clathrin-coated pit mediated endocytic pathway, and delivers them to lysosomes for degradation. It has been proposed that glycoproteins bearing terminal Sia (sialic acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are endogenous ligands for ASGP-R and that ASGP-R participates in regulating the relative concentration of serum glycoproteins bearing alpha 2,6-linked Sia. The human ASGP-R is a hetero-oligomer composed of two subunits, both of which are found within this group. Langerin is expressed in a subset of dendritic leukocytes, the Langerhans cells (LC). Langerin induces the formation of Birbeck Granules (BGs) and associates with these BGs following internalization. Langerin binds, in a calcium-dependent manner, to glyco-conjugates containing mannose and related sugars mediating their uptake and degradation. Langerin molecules oligomerize as trimers with three CTLDs held together by a coiled-coil of alpha helices.


Pssm-ID: 153060 [Multi-domain]  Cd Length: 126  Bit Score: 194.45  E-value: 1.93e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQlQSSRSNRFTWMGLSDLNQEGTWQWVDGSPL 335
Cdd:cd03590   1 CPTNWKSFQSSCYFFSTEKKSWEESRQFCEDMGAHLVIINSQEEQEFIS-KILSGNRSYWIGLSDEETEGEWKWVDGTPL 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 10863957 336 LPSfKQYWNRGEPNNVG--EEDCAEFSGN--GWNDDKCNLAKFWICKK 379
Cdd:cd03590  80 NSS-KTFWHPGEPNNWGggGEDCAELVYDsgGWNDVPCNLEYRWICEK 126
CLECT smart00034
C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function ...
 256-378 8.87e-38

C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function as calcium-dependent carbohydrate binding modules.


Pssm-ID: 214480 [Multi-domain]  Cd Length: 124  Bit Score: 132.72  E-value: 8.87e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ--LQSSRSNRFTWMGLSDLNQEGTWQWVDGS 333
Cdd:smart00034   1 CPSGWISYGGKCYKFSTEKKTWEDAQAFCQSLGGHLASIHSEAENDFVAslLKNSGSSDYYWIGLSDPDSNGSWQWSDGS 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 10863957    334 PLLPSFkqYWNRGEPNNvGEEDCAEFSGNG--WNDDKCNLAKFWICK 378
Cdd:smart00034  81 GPVSYS--NWAPGEPNN-SSGDCVVLSTSGgkWNDVSCTSKLPFVCE 124
Lectin_C pfam00059
Lectin C-type domain; This family includes both long and short form C-type
 274-379 5.81e-27

Lectin C-type domain; This family includes both long and short form C-type


Pssm-ID: 459655 [Multi-domain]  Cd Length: 105  Bit Score: 103.33  E-value: 5.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   274 QRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFkqyWNRGEPNNVGE 353
Cdd:pfam00059   1 SKTWDEAREACRKLGGHLVSINSAEELDFLSSTLKKSNKYFWIGLTDRKNEGTWKWVDGSPVNYTN---WAPEPNNNGEN 77

                          90       100
                  ....*....|....*....|....*...
gi 10863957   354 EDCAE--FSGNGWNDDKCNLAKFWICKK 379
Cdd:pfam00059  78 EDCVElsSSSGKWNDENCNSKNPFVCEK 105
PHA02642 PHA02642
C-type lectin-like protein; Provisional
 256-380 8.75e-12

C-type lectin-like protein; Provisional


Pssm-ID: 165024 [Multi-domain]  Cd Length: 216  Bit Score: 64.37  E-value: 8.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRftWMGLSDLNQEGTWQWVDGSPL 335
Cdd:PHA02642  88 CPKGWIGFGYKCFYFSEDSKNWTFGNTFCTSLGATLVKVETEEELNFLKRYKDSSDH--WIGLNRESSNHPWKWADNSNY 165

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 10863957  336 LPSFKQywnrgepnnVGEEDCAEFSGNGWNDDKCNLAKFWICKKS 380
Cdd:PHA02642 166 NASFVI---------TGTGECAYLNDIRISSSRVYANRKWICSKT 201
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 237-392 1.74e-11

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 66.26  E-value: 1.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    237 EIYQELTQLKAAVERLCHP-CPWEWTFFQGN--CYFMSNSQRNWHDSITACKE-VGAQLVVIKSAEEQNFLQLQSSRS-N 311
Cdd:TIGR00864  298 DAAWKITAHGEEPAKASHPhCPKDGEIFEENghCFQIVPEEAAWLDAQEQCLArAGAALAIVDNDALQNFLARKVTHSlD 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    312 RFTWMGLSDLN--QEGTWQWVDGSPLLPSfkQYWNRGEPNNVGEEDCAEFSGNGW-NDDKCNLAKFWICKKSAASCSRDE 388
Cdd:TIGR00864  378 RGVWIGFSDVNgaEKGPAHQGEAFEAEEC--EEGLAGEPHPARAEHCVRLDPRGQcNSDLCNAPHAYVCELNPGGPVPDA 455


                   ....
gi 10863957    389 EQFL 392
Cdd:TIGR00864  456 ENFA 459
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
53-225 1.31e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 53.87  E-value: 1.31e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  53 LAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELpeKSKLQEIYQELTRLKA 132
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL--SARYTPNHPDVIALRA 298

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 133 AVGELpEKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTRLKAAVGELPEKSKQqeiYQELTRlkaavgelpEKSKQ 212
Cdd:COG3206 299 QIAAL-RAQLQQEAQRILASLEAELEAL--QAREASLQAQLAQLEARLAELPELEAE---LRRLER---------EVEVA 363

                       170
                ....*....|....
gi 10863957 213 QEIYQE-LTRLKAA 225
Cdd:COG3206 364 RELYESlLQRLEEA 377
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
59-252 4.23e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 4.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   59 QVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKskLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKA-AVGEL 137
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEER--IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEeYLDEL 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  138 PEKSKLQEIY-QELTWLKAAVGELPEK-SKMQEIYQELTRLKAAVGELPEKskqQEIYQELTRLKAAVGELPEKSKQ--- 212
Cdd:PRK03918 310 REIEKRLSRLeEEINGIEERIKELEEKeERLEELKKKLKELEKRLEELEER---HELYEEAKAKKEELERLKKRLTGltp 386

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 10863957  213 QEIYQELTRLKAAVGELPEK-----SKQQEIYQELTQLKAAVERL 252
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEiskitARIGELKKEIKELKKAIEEL 431
 
Name Accession Description Interval E-value
CLECT_DC-SIGN_like cd03590
C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific ...
 256-379 1.93e-61

C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR); CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on pathogens including parasites, bacteria, and viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing viral infection of T cells. DC-SIGN and DC-SIGNR are homotetrameric, and contain four CTLDs stabilized by a coiled coil of alpha helices. The hepatic ASGP-R is an endocytic recycling receptor which binds and internalizes desialylated glycoproteins having a terminal galactose or N-acetylgalactosamine residues on their N-linked carbohydrate chains, via the clathrin-coated pit mediated endocytic pathway, and delivers them to lysosomes for degradation. It has been proposed that glycoproteins bearing terminal Sia (sialic acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are endogenous ligands for ASGP-R and that ASGP-R participates in regulating the relative concentration of serum glycoproteins bearing alpha 2,6-linked Sia. The human ASGP-R is a hetero-oligomer composed of two subunits, both of which are found within this group. Langerin is expressed in a subset of dendritic leukocytes, the Langerhans cells (LC). Langerin induces the formation of Birbeck Granules (BGs) and associates with these BGs following internalization. Langerin binds, in a calcium-dependent manner, to glyco-conjugates containing mannose and related sugars mediating their uptake and degradation. Langerin molecules oligomerize as trimers with three CTLDs held together by a coiled-coil of alpha helices.


Pssm-ID: 153060 [Multi-domain]  Cd Length: 126  Bit Score: 194.45  E-value: 1.93e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQlQSSRSNRFTWMGLSDLNQEGTWQWVDGSPL 335
Cdd:cd03590   1 CPTNWKSFQSSCYFFSTEKKSWEESRQFCEDMGAHLVIINSQEEQEFIS-KILSGNRSYWIGLSDEETEGEWKWVDGTPL 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 10863957 336 LPSfKQYWNRGEPNNVG--EEDCAEFSGN--GWNDDKCNLAKFWICKK 379
Cdd:cd03590  80 NSS-KTFWHPGEPNNWGggGEDCAELVYDsgGWNDVPCNLEYRWICEK 126
CLECT smart00034
C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function ...
 256-378 8.87e-38

C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function as calcium-dependent carbohydrate binding modules.


Pssm-ID: 214480 [Multi-domain]  Cd Length: 124  Bit Score: 132.72  E-value: 8.87e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ--LQSSRSNRFTWMGLSDLNQEGTWQWVDGS 333
Cdd:smart00034   1 CPSGWISYGGKCYKFSTEKKTWEDAQAFCQSLGGHLASIHSEAENDFVAslLKNSGSSDYYWIGLSDPDSNGSWQWSDGS 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 10863957    334 PLLPSFkqYWNRGEPNNvGEEDCAEFSGNG--WNDDKCNLAKFWICK 378
Cdd:smart00034  81 GPVSYS--NWAPGEPNN-SSGDCVVLSTSGgkWNDVSCTSKLPFVCE 124
CLECT cd00037
C-type lectin (CTL)/C-type lectin-like (CTLD) domain; CLECT: C-type lectin (CTL)/C-type ...
 266-379 3.03e-36

C-type lectin (CTL)/C-type lectin-like (CTLD) domain; CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. Several CTLDs bind to protein ligands, and only some of these binding interactions are Ca2+-dependent; including the CTLDs of Coagulation Factors IX/X (IX/X) and Von Willebrand Factor (VWF) binding proteins, and natural killer cell receptors. C-type lectins, such as lithostathine, and some type II antifreeze glycoproteins function in a Ca2+-independent manner to bind inorganic surfaces. Many proteins in this group contain a single CTLD; these CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers, from which ligand-binding sites project in different orientations. Various vertebrate type 1 transmembrane proteins including macrophage mannose receptor, endo180, phospholipase A2 receptor, and dendritic and epithelial cell receptor (DEC205) have extracellular domains containing 8 or more CTLDs; these CTLDs remain in the parent model. In some members (IX/X and VWF binding proteins), a loop extends to the adjoining domain to form a loop-swapped dimer. A similar conformation is seen in the macrophage mannose receptor CRD4's putative non-sugar bound form of the domain in the acid environment of the endosome. Lineage specific expansions of CTLDs have occurred in several animal lineages including Drosophila melanogaster and Caenorhabditis elegans; these CTLDs also remain in the parent model.


Pssm-ID: 153057 [Multi-domain]  Cd Length: 116  Bit Score: 128.51  E-value: 3.03e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 266 NCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ-LQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFkqYWN 344
Cdd:cd00037   1 SCYKFSTEKLTWEEAQEYCRSLGGHLASIHSEEENDFLAsLLKKSSSSDVWIGLNDLSSEGTWKWSDGSPLVDYT--NWA 78

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 10863957 345 RGEPNNVGEEDCAEFSGN---GWNDDKCNLAKFWICKK 379
Cdd:cd00037  79 PGEPNPGGSEDCVVLSSSsdgKWNDVSCSSKLPFICEK 116
CLECT_NK_receptors_like cd03593
C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); ...
 256-379 5.02e-30

C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis upon recognition of markers of healthy self cells. Most Lys49 receptors are inhibitory; some are stimulatory. OCIL inhibits NK cell function via binding to the receptor NKRP1D. Murine OCIL in addition to inhibiting NK cell function inhibits osteoclast differentiation. MAFA clusters with the type I Fc epsilon receptor (FcepsilonRI) and inhibits the mast cells secretory response to FcepsilonRI stimulus. CD72 is a negative regulator of B cell receptor signaling. NKG2D is an activating receptor for stress-induced antigens; human NKG2D ligands include the stress induced MHC-I homologs, MICA, MICB, and ULBP family of glycoproteins Several NKRs have a carbohydrate-binding capacity which is not mediated through calcium ions (e.g. OCIL binds a range of high molecular weight sulfated glycosaminoglycans including dextran sulfate, fucoidan, and gamma-carrageenan sugars). Dectin-1 binds fungal beta-glucans and in involved in the innate immune responses to fungal pathogens. MAFA binds saccharides having terminal alpha-D mannose residues in a calcium-dependent manner. LOX-1 is the major receptor for OxLDL in endothelial cells and thought to play a role in the pathology of atherosclerosis. Some NKRs exist as homodimers (e.g.Lys49, NKG2D, CD69, LOX-1) and some as heterodimers (e.g. CD94/NKG2A). Dectin-1 can function as a monomer in vitro.


Pssm-ID: 153063  Cd Length: 116  Bit Score: 112.04  E-value: 5.02e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRftWMGLSDLNQEGTWQWVDGSPL 335
Cdd:cd03593   1 CPKDWICYGNKCYYFSMEKKTWNESKEACSSKNSSLLKIDDEEELEFLQSQIGSSSY--WIGLSREKSEKPWKWIDGSPL 78

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 10863957 336 LPSFKqywnrgEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKK 379
Cdd:cd03593  79 NNLFN------IRGSTKSGNCAYLSSTGIYSEDCSTKKRWICEK 116
CLECT_CEL-1_like cd03589
C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and ...
 256-378 1.35e-27

C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina; CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.


Pssm-ID: 153059  Cd Length: 137  Bit Score: 106.29  E-value: 1.35e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVG-----AQLVVIKSAEEQNFL--QLQSSRSNRFT---WMGLSDLNQEG 325
Cdd:cd03589   1 CPTFWTAFGGYCYRFFGDRLTWEEAELRCRSFSipgliAHLVSIHSQEENDFVydLFESSRGPDTPyglWIGLHDRTSEG 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 10863957 326 TWQWVDGSPLlpSFkQYWNRGEPNN-VGEEDCAEFSGNG-----WNDDKCNLAKFWICK 378
Cdd:cd03589  81 PFEWTDGSPV--DF-TKWAGGQPDNyGGNEDCVQMWRRGdagqsWNDMPCDAVFPYICK 136
Lectin_C pfam00059
Lectin C-type domain; This family includes both long and short form C-type
 274-379 5.81e-27

Lectin C-type domain; This family includes both long and short form C-type


Pssm-ID: 459655 [Multi-domain]  Cd Length: 105  Bit Score: 103.33  E-value: 5.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   274 QRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFkqyWNRGEPNNVGE 353
Cdd:pfam00059   1 SKTWDEAREACRKLGGHLVSINSAEELDFLSSTLKKSNKYFWIGLTDRKNEGTWKWVDGSPVNYTN---WAPEPNNNGEN 77

                          90       100
                  ....*....|....*....|....*...
gi 10863957   354 EDCAE--FSGNGWNDDKCNLAKFWICKK 379
Cdd:pfam00059  78 EDCVElsSSSGKWNDENCNSKNPFVCEK 105
CLECT_collectin_like cd03591
C-type lectin-like domain (CTLD) of the type found in human collectins including lung ...
 268-377 2.00e-22

C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1); CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, are components of pulmonary surfactant which play a role in surfactant homeostasis. Pulmonary surfactant is a phospholipid-protein complex which reduces the surface tension within the lungs. SP-A binds the major surfactant lipid: dipalmitoylphosphatidylcholine (DPPC). SP-D binds two minor components of surfactant that contain sugar moieties: glucosylceramide and phosphatidylinositol (PI). MBP and SP-A, -D monomers are homotrimers with an N-terminal collagen region and three CTLDs. Multiple homotrimeric units associate to form supramolecular complexes. MBL deficiency results in an increased susceptibility to a large number of different infections and to inflammatory disease, such as rheumatoid arthritis.


Pssm-ID: 153061 [Multi-domain]  Cd Length: 114  Bit Score: 91.20  E-value: 2.00e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 268 YFMSNSQR-NWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLlpSFKQyWNRG 346
Cdd:cd03591   3 IFVTNGEEkNFDDAQKLCSEAGGTLAMPRNAAENAAIASYVKKGNTYAFIGITDLETEGQFVYLDGGPL--TYTN-WKPG 79

                        90       100       110
                ....*....|....*....|....*....|...
gi 10863957 347 EPNNVG-EEDCAE-FSGNGWNDDKCNLAKFWIC 377
Cdd:cd03591  80 EPNNAGgGEDCVEmYTSGKWNDVACNLTRLFVC 112
CLECT_selectins_like cd03592
C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P ...
 268-377 1.99e-19

C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels); CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel expression is induced. The initial step in leukocyte migration involves interactions of selectins with fucosylated, sialylated, and sulfated carbohydrate moieties on target ligands displayed on glycoprotein scaffolds on endothelial cells and leucocytes. A major ligand of P- E- and L-sels is PSGL-1 (P-sel glycoprotein ligand). Interactions of E- and P- sels with tumor cells may promote extravasation of cancer cells. Regulation of L-sel and P-sel function includes proteolytic shedding of the most extracellular portion (containing the CTLD) from the cell surface. Increased levels of the soluble form of P-sel in the plasma have been found in a number of diseases including coronary disease and diabetes. E- and P- sel also play roles in the development of synovial inflammation in inflammatory arthritis. Platelet P-sel, but not endothelial P-sel, plays a role in the inflammatory response and neointimal formation after arterial injury. Selectins may also function as signal-transducing receptors.


Pssm-ID: 153062  Cd Length: 115  Bit Score: 83.19  E-value: 1.99e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 268 YFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFL-QLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLlpSFKQyWNRG 346
Cdd:cd03592   3 YHYSTEKMTFNEAVKYCKSRGTDLVAIQNAEENALLnGFALKYNLGYYWIDGNDINNEGTWVDTDKKEL--EYKN-WAPG 79

                        90       100       110
                ....*....|....*....|....*....|....*
gi 10863957 347 EPNNVGEEDCAE----FSGNgWNDDKCNLAKFWIC 377
Cdd:cd03592  80 EPNNGRNENCLEiyikDNGK-WNDEPCSKKKSAIC 113
CLECT_CSPGs cd03588
C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core ...
 256-379 1.42e-18

C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins; CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classification system to be a variety of CTLD, but are omitted from this hierarchical classification based on insignificant sequence similarity.


Pssm-ID: 153058  Cd Length: 124  Bit Score: 81.08  E-value: 1.42e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLqlqSSRSNRFTWMGLSDLNQEGTWQWVDGSPL 335
Cdd:cd03588   1 CEEGWDKFQGHCYRHFPDRETWEDAERRCREQQGHLSSIVTPEEQEFV---NNNAQDYQWIGLNDRTIEGDFRWSDGHPL 77

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 10863957 336 LpsFKQyWNRGEPNN--VGEEDCAEFSGNG---WNDDKCNLAKFWICKK 379
Cdd:cd03588  78 Q--FEN-WRPNQPDNffATGEDCVVMIWHEegeWNDVPCNYHLPFTCKK 123
CLECT_REG-1_like cd03594
C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and ...
 256-378 3.91e-16

C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2); CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates several bacterial strains from the intestinal flora and it has been suggested that it is involved in the control of the intestinal bacterial ecosystem. Rat lithostathine has calcium carbonate crystal inhibitor activity in vitro. REG-IV is unregulated in pancreatic, gastric, hepatocellular, and prostrate adenocarcinomas. REG-IV activates the EGF receptor/Akt/AP-1 signaling pathway in colorectal carcinoma. Ansocalcin, SCA-1 and -2 are found at high concentration in the calcified egg shell layer of goose and ostrich, respectively and tend to form aggregates. Ansocalcin nucleates calcite crystal aggregates in vitro.


Pssm-ID: 153064 [Multi-domain]  Cd Length: 129  Bit Score: 74.33  E-value: 3.91e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEV--GAQLVVIKSAEEQNFLQ---LQSSRSNRFTWMGLSDLNQEGTWQWV 330
Cdd:cd03594   1 CPKGWLPYKGNCYGYFRQPLSWSDAELFCQKYgpGAHLASIHSPAEAAAIAsliSSYQKAYQPVWIGLHDPQQSRGWEWS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 10863957 331 DGSPLLPSfkqYWNRGEPNNVGEEdCAEFSGNG----WNDDKCNLAKFWICK 378
Cdd:cd03594  81 DGSKLDYR---SWDRNPPYARGGY-CAELSRSTgflkWNDANCEERNPFICK 128
CLECT_VCBS cd03603
A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein ...
 276-366 4.27e-15

A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins; CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in different orientations. In some CTLDs a loop extends to the adjoining domain to form a loop-swapped dimer.


Pssm-ID: 153073 [Multi-domain]  Cd Length: 118  Bit Score: 71.30  E-value: 4.27e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 276 NWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNrFTWMGLSDLNQEGTWQWVDGSPLLPSFkqyWNRGEP------- 348
Cdd:cd03603  11 TWEAAQTLAESLGGHLVTINSAEENDWLLSNFGGYG-ASWIGASDAATEGTWKWSDGEESTYTN---WGSGEPhnngggn 86

                        90
                ....*....|....*....
gi 10863957 349 -NNVGEEDCAEFSGnGWND 366
Cdd:cd03603  87 eDYAAINHFPGISG-KWND 104
CLECT_tetranectin_like cd03596
C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived ...
 267-377 3.31e-13

C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF); CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the binding of Plg and AST K1-4 to the extracellular matrix (EMC) of endothelial cells and counteracts the antiproliferative effects of AST K1-4 on these cells. TN also binds the tenth kringle domain of apolipoprotein (a). In addition, TN binds fibrin and complex polysaccharides in a Ca2+ dependent manner. The binding site for complex sulfated polysaccharides is N-terminal to the CTLD. TN is homotrimeric; N-terminal to the CTLD is an alpha helical domain responsible for trimerization of monomeric units. TN may modulate angiogenesis through interactions with angiostatin and coagulation through interaction with fibrin. TN may play a role in myogenesis and in bone development. Mice having a deletion in the TN gene exhibit a kyphotic spine abnormality. TN is a useful prognostic marker of certain cancer types. CLECSF1 is expressed in cartilage tissue, which is primarily intracellular matrix (ECM), and is a candidate for organizing ECM. SCGF is strongly expressed in bone marrow and is a cytokine for primitive hematopoietic progenitor cells.


Pssm-ID: 153066  Cd Length: 129  Bit Score: 66.26  E-value: 3.31e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 267 CYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ---LQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLlpSFKQyW 343
Cdd:cd03596  11 CYLVSEETKHYHEASEDCIARGGTLATPRDSDENDALRdyvKASVPGNWEVWLGINDMVAEGKWVDVNGSPI--SYFN-W 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 10863957 344 NR---GEPNNVGEEDCAEFSG--NG-WNDDKCNLAKFWIC 377
Cdd:cd03596  88 EReitAQPDGGKRENCVALSSsaQGkWFDEDCRREKPYVC 127
PHA02642 PHA02642
C-type lectin-like protein; Provisional
 256-380 8.75e-12

C-type lectin-like protein; Provisional


Pssm-ID: 165024 [Multi-domain]  Cd Length: 216  Bit Score: 64.37  E-value: 8.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRftWMGLSDLNQEGTWQWVDGSPL 335
Cdd:PHA02642  88 CPKGWIGFGYKCFYFSEDSKNWTFGNTFCTSLGATLVKVETEEELNFLKRYKDSSDH--WIGLNRESSNHPWKWADNSNY 165

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 10863957  336 LPSFKQywnrgepnnVGEEDCAEFSGNGWNDDKCNLAKFWICKKS 380
Cdd:PHA02642 166 NASFVI---------TGTGECAYLNDIRISSSRVYANRKWICSKT 201
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 237-392 1.74e-11

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 66.26  E-value: 1.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    237 EIYQELTQLKAAVERLCHP-CPWEWTFFQGN--CYFMSNSQRNWHDSITACKE-VGAQLVVIKSAEEQNFLQLQSSRS-N 311
Cdd:TIGR00864  298 DAAWKITAHGEEPAKASHPhCPKDGEIFEENghCFQIVPEEAAWLDAQEQCLArAGAALAIVDNDALQNFLARKVTHSlD 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957    312 RFTWMGLSDLN--QEGTWQWVDGSPLLPSfkQYWNRGEPNNVGEEDCAEFSGNGW-NDDKCNLAKFWICKKSAASCSRDE 388
Cdd:TIGR00864  378 RGVWIGFSDVNgaEKGPAHQGEAFEAEEC--EEGLAGEPHPARAEHCVRLDPRGQcNSDLCNAPHAYVCELNPGGPVPDA 455


                   ....
gi 10863957    389 EQFL 392
Cdd:TIGR00864  456 ENFA 459
CLECT_1 cd03602
C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains ...
 268-377 1.01e-10

C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins; CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in different orientations. In some CTLDs a loop extends to the adjoining domain to form a loop-swapped dimer.


Pssm-ID: 153072  Cd Length: 108  Bit Score: 58.54  E-value: 1.01e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 268 YFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDlnQEGTWQWVDGSPLLPSfkqYWNRGE 347
Cdd:cd03602   3 FYLVNESKTWSEAQQYCRENYTDLATVQNQEDNALLSNLSRVSNSAAWIGLYR--DVDSWRWSDGSESSFR---NWNTFQ 77

                        90       100       110
                ....*....|....*....|....*....|.
gi 10863957 348 PNnvGEEDCAEFSGNG-WNDDKCNLAKFWIC 377
Cdd:cd03602  78 PF--GQGDCATMYSSGrWYAALCSALKPFIC 106
PHA03097 PHA03097
C-type lectin-like protein; Provisional
 256-377 1.51e-08

C-type lectin-like protein; Provisional


Pssm-ID: 222982 [Multi-domain]  Cd Length: 157  Bit Score: 53.33  E-value: 1.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNF----LQLQSsrsnrfTWMGLSDLNQEGTWQWVD 331
Cdd:PHA03097  46 CRSGWVGYNNKCYTFSENITNKHLAIERCADMDGILTLIDDQKEVLFvsryKGGQD------LWIGIEKKKGDDDDREVL 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 10863957  332 GSPLLPSfkqywnrgepnnvGEEDCAEFSGNGWNDDKCNLAKFWIC 377
Cdd:PHA03097 120 DKVVKPP-------------KSGKCAYLKDKTIISSNCNATKGWIC 152
CLECT_EMBP_like cd03598
C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major ...
 265-377 9.01e-08

C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH); CLECT_EMBP_like: C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Eosinophils and basophils carry out various functions in allergic, parasitic, and inflammatory diseases. EMBP is stored in eosinophil crystalloid granules and is released upon degranulation. EMBP is also expressed in basophils. The proform of EMBP is expressed in placental X cells and breast tissue and increases significantly during human pregnancy. EMBP has cytotoxic properties and damages bacteria and mammalian cells, in vitro, as well as, helminth parasites. EMBP deposition has been observed in the inflamed tissue of allergy patients in a variety of diseases including asthma, atopic dermatitis, and rhinitis. In addition to its cytotoxic functions, EMBP activates cells and stimulates cytokine production. EMBP has been shown to bind the proteoglycan heparin. The binding site is similar to the carbohydrate binding site of other classical CTLD, such as mannose-binding protein (MBP1), however, heparin binding to EMBP is calcium ion independent. MBPH has reduced potency in cytotoxic and cytostimulatory assays compared with EMBP.


Pssm-ID: 153068  Cd Length: 117  Bit Score: 50.14  E-value: 9.01e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 265 GNCYFMSNSQRNWHDSITACKEV-GAQLVVIKSAEEQNFLQLQSSRSNR-FTWMGLSDLNQEGTWQ--WVDGSPLLPSfk 340
Cdd:cd03598   1 GRCYRFVKSPRTFRDAQVICRRCyRGNLASIHSFAFNYRVQRLVSTLNQaQVWIGGIITGKGRCRRfsWVDGSVWNYA-- 78

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 10863957 341 qYWNRGEPNNvGEEDCAEFSGNG--WNDDKCNLAKFWIC 377
Cdd:cd03598  79 -YWAPGQPGN-RRGHCVELCTRGghWRRAHCKLRRPFIC 115
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
53-225 1.31e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 53.87  E-value: 1.31e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  53 LAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELpeKSKLQEIYQELTRLKA 132
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL--SARYTPNHPDVIALRA 298

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 133 AVGELpEKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTRLKAAVGELPEKSKQqeiYQELTRlkaavgelpEKSKQ 212
Cdd:COG3206 299 QIAAL-RAQLQQEAQRILASLEAELEAL--QAREASLQAQLAQLEARLAELPELEAE---LRRLER---------EVEVA 363

                       170
                ....*....|....
gi 10863957 213 QEIYQE-LTRLKAA 225
Cdd:COG3206 364 RELYESlLQRLEEA 377
CLECT_chondrolectin_like cd03595
C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins ...
 268-378 2.01e-07

C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin; CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane linker molecules which link actin to receptors in the plasma membrane. Layilin co-localizes in with talin in membrane ruffles and may mediate signals from the ECM to the cell cytoskeleton.


Pssm-ID: 153065  Cd Length: 149  Bit Score: 49.89  E-value: 2.01e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 268 YFMSNSQR-NWHDSITACKEVGAQLVVIKSAEEQ----NFLQLQSSRSNRFtWMGL---SDLNQEGT-----WQWVDGSP 334
Cdd:cd03595  17 YFQDSRRRlNFEEARQACREDGGELLSIESENEQklieRFIQTLRASDGDF-WIGLrrsSQYNVTSSacsslYYWLDGSI 95

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 10863957 335 llPSFKQyWNRGEPNnVGEEDCAEF-------SGNG------WNDDKCNLAKFWICK 378
Cdd:cd03595  96 --STFRN-WYVDEPS-CGSEVCVVMyhqpsapAGQGgpylfqWNDDNCNMKNNFICK 148
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
95-244 9.83e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 50.79  E-value: 9.83e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  95 SKLQEIYQELTQLKAAVGELpeKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTWLKAAVGEL-----PEKSKMQEI 169
Cdd:COG3206 219 QQLSELESQLAEARAELAEA--EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELsarytPNHPDVIAL 296

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 170 YQELTRLKAAVgelpekskQQEIYQELTRLKAAVGELpeKSKQQEIYQELTRLKAAVGELPEKSKQ-----------QEI 238
Cdd:COG3206 297 RAQIAALRAQL--------QQEAQRILASLEAELEAL--QAREASLQAQLAQLEARLAELPELEAElrrlerevevaREL 366


                ....*.
gi 10863957 239 YQELTQ 244
Cdd:COG3206 367 YESLLQ 372
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
80-252 1.23e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 50.54  E-value: 1.23e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  80 NLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGElpeksKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTWLKAAVGE 159
Cdd:COG4717  69 NLKELKELEEELKEAEEKEEEYAELQEELEELEE-----ELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 160 LPEksKMQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELpeKSKQQEIY 239
Cdd:COG4717 144 LPE--RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL--EEELEEAQ 219

                       170
                ....*....|...
gi 10863957 240 QELTQLKAAVERL 252
Cdd:COG4717 220 EELEELEEELEQL 232
CLECT_TC14_like cd03601
C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 ...
 276-379 4.12e-06

C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm; CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproduction. It may also act as a differentiation inducing factor. Galactose inhibits the cytostatic activity of TC14-3. The gene for Acorn worm PfG6 is gill-specific; PfG6 may be a secreted protein.


Pssm-ID: 153071  Cd Length: 119  Bit Score: 45.60  E-value: 4.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 276 NWHDSITACKEVGAQLVVIKS--AEEQNFLQLQSSRSNRFTWMGLSDL-NQEGTWQWVDGSpLLPSFKQYWNRGEPNN-V 351
Cdd:cd03601  11 NYAKAGAFCRSRGMRLASLAMrdSEMRDAILAFTLVKGHGYWVGADNLqDGEYDFLWNDGV-SLPTDSDLWAPNEPSNpQ 89

                        90       100       110
                ....*....|....*....|....*....|
gi 10863957 352 GEEDCAE--FSGNGWNDDKCNLAKFWICKK 379
Cdd:cd03601  90 SRQLCVQlwSKYNLLDDEYCGRAKRVICEK 119
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
45-252 7.98e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 47.84  E-value: 7.98e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  45 LQLLSFTLLAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVG-----ELSEKSKLQEIYQELTQLKAAVGELPEKSK 119
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGlppdlSPEELLELLDRIEELQELLREAEELEEELQ 364

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 120 LQEIYQELTRLKAAVG-----ELPEKSKLQEIYQELtwlkaavgelpeKSKMQEIYQELTRLKAAVGELPEKSKQQEIYQ 194
Cdd:COG4717 365 LEELEQEIAALLAEAGvedeeELRAALEQAEEYQEL------------KEELEELEEQLEELLGELEELLEALDEEELEE 432

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 10863957 195 ELTRLKAAVGELPEKskQQEIYQELTRLKAAVGELPEKSKQQEIYQELTQLKAAVERL 252
Cdd:COG4717 433 ELEELEEELEELEEE--LEELREELAELEAELEQLEEDGELAELLQELEELKAELREL 488
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
67-224 2.87e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 46.30  E-value: 2.87e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  67 ISQEQSRQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEksKLQEIYQELTRLKAAVGELPEKSKLQEI 146
Cdd:COG4717  97 LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPE--RLEELEERLEELRELEEELEELEAELAE 174

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 10863957 147 YQELTWLKAAVGELPEKSKMQEIYQELTRLKAAVGELpeKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKA 224
Cdd:COG4717 175 LQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL--EEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
59-252 4.23e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 4.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   59 QVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKskLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKA-AVGEL 137
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEER--IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEeYLDEL 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  138 PEKSKLQEIY-QELTWLKAAVGELPEK-SKMQEIYQELTRLKAAVGELPEKskqQEIYQELTRLKAAVGELPEKSKQ--- 212
Cdd:PRK03918 310 REIEKRLSRLeEEINGIEERIKELEEKeERLEELKKKLKELEKRLEELEER---HELYEEAKAKKEELERLKKRLTGltp 386

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 10863957  213 QEIYQELTRLKAAVGELPEK-----SKQQEIYQELTQLKAAVERL 252
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEiskitARIGELKKEIKELKKAIEEL 431
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
56-252 9.28e-05

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 43.75  E-value: 9.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  56 LLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEksKLQEIYQELTQLKAAVGEL----PEKSKLQEIYQEL---- 127
Cdd:COG1340  48 LNAQVKELREEAQELREKRDELNEKVKELKEERDELNE--KLNELREELDELRKELAELnkagGSIDKLRKEIERLewrq 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 128 ---------------------TRLKAAVGELPEKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTRLKAAVGELpeK 186
Cdd:COG1340 126 qtevlspeeekelvekikeleKELEKAKKALEKNEKLKELRAELKELRKEAEEI--HKKIKELAEEAQELHEEMIEL--Y 201

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 10863957 187 SKQQEIYQELTRLKAAVGELPEKSKqqEIYQELTRLKAAVGELPEKSKQQEIYQELTQLKAAVERL 252
Cdd:COG1340 202 KEADELRKEADELHKEIVEAQEKAD--ELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEEL 265
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
50-252 1.01e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.67  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   50 FTLLAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELSEKskLQEIYQELTQLK-AAVGELPEKSK-LQEIYQEL 127
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE--LAELLKELEELGfESVEELEERLKeLEPFYNEY 604

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  128 TRLKAAVGELPEKSKLQEIYQELtwLKAAVGELPE-KSKMQEIYQELTRLKAAVGELPEKSKQQ---EIYQELTRLKAAV 203
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEE--LDKAFEELAEtEKRLEELRKELEELEKKYSEEEYEELREeylELSRELAGLRAEL 682

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 10863957  204 GELpeKSKQQEIYQELTRLKAAVGELPEKSKqqeiyqELTQLKAAVERL 252
Cdd:PRK03918 683 EEL--EKRREEIKKTLEKLKEELEEREKAKK------ELEKLEKALERV 723
PHA02867 PHA02867
C-type lectin protein; Provisional
 256-303 1.50e-04

C-type lectin protein; Provisional


Pssm-ID: 165201  Cd Length: 167  Bit Score: 41.98  E-value: 1.50e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 10863957  256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFL 303
Cdd:PHA02867  49 CPDEWIGYNSKCYYFTINETNWNDSKKLCDVMDSSLIRFDNIETLNFV 96
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 96-250 1.77e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.60  E-value: 1.77e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  96 KLQEIYQELTQLKAAVGELPEksklqeiyqELTRLKAAVGELpeKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTR 175
Cdd:COG1579  11 DLQELDSELDRLEHRLKELPA---------ELAELEDELAAL--EARLEAAKTELEDLEKEIKRL--ELEIEEVEARIKK 77

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 10863957 176 LKAAVGELpEKSKQQEIYQ-ELTRLKAAVGELpeKSKQQEIYQELTRLKAAVGELpeKSKQQEIYQELTQLKAAVE 250
Cdd:COG1579  78 YEEQLGNV-RNNKEYEALQkEIESLKRRISDL--EDEILELMERIEELEEELAEL--EAELAELEAELEEKKAELD 148
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
65-252 4.51e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 41.82  E-value: 4.51e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  65 SSISQEQSRQDAIYQNLTQLKAAVGELSEK-----SKLQEIYQELTQLKAAVGELPE-----KSKLQEIYQELTRLKAAV 134
Cdd:COG1340   1 SKTDELSSSLEELEEKIEELREEIEELKEKrdelnEELKELAEKRDELNAQVKELREeaqelREKRDELNEKVKELKEER 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 135 GELpeKSKLQEIYQELTWLKAAVGEL-----PEKSKMQEIYQELTRLKAAVgeLPeKSKQQEIYQEL----TRLKAAVGE 205
Cdd:COG1340  81 DEL--NEKLNELREELDELRKELAELnkaggSIDKLRKEIERLEWRQQTEV--LS-PEEEKELVEKIkeleKELEKAKKA 155

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 10863957 206 LPEKSKQQEIYQELTRLKAAVGELPEK-----SKQQEIYQELTQLKAAVERL 252
Cdd:COG1340 156 LEKNEKLKELRAELKELRKEAEEIHKKikelaEEAQELHEEMIELYKEADEL 207
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 85-247 1.82e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.58  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   85 KAAVGElsEKSKLQEIYQELTQLKAavgELPEKSK-LQEIYQELTRLKAAVGElpEKSKLQEIYQELtwlkaavgelpeK 163
Cdd:PRK00409 508 KKLIGE--DKEKLNELIASLEELER---ELEQKAEeAEALLKEAEKLKEELEE--KKEKLQEEEDKL------------L 568

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  164 SKMQEIYQEltRLKAAvgelpekskQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEksKQQEIYQELT 243
Cdd:PRK00409 569 EEAEKEAQQ--AIKEA---------KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK--KKKKQKEKQE 635


                 ....
gi 10863957  244 QLKA 247
Cdd:PRK00409 636 ELKV 639
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
82-219 3.09e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 39.12  E-value: 3.09e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  82 TQLKAAVGELSEKSKLQEIYQELTQLKAAVGELpeKSKLQEIYQELTRLKAAVGELpeKSKLQEIYQELTWLKAAVGELP 161
Cdd:COG1340 147 KELEKAKKALEKNEKLKELRAELKELRKEAEEI--HKKIKELAEEAQELHEEMIEL--YKEADELRKEADELHKEIVEAQ 222

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 10863957 162 EKSKmqEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKqqEIYQEL 219
Cdd:COG1340 223 EKAD--ELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAE--EIFEKL 276
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
71-253 7.42e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.74  E-value: 7.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957   71 QSRQDAIYQNLTQLKAAVGEL-SEKSKLQEIYQELTQLKAAVGelpeKSKLQEIYQELTRLKAavgELPEKSKLQEIYQE 149
Cdd:COG4913  294 EAELEELRAELARLEAELERLeARLDALREELDELEAQIRGNG----GDRLEQLEREIERLER---ELEERERRRARLEA 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  150 ltWLKAAvgELPEKSKMQEIYQELTRLKAAVGELPEKSKQQEiyQELTRLKAAVGELpeKSKQQEIYQELTRLKAAVGEL 229
Cdd:COG4913  367 --LLAAL--GLPLPASAEEFAALRAEAAALLEALEEELEALE--EALAEAEAALRDL--RRELRELEAEIASLERRKSNI 438

                        170       180
                 ....*....|....*....|....
gi 10863957  230 PekskqqeiyQELTQLKAAVERLC 253
Cdd:COG4913  439 P---------ARLLALRDALAEAL 453
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
46-265 9.74e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 37.96  E-value: 9.74e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957  46 QLLSFTLLAGLLVQVSKVPSSISQEQSRQDAIYQNLTQLKAAVGELseKSKLQEIYQELTQLKAAVGELPEKskLQEIYQ 125
Cdd:COG4372  12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQA--REELEQLEEELEQARSELEQLEEE--LEELNE 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 126 ELTRLKAAVGELpeKSKLQEIYQELTWLKAAVGELpeKSKMQEIYQELTRLKAAVGELPEKSKQQEiyQELTRLKaavge 205
Cdd:COG4372  88 QLQAAQAELAQA--QEELESLQEEAEELQEELEEL--QKERQDLEQQRKQLEAQIAELQSEIAERE--EELKELE----- 156

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 10863957 206 lpekSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTQLKAAVERLCHPCPWEWTFFQG 265
Cdd:COG4372 157 ----EQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESL 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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