NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|109150425|ref|NP_060559|]
View 

tRNA endonuclease ANKZF1 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
bVLRF1 pfam18826
Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging ...
 207-351 1.72e-69

Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome.


:

Pssm-ID: 465880  Cd Length: 143  Bit Score: 223.92  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425  207 CVVLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLAgpSWAK 286
Cdd:pfam18826   1 WALLMIGGGHFAGAVFSGGEVLAHKTFHRYTTRRKQGGSQSSNDNAKGKAKSAGASLRRYNEQALQEDIRELLS--EWKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109150425  287 ALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVYEE 351
Cdd:pfam18826  79 DIDKCELIFIRAPGSNRKILFGYEGAPLDKDDPRLRSIPFPTRRPTFSELKRVFSELTTVKVSHK 143
VATC pfam18716
Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but ...
 683-724 6.09e-20

Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but not all, Vms1/ANKZF1-like proteins.


:

Pssm-ID: 465846  Cd Length: 43  Bit Score: 83.13  E-value: 6.09e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 109150425  683 VNTRRCWSCGASLQGLTPFHYLDFSFCSTRCLQDHRRQAGRP 724
Cdd:pfam18716   1 KNYRRCWICGESLLGKVPFHKLDFSYCSTKCLRAHRRAGFAP 42
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
495-600 2.29e-11

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 65.36  E-value: 2.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 495 WNALLAACRAGDVGVLKLQLApSPADPRVLSllsaplgSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTV 574
Cdd:COG0666  154 NTPLHLAAANGNLEIVKLLLE-AGADVNARD-------NDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225

                         90       100
                 ....*....|....*....|....*.
gi 109150425 575 AADKSTRNEFRRFMEKNPDAYDYNKA 600
Cdd:COG0666  226 AAENGNLEIVKLLLEAGADLNAKDKD 251
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 69-103 3.16e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.69  E-value: 3.16e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 109150425    69 SEKLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQR 103
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
 
Name Accession Description Interval E-value
bVLRF1 pfam18826
Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging ...
 207-351 1.72e-69

Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome.


Pssm-ID: 465880  Cd Length: 143  Bit Score: 223.92  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425  207 CVVLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLAgpSWAK 286
Cdd:pfam18826   1 WALLMIGGGHFAGAVFSGGEVLAHKTFHRYTTRRKQGGSQSSNDNAKGKAKSAGASLRRYNEQALQEDIRELLS--EWKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109150425  287 ALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVYEE 351
Cdd:pfam18826  79 DIDKCELIFIRAPGSNRKILFGYEGAPLDKDDPRLRSIPFPTRRPTFSELKRVFSELTTVKVSHK 143
VATC pfam18716
Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but ...
 683-724 6.09e-20

Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but not all, Vms1/ANKZF1-like proteins.


Pssm-ID: 465846  Cd Length: 43  Bit Score: 83.13  E-value: 6.09e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 109150425  683 VNTRRCWSCGASLQGLTPFHYLDFSFCSTRCLQDHRRQAGRP 724
Cdd:pfam18716   1 KNYRRCWICGESLLGKVPFHKLDFSYCSTKCLRAHRRAGFAP 42
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
495-600 2.29e-11

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 65.36  E-value: 2.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 495 WNALLAACRAGDVGVLKLQLApSPADPRVLSllsaplgSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTV 574
Cdd:COG0666  154 NTPLHLAAANGNLEIVKLLLE-AGADVNARD-------NDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225

                         90       100
                 ....*....|....*....|....*.
gi 109150425 575 AADKSTRNEFRRFMEKNPDAYDYNKA 600
Cdd:COG0666  226 AAENGNLEIVKLLLEAGADLNAKDKD 251
Ank_2 pfam12796
Ankyrin repeats (3 copies);
495-565 1.89e-07

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 49.34  E-value: 1.89e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109150425  495 WNALLAACRAGDVGVLKLqlapspadprVLSLLSAPLGSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQD 565
Cdd:pfam12796  31 RTALHLAAKNGHLEIVKL----------LLEHADVNLKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD 91
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 535-607 3.34e-06

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 50.67  E-value: 3.34e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109150425 535 GFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAADKSTRNEFRRFMEKNPDAYDYNKAQVPGPLT 607
Cdd:PTZ00322 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFT 187
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 69-103 3.16e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.69  E-value: 3.16e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 109150425    69 SEKLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQR 103
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 535-563 4.00e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 35.26  E-value: 4.00e-03
                           10        20
                   ....*....|....*....|....*....
gi 109150425   535 GFTLLHAAAAAGRGSVVRLLLEAGADPTV 563
Cdd:smart00248   2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
 
Name Accession Description Interval E-value
bVLRF1 pfam18826
Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging ...
 207-351 1.72e-69

Bacteroidetes VLRF1 release factor; Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome.


Pssm-ID: 465880  Cd Length: 143  Bit Score: 223.92  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425  207 CVVLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLAgpSWAK 286
Cdd:pfam18826   1 WALLMIGGGHFAGAVFSGGEVLAHKTFHRYTTRRKQGGSQSSNDNAKGKAKSAGASLRRYNEQALQEDIRELLS--EWKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109150425  287 ALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVYEE 351
Cdd:pfam18826  79 DIDKCELIFIRAPGSNRKILFGYEGAPLDKDDPRLRSIPFPTRRPTFSELKRVFSELTTVKVSHK 143
VATC pfam18716
Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but ...
 683-724 6.09e-20

Vms1-associating treble clef domain; Treble clef fold domain found at C-terminus of many, but not all, Vms1/ANKZF1-like proteins.


Pssm-ID: 465846  Cd Length: 43  Bit Score: 83.13  E-value: 6.09e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 109150425  683 VNTRRCWSCGASLQGLTPFHYLDFSFCSTRCLQDHRRQAGRP 724
Cdd:pfam18716   1 KNYRRCWICGESLLGKVPFHKLDFSYCSTKCLRAHRRAGFAP 42
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
495-600 2.29e-11

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 65.36  E-value: 2.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 495 WNALLAACRAGDVGVLKLQLApSPADPRVLSllsaplgSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTV 574
Cdd:COG0666  154 NTPLHLAAANGNLEIVKLLLE-AGADVNARD-------NDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225

                         90       100
                 ....*....|....*....|....*.
gi 109150425 575 AADKSTRNEFRRFMEKNPDAYDYNKA 600
Cdd:COG0666  226 AAENGNLEIVKLLLEAGADLNAKDKD 251
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
493-578 3.97e-10

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 61.51  E-value: 3.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 493 ELWNALLAACRAGDVGVLKLQLApSPADPRVLSllsaplgSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPY 572
Cdd:COG0666   86 GGNTLLHAAARNGDLEIVKLLLE-AGADVNARD-------KDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPL 157


                 ....*.
gi 109150425 573 TVAADK 578
Cdd:COG0666  158 HLAAAN 163
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
495-578 1.46e-09

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 59.97  E-value: 1.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 495 WNALLAACRAGDVGVLKLQLApSPADPRVLsllsaplGSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTV 574
Cdd:COG0666  121 ETPLHLAAYNGNLEIVKLLLE-AGADVNAQ-------DNDGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHL 192


                 ....
gi 109150425 575 AADK 578
Cdd:COG0666  193 AAEN 196
Ank_2 pfam12796
Ankyrin repeats (3 copies);
495-565 1.89e-07

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 49.34  E-value: 1.89e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109150425  495 WNALLAACRAGDVGVLKLqlapspadprVLSLLSAPLGSGGFTLLHAAAAAGRGSVVRLLLEAGADPTVQD 565
Cdd:pfam12796  31 RTALHLAAKNGHLEIVKL----------LLEHADVNLKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD 91
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
474-612 1.63e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 50.34  E-value: 1.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109150425 474 AVAAPLGPLLDEAKAPGQPELWNALLAACRAGDVGVLKLQLAPSPADprvlsllsAPLGSGGFTLLHAAAAAGRGSVVRL 553
Cdd:COG0666   34 LLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADI--------NAKDDGGNTLLHAAARNGDLEIVKL 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109150425 554 LLEAGADPTVQDSRARPPYTVAADKSTRNEFRRFMEK--NPDAYDYNKAqvpgplTPEMEA 612
Cdd:COG0666  106 LLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAgaDVNAQDNDGN------TPLHLA 160
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 535-607 3.34e-06

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 50.67  E-value: 3.34e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109150425 535 GFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAADKSTRNEFRRFMEKNPDAYDYNKAQVPGPLT 607
Cdd:PTZ00322 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFT 187
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 535-565 1.54e-05

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 42.28  E-value: 1.54e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 109150425  535 GFTLLHAAAA-AGRGSVVRLLLEAGADPTVQD 565
Cdd:pfam00023   2 GNTPLHLAAGrRGNLEIVKLLLSKGADVNARD 33
Ank_5 pfam13857
Ankyrin repeats (many copies);
534-575 3.47e-04

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 38.87  E-value: 3.47e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 109150425  534 GGFTLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVA 575
Cdd:pfam13857  15 EGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
Ank_2 pfam12796
Ankyrin repeats (3 copies);
498-556 6.57e-04

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 39.33  E-value: 6.57e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 109150425  498 LLAACRAGDVGVLKLqLAPSPADPRVLSLLsaplgsgGFTLLHAAAAAGRGSVVRLLLE 556
Cdd:pfam12796   1 LHLAAKNGNLELVKL-LLENGADANLQDKN-------GRTALHLAAKNGHLEIVKLLLE 51
Ank_2 pfam12796
Ankyrin repeats (3 copies);
539-612 2.43e-03

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 37.79  E-value: 2.43e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109150425  539 LHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAADKSTRNEFRRFMEK-NPDAYDYNKaqvpgplTPEMEA 612
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHaDVNLKDNGR-------TALHYA 68
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 69-103 3.16e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.69  E-value: 3.16e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 109150425    69 SEKLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQR 103
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
Ank_4 pfam13637
Ankyrin repeats (many copies);
495-555 3.31e-03

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 36.10  E-value: 3.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109150425  495 WNALLAACRAGDVGVLKLqLAPSPADPRVLSllsaplgSGGFTLLHAAAAAGRGSVVRLLL 555
Cdd:pfam13637   2 LTALHAAAASGHLELLRL-LLEKGADINAVD-------GNGETALHFAASNGNVEVLKLLL 54
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 535-563 4.00e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 35.26  E-value: 4.00e-03
                           10        20
                   ....*....|....*....|....*....
gi 109150425   535 GFTLLHAAAAAGRGSVVRLLLEAGADPTV 563
Cdd:smart00248   2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Ank_4 pfam13637
Ankyrin repeats (many copies);
537-576 4.53e-03

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 35.71  E-value: 4.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 109150425  537 TLLHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAA 576
Cdd:pfam13637   3 TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAA 42
Ank_3 pfam13606
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 535-561 5.33e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities.


Pssm-ID: 463933 [Multi-domain]  Cd Length: 30  Bit Score: 34.93  E-value: 5.33e-03
                          10        20
                  ....*....|....*....|....*..
gi 109150425  535 GFTLLHAAAAAGRGSVVRLLLEAGADP 561
Cdd:pfam13606   2 GNTPLHLAARNGRLEIVKLLLENGADI 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH