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Conserved domains on  [gi|225543388|ref|NP_062527|]
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GTP-binding protein 2 isoform 1 [Mus musculus]

Protein Classification

selenocysteine-specific translation elongation factor( domain architecture ID 10135033)

selenocysteine-specific translation elongation factor binds GTP and GDP and transfers selenocysteyl-tRNA to the ribosome

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GTPBP1_like cd04165
GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 ...
 174-394 5.12e-130

GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM.


:

Pssm-ID: 206728 [Multi-domain]  Cd Length: 224  Bit Score: 380.10  E-value: 5.12e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 174 RVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAE---EICE 250
Cdd:cd04165    1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSDGEVVNYPDNHLGEldvEICE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 251 SSSKMITFIDLAGHHKYLHTTIFGLTSYCPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:cd04165   81 KSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAMLVVGANAGIIGMTKEHLGLALALKVPVFVVVTKIDMTPANVLQETL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225543388 331 RQLERVLKQPGCHKVPMLVTSEDDAVTAAQQFaQSPNVTPIFTLSSVSGESLDLLKVFLNILPP 394
Cdd:cd04165  161 KDLKRLLKSPGVRKLPVPVKSKDDVVLSASNL-SSGRVVPIFQVSNVTGEGLDLLRRFLNLLPP 223
GTPBP_III cd03708
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ...
 501-588 4.37e-42

Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


:

Pssm-ID: 294007 [Multi-domain]  Cd Length: 87  Bit Score: 146.12  E-value: 4.37e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 501 TICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHaKDKLRTGEKAVVRFRFLKHPEYLKVGAKLLFREGVTK 580
Cdd:cd03708    1 RACWEFEAEVLVLHHPTTISPGYQPVVHCGTIRQTARIISID-KEVLRTGDRALVRFRFLYRPEYLREGQRLIFREGRTK 79


                 ....*...
gi 225543388 581 GIGHVTDV 588
Cdd:cd03708   80 GIGTVTKV 87
GTPBP_II cd03694
Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to ...
 409-495 1.17e-40

Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


:

Pssm-ID: 293895 [Multi-domain]  Cd Length: 87  Bit Score: 142.36  E-value: 1.17e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 409 TEFQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDDGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLR 488
Cdd:cd03694    1 FEFQIDDIYSVPGVGTVVSGTVSKGVIREGDTLLLGPDADGKFRPVTVKSIHRNRQPVDRARAGQSASFALKKIKRESLR 80


                 ....*..
gi 225543388 489 KGMVMVS 495
Cdd:cd03694   81 KGMVLVS 87
 
Name Accession Description Interval E-value
GTPBP1_like cd04165
GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 ...
 174-394 5.12e-130

GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM.


Pssm-ID: 206728 [Multi-domain]  Cd Length: 224  Bit Score: 380.10  E-value: 5.12e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 174 RVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAE---EICE 250
Cdd:cd04165    1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSDGEVVNYPDNHLGEldvEICE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 251 SSSKMITFIDLAGHHKYLHTTIFGLTSYCPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:cd04165   81 KSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAMLVVGANAGIIGMTKEHLGLALALKVPVFVVVTKIDMTPANVLQETL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225543388 331 RQLERVLKQPGCHKVPMLVTSEDDAVTAAQQFaQSPNVTPIFTLSSVSGESLDLLKVFLNILPP 394
Cdd:cd04165  161 KDLKRLLKSPGVRKLPVPVKSKDDVVLSASNL-SSGRVVPIFQVSNVTGEGLDLLRRFLNLLPP 223
GTPBP_III cd03708
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ...
 501-588 4.37e-42

Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


Pssm-ID: 294007 [Multi-domain]  Cd Length: 87  Bit Score: 146.12  E-value: 4.37e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 501 TICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHaKDKLRTGEKAVVRFRFLKHPEYLKVGAKLLFREGVTK 580
Cdd:cd03708    1 RACWEFEAEVLVLHHPTTISPGYQPVVHCGTIRQTARIISID-KEVLRTGDRALVRFRFLYRPEYLREGQRLIFREGRTK 79


                 ....*...
gi 225543388 581 GIGHVTDV 588
Cdd:cd03708   80 GIGTVTKV 87
GTPBP_II cd03694
Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to ...
 409-495 1.17e-40

Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


Pssm-ID: 293895 [Multi-domain]  Cd Length: 87  Bit Score: 142.36  E-value: 1.17e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 409 TEFQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDDGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLR 488
Cdd:cd03694    1 FEFQIDDIYSVPGVGTVVSGTVSKGVIREGDTLLLGPDADGKFRPVTVKSIHRNRQPVDRARAGQSASFALKKIKRESLR 80


                 ....*..
gi 225543388 489 KGMVMVS 495
Cdd:cd03694   81 KGMVLVS 87
SelB COG3276
Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure ...
 256-590 2.01e-25

Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure and biogenesis]; Selenocysteine-specific translation elongation factor SelB is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 442507 [Multi-domain]  Cd Length: 630  Bit Score: 111.16  E-value: 2.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 256 ITFIDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVP-FFIVVSKVDLCAKTTVERTVRQLE 334
Cdd:COG3276   53 LGFVDVPGHEKFIKNMLAGAGGI--DLVLLVVAADEGVMPQTREHLAILDLLGIKrGIVVLTKADLVDEEWLELVEEEIR 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 335 RVLKQpgchkvpmlvTSEDDAvtaaqqfaqspnvtPIFTLSSVSGESLDLLKVFLnilppltnskeqEELMQQLTEFQ-- 412
Cdd:COG3276  131 ELLAG----------TFLEDA--------------PIVPVSAVTGEGIDELRAAL------------DALAAAVPARDad 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 413 ------VDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDdgcfLELRVCSIQ-RNRSACRVlRAGQAATLALGDFDRA 485
Cdd:COG3276  175 gpfrlpIDRVFSIKGFGTVVTGTLLSGTVRVGDELELLPSG----KPVRVRGIQvHGQPVEEA-YAGQRVALNLAGVEKE 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 486 LLRKGMVMVSPEmNPTICSVFEAEIVLLFHAT-TFRRGFQVTVHVGNVRQTAVVeKIHAKDKLRTGEKAVVRFRfLKHPE 564
Cdd:COG3276  250 EIERGDVLAAPG-ALRPTDRIDVRLRLLPSAPrPLKHWQRVHLHHGTAEVLARV-VLLDREELAPGEEALAQLR-LEEPL 326

                        330       340
                 ....*....|....*....|....*....
gi 225543388 565 YLKVGAKLLFREG---VTKGIGHVTDVQA 590
Cdd:COG3276  327 VAARGDRFILRDYsprRTIGGGRVLDPNP 355
GTP_EFTU pfam00009
Elongation factor Tu GTP binding domain; This domain contains a P-loop motif, also found in ...
 175-394 3.94e-23

Elongation factor Tu GTP binding domain; This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.


Pssm-ID: 425418 [Multi-domain]  Cd Length: 187  Bit Score: 96.83  E-value: 3.94e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388  175 VAVLGNVDSGKSTLLGVLTQ--GELDNGRGRA---RLNLFRHLHEIQSGRTSSISfeilgfnskgevvnysdsrTAEeiC 249
Cdd:pfam00009   6 IGIIGHVDHGKTTLTDRLLYytGAISKRGEVKgegEAGLDNLPEERERGITIKSA-------------------AVS--F 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388  250 ESSSKMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERT 329
Cdd:pfam00009  65 ETKDYLINLIDTPGHVDFVKEVIRGLAQ--ADGAILVVDAVEGVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEV 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543388  330 VRQLERVLkqpgchkvpmlvtseddavtaAQQFAQSPNVTPIFTLSSVSGESLD-LLKVFLNILPP 394
Cdd:pfam00009 143 VEEVSREL---------------------LEKYGEDGEFVPVVPGSALKGEGVQtLLDALDEYLPS 187
PRK10512 PRK10512
selenocysteinyl-tRNA-specific translation factor; Provisional
 175-490 5.82e-12

selenocysteinyl-tRNA-specific translation factor; Provisional


Pssm-ID: 182508 [Multi-domain]  Cd Length: 614  Bit Score: 68.54  E-value: 5.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLLGVLTqgeldnGRGRARLNlfrhlHEIQSGRTSSisfeiLGFNskgevvnY---SDSRtaeeices 251
Cdd:PRK10512   3 IATAGHVDHGKTTLLQAIT------GVNADRLP-----EEKKRGMTID-----LGYA-------YwpqPDGR-------- 51

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 252 sskMITFIDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLG-LALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:PRK10512  52 ---VLGFIDVPGHEKFLSNMLAGVGGI--DHALLVVACDDGVMAQTREHLAiLQLTGNPMLTVALTKADRVDEARIAEVR 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 331 RQLErvlkqpgchkvpmlvtseddAVTAAQQFAQSpnvtPIFTLSSVSGESLDLLKVFLNILPpltnskEQEELMQQLTE 410
Cdd:PRK10512 127 RQVK--------------------AVLREYGFAEA----KLFVTAATEGRGIDALREHLLQLP------EREHAAQHRFR 176

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 411 FQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVgptdDGCFLELRVCSIQRNRSACRVLRAGQAATLAL-GDFDRALLRK 489
Cdd:PRK10512 177 LAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWL----TGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIaGDAEKEQINR 252


                 .
gi 225543388 490 G 490
Cdd:PRK10512 253 G 253
GTP_EFTU_D2 pfam03144
Elongation factor Tu domain 2; Elongation factor Tu consists of three structural domains, this ...
 423-494 3.14e-05

Elongation factor Tu domain 2; Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.


Pssm-ID: 427163 [Multi-domain]  Cd Length: 73  Bit Score: 42.25  E-value: 3.14e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 225543388  423 GTVVGGTLSSGICREGDQLVVGPTD-DGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLRKGMVMV 494
Cdd:pfam03144   1 GTVATGRVESGTLKKGDKVRILPNGtGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAGVGLEDIRVGDTLT 73
 
Name Accession Description Interval E-value
GTPBP1_like cd04165
GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 ...
 174-394 5.12e-130

GTP binding protein 1 (GTPBP1)-like family includes GTPBP2; Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM.


Pssm-ID: 206728 [Multi-domain]  Cd Length: 224  Bit Score: 380.10  E-value: 5.12e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 174 RVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAE---EICE 250
Cdd:cd04165    1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSDGEVVNYPDNHLGEldvEICE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 251 SSSKMITFIDLAGHHKYLHTTIFGLTSYCPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:cd04165   81 KSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAMLVVGANAGIIGMTKEHLGLALALKVPVFVVVTKIDMTPANVLQETL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225543388 331 RQLERVLKQPGCHKVPMLVTSEDDAVTAAQQFaQSPNVTPIFTLSSVSGESLDLLKVFLNILPP 394
Cdd:cd04165  161 KDLKRLLKSPGVRKLPVPVKSKDDVVLSASNL-SSGRVVPIFQVSNVTGEGLDLLRRFLNLLPP 223
GTPBP_III cd03708
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ...
 501-588 4.37e-42

Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


Pssm-ID: 294007 [Multi-domain]  Cd Length: 87  Bit Score: 146.12  E-value: 4.37e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 501 TICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHaKDKLRTGEKAVVRFRFLKHPEYLKVGAKLLFREGVTK 580
Cdd:cd03708    1 RACWEFEAEVLVLHHPTTISPGYQPVVHCGTIRQTARIISID-KEVLRTGDRALVRFRFLYRPEYLREGQRLIFREGRTK 79


                 ....*...
gi 225543388 581 GIGHVTDV 588
Cdd:cd03708   80 GIGTVTKV 87
GTPBP_II cd03694
Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to ...
 409-495 1.17e-40

Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.


Pssm-ID: 293895 [Multi-domain]  Cd Length: 87  Bit Score: 142.36  E-value: 1.17e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 409 TEFQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDDGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLR 488
Cdd:cd03694    1 FEFQIDDIYSVPGVGTVVSGTVSKGVIREGDTLLLGPDADGKFRPVTVKSIHRNRQPVDRARAGQSASFALKKIKRESLR 80


                 ....*..
gi 225543388 489 KGMVMVS 495
Cdd:cd03694   81 KGMVLVS 87
GTP_translation_factor cd00881
GTP translation factor family primarily contains translation initiation, elongation and ...
 174-394 5.70e-36

GTP translation factor family primarily contains translation initiation, elongation and release factors; The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.


Pssm-ID: 206647 [Multi-domain]  Cd Length: 183  Bit Score: 133.19  E-value: 5.70e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 174 RVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLF--RHLHEIQSGRTSSISFEILGFNSKgevvnysdsrtaeeices 251
Cdd:cd00881    1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFldTLKEERERGITIKTGVVEFEWPKR------------------ 62

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 252 sskMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTVR 331
Cdd:cd00881   63 ---RINFIDTPGHEDFSKETVRGLAQ--ADGALLVVDANEGVEPQTREHLNIALAGGLPIIVAVNKIDRVGEEDFDEVLR 137

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225543388 332 QLERVLKQPGCHKVPmlvtseddavtaaqqfaqsPNVTPIFTLSSVSGES-LDLLKVFLNILPP 394
Cdd:cd00881  138 EIKELLKLIGFTFLK-------------------GKDVPIIPISALTGEGiEELLDAIVEHLPP 182
SelB COG3276
Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure ...
 256-590 2.01e-25

Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure and biogenesis]; Selenocysteine-specific translation elongation factor SelB is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 442507 [Multi-domain]  Cd Length: 630  Bit Score: 111.16  E-value: 2.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 256 ITFIDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVP-FFIVVSKVDLCAKTTVERTVRQLE 334
Cdd:COG3276   53 LGFVDVPGHEKFIKNMLAGAGGI--DLVLLVVAADEGVMPQTREHLAILDLLGIKrGIVVLTKADLVDEEWLELVEEEIR 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 335 RVLKQpgchkvpmlvTSEDDAvtaaqqfaqspnvtPIFTLSSVSGESLDLLKVFLnilppltnskeqEELMQQLTEFQ-- 412
Cdd:COG3276  131 ELLAG----------TFLEDA--------------PIVPVSAVTGEGIDELRAAL------------DALAAAVPARDad 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 413 ------VDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDdgcfLELRVCSIQ-RNRSACRVlRAGQAATLALGDFDRA 485
Cdd:COG3276  175 gpfrlpIDRVFSIKGFGTVVTGTLLSGTVRVGDELELLPSG----KPVRVRGIQvHGQPVEEA-YAGQRVALNLAGVEKE 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 486 LLRKGMVMVSPEmNPTICSVFEAEIVLLFHAT-TFRRGFQVTVHVGNVRQTAVVeKIHAKDKLRTGEKAVVRFRfLKHPE 564
Cdd:COG3276  250 EIERGDVLAAPG-ALRPTDRIDVRLRLLPSAPrPLKHWQRVHLHHGTAEVLARV-VLLDREELAPGEEALAQLR-LEEPL 326

                        330       340
                 ....*....|....*....|....*....
gi 225543388 565 YLKVGAKLLFREG---VTKGIGHVTDVQA 590
Cdd:COG3276  327 VAARGDRFILRDYsprRTIGGGRVLDPNP 355
GTP_EFTU pfam00009
Elongation factor Tu GTP binding domain; This domain contains a P-loop motif, also found in ...
 175-394 3.94e-23

Elongation factor Tu GTP binding domain; This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.


Pssm-ID: 425418 [Multi-domain]  Cd Length: 187  Bit Score: 96.83  E-value: 3.94e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388  175 VAVLGNVDSGKSTLLGVLTQ--GELDNGRGRA---RLNLFRHLHEIQSGRTSSISfeilgfnskgevvnysdsrTAEeiC 249
Cdd:pfam00009   6 IGIIGHVDHGKTTLTDRLLYytGAISKRGEVKgegEAGLDNLPEERERGITIKSA-------------------AVS--F 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388  250 ESSSKMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERT 329
Cdd:pfam00009  65 ETKDYLINLIDTPGHVDFVKEVIRGLAQ--ADGAILVVDAVEGVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEV 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543388  330 VRQLERVLkqpgchkvpmlvtseddavtaAQQFAQSPNVTPIFTLSSVSGESLD-LLKVFLNILPP 394
Cdd:pfam00009 143 VEEVSREL---------------------LEKYGEDGEFVPVVPGSALKGEGVQtLLDALDEYLPS 187
TEF1 COG5256
Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and ...
 173-561 2.28e-17

Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]; Translation elongation factor EF-1alpha (GTPase) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 444074 [Multi-domain]  Cd Length: 423  Bit Score: 84.60  E-value: 2.28e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 173 LRVAVLGNVDSGKSTL-------LGVLTQGELDNGR------GRARLN----LFRHLHEIQSGRTSSISFEilGFNSKge 235
Cdd:COG5256    8 LNLVVIGHVDHGKSTLvgrllyeTGAIDEHIIEKYEeeaekkGKESFKfawvMDRLKEERERGVTIDLAHK--KFETD-- 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 236 vvNYsdsrtaeeicessskMITFIDLAGHHKYLHTTIFGlTSYCpDCALLLVSANTGIAGTTREHLGLALALKVPFFIV- 314
Cdd:COG5256   84 --KY---------------YFTIIDAPGHRDFVKNMITG-ASQA-DAAILVVSAKDGVMGQTREHAFLARTLGINQLIVa 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 315 VSKVDLC--AKTTVERTVRQLERVLKQPG--CHKVPMLVTSeddAVTAAQQFAQSPNvTPIF---TLSsvsgESLDLLKV 387
Cdd:COG5256  145 VNKMDAVnySEKRYEEVKEEVSKLLKMVGykVDKIPFIPVS---AWKGDNVVKKSDN-MPWYngpTLL----EALDNLKE 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 388 flnilPPLTNSKEqeelmqqlTEFQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTddGCFLELRvcSIQRNRSACR 467
Cdd:COG5256  217 -----PEKPVDKP--------LRIPIQDVYSISGIGTVPVGRVETGVLKVGDKVVFMPA--GVVGEVK--SIEMHHEELE 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 468 VLRAGQAATLALGDFDRALLRKGMVMVSPEMNPTICSVFEAEIVLLFHATTFRRGFQVTVHVGN----VRQTAVVEKIHA 543
Cdd:COG5256  280 QAEPGDNIGFNVRGVEKNDIKRGDVAGHPDNPPTVAEEFTAQIVVLQHPSAITVGYTPVFHVHTaqvaCTFVELVSKLDP 359

                        410       420
                 ....*....|....*....|....*..
gi 225543388 544 K---------DKLRTGEKAVVRFRFLK 561
Cdd:COG5256  360 RtgqvkeenpQFLKTGDAAIVKIKPTK 386
SelB cd04171
SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; ...
 179-394 2.49e-16

SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea.


Pssm-ID: 206734 [Multi-domain]  Cd Length: 170  Bit Score: 76.88  E-value: 2.49e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 179 GNVDSGKSTLLGVLTQGELDngrgrarlnlfrHLHEIQSgRTSSISfeiLGFNskgevvnYSDSRtaeeicesSSKMITF 258
Cdd:cd04171    6 GHIDHGKTTLIKALTGIETD------------RLPEEKK-RGITID---LGFA-------YLDLP--------DGKRLGF 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 259 IDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVPFFIVV-SKVDLCAKTTVERTVRQLERVL 337
Cdd:cd04171   55 IDVPGHEKFVKNMLAGAGGI--DAVLLVVAADEGIMPQTREHLEILELLGIKKGLVVlTKADLVDEDRLELVEEEILELL 132

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 225543388 338 KQPGCHKVpmlvtseddavtaaqqfaqspnvtPIFTLSSVSGESLDLLKVFLNILPP 394
Cdd:cd04171  133 AGTFLADA------------------------PIFPVSSVTGEGIEELKNYLDELAE 165
PRK10512 PRK10512
selenocysteinyl-tRNA-specific translation factor; Provisional
 175-490 5.82e-12

selenocysteinyl-tRNA-specific translation factor; Provisional


Pssm-ID: 182508 [Multi-domain]  Cd Length: 614  Bit Score: 68.54  E-value: 5.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLLGVLTqgeldnGRGRARLNlfrhlHEIQSGRTSSisfeiLGFNskgevvnY---SDSRtaeeices 251
Cdd:PRK10512   3 IATAGHVDHGKTTLLQAIT------GVNADRLP-----EEKKRGMTID-----LGYA-------YwpqPDGR-------- 51

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 252 sskMITFIDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLG-LALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:PRK10512  52 ---VLGFIDVPGHEKFLSNMLAGVGGI--DHALLVVACDDGVMAQTREHLAiLQLTGNPMLTVALTKADRVDEARIAEVR 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 331 RQLErvlkqpgchkvpmlvtseddAVTAAQQFAQSpnvtPIFTLSSVSGESLDLLKVFLNILPpltnskEQEELMQQLTE 410
Cdd:PRK10512 127 RQVK--------------------AVLREYGFAEA----KLFVTAATEGRGIDALREHLLQLP------EREHAAQHRFR 176

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 411 FQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVgptdDGCFLELRVCSIQRNRSACRVLRAGQAATLAL-GDFDRALLRK 489
Cdd:PRK10512 177 LAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWL----TGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIaGDAEKEQINR 252


                 .
gi 225543388 490 G 490
Cdd:PRK10512 253 G 253
PLN03127 PLN03127
Elongation factor Tu; Provisional
 173-588 2.09e-09

Elongation factor Tu; Provisional


Pssm-ID: 178673 [Multi-domain]  Cd Length: 447  Bit Score: 59.84  E-value: 2.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 173 LRVAVLGNVDSGKSTLLGVLTqgeldngrgrarlnlfRHLHEIqsGRTSSISFEILGF----NSKGEVVNysdsrTAEEI 248
Cdd:PLN03127  62 VNVGTIGHVDHGKTTLTAAIT----------------KVLAEE--GKAKAVAFDEIDKapeeKARGITIA-----TAHVE 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 249 CESSSKMITFIDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVPFFIV-VSKVDLCAKTT-- 325
Cdd:PLN03127 119 YETAKRHYAHVDCPGHADYVKNMITGAAQM--DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVfLNKVDVVDDEEll 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 326 --VERTVRQLERVLKQPGcHKVPMLVTSeddAVTAAQQFAQSPNVTPIftlssvsgesLDLLKVFLNILPPLTNSKEQEE 403
Cdd:PLN03127 197 elVEMELRELLSFYKFPG-DEIPIIRGS---ALSALQGTNDEIGKNAI----------LKLMDAVDEYIPEPVRVLDKPF 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 404 LMqqltefQVDEIYTVPEVGTVVGGTLSSGICREGDQL-VVGPTDDGCfLELRVCSIQRNRsacRVLRAGQAAT---LAL 479
Cdd:PLN03127 263 LM------PIEDVFSIQGRGTVATGRVEQGTIKVGEEVeIVGLRPGGP-LKTTVTGVEMFK---KILDQGQAGDnvgLLL 332

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 480 GDFDRALLRKGMVMVSPEMNPTIcSVFEAEIVLLfhatTFRRGFQVTVHVGNVR-----QTAvveKIHAKDKLRTGEKAV 554
Cdd:PLN03127 333 RGLKREDVQRGQVICKPGSIKTY-KKFEAEIYVL----TKDEGGRHTPFFSNYRpqfylRTA---DVTGKVELPEGVKMV 404

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 225543388 555 -----VRFRF-LKHPEYLKVGAKLLFRE-GVTKGIGHVTDV 588
Cdd:PLN03127 405 mpgdnVTAVFeLISPVPLEPGQRFALREgGRTVGAGVVSKV 445
SelB_euk cd01889
SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; ...
 175-339 4.08e-09

SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea.


Pssm-ID: 206676 [Multi-domain]  Cd Length: 192  Bit Score: 56.61  E-value: 4.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLLGVLTQ----GELDNGRgrarlnlfrhlheiQSgRTSSISFEiLGFNSKgeVVNYSDSRTAEEICE 250
Cdd:cd01889    3 VGLLGHVDSGKTSLAKALSEiastAAFDKNP--------------QS-QERGITLD-LGFSSF--EVDKPKHLEDNENPQ 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 251 SSSKMITFIDLAGHHKYLHTTIFGltSYCPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTV 330
Cdd:cd01889   65 IENYQITLVDCPGHASLIRTIIGG--AQIIDLMLLVVDAKKGIQTQTAECLVIGELLCKPLIVVLNKIDLIPEEERKRKI 142


                 ....*....
gi 225543388 331 RQLERVLKQ 339
Cdd:cd01889  143 EKMKKRLQK 151
PLN00043 PLN00043
elongation factor 1-alpha; Provisional
 173-569 2.02e-08

elongation factor 1-alpha; Provisional


Pssm-ID: 165621 [Multi-domain]  Cd Length: 447  Bit Score: 57.02  E-value: 2.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 173 LRVAVLGNVDSGKSTLLGVLTQ--GELDN------GRGRARLNL--FRH---LHEIQSGRTSSISFEILGFnsKGEVVNY 239
Cdd:PLN00043   8 INIVVIGHVDSGKSTTTGHLIYklGGIDKrvierfEKEAAEMNKrsFKYawvLDKLKAERERGITIDIALW--KFETTKY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 240 sdsrtaeeicessskMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTG-------IAGTTREHLGLALALKVPFF 312
Cdd:PLN00043  86 ---------------YCTVIDAPGHRDFIKNMITGTSQ--ADCAVLIIDSTTGgfeagisKDGQTREHALLAFTLGVKQM 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 313 IVV-SKVDlcaKTTVERTVRQLERVLKQpgchkvpmlvtseddAVTAAQQFAQSPNVTPIFTLSSVSGESLDLLKVFLN- 390
Cdd:PLN00043 149 ICCcNKMD---ATTPKYSKARYDEIVKE---------------VSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDw 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 391 -----ILPPLTNSKEQEELMQQLTEFQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDdgcfLELRVCSIQRNRSA 465
Cdd:PLN00043 211 ykgptLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG----LTTEVKSVEMHHES 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 466 CRVLRAGQAATLALGDFDRALLRKGMVMVSPEMNPTICSV-FEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHAK 544
Cdd:PLN00043 287 LQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAAnFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTK 366

                        410       420
                 ....*....|....*....|....*
gi 225543388 545 DKLRTGEKavvrfrFLKHPEYLKVG 569
Cdd:PLN00043 367 IDRRSGKE------LEKEPKFLKNG 385
SelB_II cd03696
Domain II of elongation factor SelB; This subfamily represents the domain of elongation factor ...
 413-492 2.40e-08

Domain II of elongation factor SelB; This subfamily represents the domain of elongation factor SelB that is homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.


Pssm-ID: 293897 [Multi-domain]  Cd Length: 83  Bit Score: 51.37  E-value: 2.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 413 VDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDdgcfLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLRKGMV 492
Cdd:cd03696    5 IDHVFSIKGAGTVVTGTVLSGKVKVGDELEIPPLG----KEVRVRSIQVHDKPVEEAKAGDRVALNLTGVDAKELERGFV 80
IF2_eIF5B cd01887
Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B ...
 175-333 1.61e-06

Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.


Pssm-ID: 206674 [Multi-domain]  Cd Length: 169  Bit Score: 48.62  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLLGVLTqgELDNGRGRARlnlfrhlheiqsGRTSSI-SFEIlgfnskgevvnysdsrtaeEIcESSS 253
Cdd:cd01887    3 VTVMGHVDHGKTTLLDKIR--KTNVAAGEAG------------GITQHIgAYQV-------------------PI-DVKI 48

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 254 KMITFIDLAGHHKYLHTTIFG--LTsycpDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTT--VERT 329
Cdd:cd01887   49 PGITFIDTPGHEAFTNMRARGasVT----DIAILVVAADDGVMPQTIEAINHAKAANVPIIVAINKIDKPYGTEadPERV 124


                 ....
gi 225543388 330 VRQL 333
Cdd:cd01887  125 KNEL 128
infB CHL00189
translation initiation factor 2; Provisional
 143-333 5.28e-06

translation initiation factor 2; Provisional


Pssm-ID: 177089 [Multi-domain]  Cd Length: 742  Bit Score: 49.45  E-value: 5.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 143 EREVDYDSDVPRKITEVLVRKVPdnqqfldlRVAVLGNVDSGKSTLLGVLTQGELDNgrgrarlnlfrhlHEIqSGRTSS 222
Cdd:CHL00189 223 INEKTSNLDNTSAFTENSINRPP--------IVTILGHVDHGKTTLLDKIRKTQIAQ-------------KEA-GGITQK 280

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 223 I-SFEilgfnskgevVNYsdsrtaeeICESSSKMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTGIAGTTREHL 301
Cdd:CHL00189 281 IgAYE----------VEF--------EYKDENQKIVFLDTPGHEAFSSMRSRGANV--TDIAILIIAADDGVKPQTIEAI 340

                        170       180       190
                 ....*....|....*....|....*....|..
gi 225543388 302 GLALALKVPFFIVVSKVDLcAKTTVERTVRQL 333
Cdd:CHL00189 341 NYIQAANVPIIVAINKIDK-ANANTERIKQQL 371
EF-G_bact cd04170
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). ...
 175-333 1.06e-05

Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members.


Pssm-ID: 206733 [Multi-domain]  Cd Length: 268  Bit Score: 47.59  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLL-------GVLT-QGELDNGrgrarlNLFRHLHEIQSGRTSSISFEILGFNSKGevvnysdsrtae 246
Cdd:cd04170    2 IALVGHSGSGKTTLAeallyatGAIDrLGRVEDG------NTVSDYDPEEKKRKMSIETSVAPLEWNG------------ 63

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 247 eicesssKMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLcAKTTV 326
Cdd:cd04170   64 -------HKINLIDTPGYADFVGETLSALRA--VDAALIVVEAQSGVEVGTEKVWEFLDDAKLPRIIFINKMDR-ARADF 133


                 ....*..
gi 225543388 327 ERTVRQL 333
Cdd:cd04170  134 DKTLAAL 140
EF1_alpha cd01883
Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent ...
 175-320 1.46e-05

Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.


Pssm-ID: 206670 [Multi-domain]  Cd Length: 219  Bit Score: 46.33  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 175 VAVLGNVDSGKSTLLGVLTQ--GELDNgrgrarlnlfRHLHEI-----QSGRTSsisFEilgfnskgevvnYS---DSRT 244
Cdd:cd01883    2 LVVIGHVDAGKSTLTGHLLYklGGVDK----------RTIEKYekeakEMGKES---FK------------YAwvlDKLK 56

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 245 AE-------EIC----ESSSKMITFIDLAGHHKYLHTTIFGLTSycPDCALLLVSANTG-------IAGTTREHLGLALA 306
Cdd:cd01883   57 EErergvtiDVGlakfETEKYRFTIIDAPGHRDFVKNMITGASQ--ADVAVLVVSARKGefeagfeKGGQTREHALLART 134

                        170
                 ....*....|....*
gi 225543388 307 LKVPFFIV-VSKVDL 320
Cdd:cd01883  135 LGVKQLIVaVNKMDD 149
GTP_EFTU_D2 pfam03144
Elongation factor Tu domain 2; Elongation factor Tu consists of three structural domains, this ...
 423-494 3.14e-05

Elongation factor Tu domain 2; Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.


Pssm-ID: 427163 [Multi-domain]  Cd Length: 73  Bit Score: 42.25  E-value: 3.14e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 225543388  423 GTVVGGTLSSGICREGDQLVVGPTD-DGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLRKGMVMV 494
Cdd:pfam03144   1 GTVATGRVESGTLKKGDKVRILPNGtGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAGVGLEDIRVGDTLT 73
Translation_Factor_II_like cd01342
Domain II of Elongation factor Tu (EF-Tu)-like proteins; Elongation factor Tu consists of ...
 411-492 1.17e-04

Domain II of Elongation factor Tu (EF-Tu)-like proteins; Elongation factor Tu consists of three structural domains. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E. coli IF-2 to 30S subunits.


Pssm-ID: 293888 [Multi-domain]  Cd Length: 80  Bit Score: 40.71  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 411 FQVDEIYTVPEVGTVVGGTLSSGICREGDQLVVGPTDDGcfleLRVCSIQRNRSACRVLRAGQAATLA-LGDFDralLRK 489
Cdd:cd01342    3 MQVFKVFYIPGRGRVAGGRVESGTLKVGDEIRILPKGIT----GRVTSIERFHEEVDEAKAGDIVGIGiLGVKD---ILT 75


                 ...
gi 225543388 490 GMV 492
Cdd:cd01342   76 GDT 78
EF_Tu cd01884
Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes ...
 259-333 1.63e-04

Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.


Pssm-ID: 206671 [Multi-domain]  Cd Length: 195  Bit Score: 42.96  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 259 IDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVPFFIV-VSKVDLCAKTT----VERTVRQL 333
Cdd:cd01884   70 VDCPGHADYIKNMITGAAQM--DGAILVVSATDGPMPQTREHLLLARQVGVPYIVVfLNKADMVDDEEllelVEMEVREL 147
tufA CHL00071
elongation factor Tu
 259-439 2.30e-03

elongation factor Tu


Pssm-ID: 177010 [Multi-domain]  Cd Length: 409  Bit Score: 40.71  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 259 IDLAGHHKYLHTTIFGLTSYcpDCALLLVSANTGIAGTTREHLGLALALKVPFFIV-VSKVDLCAKTT----VERTVRQL 333
Cdd:CHL00071  80 VDCPGHADYVKNMITGAAQM--DGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVfLNKEDQVDDEEllelVELEVREL 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 334 ERVLKQPGcHKVPMLVTSeddAVTAAQQFAQSPNVTP--------IFTLSsvsgESLDllkvflNILPPLTNSKEQEELM 405
Cdd:CHL00071 158 LSKYDFPG-DDIPIVSGS---ALLALEALTENPKIKRgenkwvdkIYNLM----DAVD------SYIPTPERDTDKPFLM 223

                        170       180       190
                 ....*....|....*....|....*....|....
gi 225543388 406 qqltefQVDEIYTVPEVGTVVGGTLSSGICREGD 439
Cdd:CHL00071 224 ------AIEDVFSITGRGTVATGRIERGTVKVGD 251
HBS1_C_III cd04093
C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1); This model represents the ...
 502-588 4.74e-03

C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1); This model represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1), which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, which together with Dom34, promotes the No-go decay (NGD) of mRNA. The NGD targets mRNAs whose elongation stalled for degradation initiated by endonucleolytic cleavage in the vicinity of the stalled ribosome.


Pssm-ID: 294008 [Multi-domain]  Cd Length: 109  Bit Score: 37.14  E-value: 4.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543388 502 ICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHAKDKLRTGEK-------------AVVRFRFLK------H 562
Cdd:cd04093    4 TTSKFEARIVTFDLQVPILKGTPVVLHRHSLSEPATISKLVSTLDKSTGEVikkkprclgknqsAVVEIELERpipletF 83

                         90       100
                 ....*....|....*....|....*.
gi 225543388 563 PEYLKVGAKLLFREGVTKGIGHVTDV 588
Cdd:cd04093   84 KDNKELGRFVLRRGGETIAAGIVTEI 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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