|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
7-313 |
1.67e-23 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 103.46 E-value: 1.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 7 EESFQMWELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWRARA--DDELAALRVLVDQRWREKHEAEVQRDNL 84
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSlyEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 85 AEELESVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQAACT------ 158
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTqvnvem 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 159 --PRRPPAPAHASPIRApEVEELARR----LGEVWRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQAD 232
Cdd:pfam00038 161 daARKLDLTSALAEIRA-QYEEIAAKnreeAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 233 RDSLQERREALEQRLEGrwqdrlqATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENS 312
Cdd:pfam00038 240 KASLERQLAETEERYEL-------QLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEEC 312
|
.
gi 50363232 313 R 313
Cdd:pfam00038 313 R 313
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
574-1088 |
6.98e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 6.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 574 KSPEKEKQTPLKSLEEKNVEAE----KTLENGVLELSKPLGEEEPRMED-----QELMSPEHTLETVSFLGKENQEVVRS 644
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEeakkKAEEAKKADEAKKKAEEAKKADEakkkaEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 645 SEEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAedqvleRLIEKE 724
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA------KKAEEA 1592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 725 R-QESLKSPEEEDQQAFRLLEKENQEPLRFEdaedQVLERLIEKERQESLKSPEEEdqqafrllEKENQEPLRFEEAEDQ 803
Cdd:PTZ00121 1593 RiEEVMKLYEEEKKMKAEEAKKAEEAKIKAE----ELKKAEEEKKKVEQLKKKEAE--------EKKKAEELKKAEEENK 1660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 804 VlerlvekeSQESLKSPEEEDQRTGKPLEKENQESLRSldENQETIVLLESKNQRPLRSLEVEEEEQ-RIVKPLEKVSQV 882
Cdd:PTZ00121 1661 I--------KAAEEAKKAEEDKKKAEEAKKAEEDEKKA--AEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKI 1730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 883 SLESLEKENVQSPRYLEE---DDHMIKSLLEDKTHEILGSLEDRNGENFIPPENetqgslrpPEEEDQRIVNHLEKESQE 959
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEakkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE--------LDEEDEKRRMEVDKKIKD 1802
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 960 FLRSPEAEEEEeqvmvrsleGENHDPLSSVVKEEQMAESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQE 1039
Cdd:PTZ00121 1803 IFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 50363232 1040 EQKLEQETQQPLRAVEDEQMTVNPPEKVDPELPKPLRNDQEVVRSLDKE 1088
Cdd:PTZ00121 1874 KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKD 1922
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
17-315 |
1.11e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 17 RRLEAYLTRVKTLEEQNQLLSAELGGLRAQsgdaswRARADDELAALRVLVDQRwREKHEAEVQRDNLAEELESVAGRcq 96
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAE------LEELEAELAELEAELEEL-RLELEELELELEEAQAEEYELLA-- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 97 qvRLARERTIEEAACSRRALEAEKNARgwLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspirapEV 176
Cdd:COG1196 296 --ELARLEQDIARLEERRRELEERLEE--LEEELAELEEELEELEEELEELEEELEEAEE------------------EL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 177 EELARRLGEVwRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQDRLQ 256
Cdd:COG1196 354 EEAEAELAEA-EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 50363232 257 ATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQ 315
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-315 |
1.69e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQsgdaswRARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVAG 93
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAE------LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RcqqvRLARERTIEEAACSRRALEAEKNArgwLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspira 173
Cdd:COG1196 310 R----RRELEERLEELEEELAELEEELEE---LEEELEELEEELEEAEEELEEAEAELAEAEE----------------- 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 174 pEVEELARRLGEvWRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQD 253
Cdd:COG1196 366 -ALLEAEAELAE-AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50363232 254 RLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQ 315
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
488-878 |
7.08e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 488 QEEEGQIWELVKKeaATEVKVENSLAQEIQESGLDTEEIQDSQGPLQMETLEALGDEPLMS--LKTQNHETPGKENCNSS 565
Cdd:PTZ00121 1414 AAAKKKADEAKKK--AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdeAKKKAEEAKKADEAKKK 1491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 566 IEENSGTVKSPEKEKQTPLKSLEEKNVEAEKTLEngvlELSKplGEEEPRMEDQELMSPEHTLETVsflgKENQEVVRSS 645
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD----EAKK--AEEAKKADEAKKAEEKKKADEL----KKAEELKKAE 1561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 646 EEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKE--NQEPLRFEEAEDQVLERLIEK 723
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAkiKAEELKKAEEEKKKVEQLKKK 1641
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 724 ERQESLKSPE---EEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEA 800
Cdd:PTZ00121 1642 EAEEKKKAEElkkAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 801 EDQVLERlveKESQESLKSPEEEDQRTGKPLEKENQE--SLRSLDENQETIVLLESKNQRPLRSLEVEEEEQRIVKPLEK 878
Cdd:PTZ00121 1722 KKAEEEN---KIKAEEAKKEAEEDKKKAEEAKKDEEEkkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-297 |
5.76e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 5.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 17 RRLEAYLTRVKTLEEQNQLLSAELGGLRAqsgdasWRARADDELAALRVLVDQRWREKHEAEVQR--DNLAEELESVAGR 94
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEA------ELDALQERREALQRLAEYSWDEIDVASAEReiAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 95 CQQVRLARERtIEEAACSRRALEAEKNArgwLSTQAAELERELEALRASHEEERAHLNAqaactprrppAPAHASPIRAP 174
Cdd:COG4913 684 SDDLAALEEQ-LEELEAELEELEEELDE---LKGEIGRLEKELEQAEEELDELQDRLEA----------AEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 175 EVEELARRLG--EVWRGAVRDYQERVAHMESSLGQARERLGQAVRGA-RESRLEVQQLQADRDSLQERREALEQ------ 245
Cdd:COG4913 750 LLEERFAAALgdAVERELRENLEERIDALRARLNRAEEELERAMRAFnREWPAETADLDADLESLPEYLALLDRleedgl 829
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 50363232 246 -RLEGRWQDRLQATEkfqlavealEQEKQGLQSQIAQ-ILEGGQQLAHLKMSLS 297
Cdd:COG4913 830 pEYEERFKELLNENS---------IEFVADLLSKLRRaIREIKERIDPLNDSLK 874
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-248 |
1.26e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 17 RRLEAYLTRVKTLEEQNQLLS--AELGGLRAQSGDAswRARADDELAALRVLVDQRwrEKHEAEVQRDNLAEELESVAGR 94
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEpiRELAERYAAARER--LAELEYLRAALRLWFAQR--RLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 95 CQQVRLARERTIEEaacsRRALEAEKNARGWlsTQAAELERELEALRASHEE-ERAHLNAQAACTPRRPPAPAHASpira 173
Cdd:COG4913 311 LERLEARLDALREE----LDELEAQIRGNGG--DRLEQLEREIERLERELEErERRRARLEALLAALGLPLPASAE---- 380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 50363232 174 pEVEELARRLgevwrgavrdyQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLE 248
Cdd:COG4913 381 -EFAALRAEA-----------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
11-282 |
1.48e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 11 QMWELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWR-ARADDELAALRVLVDQRWREKHEAEVQRDNLAEELE 89
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 90 SVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALR---ASHEEERAHLNAQAACTPRRPPAPA 166
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeaANLRERLESLERRIAATERRLEDLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 167 HASPIRAPEVEELARRLGEVWRG------AVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERR 240
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELieelesELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 50363232 241 EALEQRLEGRWQDRLQ----ATEKFQLAVEALEQEKQGLQSQIAQI 282
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNlqerLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-315 |
9.58e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 9.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 101 ARERTIEEAACSRRALEAEKNArgwLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspirapEVEELA 180
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEE---LEAELEELEAELEELEAELAELEAELEELRL------------------ELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 181 RRLGEVwRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQDRLQATEK 260
Cdd:COG1196 281 LELEEA-QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 50363232 261 FQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQ 315
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-267 |
9.92e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 9.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELgglraqsgdaswrARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVAG 93
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERL-------------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNA-QAACTPRRPPAPAHASPIR 172
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERlEDRRERLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 173 APEVEELARRLGEVWRGAVrDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLE---- 248
Cdd:TIGR02168 432 EAELKELQAELEELEEELE-ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgvka 510
|
250 260 270
....*....|....*....|....*....|.
gi 50363232 249 ------------GRWQDRLQATEKFQLAVEA 267
Cdd:TIGR02168 511 llknqsglsgilGVLSELISVDEGYEAAIEA 541
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
92-1062 |
1.87e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 92 AGRCQQVRLARE-RTIEEAacsRRALEAEK--------NARGWLSTQAAELERELEALRASHEEERAHlNAQAACTPRRP 162
Cdd:PTZ00121 1127 ARKAEEARKAEDaRKAEEA---RKAEDAKRveiarkaeDARKAEEARKAEDAKKAEAARKAEEVRKAE-ELRKAEDARKA 1202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 163 PAPAHASPIRapEVEELARRLGEVWRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLevqqlqadrdSLQERREA 242
Cdd:PTZ00121 1203 EAARKAEEER--KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARM----------AHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 243 LEQRLEGRWQDRLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMslslevatyrtllEAENSRLQTPGRSSQ 322
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK-------------KAEEAKKKADAAKKK 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 323 AslgfpdpklklhflgipEDQHLGSVLPVLSPTSFSSPLPNTLETPVTAFLKTQEFLKArtptlastpippmSEAPYPKN 402
Cdd:PTZ00121 1338 A-----------------EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-------------ADAAKKKA 1387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 403 AEVRAQDVPHSLLQGGRQQAPEPLWAEATVPSSTGVLPELEEPGGEQpdhfpddptslapplnphhsilEAKDressesr 482
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD----------------------EAKK------- 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 483 vssifQEEEGQIWELVKKEAATEVKVENslAQEIQESGLDTEEiqdsqgplqmetlealgdeplmsLKTQNHETPGKENC 562
Cdd:PTZ00121 1439 -----KAEEAKKADEAKKKAEEAKKAEE--AKKKAEEAKKADE-----------------------AKKKAEEAKKADEA 1488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 563 NSSIEENSGTVKSPEKEKQTPLKSLEEKNVEAEKTLEngvlELSKPlgeEEPRMEDQelmspehtletvsflGKENQEVV 642
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD----EAKKA---EEAKKADE---------------AKKAEEKK 1546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 643 RSSEEQNLESLITFKEESQYPLGGPEAEDQ-MLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAedqvlerli 721
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKnMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE--------- 1617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 722 EKERQESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIekeRQESLKSPEEEDQQAFRLLEKENQEPLRFEEAE 801
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI---KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 802 DQVLErlvEKESQESLKSPEEEDQRTGKPLEKENQESLRSLDENQETivllESKNQRPLRSLEVEEEEQRIVKPLEKVSQ 881
Cdd:PTZ00121 1695 KKEAE---EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 882 VSLESLEKENVQSPRY-LEEDDHMIKSLLEDKTHEILGsledrNGENFIPPENETQGSLRPPEEEDQRIVNHLeKESQEF 960
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFD-----NFANIIEGGKEGNLVINDSKEMEDSAIKEV-ADSKNM 1841
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 961 LRSPEAEEEEEQVMVRSLEGENHDPLSSVVKEEQMAESKLEN-ESQDSRKSLED---ESQETFGSLEKENLESLRSLAGQ 1036
Cdd:PTZ00121 1842 QLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEiEEADEIEKIDKddiEREIPNNNMAGKNNDIIDDKLDK 1921
|
970 980
....*....|....*....|....*.
gi 50363232 1037 DQEEQKLEQETQQPLRAVEDEQMTVN 1062
Cdd:PTZ00121 1922 DEYIKRDAEETREEIIKISKKDMCIN 1947
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-311 |
5.04e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 50 ASWRARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVagrcqqvrlarERTIEEAACSRRALEAEKNArgwLSTQ 129
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----------ERRIAALARRIRALEQELAA---LEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 130 AAELERELEALRASHEEERAHLNAQAACTPRRPPAPAHASPIRAPEVEELARRLgevwrgavrdyqervaHMESSLGQAR 209
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL----------------QYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 210 ERLGQAVRGAREsrlEVQQLQADRDSLQERREALEQRLEGRWQDRLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQL 289
Cdd:COG4942 149 REQAEELRADLA---ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250 260
....*....|....*....|..
gi 50363232 290 AHLKMSLSLEVATYRTLLEAEN 311
Cdd:COG4942 226 EALIARLEAEAAAAAERTPAAG 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
10-250 |
7.05e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 10 FQMWELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQsgdaswRARADDELAALRVLVDQ-------RW-REKHEAEVQR 81
Cdd:COG4913 281 LRLWFAQRRLELLEAELEELRAELARLEAELERLEAR------LDALREELDELEAQIRGnggdrleQLeREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 82 DNLAEELESVAGRCQQVRLARERTIEE----AACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQAAc 157
Cdd:COG4913 355 EERERRRARLEALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 158 tpRRPPAPAHASPIRapevEELARRLG-------------------EVWRGAVrdyqERVAHmesslGQA---------- 208
Cdd:COG4913 434 --RKSNIPARLLALR----DALAEALGldeaelpfvgelievrpeeERWRGAI----ERVLG-----GFAltllvppehy 498
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 209 --------RERLGQAVR--GARESRLEVQQLQADRDSLQER--------REALEQRLEGR 250
Cdd:COG4913 499 aaalrwvnRLHLRGRLVyeRVRTGLPDPERPRLDPDSLAGKldfkphpfRAWLEAELGRR 558
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
611-1153 |
8.37e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 8.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 611 EEEPRMEDQELMSPEHTLETV---SFLGKENQEVVRSSEEQNLESLITFKEESQYPLGGPEA-----EDQMLERLVEKED 682
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikaeEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 683 QRFP---RSPEEDQQAfRPLEKENQEPLRFEEAEDQVLErliEKERQESLKSPEEEDQQAFRLLEKENQ----------- 748
Cdd:PTZ00121 1289 KKKAdeaKKAEEKKKA-DEAKKKAEEAKKADEAKKKAEE---AKKKADAAKKKAEEAKKAAEAAKAEAEaaadeaeaaee 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 749 ----EPLRFEDAE---DQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQESLKSPE 821
Cdd:PTZ00121 1365 kaeaAEKKKEEAKkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 822 EEDQRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVE---EEEQRIVKPLEKVSQVSLESLEKENVQSPRYL 898
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 899 EE---DDHMIKSLLEDKTHEILGSLEDRNGENFIPPENETQGSLRPPEEEDQR-------IVNHLEKESQEFLRSPEAEE 968
Cdd:PTZ00121 1525 DEakkAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmalrkaeEAKKAEEARIEEVMKLYEEE 1604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 969 EEEQVMVRSLEGENHDPLSSVVKEEQM---AESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQEEQKLEQ 1045
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEkkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 1046 ETQQplRAVEDEQMTVNPPEKVDpELPKPLRNDQEVVRSLDKENQEslvslNEGGMETVKSSETENIESLETVGECLGRR 1125
Cdd:PTZ00121 1685 EDEK--KAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEE-----NKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
570 580 590
....*....|....*....|....*....|.
gi 50363232 1126 KSV---DTQEPLWSTEVTSETIEPLEDETQE 1153
Cdd:PTZ00121 1757 KKIahlKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
14-323 |
1.63e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSgdASWRARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVAG 93
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFAALRAEA--AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RC----QQVRLARERTIEEAACSRRALE--------AEKNAR------GWLSTQAAEL----ERELEALRA-SHEEERAH 150
Cdd:COG4913 434 RKsnipARLLALRDALAEALGLDEAELPfvgelievRPEEERwrgaieRVLGGFALTLlvppEHYAAALRWvNRLHLRGR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 151 LNAQAACTPRRPPAPA-------------HASPIRAPEVEELARRL---------------------------GEVWRGA 190
Cdd:COG4913 514 LVYERVRTGLPDPERPrldpdslagkldfKPHPFRAWLEAELGRRFdyvcvdspeelrrhpraitragqvkgnGTRHEKD 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 191 VRDY-----------QERVAHMESSLGQARERLGQAVRgaresrlEVQQLQADRDSLQERREALEQRLEGRW-------- 251
Cdd:COG4913 594 DRRRirsryvlgfdnRAKLAALEAELAELEEELAEAEE-------RLEALEAELDALQERREALQRLAEYSWdeidvasa 666
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50363232 252 -------QDRLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQTPGRSSQA 323
Cdd:COG4913 667 ereiaelEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-310 |
2.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAyltrvktLEEQNQLLSAELggLRAQSGDASWRARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVAG 93
Cdd:COG1196 278 ELELELEE-------AQAEEYELLAEL--ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RCQQVRLARERTIEEAAcsrRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspira 173
Cdd:COG1196 349 AEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA----------------- 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 174 peVEELARRLGEVwRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQD 253
Cdd:COG1196 409 --EEALLERLERL-EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 50363232 254 RLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEV-ATYRTLLEAE 310
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYEAALEAA 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-316 |
2.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 59 ELAALRVLVDQRWREKHEAEVQRDNLAEELESVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELE 138
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 139 ALRASHEEERAHLNaqaactprrppapahaspIRAPEVEELARRLGEVwrgavrdyQERVAHMESSLGQARERLGQAVRG 218
Cdd:TIGR02168 758 ELEAEIEELEERLE------------------EAEEELAEAEAEIEEL--------EAQIEQLKEELKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 219 ARESRLEVQQLQADRDSLQERREALEQRLEgrwqDRLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSL 298
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250
....*....|....*...
gi 50363232 299 EVATYRTLLEAENSRLQT 316
Cdd:TIGR02168 888 ALALLRSELEELSEELRE 905
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
42-281 |
2.55e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 42 GLRAQSGDaswRARADDelaalRVLVDQRW------REKHEA-EVQRDNLAEELESVAGRCQQVRLARERTIEEAACSRR 114
Cdd:COG4913 581 GQVKGNGT---RHEKDD-----RRRIRSRYvlgfdnRAKLAAlEAELAELEEELAEAEERLEALEAELDALQERREALQR 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 115 ALEAEKNARGWLSTQA--AELERELEALRASHeeerahlnaqaactprrppapahaspiraPEVEELARRLGEVwrgavr 192
Cdd:COG4913 653 LAEYSWDEIDVASAEReiAELEAELERLDASS-----------------------------DDLAALEEQLEEL------ 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 193 dyqervahmESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQR--------LEGRWQdRLQATEKFQLA 264
Cdd:COG4913 698 ---------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralLEERFA-AALGDAVEREL 767
|
250
....*....|....*..
gi 50363232 265 VEALEQEKQGLQSQIAQ 281
Cdd:COG4913 768 RENLEERIDALRARLNR 784
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
668-906 |
3.28e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 668 EAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKE--NQEPLRFEEAEDQVLER--LIEKERQ---ESLKSPEEEDQQAF 740
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEarQREVRRLEEERAREMERvrLEEQERQqqvERLRQQEEERKRKK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 741 RLLEKENQEPLRFEDAEDQVLERLIEKERQESLkspeeEDQQAFRLLEKEnqeplrFEEAEDQVLERLVEKESQESLKSP 820
Cdd:pfam17380 477 LELEKEKRDRKRAEEQRRKILEKELEERKQAMI-----EEERKRKLLEKE------MEERQKAIYEEERRREAEEERRKQ 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 821 EEEDQRtgkpleKENQESLRSLDENQETIVLLEskNQRPLRSLEVEEEEQRivKPLEKVSQV-SLESLEKENVQSPRYLE 899
Cdd:pfam17380 546 QEMEER------RRIQEQMRKATEERSRLEAME--REREMMRQIVESEKAR--AEYEATTPItTIKPIYRPRISEYQPPD 615
|
....*..
gi 50363232 900 EDDHMIK 906
Cdd:pfam17380 616 VESHMIR 622
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-309 |
4.22e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWR-ARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVA 92
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEiEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 93 GRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspir 172
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS---------------- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 173 apEVEELARRLgEVWRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQ-----LQADRDSLQERREALEQRL 247
Cdd:TIGR02168 387 --KVAQLELQI-ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeleeLEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 50363232 248 EGRWQDRLQATEKFQLA-------------VEALEQEKQGLQSQIAQILEGGQQLAHLKMSLS--LEV-ATYRTLLEA 309
Cdd:TIGR02168 464 EELREELEEAEQALDAAerelaqlqarldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSelISVdEGYEAAIEA 541
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
708-1062 |
4.66e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 708 RFEEAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKEnqeplRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRll 787
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKE-----QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER-- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 788 EKENQEPLRFEEAEDQVLERLVEKESQESLKSPEEEDQRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVEE 867
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 868 EEQRIVKPLEKVSQVSLESLEKENvqsprylEEDDHMIKSLLEDKTHEILGSLEDRNGENFIPPENETQGSLRPPEEEDQ 947
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEK-------ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 948 RIVNHLEKESQEFLRSPEAEEEEEQVMVRSLegENHDPLSSVVKEEQmaESKLENESQDSRKSLEDESQEtfgSLEKENL 1027
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLK--EEKKEELEILEEEE--ESIELKQGKLTEEKEELEKQE---LKLLKDE 464
|
330 340 350
....*....|....*....|....*....|....*
gi 50363232 1028 ESLRSLAGQDQEEQKLEQETQQPLRAVEDEQMTVN 1062
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
14-281 |
6.03e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 6.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGdaswRARADDELAALRvlvdqrwrekheaevqRDNLAEELESVAG 93
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAG----LDDADAEAVEAR----------------REELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RCQQVRLARERTIEEAACSR-RALEAEKNARGwLSTQAAELERELEALRASHEEERAHLNAQAActprrppapahaspir 172
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLReDADDLEERAEE-LREEAAELESELEEAREAVEDRREEIEELEE---------------- 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 173 apEVEELARRLG--EVWRGAVRDYQE-----------RVAHMESSLGQARERL---------------GQAVRGA----- 219
Cdd:PRK02224 392 --EIEELRERFGdaPVDLGNAEDFLEelreerdelreREAELEATLRTARERVeeaealleagkcpecGQPVEGSphvet 469
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50363232 220 -RESRLEVQQLQADRDSLQERREALEQRLEgrwqdRLQATEKFQLAVEALEQEKQGLQSQIAQ 281
Cdd:PRK02224 470 iEEDRERVEELEAELEDLEEEVEEVEERLE-----RAEDLVEAEDRIERLEERREDLEELIAE 527
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-250 |
8.73e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 8.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASW-RARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVA 92
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 93 GRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQAACTPRRPPAPAHASPIR 172
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 173 APEVEELARRLGEVWRGAVRDYQERVAHMESSLGQARERLG---------QAVRGARESRLEVQQLQADRDSLQERREAL 243
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveaayEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
....*..
gi 50363232 244 EQRLEGR 250
Cdd:COG1196 567 KAAKAGR 573
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
7-318 |
1.68e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 7 EESFQMWELNRRLEAYLTRVKTLEEQNQLLSAELG----GLRAQS---------GDASWRARADDELAALRVLVDQRWRE 73
Cdd:COG3096 303 EEQYRLVEMARELEELSARESDLEQDYQAASDHLNlvqtALRQQEkieryqedlEELTERLEEQEEVVEEAAEQLAEAEA 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 74 -KHEAEVQRDNLA----------EELESVAGRCQQVRLARERTieEAACSRRALEAEkNARGWLSTQAAELE------RE 136
Cdd:COG3096 383 rLEAAEEEVDSLKsqladyqqalDVQQTRAIQYQQAVQALEKA--RALCGLPDLTPE-NAEDYLAAFRAKEQqateevLE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 137 LE-------ALRASHEE--------------ERAHLNAQAACtpRRPPAPAH----ASPIRA--PEVEELARRLGEVWR- 188
Cdd:COG3096 460 LEqklsvadAARRQFEKayelvckiageverSQAWQTARELL--RRYRSQQAlaqrLQQLRAqlAELEQRLRQQQNAERl 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 189 --------GAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQlqaDRDSLQERREALEQRlEGRWQDRLQATEK 260
Cdd:COG3096 538 leefcqriGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQ---QLEQLRARIKELAAR-APAWLAAQDALER 613
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 50363232 261 FQLAVEALEQEKQGLQSQIAQILEggqQLAHLKMSLSlEVATYRTLLEAENSRLQTPG 318
Cdd:COG3096 614 LREQSGEALADSQEVTAAMQQLLE---REREATVERD-ELAARKQALESQIERLSQPG 667
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
113-308 |
4.87e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 113 RRALEAEKnARGWLSTQAAELERELEALRASHEEERAHLNAQAActprrppaPAHASPIRApEVEELARRLGEVwRGAVR 192
Cdd:COG3206 168 LRREEARK-ALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDL--------SEEAKLLLQ-QLSELESQLAEA-RAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 193 DYQERVAHMESSLGQARERLGQAVRGARESRL--EVQQLQADRD--------------SLQERREALEQRLEGRWQDRLQ 256
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLraQLAELEAELAelsarytpnhpdviALRAQIAALRAQLQQEAQRILA 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 50363232 257 ATEK----FQLAVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLE 308
Cdd:COG3206 317 SLEAeleaLQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-315 |
1.64e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAyLTRVKTLEEQNQLLSAELGGLRAQSGDASWRaRADDELAALRVlvdqrwrEKHEAEVQRDNLAEELESVAG 93
Cdd:TIGR02168 197 ELERQLKS-LERQAEKAERYKELKAELRELELALLVLRLE-ELREELEELQE-------ELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 RCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEerahLNAQAACTPRRPPAPAHASPIRA 173
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE----LEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 174 PEVEELARRLGEVwRGAVRDYQERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQD 253
Cdd:TIGR02168 344 EKLEELKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50363232 254 RLQATEKFQlavealEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQ 315
Cdd:TIGR02168 423 IEELLKKLE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
14-248 |
2.69e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWR----ARADDELAALRVLVDQRWREKHEAEVQRDNLAEELE 89
Cdd:PRK02224 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleehEERREELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 90 SVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAhlNAQAActprRPPAPAHAS 169
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE--EAESL----REDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 170 piRAPEVEELARRLG---EVWRGAVRDYQERVAHMESSLGQARERLGQA--VRGARESRLEvqQLQADRDSLQERREALE 244
Cdd:PRK02224 357 --RAEELREEAAELEselEEAREAVEDRREEIEELEEEIEELRERFGDApvDLGNAEDFLE--ELREERDELREREAELE 432
|
....
gi 50363232 245 QRLE 248
Cdd:PRK02224 433 ATLR 436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
76-322 |
3.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 76 EAEVQRDNLAEELESVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEALRASHEEERAHLNAQA 155
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 156 actprrppapahaspirapevEELARRLGEVWRGAVRDYQERVAHMESSLgqarerlgQAVRGARESRLEVQQLQADRDS 235
Cdd:COG4942 104 ---------------------EELAELLRALYRLGRQPPLALLLSPEDFL--------DAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 236 LQERREALEQRlegrwqdrlqatekfqlaVEALEQEKQGLQSQIAQILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQ 315
Cdd:COG4942 155 LRADLAELAAL------------------RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
|
....*..
gi 50363232 316 TPGRSSQ 322
Cdd:COG4942 217 ELQQEAE 223
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
50-310 |
3.58e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 42.31 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 50 ASWRARADDELAALRVLVDQRWREKHEAEVQRDNLAEELESVAGRCQQVRLARERTIEEAACSRRALEAEknARGWLSTQ 129
Cdd:COG3903 565 RRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAA--AAAAAAAA 642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 130 AAELERELEALRASHEEERAHLNAQAACTPRRPPAPAHASpiRAPEVEELARRLGEVWRGAVRDYQERVAHMESSLGQAR 209
Cdd:COG3903 643 AAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAA--AAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAA 720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 210 ERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQDRLQATEKFQLAVEALEQEKQGLQSQIAQILEGGQQL 289
Cdd:COG3903 721 AAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAA 800
|
250 260
....*....|....*....|.
gi 50363232 290 AHLKMSLSLEVATYRTLLEAE 310
Cdd:COG3903 801 AAAAAAAAAAAAAAALAAAAA 821
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
14-248 |
4.99e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWRARADDELAALRVLVDQRwrekHEAEVQRDNLAEELESVag 93
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQL----AEARAELAEAEARLAAL-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 94 rcqQVRLARERTIEEAACSRRALEAeknargwLSTQAAELERELEALRASHeeerahlnaqaacTPRRPPAPAHASPIRA 173
Cdd:COG3206 246 ---RAQLGSGPDALPELLQSPVIQQ-------LRAQLAELEAELAELSARY-------------TPNHPDVIALRAQIAA 302
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 50363232 174 PEvEELARRLGEVWRGAVRDYQERVAHmESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLE 248
Cdd:COG3206 303 LR-AQLQQEAQRILASLEAELEALQAR-EASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
707-928 |
5.26e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 707 LRFEEAEDQVLERLIEKERQESLKSPEEEDQQAF-----RLLEKENQEPLRFEDAEDQVLERLIEKER-QESLKSPEEED 780
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELeerleELEEELAELEEELEELEEELEELEEELEEaEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 781 QQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQES-LKSPEEEDQRTgkpLEKENQESLRSLDENQETIVLLESKNQRP 859
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAeLAAQLEELEEA---EEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50363232 860 LRSLEVEEEEQRIVKPLEKVSQVSLESLEKENVQSPRYLEEDDHMIKSLLEDKTHEILGSLEDRNGENF 928
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
8-259 |
6.57e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 8 ESFQMWELNRRLEAYLTRVKTLEEQNQLLSAELGG-LRAQSGD-ASWRARADDELAALRVLVDQRWREKHEAEVQRDNLA 85
Cdd:pfam12128 274 IASRQEERQETSAELNQLLRTLDDQWKEKRDELNGeLSAADAAvAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 86 EELESVAGRcQQVRLARERTIEEAACSRRALEAEKNARGwLSTQAAELERELEALRASHEEERAHLnaQAACTPRRPPAP 165
Cdd:pfam12128 354 SELENLEER-LKALTGKHQDVTAKYNRRRSKIKEQNNRD-IAGIKDKLAKIREARDRQLAVAEDDL--QALESELREQLE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 166 AHASPIRAPEvEELARRLGEVwRGAVRDYQ------ERVAHMESSLGQARERLGQAVRGARESRLEVQQLQADRDSLQER 239
Cdd:pfam12128 430 AGKLEFNEEE-YRLKSRLGEL-KLRLNQATatpellLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEA 507
|
250 260
....*....|....*....|
gi 50363232 240 REALEQRLEGRwQDRLQATE 259
Cdd:pfam12128 508 LRQASRRLEER-QSALDELE 526
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
488-813 |
6.72e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 488 QEEEGQIWELVKKEAATEVKVENSLAQEIQESGLDTEEIQDSQGPLQMETLEALGDEPLMSLKTQNHETPGKENCNSSIE 567
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 568 ENSGTVKSPEKEKQTPLKSLEEKNvEAEKTLENGVLELSKPLGEEEPRMEDQELMSPEHTLETVSFLGKENQEVVRSSEE 647
Cdd:pfam02463 752 EEKSRLKKEEKEEEKSELSLKEKE-LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 648 QN--LESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAEDQvlerLIEKER 725
Cdd:pfam02463 831 KEeeLEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK----ELEEES 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 726 QESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQESLKSPEEED----QQAFRLLEKENQEP-LRFEEA 800
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERnkrlLLAKEELGKVNLMAiEEFEEK 986
|
330
....*....|...
gi 50363232 801 EDQVLERLVEKES 813
Cdd:pfam02463 987 EERYNKDELEKER 999
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
687-823 |
7.03e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 687 RSPEEDQQAFRPLEKENQEPLRFEEAEDQ-VLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQ--VLER 763
Cdd:PRK12705 30 RLAKEAERILQEAQKEAEEKLEAALLEAKeLLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLenQLEE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50363232 764 LIEKERQESLKSPEEEDQQAFRLLEKENQEPlrfEEAEDQVLERL---VEKESQESLKSPEEE 823
Cdd:PRK12705 110 REKALSARELELEELEKQLDNELYRVAGLTP---EQARKLLLKLLdaeLEEEKAQRVKKIEEE 169
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
14-268 |
7.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 14 ELNRRLEAYLT---------RVKTLEEQNQLLSAELGGLRAQSGD----ASWRARADDELAALRVLVDQRWREKHEAEVQ 80
Cdd:COG4913 642 ALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSDDlaalEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 81 RDNLAEELESVAGRCQQVRLARERTIEEAACSRRALEAEKNARgwlSTQAAELERELEALRASHEEERAHL-NAQAACTP 159
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVE---RELRENLEERIDALRARLNRAEEELeRAMRAFNR 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 160 RRPPAPAH--ASPIRAPEVEELARRLGEV--------WRGAVRDYQER-----VAHMESSLGQARERLG------QAVRG 218
Cdd:COG4913 799 EWPAETADldADLESLPEYLALLDRLEEDglpeyeerFKELLNENSIEfvadlLSKLRRAIREIKERIDplndslKRIPF 878
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 50363232 219 ARESRLevqQLQADRDSLQERRE---ALEQRLEGRWQDRLQATEKFQLAVEAL 268
Cdd:COG4913 879 GPGRYL---RLEARPRPDPEVREfrqELRAVTSGASLFDEELSEARFAALKRL 928
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
710-885 |
8.39e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 710 EEAE--DQVLERLIEKERQ--ESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLiEKERQESLKSPEEEDQQA-- 783
Cdd:PRK00409 513 EDKEklNELIASLEELEREleQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA-EKEAQQAIKEAKKEADEIik 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 784 -FRLLEKENQEPLRFEEAEDqVLERLVEK-ESQESLKSPEEEDQRTGKP-----LEKENQ--ESLrSLDENQETIVLLES 854
Cdd:PRK00409 592 eLRQLQKGGYASVKAHELIE-ARKRLNKAnEKKEKKKKKQKEKQEELKVgdevkYLSLGQkgEVL-SIPDDKEAIVQAGI 669
|
170 180 190
....*....|....*....|....*....|....*..
gi 50363232 855 KNQR-PLRSLEV-----EEEEQRIVKPLEKVSQVSLE 885
Cdd:PRK00409 670 MKMKvPLSDLEKiqkpkKKKKKKPKTVKPKPRTVSLE 706
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
552-737 |
8.45e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 41.31 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 552 QNHETPGKENCNSSIEEN--SGTVKSPEKEKQTPLKSLEEKNVE--AEKTLENGVLELSKPLGEEEPRMEDQElmSPEHT 627
Cdd:PTZ00341 953 ENVEEDAEENVEENVEENveENVEENVEENVEENVEENVEENVEenVEENIEENVEENVEENIEENVEEYDEE--NVEEV 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 628 LETVSFLGKENQEVVRSSEEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEpl 707
Cdd:PTZ00341 1031 EENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAE-- 1108
|
170 180 190
....*....|....*....|....*....|
gi 50363232 708 rfEEAEDQVLERLIEKERQESLKSPEEEDQ 737
Cdd:PTZ00341 1109 --ENAEENAEENAEEYDDENPEEHNEEYDE 1136
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
129-315 |
9.34e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 129 QAAELERE----LEALRASHEEERAHLNAQAACTPRRPPAPAHAspirapeveelARRLGEVWRGAVRDYQERVAHMESS 204
Cdd:COG4913 242 EALEDAREqielLEPIRELAERYAAARERLAELEYLRAALRLWF-----------AQRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50363232 205 LGQARERLGQAVRGARESRLEVQQLQADR-DSLQERREALEQRLEGRWQDRLQ---ATEKFQLAVEALEQEKQGLQSQIA 280
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARleaLLAALGLPLPASAEEFAALRAEAA 390
|
170 180 190
....*....|....*....|....*....|....*
gi 50363232 281 QILEGGQQLAHlkmslslEVATYRTLLEAENSRLQ 315
Cdd:COG4913 391 ALLEALEEELE-------ALEEALAEAEAALRDLR 418
|
|
| |
