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Conserved domains on  [gi|21361693|ref|NP_060527|]
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sodium-dependent neutral amino acid transporter B(0)AT2 isoform 2 [Homo sapiens]

Protein Classification

SLC5/6 family protein( domain architecture ID 124)

SLC5/6 (solute carrier 5/6) family protein may function as a transporter

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SLC5-6-like_sbd super family cl00456
Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the ...
 61-263 1.99e-142

Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporters or solute sodium symporters), SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporters or Na+/Cl--dependent transporters), and nucleobase-cation-symport-1 (NCS1) transporters. SLC5s co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. SLC6s include Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin, dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. Members of this superfamily are important in human physiology and disease. They contain a functional core of 10 transmembrane helices (TMs): an inverted structural repeat, TMs1-5 and TMs6-10; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT.


The actual alignment was detected with superfamily member cd11522:

Pssm-ID: 444915 [Multi-domain]  Cd Length: 580  Bit Score: 412.78  E-value: 1.99e-142
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11522   1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11522  81 GGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSSISE 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILL 263
Cdd:cd11522 161 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKImyfSSLFPYVVLI 206
 
Name Accession Description Interval E-value
SLC6sbd_SBAT1 cd11522
Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain; SBAT1 (also ...
 61-263 1.99e-142

Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain; SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212091 [Multi-domain]  Cd Length: 580  Bit Score: 412.78  E-value: 1.99e-142
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11522   1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11522  81 GGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSSISE 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILL 263
Cdd:cd11522 161 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKImyfSSLFPYVVLI 206
SNF pfam00209
Sodium:neurotransmitter symporter family; These are twelve xTM-containing region transporters.
 61-264 4.04e-97

Sodium:neurotransmitter symporter family; These are twelve xTM-containing region transporters.


Pssm-ID: 395155 [Multi-domain]  Cd Length: 517  Bit Score: 294.97  E-value: 4.04e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693    61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:pfam00209   1 RETWSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIMLIFAGIPLFFLELALGQYTREGAIGVWRKICPLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvknaSHTFVEPEC-------------EQSSATTYYW 207
Cdd:pfam00209  81 KGIGYASMVIAFYIGIYYNVIIAWALYYLFSSFTTELPWASC------NNSWNTPNCteffsannttnslNKTSPVEEFW 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   208 YREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:pfam00209 155 ERKVLKLSDGIEDLGGLRWPLALCLLVAWVVVYFCIWKGVKSSGKVvyfTATFPYVVLLV 214
YocR COG0733
Na+-dependent transporter, SNF family [General function prediction only];
60-264 5.17e-37

Na+-dependent transporter, SNF family [General function prediction only];


Pssm-ID: 440497 [Multi-domain]  Cd Length: 444  Bit Score: 136.38  E-value: 5.17e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISP- 138
Cdd:COG0733   4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYVAGENGGGAFLLPYLLALLLIGIPLLIAEFAIGRRGRKSPVGAFRKLAPg 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 139 -KLGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQplpwdqcplvknashTFVEPECEQSSAttyyWYREALNIsss 217
Cdd:COG0733  84 kKWEWIGWLGVLGAFLILSYYSVVAGWVLAYLFKSLTG---------------AFGGLDAEDAGA----FFGAFLSS--- 141

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 21361693 218 isesgglNWKMTICLLAAWVMVCLAMIKGIQS----SGKVSMLEPFLILLI 264
Cdd:COG0733 142 -------PGEVLIWHLLFLLLTALIVARGVQKgiekASKILMPLLFVLLII 185
Na_transp NF037979
sodium-dependent transporter;
64-169 5.10e-06

sodium-dependent transporter;


Pssm-ID: 468298 [Multi-domain]  Cd Length: 417  Bit Score: 47.23  E-value: 5.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   64 WNSKLQYILAqvGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPlfFLELSVGQRIRRGSIGVWNYIS--PKLG 141
Cdd:NF037979   3 WTLYLIFLVA--GYAVGIGTFWLFPQFWLQYGLTGLVVYLIFLAVLTYLA--ILEAESTKKSRYYIVELYTKVArtPAMI 78

                         90       100
                 ....*....|....*....|....*...
gi 21361693  142 GIGFASCVVCYFVALYYNVIIGWSLFYF 169
Cdd:NF037979  79 LVLLMFLVIFLGVISYYTANGGLLLSPI 106
 
Name Accession Description Interval E-value
SLC6sbd_SBAT1 cd11522
Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain; SBAT1 (also ...
 61-263 1.99e-142

Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain; SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212091 [Multi-domain]  Cd Length: 580  Bit Score: 412.78  E-value: 1.99e-142
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11522   1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11522  81 GGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSSISE 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILL 263
Cdd:cd11522 161 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKImyfSSLFPYVVLI 206
SLC6sbd_NTT4-like cd11515
Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain; ...
 61-270 3.89e-141

Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain; This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271400 [Multi-domain]  Cd Length: 530  Bit Score: 407.79  E-value: 3.89e-141
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11515   1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPRL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11515  81 GGIGFASCVVCLFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISDSISE 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILL-ITISGFI 270
Cdd:cd11515 161 SGGLNWKMTICLLAAWVIVCLAMIKGIQSSGKImyfSSLFPYVVLIcFLIRALL 214
SLC6sbd-B0AT-like cd10332
System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding ...
 61-264 3.48e-121

System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain; This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271364  Cd Length: 531  Bit Score: 356.97  E-value: 3.48e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd10332   1 RPAWDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFLIPYFIMLILEGIPLFFLELAIGQRLRKGSIGVWNTISPYL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNasHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd10332  81 GGVGIASVVVSFLVALYYNVIIAWCFFYLFNSFQYPLPWSSCPTNGN--GTGYVEECAKSSPTQYFWYRTTLDISPSIDE 158

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd10332 159 SGGLNWWMTLCLLLAWIIVYLCMMKGIKSSGKVvyfTATFPYIVLII 205
SLC6sbd_NTT4 cd11521
Na(+)-dependent neurotransmitter transporter 4; solute-binding domain; NTT4 (also called XT1) ...
 61-263 3.61e-121

Na(+)-dependent neurotransmitter transporter 4; solute-binding domain; NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271403 [Multi-domain]  Cd Length: 589  Bit Score: 358.91  E-value: 3.61e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11521   1 RPAWNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11521  81 GGIGYASCLVCFFVGLYYNVIIGWSIFYFFKSFQYPLPWSECPVVRNGSVAVVEAECEKSSATTYFWYREALDISNSISE 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILL 263
Cdd:cd11521 161 SGGLNWKMTLCLLVAWSLVGMAMIKGIQSSGKVmyfSSLFPYVVLV 206
SNF pfam00209
Sodium:neurotransmitter symporter family; These are twelve xTM-containing region transporters.
 61-264 4.04e-97

Sodium:neurotransmitter symporter family; These are twelve xTM-containing region transporters.


Pssm-ID: 395155 [Multi-domain]  Cd Length: 517  Bit Score: 294.97  E-value: 4.04e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693    61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:pfam00209   1 RETWSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIMLIFAGIPLFFLELALGQYTREGAIGVWRKICPLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvknaSHTFVEPEC-------------EQSSATTYYW 207
Cdd:pfam00209  81 KGIGYASMVIAFYIGIYYNVIIAWALYYLFSSFTTELPWASC------NNSWNTPNCteffsannttnslNKTSPVEEFW 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   208 YREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:pfam00209 155 ERKVLKLSDGIEDLGGLRWPLALCLLVAWVVVYFCIWKGVKSSGKVvyfTATFPYVVLLV 214
SLC6sbd_NTT5 cd11502
Neurotransmitter transporter 5; solute-binding domain; Human NTT5 is encoded by the SLC6A16 ...
 61-263 5.14e-81

Neurotransmitter transporter 5; solute-binding domain; Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271392  Cd Length: 535  Bit Score: 253.89  E-value: 5.14e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11502   1 RPLWSKKTEYILAQVGFSVGLSSIWRFPYLWHHNGGGSFLLIYILMLFLVGIPLLFLEMAVGQRLRQGSIGVWKILSPWL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTfvEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11502  81 GGVGYSSFLVCFIVGLYNNVLNSWSLFYLSQSFQFPLPWEKCPLVKNSSDF--DPECARTTPSQYFWYRQTLKASDRIED 158

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGK---VSMLEPFLILL 263
Cdd:cd11502 159 GGVLVLSLTLSLFLAWCLLCVFMINGLKSTGKmlyVLVLLPYIILL 204
SLC6sbd_SIT1 cd11518
Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain; SIT1 (also ...
 58-264 2.40e-78

Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain; SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271401 [Multi-domain]  Cd Length: 576  Bit Score: 248.33  E-value: 2.40e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  58 EDERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYIS 137
Cdd:cd11518   1 EKTRPLWDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLELAVGQLMRQGSIGAWKSIS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 138 PKLGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLvkNASHTFVEPECEQSSATTYYWYREALNISSS 217
Cdd:cd11518  81 PYLGGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSNCPL--NSNHTAYNEECEKASPTQYFWYRKTLNISPS 158

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 21361693 218 ISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11518 159 ILENGGIQWELAVCLILAWLVVYLCILRGTESTGKVvyvTALIPYLVLLI 208
SLC6sbd_B0AT3 cd11517
glycine transporter, B0AT3; solute-binding domain; B0AT3 (also called Xtrp2, XT2) transports ...
 60-264 4.82e-78

glycine transporter, B0AT3; solute-binding domain; B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212086 [Multi-domain]  Cd Length: 576  Bit Score: 247.42  E-value: 4.82e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPK 139
Cdd:cd11517   1 ERPKWDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLELAIGQRLRKGSIGVWTTISPY 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 140 LGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNAShTFVEpECEQSSATTYYWYREALNISSSIS 219
Cdd:cd11517  81 LGGVGLGCVTVSFLVSLYYNTILAWVLWYFLNSFQHPLPWSSCPLDLNRT-GFVE-ECQGSTAVSYFWYRQTLNITPDIN 158

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 21361693 220 ESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGK---VSMLEPFLILLI 264
Cdd:cd11517 159 DSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKviyFTALFPYLVLTI 206
SLC6sbd_B0AT1 cd11516
Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain; B0AT1 (also ...
 61-276 2.60e-73

Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain; B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212085 [Multi-domain]  Cd Length: 581  Bit Score: 235.17  E-value: 2.60e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11516   1 RPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLvkNASHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11516  81 KGVGIASMCVSFLVSLYYNTIIAWVMWYFFNSFQEPLPWSQCPL--NENRTGYIPECAKSSPVDYFWYRETLNTSTSIDD 158

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSSGK---VSMLEPFLILLITISGFIPLSNSV 276
Cdd:cd11516 159 SGGIQWWMVLCLACAWGVLYVCTIRGIETTGKavyVTSTLPYLVLTIFLIRGLTLKGSV 217
SLC6sbd-TauT-like cd11496
Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding ...
 61-264 1.63e-63

Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain; This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271387  Cd Length: 543  Bit Score: 208.59  E-value: 1.63e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11496   1 RGKWSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLETSLGQYTSQGGITAWK-ICPLF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPW---------DQCPLVKNASHTFVEPECEQSSATTY-----Y 206
Cdd:cd11496  80 KGIGYASAVIVFWLNIYYIVILAWALFYLFNSFTSPLPWttcdnwwntECCVEFYSNNNLSNSRENASNNTNATspveeF 159

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21361693 207 WYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11496 160 WERRVLGISDGIDEIGSIRWELVLCLLLAWVIVYFCIWKGVKSTGKVvyfTATFPYVMLII 220
SLC6sbd_SERT-like cd11497
Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; ...
 61-264 1.44e-62

Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain; This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271388  Cd Length: 537  Bit Score: 206.01  E-value: 1.44e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11497   1 RETWGKKIDFLLSVIGFAVDLGNVWRFPYLCYKNGGGAFLIPYLIMLIFGGLPLFYMELALGQFNRSGCITVWKKICPLF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPW---------DQCPLVKNASHTFVEPECEQSSATTYYWYREA 211
Cdd:cd11497  81 KGVGYAICIIAFYVAFYYNVIIAWALYYLFSSFTSELPWtscnnpwntPNCTDVSNRNNSSSINGTGLTSPAEEYFERKV 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 21361693 212 L--NISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11497 161 LelQKSEGIDDLGPIKWQLALCLFAVFIIVYFSLWKGVKSSGKVvwvTATMPYVVLSI 218
SLC6sbd cd10324
Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; This family ...
 64-264 2.36e-60

Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.


Pssm-ID: 271359 [Multi-domain]  Cd Length: 415  Bit Score: 196.98  E-value: 2.36e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  64 WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGI 143
Cdd:cd10324   3 WGSKLEFLLSCIGYAVGLGNIWRFPYLAYENGGGAFLIPYLIMLFLVGIPLFYLELALGQYTSRGPVGAFWRIAPLFKGV 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 144 GFASCVVCYFVALYYNVIIGWSLFYFSQSFqqplpwdqcplvknashtfvepeceqssattyywyrealnisssisesgg 223
Cdd:cd10324  83 GYAQVLVSFLVAIYYNVIIAWTLYYLFASF-------------------------------------------------- 112

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 21361693 224 LNWKMTICLLAAWVMVCLamIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd10324 113 INWELFLCLLLAWILVYL--CKGVKSIGKGvkfTGPFPYVLLLF 154
SLC6sbd_PROT cd11500
Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain; PROT is a ...
 61-266 2.04e-55

Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain; PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271390  Cd Length: 541  Bit Score: 187.27  E-value: 2.04e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11500   1 RGQWGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELSLGQYGSLGPLTVWK-CCPIF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvKNASHTFVEPECEQSSATTY-----------YWYR 209
Cdd:cd11500  80 KGIGYGMLLVSGLVCIYYNVIIAWTLFYLFASFTSVLPWEHC---GNWWNTESCLEHRGNGALTVnltrtvspseeYWNR 156

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21361693 210 EALNISSSISESG--GLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLITI 266
Cdd:cd11500 157 RVLGIQGSSGIGDpgEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTatfPYIILIVLL 218
SLC6sbd_CT1 cd11509
Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain; CT1 (also called ...
 61-264 6.41e-55

Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain; CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271397  Cd Length: 589  Bit Score: 186.98  E-value: 6.41e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11509   1 RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIAFVGGIPIFFLEIALGQFMKAGGINAWN-IAPLF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPW------------------DQCPLVKNASHTFVEPECEQS-- 200
Cdd:cd11509  80 KGLGYASMVIVFFCNTYYIMVLAWGFYYLVKSFTNTLPWatcgnpwntpncteifrhADCNNGASSAGSLANLTCDELan 159

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21361693 201 --SATTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11509 160 rrSPVIEFWERKVLRLSGGLEEPGALNWELTLCLLATWVLVYFCVWKGVKSTGKVvyfTATFPYVVLVV 228
SLC6sbd_BGT1 cd11511
Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding ...
 60-264 9.93e-53

Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain; BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212080  Cd Length: 541  Bit Score: 180.12  E-value: 9.93e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPK 139
Cdd:cd11511   1 ERGQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLETALGQYTSQGGVTAWRKICPI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 140 LGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTF----------VEPECEQSSATTYYWYR 209
Cdd:cd11511  81 FEGIGYASQVIESYLNVYYIIILSWALFYLFSSFTSVLPWATCNNPWNSDLCVdflnhsgadnRTPPENATSPVMEFWEK 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 21361693 210 EALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLI 264
Cdd:cd11511 161 RVLGLTDGIHKLGTVRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTatfPYLMLVI 218
SLC6sbd_SERT-like_u1 cd11556
uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter ...
 61-264 4.82e-52

uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain; SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized.


Pssm-ID: 271405  Cd Length: 552  Bit Score: 178.43  E-value: 4.82e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11556   1 RETWSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELALGQYNRKGAITSWGRLCPLF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQC-----------PLVKNASHTFVEPECEQSSATTYYWYR 209
Cdd:cd11556  81 KGIGYAVVLIAFYVDFFYNVIIAWSLYYFFASFTFNLPWTSCnnswntpncreFHWSEDGTVPCRSANQSFSAENQSAQS 160

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21361693 210 E---------------ALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11556 161 EnftsaaseyfergvlELNRSEGVHDLGNIRWDIALCLFAVYLICYFSLWKGIHTSGKVvwfTALFPYVVLFI 233
SLC6sbd_GAT1 cd11506
Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain; GAT1 transports ...
 24-264 7.66e-51

Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain; GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212075 [Multi-domain]  Cd Length: 598  Bit Score: 176.32  E-value: 7.66e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  24 LSNEDAADDAFKTseLIVDGQEEKDTDVEegsevedeRPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPY 103
Cdd:cd11506  16 VSEAPIANDKPKT--LVVKVQKKKTDLPD--------RDTWKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPY 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 104 LILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKLGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCP 183
Cdd:cd11506  86 FLTLIFAGVPLFLLECSLGQYTSIGGLGVWK-LAPMFKGVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWKSCD 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 184 LVKNASHTF----VEPECEQSSATTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SML 256
Cdd:cd11506 165 NPWNTDRCFsnysMANTTNMTSAVVEFWERNMHQMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVvyfSAT 244


                ....*...
gi 21361693 257 EPFLILLI 264
Cdd:cd11506 245 YPYIMLFI 252
SLC6sbd_TauT cd11510
Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain; TauT is a Na(+)- and Cl ...
 61-264 1.58e-50

Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain; TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271398  Cd Length: 542  Bit Score: 174.27  E-value: 1.58e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11510   1 REKWASKIDFLLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQC------------PLVKNASHTFVEPECEQSSATTYYWY 208
Cdd:cd11510  81 TGIGYASIVIVSLLNIYYIVILAWALYYLFQSFQSELPWAHCnqkwntpccvedTLRKNKTLWASINATNFTSPVTEFWE 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 21361693 209 REALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLI 264
Cdd:cd11510 161 RNVLSLSAGIEHVGTIKWDLALCLLLVWVVCFFCIWKGVKSTGKVVYFTatfPFLMLIV 219
SLC6sbd_GAT2 cd11507
Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain; This family includes ...
 61-266 1.81e-49

Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain; This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271396  Cd Length: 544  Bit Score: 171.70  E-value: 1.81e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11507   1 RGQWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTAWRKICPLF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASH---------TFVEPECEQSSATTYYWYREA 211
Cdd:cd11507  81 EGIGYASQVIVMLLNCYYIIVLAWALFYLFSSFTIDLPWGSCGHEWNTENcmefqkansTLNVTSENATSPVIEFWERRV 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 21361693 212 LNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLITI 266
Cdd:cd11507 161 LKISDGIQHLGSLRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTatfPYLMLVVLL 218
SLC6sbd_ATB0 cd11501
Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain; ATB0+ (also ...
 61-264 9.52e-49

Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain; ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271391  Cd Length: 602  Bit Score: 170.45  E-value: 9.52e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11501   1 RGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFMECSLGQFASLGPISVWR-ILPLF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCP--LVKNASHTFVEPECEQSSA---------------- 202
Cdd:cd11501  80 QGVGITMVLISTFVAIYYNVIIAYSLYYLFASFQSELPWSDCFswADENCSKTPIVTHCNVSTAnngihenkswvdinnl 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 203 ---------------TTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKV---SMLEPFLILLI 264
Cdd:cd11501 160 tcingsiiyqpgqlpSEQYWNKVALQRSSGMDETGVIVWYLALCLLLSWIIVGAALFKGIKSSGKVvyfTALFPYVVLLI 239
SLC6sbd_GlyT2 cd11499
Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain; GlyT2 (also ...
 61-266 1.76e-46

Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain; GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271389  Cd Length: 597  Bit Score: 164.41  E-value: 1.76e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYIsPKL 140
Cdd:cd11499   1 RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLIMLALAGLPIFLLEVSLGQFASQGPVSVWKAI-PAL 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvKNASHTfvePECEQS-------------------- 200
Cdd:cd11499  80 QGCGIAMLIISVLIAIYYNIIMCYTLFYLFASLVEVLPWASC---NNPWNT---PECKDKdmllldsciisdrpiiqikn 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 201 -------------------------SATTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSM 255
Cdd:cd11499 154 stfcmtaypnvtmvnftsvdnktfvSGSEEYFKYNVLKISAGIEYPGEIRWPLAACLFLAWLIVYASLAKGIKTSGKVVY 233

                       250
                ....*....|....
gi 21361693 256 LE---PFLILLITI 266
Cdd:cd11499 234 FTatfPYVVLVILL 247
SLC6sbd_GAT3 cd11508
Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain; This family includes ...
 60-266 1.91e-46

Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain; This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family


Pssm-ID: 212077  Cd Length: 542  Bit Score: 163.62  E-value: 1.91e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPK 139
Cdd:cd11508   1 ERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRKVCPL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 140 LGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPL--------------VKNASHTFVEpecEQSSATTY 205
Cdd:cd11508  81 FEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTTELPWATCGHewntencvefqklnSSNCSHVSLQ---NATSPVME 157

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21361693 206 YWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLITI 266
Cdd:cd11508 158 FWERRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTatfPYIMLLILL 221
SLC6sbd_GlyT1 cd11498
Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain; GlyT1 is a ...
 60-277 2.08e-46

Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain; GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212067  Cd Length: 585  Bit Score: 163.93  E-value: 2.08e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPK 139
Cdd:cd11498  16 KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWR-VSPM 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 140 LGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKN------------ASHTFVEPEC---------- 197
Cdd:cd11498  95 FKGVGYGMMVVSTYIGIYYNVVICIAFYYFFMSMTRVLPWTYCNNPWNtpdcagvlstnrSNATFANMSAvvsnltelln 174

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 198 ---EQSSATTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLITISGFIP 271
Cdd:cd11498 175 rtlKRTSPSEEYWRRYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTatfPYVVLTILFIRGIT 254


                ....*.
gi 21361693 272 LSNSVT 277
Cdd:cd11498 255 LEGAIS 260
SLC6sbd_NET cd11512
Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain; NET (also ...
 61-266 4.10e-46

Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain; NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212081  Cd Length: 560  Bit Score: 162.82  E-value: 4.10e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11512   1 RETWGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQYNREGAATVWK-ICPCF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvknaSHTFVEPECEQ---------SSATTYYWYREA 211
Cdd:cd11512  80 KGVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTSELPWTTC------GNVWNSPNCTDpkllnasvlGNGTKYSKYKLT 153

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 212 ------------LNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLITI 266
Cdd:cd11512 154 paaefyergvlhLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITatlPYVVLFVLL 223
SLC6sbd_SERT cd11513
Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain; SERT (also ...
 61-264 8.58e-46

Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain; SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 271399  Cd Length: 537  Bit Score: 161.53  E-value: 8.58e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd11513   1 RETWGKKMDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLIPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTY-------YWYREALN 213
Cdd:cd11513  81 KGIGYAICIIALYVASYYNTIIAWALYYLYSSFTDELPWTSCNNSWNTGNCTNYFAKDNITWTLHstspaeeFYTRHVLQ 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21361693 214 ISSSI--SESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLILLI 264
Cdd:cd11513 161 VHRSKglGDLGGISWQLTLCLFLIFTIVYFSIWKGVKTSGKVVWVTatfPYIVLFI 216
SLC6sbd_DAT1 cd11514
Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain; DAT1 (also called ...
 61-262 1.67e-45

Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain; DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.


Pssm-ID: 212083  Cd Length: 555  Bit Score: 161.25  E-value: 1.67e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNyISPKL 140
Cdd:cd11514   1 RETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELALGQFNREGAAGVWK-ICPIF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCplvknaSHTFVEPECEQSSATTYYWYREALNISSSISE 220
Cdd:cd11514  80 KGVGFTVILISLYVGFFYNVIIAWALFYLFSSFTGELPWIHC------NNSWNSPNCSDAHPGDSSGDSSGLNDTYKTTP 153

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21361693 221 SGGL--------------------NWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLE---PFLIL 262
Cdd:cd11514 154 AAEYfergvlhlheshgihdlgppRWQLTSCLVVVIVLLYFSLWKGVKTSGKVVWITatmPYVVL 218
SLC6sbd_u1 cd10334
uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain; SLC6 ...
 61-266 3.97e-45

uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain; SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.


Pssm-ID: 271366 [Multi-domain]  Cd Length: 480  Bit Score: 158.81  E-value: 3.97e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL 140
Cdd:cd10334   1 REQWGSRAGFILAAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGIPLLILEYGLGHKYRGSAPLAFRRLNKKF 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 141 GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQplPWdqcplvknashtfvepeceqSSATTYYWYREALNISSSISE 220
Cdd:cd10334  81 EWIGWWQVLVAFVIATYYAVIIAWALSYLFFSFTL--AW--------------------GDDPEAFFFGDFLQLSDSPFD 138

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 21361693 221 SGGLNWKMTICLLAAWVMVCLAMIKGIQSS-GKVSM-LEPFLILLITI 266
Cdd:cd10334 139 LGGIVWPILIALVLVWLIIWFILYRGVKKGiEKASKiFMPLLFVLFLI 186
YocR COG0733
Na+-dependent transporter, SNF family [General function prediction only];
60-264 5.17e-37

Na+-dependent transporter, SNF family [General function prediction only];


Pssm-ID: 440497 [Multi-domain]  Cd Length: 444  Bit Score: 136.38  E-value: 5.17e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  60 ERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISP- 138
Cdd:COG0733   4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYVAGENGGGAFLLPYLLALLLIGIPLLIAEFAIGRRGRKSPVGAFRKLAPg 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 139 -KLGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQplpwdqcplvknashTFVEPECEQSSAttyyWYREALNIsss 217
Cdd:COG0733  84 kKWEWIGWLGVLGAFLILSYYSVVAGWVLAYLFKSLTG---------------AFGGLDAEDAGA----FFGAFLSS--- 141

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 21361693 218 isesgglNWKMTICLLAAWVMVCLAMIKGIQS----SGKVSMLEPFLILLI 264
Cdd:COG0733 142 -------PGEVLIWHLLFLLLTALIVARGVQKgiekASKILMPLLFVLLII 185
SLC6sbd_u2 cd11554
uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain; SLC6 proteins ...
 62-173 5.31e-34

uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain; SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.


Pssm-ID: 212092 [Multi-domain]  Cd Length: 406  Bit Score: 127.43  E-value: 5.31e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  62 PAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLG 141
Cdd:cd11554   1 DQWGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQAYRGGCVKAFNLINRRAK 80

                        90       100       110
                ....*....|....*....|....*....|..
gi 21361693 142 GIGFASCVVCYFVALYYNVIIGWSLFYFSQSF 173
Cdd:cd11554  81 GVGAAVVFGGFVVCTYYVPILAWIMVYFRHSF 112
SLC6sbd_Tyt1-Like cd10336
solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain; SLC6 ...
 64-173 1.06e-31

solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain; SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.


Pssm-ID: 271367 [Multi-domain]  Cd Length: 440  Bit Score: 121.78  E-value: 1.06e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  64 WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGG- 142
Cdd:cd10336   3 WSSRLGFILAAAGSAVGLGNIWRFPYLAGENGGGAFLLVYLLFVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLAGGGKKw 82

                        90       100       110
                ....*....|....*....|....*....|...
gi 21361693 143 --IGFASCVVCYFVALYYNVIIGWSLFYFSQSF 173
Cdd:cd10336  83 klIGWLGVLGGFLILSFYSVVGGWVLKYLFKSL 115
LeuT-like_sbd cd10333
Aquifex aeolicus LeuT and related proteins; solute binding domain; LeuT is a bacterial amino ...
 61-266 7.39e-22

Aquifex aeolicus LeuT and related proteins; solute binding domain; LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12.


Pssm-ID: 271365 [Multi-domain]  Cd Length: 496  Bit Score: 94.69  E-value: 7.39e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  61 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQ---------------RI 125
Cdd:cd10333   1 REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQNGGGAFMIPYFIAFLLLGIPLMWIEWAMGRyggkyghgttpmiflLA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693 126 RRGSIGVWnyispkLGGIGFASCVVcyfVALYYNVIIGWSLFYFSQSFQQPLPwDQCPLVKNASHTFVEPECEQSSATTY 205
Cdd:cd10333  81 WENRFAKI------LGAIGLAIPLL---VNSYYVYIESWTLGYAFKSLTGAYP-EPPSILRPTAEFFYSYIGKPSGLAYI 150

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21361693 206 YWYrealnisssisesgglnwkmtICLLAAWVMVCLAMIKGIQSSGKVSMlePFLILLITI 266
Cdd:cd10333 151 FFL---------------------ITMALNFFILYRGVSKGIEAFAKIAM--PLLYVFAII 188
SLC5-6-like_sbd cd06857
Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the ...
 70-169 4.49e-16

Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporters or solute sodium symporters), SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporters or Na+/Cl--dependent transporters), and nucleobase-cation-symport-1 (NCS1) transporters. SLC5s co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. SLC6s include Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin, dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. Members of this superfamily are important in human physiology and disease. They contain a functional core of 10 transmembrane helices (TMs): an inverted structural repeat, TMs1-5 and TMs6-10; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT.


Pssm-ID: 271356 [Multi-domain]  Cd Length: 407  Bit Score: 77.40  E-value: 4.49e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693  70 YILAQVGFSVGLGNVWRFPYLCQKNGGGaYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWnYISPKLGGIGFASCV 149
Cdd:cd06857   3 LILACIGLALGLANFIRFPQMTYSYGGA-FILPYIVLSIIVGIPLLVLELSMGQFSGIGFISMW-RCSPFFKGLGVVSLF 80

                        90       100
                ....*....|....*....|
gi 21361693 150 VCYFVALYYNVIIGWSLFYF 169
Cdd:cd06857  81 LSFLLLIYYTYLAALALVYI 100
Na_transp NF037979
sodium-dependent transporter;
64-169 5.10e-06

sodium-dependent transporter;


Pssm-ID: 468298 [Multi-domain]  Cd Length: 417  Bit Score: 47.23  E-value: 5.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361693   64 WNSKLQYILAqvGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPlfFLELSVGQRIRRGSIGVWNYIS--PKLG 141
Cdd:NF037979   3 WTLYLIFLVA--GYAVGIGTFWLFPQFWLQYGLTGLVVYLIFLAVLTYLA--ILEAESTKKSRYYIVELYTKVArtPAMI 78

                         90       100
                 ....*....|....*....|....*...
gi 21361693  142 GIGFASCVVCYFVALYYNVIIGWSLFYF 169
Cdd:NF037979  79 LVLLMFLVIFLGVISYYTANGGLLLSPI 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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