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Conserved domains on  [gi|9506563|ref|NP_062270|]
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epidermal growth factor-like protein 6 precursor [Mus musculus]

Protein Classification

EGF_CA and MAM domain-containing protein( domain architecture ID 11256667)

EGF_CA and MAM domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
399-541 1.09e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.26  E-value: 1.09e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563  399 CSFDLGVCDWKQDREDDFDW-----------HPADRD--NDVGYYMAVPALAGHKKNIGRLKLLLPNLtPQSNFCLLFDY 465
Cdd:cd06263   1 CDFEDGLCGWTQDSTDDFDWtrvsgstpspgTPPDHThgTGSGHYLYVESSSGREGQKARLLSPLLPP-PRSSHCLSFWY 79
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9506563  466 RLAGDKVGKLRVFVKNSN---NALAWEETKNEDGRWRTGKIQLYQGIDTTKsVIFEAERGKGKTGEIAVDGVLLVSGLC 541
Cdd:cd06263  80 HMYGSGVGTLNVYVREEGgglGTLLWSASGGQGNQWQEAEVTLSASSKPFQ-VVFEGVRGSGSRGDIALDDISLSPGPC 157
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
221-256 9.62e-12

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


:

Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 59.53  E-value: 9.62e-12
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 9506563    221 CALNTHPCSPHANCLNTRGSFKCKCKQGYRGNGLQC 256
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
EGF_CA pfam07645
Calcium-binding EGF domain;
172-200 5.90e-07

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.69  E-value: 5.90e-07
                          10        20
                  ....*....|....*....|....*....
gi 9506563    172 DIDECASSKAVCPSNRRCVNTFGSYYCKC 200
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRC 29
EGF_CA smart00179
Calcium-binding EGF-like domain;
92-123 2.83e-04

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 2.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 9506563      92 DVNECgVKPRPCQH--RCVNTHGSYKCFCLSGHM 123
Cdd:smart00179   1 DIDEC-ASGNPCQNggTCVNTVGSYRCECPPGYT 33
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
399-541 1.09e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.26  E-value: 1.09e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563  399 CSFDLGVCDWKQDREDDFDW-----------HPADRD--NDVGYYMAVPALAGHKKNIGRLKLLLPNLtPQSNFCLLFDY 465
Cdd:cd06263   1 CDFEDGLCGWTQDSTDDFDWtrvsgstpspgTPPDHThgTGSGHYLYVESSSGREGQKARLLSPLLPP-PRSSHCLSFWY 79
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9506563  466 RLAGDKVGKLRVFVKNSN---NALAWEETKNEDGRWRTGKIQLYQGIDTTKsVIFEAERGKGKTGEIAVDGVLLVSGLC 541
Cdd:cd06263  80 HMYGSGVGTLNVYVREEGgglGTLLWSASGGQGNQWQEAEVTLSASSKPFQ-VVFEGVRGSGSRGDIALDDISLSPGPC 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
399-542 9.74e-22

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 92.04  E-value: 9.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563    399 CSFDLG-VCDWKQDREDDFDWH-----------PAD--RDNDVGYYMAVPALAGHKKNIGRL--KLLLPNLTPQsnfCLL 462
Cdd:pfam00629   1 CDFEDGnLCGWTQDSSDDFDWErvsgpsvktgpSSDhtQGTGSGHFMYVDTSSGAPGQTARLlsPLLPPSRSPQ---CLR 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563    463 FDYRLAGDKVGKLRVFVK---NSNNALAWEETKNEDGRWRTGKIQLYQGIDTTKsVIFEAERGKGKTGEIAVDGVLLVSG 539
Cdd:pfam00629  78 FWYHMSGSGVGTLRVYVRengGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQ-VVFEGIRGGGSRGGIALDDISLSSG 156

                  ...
gi 9506563    540 LCP 542
Cdd:pfam00629 157 PCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
399-541 7.17e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 83.93  E-value: 7.17e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563     399 CSFDLG-VCDWKQDREDDFDWH-----------PADRDNDVGYYMAVPALAGHKKNIGRLklLLPNLTPQ-SNFCLLFDY 465
Cdd:smart00137   6 CDFEEGsTCGWHQDSNDDGHWErvssatgipgpNRDHTTGNGHFMFFETSSGAEGQTARL--LSPPLYENrSTHCLTFWY 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563     466 RLAGDKVGKLRVFVKNSNNALA---WEETKNEDGRWRTGKI------QLYQgidttksVIFEAERGKGKTGEIAVDGVLL 536
Cdd:smart00137  84 YMYGSGSGTLNVYVRENNGSQDtllWSRSGTQGGQWLQAEValsswpQPFQ-------VVFEGTRGKGHSGYIALDDILL 156

                   ....*
gi 9506563     537 VSGLC 541
Cdd:smart00137 157 SNGPC 161
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
221-256 9.62e-12

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 59.53  E-value: 9.62e-12
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 9506563    221 CALNTHPCSPHANCLNTRGSFKCKCKQGYRGNGLQC 256
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
217-256 2.83e-08

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 49.55  E-value: 2.83e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 9506563     217 DINECALNtHPCSPHANCLNTRGSFKCKCKQGYRgNGLQC 256
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT-DGRNC 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
217-251 4.05e-08

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 49.17  E-value: 4.05e-08
                        10        20        30
                ....*....|....*....|....*....|....*
gi 9506563  217 DINECALNtHPCSPHANCLNTRGSFKCKCKQGYRG 251
Cdd:cd00054   1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34
EGF_CA pfam07645
Calcium-binding EGF domain;
172-200 5.90e-07

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.69  E-value: 5.90e-07
                          10        20
                  ....*....|....*....|....*....
gi 9506563    172 DIDECASSKAVCPSNRRCVNTFGSYYCKC 200
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRC 29
EGF_CA smart00179
Calcium-binding EGF-like domain;
172-205 3.12e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.77  E-value: 3.12e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 9506563     172 DIDECASsKAVCPSNRRCVNTFGSYYCKCHIGFE 205
Cdd:smart00179   1 DIDECAS-GNPCQNGGTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
172-208 5.23e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.39  E-value: 5.23e-06
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 9506563  172 DIDECASSkAVCPSNRRCVNTFGSYYCKCHIGFELKY 208
Cdd:cd00054   1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
92-123 2.83e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 2.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 9506563      92 DVNECgVKPRPCQH--RCVNTHGSYKCFCLSGHM 123
Cdd:smart00179   1 DIDEC-ASGNPCQNggTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
92-124 5.78e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 37.62  E-value: 5.78e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 9506563   92 DVNECgVKPRPCQH--RCVNTHGSYKCFCLSGHML 124
Cdd:cd00054   1 DIDEC-ASGNPCQNggTCVNTVGSYRCSCPPGYTG 34
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
96-136 2.39e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 35.68  E-value: 2.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 9506563     96 CGVKPRPCQHRCVNTHGSYKCFCLSGHMLLPDatcsnSRTC 136
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDD-----GRTC 36
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
399-541 1.09e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.26  E-value: 1.09e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563  399 CSFDLGVCDWKQDREDDFDW-----------HPADRD--NDVGYYMAVPALAGHKKNIGRLKLLLPNLtPQSNFCLLFDY 465
Cdd:cd06263   1 CDFEDGLCGWTQDSTDDFDWtrvsgstpspgTPPDHThgTGSGHYLYVESSSGREGQKARLLSPLLPP-PRSSHCLSFWY 79
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9506563  466 RLAGDKVGKLRVFVKNSN---NALAWEETKNEDGRWRTGKIQLYQGIDTTKsVIFEAERGKGKTGEIAVDGVLLVSGLC 541
Cdd:cd06263  80 HMYGSGVGTLNVYVREEGgglGTLLWSASGGQGNQWQEAEVTLSASSKPFQ-VVFEGVRGSGSRGDIALDDISLSPGPC 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
399-542 9.74e-22

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 92.04  E-value: 9.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563    399 CSFDLG-VCDWKQDREDDFDWH-----------PAD--RDNDVGYYMAVPALAGHKKNIGRL--KLLLPNLTPQsnfCLL 462
Cdd:pfam00629   1 CDFEDGnLCGWTQDSSDDFDWErvsgpsvktgpSSDhtQGTGSGHFMYVDTSSGAPGQTARLlsPLLPPSRSPQ---CLR 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563    463 FDYRLAGDKVGKLRVFVK---NSNNALAWEETKNEDGRWRTGKIQLYQGIDTTKsVIFEAERGKGKTGEIAVDGVLLVSG 539
Cdd:pfam00629  78 FWYHMSGSGVGTLRVYVRengGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQ-VVFEGIRGGGSRGGIALDDISLSSG 156

                  ...
gi 9506563    540 LCP 542
Cdd:pfam00629 157 PCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
399-541 7.17e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 83.93  E-value: 7.17e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563     399 CSFDLG-VCDWKQDREDDFDWH-----------PADRDNDVGYYMAVPALAGHKKNIGRLklLLPNLTPQ-SNFCLLFDY 465
Cdd:smart00137   6 CDFEEGsTCGWHQDSNDDGHWErvssatgipgpNRDHTTGNGHFMFFETSSGAEGQTARL--LSPPLYENrSTHCLTFWY 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506563     466 RLAGDKVGKLRVFVKNSNNALA---WEETKNEDGRWRTGKI------QLYQgidttksVIFEAERGKGKTGEIAVDGVLL 536
Cdd:smart00137  84 YMYGSGSGTLNVYVRENNGSQDtllWSRSGTQGGQWLQAEValsswpQPFQ-------VVFEGTRGKGHSGYIALDDILL 156

                   ....*
gi 9506563     537 VSGLC 541
Cdd:smart00137 157 SNGPC 161
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
221-256 9.62e-12

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 59.53  E-value: 9.62e-12
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 9506563    221 CALNTHPCSPHANCLNTRGSFKCKCKQGYRGNGLQC 256
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
217-256 2.83e-08

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 49.55  E-value: 2.83e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 9506563     217 DINECALNtHPCSPHANCLNTRGSFKCKCKQGYRgNGLQC 256
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT-DGRNC 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
217-251 4.05e-08

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 49.17  E-value: 4.05e-08
                        10        20        30
                ....*....|....*....|....*....|....*
gi 9506563  217 DINECALNtHPCSPHANCLNTRGSFKCKCKQGYRG 251
Cdd:cd00054   1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34
EGF_CA pfam07645
Calcium-binding EGF domain;
172-200 5.90e-07

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.69  E-value: 5.90e-07
                          10        20
                  ....*....|....*....|....*....
gi 9506563    172 DIDECASSKAVCPSNRRCVNTFGSYYCKC 200
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRC 29
EGF_CA pfam07645
Calcium-binding EGF domain;
217-248 6.07e-07

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.69  E-value: 6.07e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 9506563    217 DINECALNTHPCSPHANCLNTRGSFKCKCKQG 248
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
172-205 3.12e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.77  E-value: 3.12e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 9506563     172 DIDECASsKAVCPSNRRCVNTFGSYYCKCHIGFE 205
Cdd:smart00179   1 DIDECAS-GNPCQNGGTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
172-208 5.23e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.39  E-value: 5.23e-06
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 9506563  172 DIDECASSkAVCPSNRRCVNTFGSYYCKCHIGFELKY 208
Cdd:cd00054   1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
220-253 8.75e-05

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 39.77  E-value: 8.75e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 9506563  220 ECALNtHPCSPHANCLNTRGSFKCKCKQGYRGNG 253
Cdd:cd00053   1 ECAAS-NPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
EGF_CA smart00179
Calcium-binding EGF-like domain;
92-123 2.83e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 2.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 9506563      92 DVNECgVKPRPCQH--RCVNTHGSYKCFCLSGHM 123
Cdd:smart00179   1 DIDEC-ASGNPCQNggTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
92-124 5.78e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 37.62  E-value: 5.78e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 9506563   92 DVNECgVKPRPCQH--RCVNTHGSYKCFCLSGHML 124
Cdd:cd00054   1 DIDEC-ASGNPCQNggTCVNTVGSYRCSCPPGYTG 34
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
86-127 9.19e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 40.83  E-value: 9.19e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 9506563   86 GKTCtQDVNECGVKPRPCQHRCVNTHGSYKCFCLSGHMLLPD 127
Cdd:cd01475 181 GKIC-VVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLED 221
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
96-136 2.39e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 35.68  E-value: 2.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 9506563     96 CGVKPRPCQHRCVNTHGSYKCFCLSGHMLLPDatcsnSRTC 136
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDD-----GRTC 36
EGF_CA pfam07645
Calcium-binding EGF domain;
92-121 6.56e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 34.52  E-value: 6.56e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 9506563     92 DVNECGVKPRPCQHR--CVNTHGSYKCFCLSG 121
Cdd:pfam07645   1 DVDECATGTHNCPANtvCVNTIGSFECRCPDG 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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