|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-1166 |
4.82e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 4.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 354 KNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 431
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 432 ALKNELRKEREQiLQQAGKQRLELEQEIEKAKTEenyiRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV 511
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 512 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEh 591
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 592 glgseecnpLNMSIEAELVIEQMKEQHHRDICCLRLELeDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQ--I 669
Cdd:TIGR02168 449 ---------LEELQEELERLEEALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsgL 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 670 SDLKNEIAEL--------QGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE---KTHLQEkLRLQHEMELKARLTQAQASF 738
Cdd:TIGR02168 519 SGILGVLSELisvdegyeAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNelgRVTFLP-LDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 739 EREREGLQSSAWTEEKVRG--------------LTQELEQFHQ-EQLTSLVekhTLEKEELRKellekhqrelqEGRYES 803
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKlRPGYRIV---TLDGDLVRP-----------GGVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 804 EKLQQENSIL--RNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENT 881
Cdd:TIGR02168 664 GSAKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 882 ELSQKNSQNQEKLQELNQRLTEMLCQKEKEpgNSALEEREQEKFNLKEELERCKVQSSTL---VSSLEAELSEVKIQTHI 958
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEA--EEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 959 VQQENHLLKDELEKMKQLhrcpdLSDFQQKIssvlsynEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWE 1038
Cdd:TIGR02168 822 LRERLESLERRIAATERR-----LEDLEEQI-------EELSEDIESLAAEIEELEELIEE---LESELEALLNERASLE 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1039 HQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLqNAGGKSWAPEIATHPSGLHN 1118
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIED 965
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 291167747 1119 QQKRLSwDKLDHLMNEEQQL----------LWQENERLQTMvQNTKAELTHSREKVRQ 1166
Cdd:TIGR02168 966 DEEEAR-RRLKRLENKIKELgpvnlaaieeYEELKERYDFL-TAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-1097 |
5.01e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 5.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRK 439
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 440 EREQILqqagKQRLELEQEIEKAKTEENYIRDRLA--------LSLKENSRLENELLENAEKLAEYENLTNKLQRNLEnV 511
Cdd:TIGR02169 238 QKEAIE----RQLASLEEELEKLTEEISELEKRLEeieqlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-E 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 512 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLknspsEEVEANSGGIEPEH 591
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-----EEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 592 --------GLGsEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQ------- 656
Cdd:TIGR02169 388 kdyrekleKLK-REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlaadlsk 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 657 ------RHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ--VKLEEEKTHLQEKLRLQHEMELK 728
Cdd:TIGR02169 467 yeqelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEVAAG 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 729 ARLTQ---------------------AQASF----EREREGLQSSAWTEEKVRGLTQELEQFHQE---------QLTSLV 774
Cdd:TIGR02169 547 NRLNNvvveddavakeaiellkrrkaGRATFlplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTLVV 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 775 EKHTLEKEELRK--------ELLEKHQreLQEGRYESEKLQQENSI-LRNEITTLNEEdsisnlkLGTLNGSQEEMWQKT 845
Cdd:TIGR02169 627 EDIEAARRLMGKyrmvtlegELFEKSG--AMTGGSRAPRGGILFSRsEPAELQRLRER-------LEGLKRELSSLQSEL 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 846 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKF 925
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV--KSELKELEARIEELEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 926 NLKEELErckvqsstlvsSLEAELSEVKIQThivqqenhlLKDELEKMKQLHrcpdlSDFQQKISSVLSYNEKLLKEKEA 1005
Cdd:TIGR02169 776 KLEEALN-----------DLEARLSHSRIPE---------IQAELSKLEEEV-----SRIEARLREIEQKLNRLTLEKEY 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1006 LSEELNscvDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEA 1085
Cdd:TIGR02169 831 LEKEIQ---ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
|
810
....*....|..
gi 291167747 1086 LKQEVMSLHKQL 1097
Cdd:TIGR02169 908 LEAQIEKKRKRL 919
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
637-1350 |
2.53e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 637 EKQLDETvvsckkaQENMKQ----RHENETH--TLEKQIS------DLKNEIAELQGQAAVL-KEAHHEATCRHEEEKKQ 703
Cdd:TIGR02168 178 ERKLERT-------RENLDRlediLNELERQlkSLERQAEkaerykELKAELRELELALLVLrLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 704 LQVKLEEEKTHLQEKLrLQHEmELKARLTQAQASFEREREGLQSSAwteEKVRGLTQELeQFHQEQLTSLVEKhtlekEE 783
Cdd:TIGR02168 251 AEEELEELTAELQELE-EKLE-ELRLEVSELEEEIEELQKELYALA---NEISRLEQQK-QILRERLANLERQ-----LE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 784 LRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLK 863
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 864 KQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQkEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVS 943
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE-ELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 944 SLEAELSEVKIQTHIVQ--QENHLLKDELEKMKQLHRcPDLSDFQQKISSVLSYNEKLLKEKE-ALSEELNSCVD----- 1015
Cdd:TIGR02168 479 AAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQ-SGLSGILGVLSELISVDEGYEAAIEaALGGRLQAVVVenlna 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1016 -KLAKSSLLEHRI--ATMKQEQKSWEHQSASLKSQLVASQEKVQ----NLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQ 1088
Cdd:TIGR02168 558 aKKAIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLgvakDLVKFDPKLRKALSYLLGGVLVVDDLDNALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1089 EVMSLHKQ-LQNAGGKSWAPEIATHPSGLHNQQKRLSWDKldhlmneEQQLLWQENERLQTMVQNTKAELTHSREKVRQL 1167
Cdd:TIGR02168 638 AKKLRPGYrIVTLDGDLVRPGGVITGGSAKTNSSILERRR-------EIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1168 ESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVS----QMNSLEQELETIHLENEGLKKKQVKLDEQ 1243
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTeleaEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1244 LMEMQHLRSTATPSPSPHAWDLQLL------QQQACPMVPREQFLQLQRQLLQAERI--NQHLQEELENRTSETNTPQGN 1315
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLneeaanLRERLESLERRIAATERRLEDLEEQIeeLSEDIESLAAEIEELEELIEE 870
|
730 740 750
....*....|....*....|....*....|....*
gi 291167747 1316 QEQLVTVMEERMIEVEQKLKLVKRLLQEKVNQLKE 1350
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRE 905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1168 |
3.80e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 3.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 404 VDDHHAAIERrneyNLRKLDEEYK--ERIAALKNELRKEREQIL----QQAGKQRLELEQEIEKAKTEENYIRDRLALSL 477
Cdd:TIGR02168 191 LEDILNELER----QLKSLERQAEkaERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 478 KENSRLENELLENAEKLAEYE---NLTNKLQRNLEN---VLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQV 551
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQkelYALANEISRLEQqkqILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 552 DELQSELEEYRAQgrvlrlpLKNSPSEEVEANSGGIEPEHGLGSEEcnplnmsiEAELVIEQMKEQHHRDICCLRLELED 631
Cdd:TIGR02168 347 EELKEELESLEAE-------LEELEAELEELESRLEELEEQLETLR--------SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 632 KVRHYEKQLDETvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE 711
Cdd:TIGR02168 412 LEDRRERLQQEI-------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 712 KTHLQEKLRLQHEMELKARLTQAQASFERERE---GLQSSAWTEEKVR-GLTQELEQFHQEQLTSLVEK---------HT 778
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSglsGILGVLSELISVDeGYEAAIEAALGGRLQAVVVEnlnaakkaiAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 779 LEKEELRK----ELLEKHQRELQEGRYESEKLQQE-------------------NSILRNEITTLNEEDSISNLKL---- 831
Cdd:TIGR02168 565 LKQNELGRvtflPLDSIKGTEIQGNDREILKNIEGflgvakdlvkfdpklrkalSYLLGGVLVVDDLDNALELAKKlrpg 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 832 --------------GTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQEL 897
Cdd:TIGR02168 645 yrivtldgdlvrpgGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 898 NQRLTEMLCQKEKEPGNSalEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLH 977
Cdd:TIGR02168 725 SRQISALRKDLARLEAEV--EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 978 RcpDLSDFQQKISSVlsyNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQN 1057
Cdd:TIGR02168 803 E--ALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1058 LEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLswdkLDHLMNEEQQ 1137
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK--LAQLELRLEGLEVRIDNL----QERLSEEYSL 951
|
810 820 830
....*....|....*....|....*....|.
gi 291167747 1138 LLwqenERLQTMVQNTKAELTHSREKVRQLE 1168
Cdd:TIGR02168 952 TL----EEAEALENKIEDDEEEARRRLKRLE 978
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
490-1104 |
3.90e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.30 E-value: 3.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 490 NAEKLAEYENLTNKLQRNLENVLAEKFGDLDPS----SAEFFLQEERLTQMRNEYERQCRVL----QDQVDELQSELEEy 561
Cdd:pfam15921 200 SGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisylKGRIFPVEDQLEALKSESQNKIELLlqqhQDRIEQLISEHEV- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 562 raqgRVLRLPLKNSpSEEVEANSggIEPEHGLGSEECNPLNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQL 640
Cdd:pfam15921 279 ----EITGLTEKAS-SARSQANS--IQSQLEIIQEQARNQNSMYMRQLSdLESTVSQLRSELREAKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 641 ---DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAEL-----QGQAAVLKEAHHEATCRHeeekkqLQVKLEEEK 712
Cdd:pfam15921 352 vlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeQNKRLWDRDTGNSITIDH------LRRELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 713 THLQeklRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfHQEQLTSLVE-----KHTLEKEE---- 783
Cdd:pfam15921 426 MEVQ---RL--EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLES-TKEMLRKVVEeltakKMTLESSErtvs 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 784 -LRKELLEKhQRELQEGRYESEKLQQENSILRNEITTL-NEEDSISN---------LKLGTLNGSQEEMWQKTETVKQ-- 850
Cdd:pfam15921 500 dLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLkNEGDHLRNvqtecealkLQMAEKDKVIEILRQQIENMTQlv 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 851 ------------ENAAVQKMVENLKKQISELKI--------------KNQQLDLENTELSQKNSQNQEKLQELNQRLTEM 904
Cdd:pfam15921 579 gqhgrtagamqvEKAQLEKEINDRRLELQEFKIlkdkkdakireleaRVSDLELEKVKLVNAGSERLRAVKDIKQERDQL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 905 L--CQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQ----ENHLLKDELEKMKQL-H 977
Cdd:pfam15921 659 LneVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsDGHAMKVAMGMQKQItA 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 978 RCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNScvdklaksslLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQN 1057
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 291167747 1058 LEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKS 1104
Cdd:pfam15921 809 MEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTS 855
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-941 |
8.40e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 8.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRnEYNLRKLDEEYKERIAALKnelrk 439
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI-EAKINELEEEKEDKALEIK----- 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 440 EREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLA------ 513
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGtvaqlg 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 514 ---EKFG------------------DLDPSSAEFFLQEER--------LTQMRN---------------------EYERQ 543
Cdd:TIGR02169 532 svgERYAtaievaagnrlnnvvvedDAVAKEAIELLKRRKagratflpLNKMRDerrdlsilsedgvigfavdlvEFDPK 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 544 CR-----VLQDQVdeLQSELEEYRAQGRVLRL-PLKNSPSEEVEANSGGIEPEHGLGSeecNPLNMSIEAELVIEQMKEQ 617
Cdd:TIGR02169 612 YEpafkyVFGDTL--VVEDIEAARRLMGKYRMvTLEGELFEKSGAMTGGSRAPRGGIL---FSRSEPAELQRLRERLEGL 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 618 HHrdiccLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRhENETHTLEKQISDLKNEIAELQGQAAVLKEAhheatcrh 697
Cdd:TIGR02169 687 KR-----ELSSLQSELRRIENRLDELSQELSDASRKIGEI-EKEIEQLEQEEEKLKERLEELEEDLSSLEQE-------- 752
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 698 EEEKKQLQVKLEEEKTHLQEKLRlqhemELKARLTQAQASFEREReglqssawtEEKVRGLTQELEQFHQEQLTSLVE-K 776
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLH-----KLEEALNDLEARLSHSR---------IPEIQAELSKLEEEVSRIEARLREiE 818
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 777 HTLEKEELRKELLEKhqrelqegryESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQ 856
Cdd:TIGR02169 819 QKLNRLTLEKEYLEK----------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 857 KMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKEPGNSALEEReqekfnLKEELER 933
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIedpKGEDEEIPEEELSLED------VQAELQR 962
|
....*...
gi 291167747 934 CKVQSSTL 941
Cdd:TIGR02169 963 VEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-869 |
2.19e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 344 LALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 421
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 422 LDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLT 501
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 502 NKLQRNLENVLAEKF------GDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRA------------ 563
Cdd:COG1196 375 AEAEEELEELAEELLealraaAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEaleeaaeeeael 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 564 -----QGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK 638
Cdd:COG1196 455 eeeeeALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 639 QLDETVVSCkkAQENMKQRHENETHTLEKQISDLKNEIA-------------ELQGQAAVLKEAHHEATCRHEEEKKQLQ 705
Cdd:COG1196 535 AYEAALEAA--LAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldkiraRAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 706 VKLEEEKTHLQEKLRLQH--EMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQ-EQLTSLVEKHTLEKE 782
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAArlEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEaEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 783 ELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENL 862
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*..
gi 291167747 863 KKQISEL 869
Cdd:COG1196 773 EREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
648-1093 |
4.10e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.74 E-value: 4.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 648 KKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK---EAHHEATCRHEEEKKQlQVKLEEEKTHLQEKLRLQHE 724
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQ-NNQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 725 M--ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKEL---LEKHQRELQEG 799
Cdd:TIGR04523 247 EisNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkseLKNQEKKLEEI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 800 RYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLE 879
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 880 NTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGN-SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHI 958
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 959 VQQENHLLKDELEKMKQLHRCPD--LSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLA------KSSLLEHRIATM 1030
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNkddfelKKENLEKEIDEK 566
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1031 KQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQM-------SRMKSDLRVTQQEKEALKQEVMSL 1093
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNI 636
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
607-901 |
4.93e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 607 AELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDEtvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVL 686
Cdd:COG1196 212 AERYRELKEELKELEAELLLLKLRELEAELEELEAE-----LEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 687 KEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM-ELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQf 765
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELaELEEELEELEEELEELEEELEE---AEEELEEAEAELAE- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 766 hQEQLTSLVEKHTLEKEELRKELLEKHQRELQegryESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKT 845
Cdd:COG1196 363 -AEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 846 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRL 901
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
401-1009 |
1.20e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 401 ASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEEN------YIRDRLA 474
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEeakkaeEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 475 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDP-SSAEFFLQEERLTQMRNEYERQCRVLQDQVDE 553
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 554 LQSELEEYRAQGRVLRLPLKNSpSEEVEANSGGIEPEHGLGSEEcnplnmSIEAELVIEQMKEQHHRDicclrlELEDKV 633
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 634 RHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 713
Cdd:PTZ00121 1401 EEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 714 HLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA----WTEEKVRG--LTQELEQFHQEQLTSLVEKHTLEK----EE 783
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAdeakKAEEAKKAdeAKKAEEAKKADEAKKAEEKKKADElkkaEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 784 LRK-------ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSisNLKLGTLNGSQEEMWQKTETVKQENaaVQ 856
Cdd:PTZ00121 1557 LKKaeekkkaEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK--KMKAEEAKKAEEAKIKAEELKKAEE--EK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 857 KMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKV 936
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 291167747 937 QSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALSEE 1009
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE--EKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-935 |
1.63e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 373 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRKEREQI--- 444
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAELael 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 445 ---LQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQR---NLENVLAEKFGD 518
Cdd:COG1196 266 eaeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEeleELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 519 LDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNspSEEVEANSGGIEPEHGLGSEEC 598
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 599 NPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHEnETHTLEKQISDLKNEIAE 678
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE-ELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 679 LQGQAAVLKEAHHEA-TCRHEEEKKQLQVKLEEEKTHLQEKL-------------RLQHEMELKARLTQAQASFEREREG 744
Cdd:COG1196 503 YEGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALaaalqnivveddeVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 745 LQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRElqEGRYESEKLQQENSILRNEITTLNEED 824
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE--AALRRAVTLAGRLREVTLEGEGGSAGG 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 825 SISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM 904
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|...
gi 291167747 905 LCQKEKEPGNSALEEREQEK--FNLKEELERCK 935
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPdlEELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
637-972 |
2.97e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 637 EKQLDETvvsckkaQENMkQRHENETHTLEKQISDLKN--EIAEL-QGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 713
Cdd:COG1196 178 ERKLEAT-------EENL-ERLEDILGELERQLEPLERqaEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 714 HLQEKL-RLQHEM-ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQ---FHQEQLTSLVEKHTLEKEELR--K 786
Cdd:COG1196 250 ELEAELeELEAELaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiaRLEERRRELEERLEELEEELAelE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 787 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQI 866
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 867 SELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEpgNSALEEREQEKFNLKEELERCKVQSSTLVSSLE 946
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL--EEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340
....*....|....*....|....*.
gi 291167747 947 AELSEVKIQTHIVQQENHLLKDELEK 972
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
412-798 |
5.38e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 5.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 412 ERRNEyNLRKLD--EEYKERIAALKNELRKEREQILQQAGKQR--LELEQEIEKAKTEENYIRDRLALSLKEnsRLENEL 487
Cdd:COG1196 172 ERKEE-AERKLEatEENLERLEDILGELERQLEPLERQAEKAEryRELKEELKELEAELLLLKLRELEAELE--ELEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 488 LENAEKLAEYEnltnklqrnlenvlaekfgdldpssAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAqgrv 567
Cdd:COG1196 249 EELEAELEELE-------------------------AELAELEAELEELRLELEE----LELELEEAQAEEYELLA---- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 568 lrlplknspseEVEANSGGIEPEhglgseecnpLNMSIEAELVIEQMKEQhhrdicclRLELEDKVRHYEKQLDETVVSC 647
Cdd:COG1196 296 -----------ELARLEQDIARL----------EERRRELEERLEELEEE--------LAELEEELEELEEELEELEEEL 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 648 KKAQENMKQRhENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM-E 726
Cdd:COG1196 347 EEAEEELEEA-EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeE 425
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291167747 727 LKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 798
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-1011 |
1.24e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 315 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 394
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 395 KLKSLMASEvddhhaAIERRNEYNLRKLDEEYKERIAALKNELRKEREQilqqagkqrLELEQEIEKAKTEENYIRDRLA 474
Cdd:pfam02463 354 EEEEEEELE------KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE---------LELKSEEEKEAQLLLELARQLE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 475 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDEL 554
Cdd:pfam02463 419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 555 QSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEpEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVR 634
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 635 HYEKQLDETVVSCKK----------------------AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHE 692
Cdd:pfam02463 578 RKLRLLIPKLKLPLKsiavleidpilnlaqldkatleADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 693 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTS 772
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 773 LVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQEN 852
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 853 AAVQKMVENLKKqISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELE 932
Cdd:pfam02463 818 EEEQLLIEQEEK-IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 933 RCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLS--DFQQKISSVLSYNEKLLKEKEALSEEL 1010
Cdd:pfam02463 897 EEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEkeKEENNKEEEEERNKRLLLAKEELGKVN 976
|
.
gi 291167747 1011 N 1011
Cdd:pfam02463 977 L 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
346-679 |
1.34e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 346 LENELLVTKNSIHQAalasfKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEY--NLRKLD 423
Cdd:TIGR02168 682 LEEKIEELEEKIAEL-----EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERiaQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 424 EEYKERIAALKNELRKEREQiLQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 503
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEE-LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 504 LQRNLEnvlaekfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN 583
Cdd:TIGR02168 836 TERRLE--------DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 584 SGGIEPEHGLgsEECNPLNMSIEAELVIEQMKEQHhrdicclrleLEDKVR-HYEKQLDEtvvsckkaQENMKQRHENET 662
Cdd:TIGR02168 908 SKRSELRREL--EELREKLAQLELRLEGLEVRIDN----------LQERLSeEYSLTLEE--------AEALENKIEDDE 967
|
330
....*....|....*..
gi 291167747 663 HTLEKQISDLKNEIAEL 679
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
316-1018 |
1.51e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 316 EEGIENSQEILKALDFSLDgniNLTELTLALEN--ELLVTKnsihQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKA 393
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIE---RLEKFIKRTENieELIKEK----EKELEEVLREINEISSELPELREELEKLEKEVKEL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 394 EKLKSLMasevddhhaaierrneynlrkldEEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKakteenyirdrl 473
Cdd:PRK03918 234 EELKEEI-----------------------EELEKELESLEGSKRKLEEKI-RELEERIEELKKEIEE------------ 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 474 alsLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKfgdldpssaefflqeERLTQMRNEYERQCRVLQDQVDE 553
Cdd:PRK03918 278 ---LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL---------------SRLEEEINGIEERIKELEEKEER 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 554 LQsELEEYRaqgrvlrlplknspsEEVEANSGGIEPEHGLgseecnplnmsIEAELVIEQMKEQHHRDICCLRLEledkv 633
Cdd:PRK03918 340 LE-ELKKKL---------------KELEKRLEELEERHEL-----------YEEAKAKKEELERLKKRLTGLTPE----- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 634 rHYEKQLDETvvsckkaqENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEA-TCRH---EEEKKQLQVK-- 707
Cdd:PRK03918 388 -KLEKELEEL--------EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpVCGReltEEHRKELLEEyt 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 708 -----LEEEKTHLQEKLRlqhemELKARLTQAQASFEREREgLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKE 782
Cdd:PRK03918 459 aelkrIEKELKEIEEKER-----KLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 783 ELRKelLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEmwQKTETVKQENAAVQKMVEnL 862
Cdd:PRK03918 533 KLIK--LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE--ELEERLKELEPFYNEYLE-L 607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 863 KKQISELKIKNQQLDLENTELSQKnsqnQEKLQELNQRLtEMLCQKEKEPGNSALEEREQEKFNLKEELERckvqsstLV 942
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKA----FEELAETEKRL-EELRKELEELEKKYSEEEYEELREEYLELSR-------EL 675
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 943 SSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLA 1018
Cdd:PRK03918 676 AGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKALERVEELREKVKKYKALLKERALSKVGEIA 749
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
361-822 |
2.09e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 361 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 435
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 436 ELRKEREQILQQAGKQRL---ELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvL 512
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 513 AEKFGDL--DPSSAEFFLQE-----ERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ--GRvlrlPLKNSPseevean 583
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAGKCPecGQ----PVEGSP------- 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 584 sggiepeHGLGSEECNPLNMSIEAELviEQMKEQhhRDICCLRLELEDKVRHYEKQLdETVVSCKKAQENMKQRHENETH 663
Cdd:PRK02224 466 -------HVETIEEDRERVEELEAEL--EDLEEE--VEEVEERLERAEDLVEAEDRI-ERLEERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 664 TLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKL-RLQHEMELKARLTQAQASFERER 742
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIeSLERIRTLLAAIADAEDEIERLR 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 743 EGLQSSAWTEEKVRGLTQELEQFHQEqLTSLVEKHTLEKEELRKELLEKHQR----ELQEGRYESEKLQQENSILRNEIT 818
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRE-LEAEFDEARIEEAREDKERAEEYLEqveeKLDELREERDDLQAEIGAVENELE 691
|
....
gi 291167747 819 TLNE 822
Cdd:PRK02224 692 ELEE 695
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
753-1060 |
8.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 8.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 753 EKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELlEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDsisnlklg 832
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAEL-EELEAELEELEAELAELEAELEELRLELEELELEL-------- 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 833 tlngsqEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEP 912
Cdd:COG1196 284 ------EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA--EEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 913 GNSALEEREQEKFNLKEELERckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCpdLSDFQQKISSV 992
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL--EEELEELEEAL 430
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 291167747 993 LSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLED 1060
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
754-1244 |
4.04e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 754 KVRGLTQELEQFHQEQLTSLVEKHTLEKE--ELRKELLEKhQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKL 831
Cdd:TIGR04523 97 KINKLNSDLSKINSEIKNDKEQKNKLEVElnKLEKQKKEN-KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 832 GTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISelkiKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkeke 911
Cdd:TIGR04523 176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNNQLKDNIEKKQQEINEK------- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 912 pgNSALEEREQEKFNLKEELERCK----------VQSSTLVSSLEAELSEVKIQTHIVQQE-----NHLLKDELEKMKQL 976
Cdd:TIGR04523 245 --TTEISNTQTQLNQLKDEQNKIKkqlsekqkelEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKK 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 977 HRC--PDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSsllEHRIATMKQEQKSWEHQSASLKSQLVASQEK 1054
Cdd:TIGR04523 323 LEEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESK 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1055 VQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNE 1134
Cdd:TIGR04523 400 IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1135 EQQLLWQENERLQTMVQ---NTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANR 1211
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKelkKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENL 559
|
490 500 510
....*....|....*....|....*....|...
gi 291167747 1212 KvSQMNSLEQELETIHLENEGLKKKQVKLDEQL 1244
Cdd:TIGR04523 560 E-KEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
628-1010 |
9.02e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 9.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 628 ELEDKVRHYEKQLDEtvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE---KKQL 704
Cdd:pfam01576 191 DLEERLKKEEKGRQE--------LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEEtaqKNNA 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 705 QVKLEEEKTHLQEKLR-LQHEMELKARLTQAQASFEREREGLQSS---------------AWTEEKVRGLTQELEQ---F 765
Cdd:pfam01576 263 LKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTEledtldttaaqqelrSKREQEVTELKKALEEetrS 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 766 HQEQLTSLVEKHTLEKEELrKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGS-QEEMWQK 844
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEEL-TEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQlQELQARL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 845 TETVKQENAAVQKM------VENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQ-ELNQRLTEMLCQKEKEPGNSAL 917
Cdd:pfam01576 422 SESERQRAELAEKLsklqseLESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQeETRQKLNLSTRLRQLEDERNSL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 918 EEREQEKFNLKEELERckvqsstLVSSLEAELSEVKIQthiVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNE 997
Cdd:pfam01576 502 QEQLEEEEEAKRNVER-------QLSTLQAQLSDMKKK---LEEDAGTLEALEEGKKRLQR--ELEALTQQLEEKAAAYD 569
|
410
....*....|...
gi 291167747 998 KLLKEKEALSEEL 1010
Cdd:pfam01576 570 KLEKTKNRLQQEL 582
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
635-1235 |
1.07e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 635 HYEKQLDETVVSCKKAQENMKQR---HENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEe 711
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESnelHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHE- 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 712 kthLQEKLRLQHEMelkarLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELrKELLEK 791
Cdd:pfam15921 154 ---LEAAKCLKEDM-----LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSL-GSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 792 HQRElqegryesekLQQENSILRNEITTLneEDSISNLKLGTLNGSQEEMWQKTETVKQ----ENAAVQKMVENLKKQIS 867
Cdd:pfam15921 225 ILRE----------LDTEISYLKGRIFPV--EDQLEALKSESQNKIELLLQQHQDRIEQliseHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 868 ELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCKVQSSTlvsslea 947
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQL---------RSELREAKRMYEDKIEELEKQLVLANS------- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 948 ELSEVKIQTHIVQQENHLLKDELEKMkqlhrCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRI 1027
Cdd:pfam15921 357 ELTEARTERDQFSQESGNLDDQLQKL-----LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1028 ATMKQEQKSweHQSASLKSQLVASQEKVQNLEdTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAP 1107
Cdd:pfam15921 432 EALLKAMKS--ECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1108 EIATHPSGLHNQQKR----LSWDKLDHLMNEEQQLlwqenERLQTMVQNTKAELTHSR---EKVRQLESNLLPKHQKHLN 1180
Cdd:pfam15921 509 ERAIEATNAEITKLRsrvdLKLQELQHLKNEGDHL-----RNVQTECEALKLQMAEKDkviEILRQQIENMTQLVGQHGR 583
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 291167747 1181 PSGTMnptEQEKLSLKRECD----QFQKEQSPANRKVSQMNSLEQ-----ELETIHLENEGLKK 1235
Cdd:pfam15921 584 TAGAM---QVEKAQLEKEINdrrlELQEFKILKDKKDAKIRELEArvsdlELEKVKLVNAGSER 644
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-565 |
1.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 370 RHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY---KERIAALKNELRKER 441
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELerlEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 442 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEyenltnkLQRNLENVLAEkfgdldp 521
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA-------LRAEAAALLEA------- 395
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 291167747 522 SSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQG 565
Cdd:COG4913 396 LEEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRK 435
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
696-986 |
1.37e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.82 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 696 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgltqELEQFHQEQLTSLVE 775
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKR----ELERIRQEEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 776 KhTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSI----SNLKLGTLNGSQEEMWQKTETVKQE 851
Cdd:pfam17380 376 R-MRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIraeqEEARQREVRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 852 NAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKL-QELNQRLTEM--------LCQKEKEPGNSALEEREQ 922
Cdd:pfam17380 455 EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILeKELEERKQAMieeerkrkLLEKEMEERQKAIYEEER 534
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 291167747 923 ------EKFNLKEELERCKVQSSTLV-----SSLEAELSEVKIQTHIVQQENHLLKDE----LEKMKQLHRcPDLSDFQ 986
Cdd:pfam17380 535 rreaeeERRKQQEMEERRRIQEQMRKateerSRLEAMEREREMMRQIVESEKARAEYEattpITTIKPIYR-PRISEYQ 612
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
628-1157 |
1.71e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 628 ELEDKVRHYEKQlDETVVSCKKAQENMKQRHE---NETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEekkql 704
Cdd:PRK02224 217 ELDEEIERYEEQ-REQARETRDEADEVLEEHEerrEELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE----- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 705 qvkLEEEKTHLQEKLRLQhEMELKArLTQAQASFEREREGLQSSAwteEKVRGLTQELEQfHQEQLTSLVEKHTLEKEEL 784
Cdd:PRK02224 291 ---LEEERDDLLAEAGLD-DADAEA-VEARREELEDRDEELRDRL---EECRVAAQAHNE-EAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 785 RKELLEKhQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 864
Cdd:PRK02224 362 REEAAEL-ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 865 QISElkikNQQL-----------DLENTELSQKNSQNQEKLQELNQRLTEMLCQKEkepgnsALEEREQEKFNLKE---E 930
Cdd:PRK02224 441 RVEE----AEALleagkcpecgqPVEGSPHVETIEEDRERVEELEAELEDLEEEVE------EVEERLERAEDLVEaedR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 931 LERCKVQSSTLVSSLEAELSEVKIQTHIVQqENHLLKDELEKMKQLHR---CPDLSDFQQKISSVLSYNEKLLKEKEALs 1007
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAE-ELRERAAELEAEAEEKReaaAEAEEEAEEAREEVAELNSKLAELKERI- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1008 EELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALK 1087
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 291167747 1088 -QEVMSLHKQLQNAGGkswapeiathpsGLHNQQKRLS--WDKLDHLMNEEQQL--LWQENERLQTMVQNTKAEL 1157
Cdd:PRK02224 669 lDELREERDDLQAEIG------------AVENELEELEelRERREALENRVEALeaLYDEAEELESMYGDLRAEL 731
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
308-822 |
1.78e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLR 387
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 388 SDLDKAEKLKSLMASevddHHAAIERRNEyNLRKLDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEEN 467
Cdd:COG1196 404 ELEEAEEALLERLER----LEEELEELEE-ALAELEEEEEEEEEALE-EAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 468 YIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDL--DPSSAEFFLQEERLTQMRNEYERQCR 545
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigVEAAYEAALEAALAAALQNIVVEDDE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 546 VLQDQVDELQSeleeyRAQGRVLRLPLKNSPSEEVEANSGGIEPEHglgseecnPLNMSIEAELVIEQMKEQHHRDICCL 625
Cdd:COG1196 558 VAAAAIEYLKA-----AKAGRATFLPLDKIRARAALAAALARGAIG--------AAVDLVASDLREADARYYVLGDTLLG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 626 RLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQ 705
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE----LELEEALL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 706 VKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKhtLEKEelR 785
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER--LERE--I 776
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 291167747 786 KEL-------LEKHQrELQEgRYESekLQQENSILRNEITTLNE 822
Cdd:COG1196 777 EALgpvnllaIEEYE-ELEE-RYDF--LSEQREDLEEARETLEE 816
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
307-507 |
1.97e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 307 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNsihQAALASFKAEIRHLLERVDQVVREKE 384
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 385 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKE---RIAALKNELRKEREQILQ 446
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPnhpDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 291167747 447 QAGKQRLELEQEIEKAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRN 507
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVEVA 363
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
629-1351 |
2.09e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 629 LEDKVRHYEKQLDETVVSCKKAQEnmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVK- 707
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQ--KREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKa 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 708 -LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKhtlEKEELRK 786
Cdd:TIGR00618 302 vTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS---CQQHTLT 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 787 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQI 866
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 867 SELKIKNQQLDLENTELSQKnsqnqeklqelnqrltEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLE 946
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTK----------------EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 947 AELSEVKIQTHIVQQENHllkdelekmkqlhrcpdlsdfQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSsllehr 1026
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQL---------------------ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL------ 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1027 iatmkqeqkswehqsASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEvmSLHKQLQNAGGKSWA 1106
Cdd:TIGR00618 576 ---------------TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP--EQDLQDVRLHLQQCS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1107 PEIATHPSGLHNQQKRLSWDKLDH---LMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQleSNLLPKHQkhlnpsg 1183
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREhalSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ--CQTLLREL------- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1184 tmnptEQEKLSLKRECDQFQKEQSpanrkvSQMNSLEQELETIhleNEGLKKKQVKLDEQLMEMQHLRSTATPSPSPHAW 1263
Cdd:TIGR00618 710 -----ETHIEEYDREFNEIENASS------SLGSDLAAREDAL---NQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1264 DLQLLQQ--QACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTPQGNQEQLVTVMEER---MIEVEQKLKLVK 1338
Cdd:TIGR00618 776 TGAELSHlaAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKsatLGEITHQLLKYE 855
|
730
....*....|...
gi 291167747 1339 RLLQEKVNQLKEQ 1351
Cdd:TIGR00618 856 ECSKQLAQLTQEQ 868
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-790 |
2.77e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 404 VDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAG--KQRLELEQEIEKAKTEENYIRDRLALSLKENS 481
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSepAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 482 RLENELLENAEKLAEYENLTNKLQRNlENVLAEKFGDLdpssaEFFLQEerLTQMRNEYERQCRVLQDQVDELQSELEEY 561
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQE-EEKLKERLEEL-----EEDLSS--LEQEIENVKSELKELEARIEELEEDLHKL 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 562 RAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLD 641
Cdd:TIGR02169 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 642 ETVVSCKKAQENMKqRHENETHTLE-------KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTH 714
Cdd:TIGR02169 858 NLNGKKEELEEELE-ELEAALRDLEsrlgdlkKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291167747 715 LQEKLRLQHEMELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFhQEQLTSLVEKH-TLEKEelRKELLE 790
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA---LEPVNMLAIQEYEEV-LKRLDELKEKRaKLEEE--RKAILE 1007
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
381-840 |
2.95e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRKEREQILQQagKQRLELEQEIE 460
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 461 KAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRnLENVLAEKFGDLDPSSAEfflQEERLTQMRNEY 540
Cdd:COG4717 136 ALEAELAELPERLE-------ELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEE---ELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 541 ERQCRVLQDQVDELQSELEEYRAQGRVLRLPL-KNSPSEEVEANS------GGIEPEHGLGSEECNPLNMSIEAELVIEQ 613
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELeAAALEERLKEARlllliaAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 614 MkeqhhrdICCLRLELEDKVRHYEKQLDETVVS------CKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK 687
Cdd:COG4717 285 L-------LALLFLLLAREKASLGKEAEELQALpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 688 EAHHEATC-RHEEEKKQL--QVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgLTQELEQ 764
Cdd:COG4717 358 ELEEELQLeELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE-LEEELEE 436
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291167747 765 FhQEQLTSLVEKHtlekEELRKELLE-KHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEE 840
Cdd:COG4717 437 L-EEELEELEEEL----EELREELAElEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-562 |
4.91e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE---RIAALKNELRKEREQI 444
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEleeEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 445 lqqagkQRLE----LEQEIEKAKTEENYIrdRLALSLKENSRLENELLENAEKLAEYENLTNKL------QRNLENVLAE 514
Cdd:PRK05771 124 ------ERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEE 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 291167747 515 KFGDLDPSSAEFFlQEERLTQMRNEYERQCRVLQDQVDELQSELEEYR 562
Cdd:PRK05771 196 ELKKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELA 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
425-1247 |
7.54e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 7.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 425 EYKERIAALKNELRKEREQILQQAGKQRLELEQE----IEKAKTEENYirdrlALSLKENSRLENELLENAEKLAEYENL 500
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQElklkEQAKKALEYY-----QLKEKLELEEEYLLYLDYLKLNEERID 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 501 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEV 580
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 581 EANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKA---------Q 651
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAklkeeelelK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 652 ENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQV---KLEEEKTHLQEKLRLQHEMELK 728
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKqelKLLKDELELKKSEDLLKETQLV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 729 ARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLE--------------KHQR 794
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvaistavivevsatADEV 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 795 ELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVEnlKKQISELKIKNQ 874
Cdd:pfam02463 561 EERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE--GILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 875 QLDLENTELSQKNSQNQEKLQELNQRLTEMLcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKI 954
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLS-ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 955 QTHIVQQENHLLKDELEKMkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ 1034
Cdd:pfam02463 718 EAEELLADRVQEAQDKINE-------ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1035 KSwEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQnAGGKSWAPEIATHPS 1114
Cdd:pfam02463 791 EK-EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE-EELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1115 GLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTM--------- 1185
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEllleeadek 948
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 1186 ----NPTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1247
Cdd:pfam02463 949 ekeeNNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
434-1033 |
9.54e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 9.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 434 KNELRKEREQILQQAGKQRLELEQEIEK-AKTEENYIRDRLALSLKENS----RLENELLENAEKL--------AEYENL 500
Cdd:pfam05483 25 KSNLSKNGENIDSDPAFQKLNFLPMLEQvANSGDCHYQEGLKDSDFENSeglsRLYSKLYKEAEKIkkwkvsieAELKQK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 501 TNKLQRNLENVLAEK-------FGDLDPS-SAEFFLQEER-LTQMRNEYERQCRVLQD---QVDELQSELEEYRAQGRVL 568
Cdd:pfam05483 105 ENKLQENRKIIEAQRkaiqelqFENEKVSlKLEEEIQENKdLIKENNATRHLCNLLKEtcaRSAEKTKKYEYEREETRQV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 569 RLPLKNSPSE--------EVEANSGGIEPEHGLGSE-------------ECNPLNMSIEAELVIEQMKEQHHRDICCLRL 627
Cdd:pfam05483 185 YMDLNNNIEKmilafeelRVQAENARLEMHFKLKEDhekiqhleeeykkEINDKEKQVSLLLIQITEKENKMKDLTFLLE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 628 ELEDKVRHYEKQldetvvsCKKAQENMKQRHENETHtLEKQISDLKNEIAELQGQAAVLKEAHHEATcrheeekKQLQVK 707
Cdd:pfam05483 265 ESRDKANQLEEK-------TKLQDENLKELIEKKDH-LTKELEDIKMSLQRSMSTQKALEEDLQIAT-------KTICQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 708 LEEEKTHLQE--KLRLQHEM---ELKARLTQAQASFEREREGLQSSawtEEKVRGLTQELEQFHQ--EQLTSLVEKHTLE 780
Cdd:pfam05483 330 TEEKEAQMEElnKAKAAHSFvvtEFEATTCSLEELLRTEQQRLEKN---EDQLKIITMELQKKSSelEEMTKFKNNKEVE 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 781 KEELRKELLEKHQRELQEGRYE--SEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQEnaavqkm 858
Cdd:pfam05483 407 LEELKKILAEDEKLLDEKKQFEkiAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE------- 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 859 VENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQelNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQS 938
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELK--KHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEF 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 939 STLVSSLEAELSevKIQTHIVQQENHLLKDELEKMKQLHRCPDL----SDFQQKISSVLSYNEKLLKEKEALSEELNSCV 1014
Cdd:pfam05483 558 IQKGDEVKCKLD--KSEENARSIEYEVLKKEKQMKILENKCNNLkkqiENKNKNIEELHQENKALKKKGSAENKQLNAYE 635
|
650
....*....|....*....
gi 291167747 1015 DKLAKsslLEHRIATMKQE 1033
Cdd:pfam05483 636 IKVNK---LELELASAKQK 651
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-569 |
1.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS---------EVDDHHAAIERRNEyNLRKLD------ 423
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEA-ELERLDassddl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 424 EEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 503
Cdd:COG4913 688 AALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 504 LQRNLENvlaekfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLR 569
Cdd:COG4913 767 LRENLEE-------RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLE 825
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
378-933 |
1.21e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 378 QVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQiLQQAGKQRLELEQ 457
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK-RAAHVKQQSSIEE 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 458 EIEKAKT---EENYIRDR--LALSLKENSRLENELLENAEKLAE-YENLTNKLQ--RNLENVLAEKFGDLDPSSAEFFLQ 529
Cdd:TIGR00618 343 QRRLLQTlhsQEIHIRDAheVATSIREISCQQHTLTQHIHTLQQqKTTLTQKLQslCKELDILQREQATIDTRTSAFRDL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 530 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVL-RLPLKNSPSEEVEANSGGI-EPEHGLGSEECNPLNMSIEA 607
Cdd:TIGR00618 423 QGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqESAQSLKEREQQLQTKEQIhLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 608 ELVIEQMK---EQHHRDI------CCLRLELEDKVRHYEKQLDETVVSC------KKAQENMKQRHENETHTLEKQISDL 672
Cdd:TIGR00618 503 PCPLCGSCihpNPARQDIdnpgplTRRMQRGEQTYAQLETSEEDVYHQLtserkqRASLKEQMQEIQQSFSILTQCDNRS 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 673 K-------NEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGL 745
Cdd:TIGR00618 583 KedipnlqNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 746 QSSAWTEEKVRGLTQELEQFHQEQltSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENsILRNEITTLNEEDS 825
Cdd:TIGR00618 663 HALSIRVLPKELLASRQLALQKMQ--SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN-ASSSLGSDLAARED 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 826 ISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELK----IKNQQLDLENTELSQKNSQNQEKLQ--ELNQ 899
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAaeiqFFNRLREEDTHLLKTLEAEIGQEIPsdEDIL 819
|
570 580 590
....*....|....*....|....*....|....
gi 291167747 900 RLTEMLCQKEKEPGNSALEEREQEKFNLKEELER 933
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
381-899 |
2.33e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 381 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALkNELRKEREQI---LQQAGKQRLEL 455
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQI-SELKKQNNQLkdnIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 456 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEerltq 535
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQ----- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 536 mrneyERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANsggiepehglgsEECNPLNMSIEAELVIEQMK 615
Cdd:TIGR04523 320 -----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ------------RELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 616 EQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATC 695
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 696 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKarlTQAQASFEREREGLqssawtEEKVRGLTQEleqfhQEQLTSLVE 775
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSK---EKELKKLNEEKKEL------EEKVKDLTKK-----ISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 776 KHTLEKEELRKELLEKhqrelqEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAV 855
Cdd:TIGR04523 528 KLESEKKEKESKISDL------EDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 291167747 856 QKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQ 899
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
442-1249 |
2.57e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 442 EQILQQAGKQRLELEQEI-----EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKf 516
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAagsrlKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 517 gdldpssaefflQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAqgrvlRLPLKNSPSEEVEANSGGIEPEHGLGSE 596
Cdd:pfam02463 224 ------------EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ-----EIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 597 ECNPLnMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEI 676
Cdd:pfam02463 287 ELKLL-AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 677 AELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQE-KLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKV 755
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaQLLLELARQLEDLLKEEKKEELEILEEEEES--IELKQ 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 756 RGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLN 835
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 836 GSQEEMWQKTETVKQENAAVQKMVEnlkkQISELKIKNQQLDLENTELSQKNSQNQEKLQeLNQRLTEMLCQKEKEPGNS 915
Cdd:pfam02463 524 IISAHGRLGDLGVAVENYKVAISTA----VIVEVSATADEVEERQKLVRALTELPLGARK-LRLLIPKLKLPLKSIAVLE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 916 ALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCpdlsdfqqKISSVLSY 995
Cdd:pfam02463 599 IDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKS--------EVKASLSE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 996 NEKLLKEKEALSEELNSCVDKLAKSSllehRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSD 1075
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILR----RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1076 LRVTQQEK---EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQN 1152
Cdd:pfam02463 747 EEEEEEEKsrlKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1153 TKAELTHSREKVRQLESNLLpKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEG 1232
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQ-KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE 905
|
810
....*....|....*..
gi 291167747 1233 LKKKQVKLDEQLMEMQH 1249
Cdd:pfam02463 906 SQKLNLLEEKENEIEER 922
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
791-1016 |
2.63e-05 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 48.58 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 791 KHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEemwqkTETVKQENAAVQK-----MVENLKKQ 865
Cdd:COG5059 347 DSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKE-----TETLKSRIDLIMKsiisgTFERKKLL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 866 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSL 945
Cdd:COG5059 422 KEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLN--KLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLN 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 291167747 946 EAELSEVKIQTHIVQQENHLLKDELEkmkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDK 1016
Cdd:COG5059 500 LRSSRSHSKFRDHLNGSNSSTKELSL---------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDV 561
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-975 |
2.88e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 780 EKEELRKELlEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMV 859
Cdd:COG4942 21 AAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 860 ENLKKQISELKIKNQQLDLENTE------------------LSQKNSQNQEKLQELNQRLTEMLCQKEK-EPGNSALEER 920
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAElEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 291167747 921 EQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQ 975
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-823 |
4.41e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 649 KAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEM--- 725
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQKEELAELLRALYRLgrq 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 726 -------------ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfHQEQLTSLVEKHTLEKEEL------RK 786
Cdd:COG4942 120 pplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA-ERAELEALLAELEEERAALealkaeRQ 198
|
170 180 190
....*....|....*....|....*....|....*..
gi 291167747 787 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEE 823
Cdd:COG4942 199 KLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
530-1244 |
7.97e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 530 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAEL 609
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 610 VIEQMKE---QHHRDICCLRLELEDKVRHYEKQLDEtvvsckkaQENMKQRH-ENETHTLEKQISDLKNEIAELQGQAAV 685
Cdd:pfam15921 171 QIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYE--------HDSMSTMHfRSLGSAISKILRELDTEISYLKGRIFP 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 686 LkEAHHEATCRHEEEKKQLQVKLEEEKThlqEKLRLQHEMELKArLTQAQASFEREREGLQSSAwteEKVRGLTQELEQF 765
Cdd:pfam15921 243 V-EDQLEALKSESQNKIELLLQQHQDRI---EQLISEHEVEITG-LTEKASSARSQANSIQSQL---EIIQEQARNQNSM 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 766 HQEQLTSLVEKHTLEKEELRK---------ELLEKH----QRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLG 832
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREakrmyedkiEELEKQlvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 833 TLNGSQEEMWQKT-----------ETVKQENAAVQKMVENLKKQISELKiknQQLDLENTELSQKNsQNQEKLQELNQRL 901
Cdd:pfam15921 395 LEKEQNKRLWDRDtgnsitidhlrRELDDRNMEVQRLEALLKAMKSECQ---GQMERQMAAIQGKN-ESLEKVSSLTAQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 902 ---TEMLCQ--KEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQL 976
Cdd:pfam15921 471 estKEMLRKvvEELTAKKMTLESSERTVSDLTASLQ----EKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 977 HRCPDLSDFQ--QKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEK 1054
Cdd:pfam15921 547 QTECEALKLQmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEAR 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1055 VQNLE-DTVQNVNLQMSRMKSdLRVTQQEKEALKQEVMSLHKQLQNAggkSWAPEIATHPSGLHNQQKRLSWDKLDHLMN 1133
Cdd:pfam15921 627 VSDLElEKVKLVNAGSERLRA-VKDIKQERDQLLNEVKTSRNELNSL---SEDYEVLKRNFRNKSEEMETTTNKLKMQLK 702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1134 EEQQLLWQENERLQTM----------VQNTKAELTHSREKVRQLESNLLPKHQkhlnpsgTMNPTEQEKLSLKRECDQFQ 1203
Cdd:pfam15921 703 SAQSELEQTRNTLKSMegsdghamkvAMGMQKQITAKRGQIDALQSKIQFLEE-------AMTNANKEKHFLKEEKNKLS 775
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 291167747 1204 KEQSPAnrkVSQMNSLEQELETIHLENEGLKKKQVKLDEQL 1244
Cdd:pfam15921 776 QELSTV---ATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
650-869 |
8.75e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 8.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 650 AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRlqhemELKA 729
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELA-----ELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 730 RLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKE--ELRKELLEKHQRELQEGRYESEKLQ 807
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291167747 808 QENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISEL 869
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
879-1125 |
9.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 9.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 879 ENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHI 958
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIR----ALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 959 VQQENHLLKDELEKMK----QLHRCPDL------SDFQQKISSvLSYNEKLLKEKEALSEELNSCVDKLAkssllehria 1028
Cdd:COG4942 95 LRAELEAQKEELAELLralyRLGRQPPLalllspEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1029 tmkQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPE 1108
Cdd:COG4942 164 ---ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*..
gi 291167747 1109 IATHPSGLHNQQKRLSW 1125
Cdd:COG4942 241 ERTPAAGFAALKGKLPW 257
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
359-914 |
1.36e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSlmASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELR 438
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK--KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 439 KEREQILQQAGKQRlelEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAE--------KLAEYENLTNKLQRNLEn 510
Cdd:PTZ00121 1457 KKAEEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakkkadeaKKAEEAKKADEAKKAEE- 1532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 511 vlAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQgrvlrlPLKNSPSEEVEANSGGIEPE 590
Cdd:PTZ00121 1533 --AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE------EAKKAEEARIEEVMKLYEEE 1604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 591 HGLGSEEcnpLNMSIEAELVIEQMK--EQHHRDICCLRLELEDKVRHYEK-QLDETVVSCKKAQENMKQRHEN-ETHTLE 666
Cdd:PTZ00121 1605 KKMKAEE---AKKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEEDKkKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 667 KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQ 746
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 747 SSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQrELQEGR-----YESEKLQQENSILRNEITT-- 819
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA-NIIEGGkegnlVINDSKEMEDSAIKEVADSkn 1840
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 820 --LNEEDSISNLKLGTLNGSQEEMWQKTETVKQ--------ENAAVQKMVENLKKQISELKIKNQQLDLENTELS-QKNS 888
Cdd:PTZ00121 1841 mqLEEADAFEKHKFNKNNENGEDGNKEADFNKEkdlkeddeEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIdDKLD 1920
|
570 580
....*....|....*....|....*.
gi 291167747 889 QNQEKLQELNQRLTEMLCQKEKEPGN 914
Cdd:PTZ00121 1921 KDEYIKRDAEETREEIIKISKKDMCI 1946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
866-1215 |
1.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 866 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQE-----KFNLKEELERCKVQSST 940
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 941 LVSSLEAELSEVKIQTHIVQQENHLLKDELEKMkqlhrcpdlsdfqqkissvlsyNEKLLKEKEALSEELNSCVDKL-AK 1019
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL----------------------NKKIKDLGEEEQLRVKEKIGELeAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1020 SSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1099
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1100 AGGKswapeiathpsgLHNQQKRLswDKLDHLMNE---EQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPK-- 1174
Cdd:TIGR02169 383 TRDE------------LKDYREKL--EKLKREINElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKal 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 291167747 1175 -----HQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQ 1215
Cdd:TIGR02169 449 eikkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
754-968 |
1.88e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 754 KVRGLTQEL-----EQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNE--EDSI 826
Cdd:PHA02562 175 KIRELNQQIqtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMdiEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 827 SNL-KLGTLNG---SQEEMWQK--------------TETVKQENAAVQKMVENLK---KQISELKIKNQQLDL---ENTE 882
Cdd:PHA02562 255 AALnKLNTAAAkikSKIEQFQKvikmyekggvcptcTQQISEGPDRITKIKDKLKelqHSLEKLDTAIDELEEimdEFNE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 883 LSQKNSQNQEKLQELNQRLTemLCQKEKEPGNSALEEREQEKFNLKEELERCkVQSSTLVSSLEAELSEVKIQTHIVQQe 962
Cdd:PHA02562 335 QSKKLLELKNKISTNKQSLI--TLVDKAKKVKAAIEELQAEFVDNAEELAKL-QDELDKIVKTKSELVKEKYHRGIVTD- 410
|
....*.
gi 291167747 963 nhLLKD 968
Cdd:PHA02562 411 --LLKD 414
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-975 |
2.15e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 389 DLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKeriaalKNELRKEREQILQQAGKQRLELEQEIEKAKTEENY 468
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK------AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 469 IRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQ 548
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 549 -DQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN----SGGIEPEHGLGSEECNPLNMSIEAElviEQMKEQHHRDIC 623
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHfarrQAAIKAEEARKADELKKAEEKKKAD---EAKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 624 CLRLELEDKVRHYE----------------------KQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQG 681
Cdd:PTZ00121 1306 EAKKKAEEAKKADEakkkaeeakkkadaakkkaeeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 682 QAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQE 761
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 762 LEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQEnsilrnEITTLNEEDSISNLKLGTLNGSQEEM 841
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD------EAKKAEEAKKADEAKKAEEAKKADEA 1539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 842 WQKTETVKQENAavqKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQElnQRLTEMLCQKEKEPGNSALEERE 921
Cdd:PTZ00121 1540 KKAEEKKKADEL---KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 291167747 922 QEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQ 975
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
477-1177 |
2.37e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 477 LKENSRLENELLENAEKLAEYENLTNKLQRNLEnvlaEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQS 556
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKK----SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 557 ELEEYRAQGRVLRLPLKNSPSE--------EVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMK--EQHHRDICCLR 626
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQlkkqqllkQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 627 LELEDKVRHYEKQLDETVVSCKKAQENMKQRHENEThtlekqisdlkneiaeLQGQAAVLKEAHHEATCRHEEEKKQLQV 706
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT----------------LHSQEIHIRDAHEVATSIREISCQQHTL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 707 -----KLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREG-----LQSSAWTEEKVRGLTQELEQFHQEQLTSLVEK 776
Cdd:TIGR00618 378 tqhihTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdlqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 777 HTL---------EKEELRKELLEKHQRELQEGRYESEKLQ--QENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKT 845
Cdd:TIGR00618 458 KIHlqesaqslkEREQQLQTKEQIHLQETRKKAVVLARLLelQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 846 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqkekepgnSALEEREQEKF 925
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ---------DLTEKLSEAED 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 926 NLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLSDFQQKISSvLSYNEKLLKEKEA 1005
Cdd:TIGR00618 609 MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL-LASRQLALQKMQS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1006 LSEELNSCVDKLAKSSLL----EHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQnvNLQMSRMKSDLRVTQQ 1081
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTLlrelETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM--HQARTVLKARTEAHFN 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1082 EKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDH---LMNEEQQLLWQENERLQTMVQNTKAELT 1158
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSdedILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
730
....*....|....*....
gi 291167747 1159 HSREKVRQLESNLLPKHQK 1177
Cdd:TIGR00618 846 EITHQLLKYEECSKQLAQL 864
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
666-798 |
2.56e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 666 EKQISDLKNEiAELQGQAAVL--KEAHHEATCRHEEEKKQLQVKLEE-EKTHLQEKLRLQHEMELkarLTQAQASFERER 742
Cdd:PRK12704 41 KRILEEAKKE-AEAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKlEKRLLQKEENLDRKLEL---LEKREEELEKKE 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 743 EGLQSsawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 798
Cdd:PRK12704 117 KELEQ---KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
678-971 |
2.59e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.51 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 678 ELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEkTHLQEKLRLQHE-MELKArLTQAQASFEREREGLQSSAWTEEKVR 756
Cdd:pfam07111 54 ELEGSQALSQQAELISRQLQELRRLEEEVRLLRE-TSLQQKMRLEAQaMELDA-LAVAEKAGQAEAEGLRAALAGAEMVR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 757 G--------LTQELEQFHQEQLTSLVEKHTLEKEEL--RKELLEKHQRELQEGRYESEK----LQQENSILRNEITTLNE 822
Cdd:pfam07111 132 KnleegsqrELEEIQRLHQEQLSSLTQAHEEALSSLtsKAEGLEKSLNSLETKRAGEAKqlaeAQKEAELLRKQLSKTQE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 823 EDSISNLKLGTLN---GSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQ 899
Cdd:pfam07111 212 ELEAQVTLVESLRkyvGEQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQ 291
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291167747 900 RLTEMLCQKEKEpGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELE 971
Cdd:pfam07111 292 PSDSLEPEFPKK-CRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQ 362
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
666-1243 |
3.14e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 666 EKQISDLKNEI-AELQGQAAVLKEAHHEATCRHEE----EKKQLQVKLEEEKT-HLQEKLRLQhemELKARLTQAQASFE 739
Cdd:COG5022 816 LACIIKLQKTIkREKKLRETEEVEFSLKAEVLIQKfgrsLKAKKRFSLLKKETiYLQSAQRVE---LAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 740 REREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKhQRELQEGRYES-EKLQQENSILRNEIT 818
Cdd:COG5022 893 SISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEE-GPSIEYVKLPElNKLHEVESKLKETSE 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 819 TLNEEDSISNLKLGTLNGSQEEM--WQKTETVKQEN-AAVQKMVENLKK---QISELKIKNQQLDLENTELSQKN----- 887
Cdd:COG5022 972 EYEDLLKKSTILVREGNKANSELknFKKELAELSKQyGALQESTKQLKElpvEVAELQSASKIISSESTELSILKplqkl 1051
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 888 -SQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEV--------KIQTHI 958
Cdd:COG5022 1052 kGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFivaqmiklNLLQEI 1131
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 959 ---VQQENHLLKDELEKMKQLHRCPDLSDFQQKISSVLSYN-EKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ 1034
Cdd:COG5022 1132 skfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPpFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1035 KSWEHQSASLKSQLVASQEKVQNLEDTVqnvnLQMSRMKSDLRVTQQEKEalKQEVMSLHKQLQNAGgKSWAPEIATHPS 1114
Cdd:COG5022 1212 KIFSGWPRGDKLKKLISEGWVPTEYSTS----LKGFNNLNKKFDTPASMS--NEKLLSLLNSIDNLL-SSYKLEEEVLPA 1284
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1115 GLHNQQK---------------RLSWDKLDHL-MNEEQQLLW---QENERLQTMVQNTKaelthSREKVRQLESNLLPKH 1175
Cdd:COG5022 1285 TINSLLQyinvglfnalrtkasSLRWKSATEVnYNSEELDDWcreFEISDVDEELEELI-----QAVKVLQLLKDDLNKL 1359
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1176 QKHLNPSGTMNPTEQEKLSLKREC--------DQFQKEQSPANRKVSQMNSLEQELET--------------IHLENE-- 1231
Cdd:COG5022 1360 DELLDACYSLNPAEIQNLKSRYDPadkennlpKEILKKIEALLIKQELQLSLEGKDETevhlseifseekslISLDRNsi 1439
|
650 660
....*....|....*....|....
gi 291167747 1232 ------------GLKKKQVKLDEQ 1243
Cdd:COG5022 1440 ykeevlsslsalLTKEKIALLDRK 1463
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
428-561 |
3.25e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 428 ERIAALK-NELRKEREQILQQAGKQRLELEQEIEKAKTEENyirdrlalsLKENSRLENELlenAEKLAEYENLTNKLQR 506
Cdd:PRK12704 26 KKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI---------HKLRNEFEKEL---RERRNELQKLEKRLLQ 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 291167747 507 NlENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEY 561
Cdd:PRK12704 94 K-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
698-1096 |
3.37e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 698 EEEKKQLQVKLEEEKTHLQEKLRLQHEMElkaRLTQAQASFEREREGLQssawTEEKVRGLTQELEQFHQEqltslvekh 777
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLE----KLLQLLPLYQELEALEAE--------- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 778 tLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLK-LGTLNGSQEEMWQKTETVKQENAAVQ 856
Cdd:COG4717 141 -LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 857 KMVENLKKQISELKIKNQQLDLENTELSQKN-----------SQNQEKLQELNQRLTEMLC-----------QKEKEPGN 914
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERLKEARLllliaaallalLGLGGSLLSLILTIAGVLFlvlgllallflLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 915 SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENhlLKDELEKMKQLHRCPDLSDFQQKISSVLS 994
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 995 YNE-----------KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEqKSWEHQSASLKSQLVASQEKVQNLEDTVQ 1063
Cdd:COG4717 378 EAGvedeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELA 456
|
410 420 430
....*....|....*....|....*....|....*
gi 291167747 1064 NVNLQMSRMKSD--LRVTQQEKEALKQEVMSLHKQ 1096
Cdd:COG4717 457 ELEAELEQLEEDgeLAELLQELEELKAELRELAEE 491
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
629-829 |
3.89e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 44.61 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 629 LEDKVRHYEKQLDETVVSCKKAQENMKQRHEnethtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKL 708
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQ------LKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 709 EEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKVRGLTQELEQFHQEQltslvEKHTLEKEELRKEL 788
Cdd:pfam05262 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESKASEKEA-----EDKELEAQKKREPV 333
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 291167747 789 LEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNL 829
Cdd:pfam05262 334 AEDLQKTKPQVEAQPTSLNEDAIDSSNPVYGLKVVDPITNL 374
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
751-948 |
4.23e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 751 TEEKVRGLTQELEQFhQEQLTSLVEkhtlEKEELRKELLEKhQRELQEGRYESEKLQQENSILRNEITTLNEE------- 823
Cdd:COG3883 21 KQKELSELQAELEAA-QAELDALQA----ELEELNEEYNEL-QAELEALQAEIDKLQAEIAEAEAEIEERREElgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 824 ---DSISNLKLGTLNGSQ--EEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELN 898
Cdd:COG3883 95 lyrSGGSVSYLDVLLGSEsfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 291167747 899 QRLTEMlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAE 948
Cdd:COG3883 175 AQQAEQ--EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1023-1224 |
4.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1023 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--- 1099
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1100 ---AGGKSWAPEIATHPSGLHNQQKRLSWdkLDHLMNEEQQLLwQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQ 1176
Cdd:COG4942 112 alyRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 291167747 1177 KhlnpsgtmnpTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELE 1224
Cdd:COG4942 189 A----------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
528-776 |
4.76e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 528 LQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLrlplknSPSEEVEANSGGIEpehglgseecnplnmSIEA 607
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV------DLSEEAKLLLQQLS---------------ELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 608 ELVIEQMKeqhhrdicclRLELEDKVRHYEKQLDETVVSCKKAQENmkqrheNETHTLEKQISDLKNEIAELQgqaAVLK 687
Cdd:COG3206 227 QLAEARAE----------LAEAEARLAALRAQLGSGPDALPELLQS------PVIQQLRAQLAELEAELAELS---ARYT 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 688 EAHHEATcRHEEEKKQLQVKLEEEKTHLQEKLRLQHEmELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEqFHQ 767
Cdd:COG3206 288 PNHPDVI-ALRAQIAALRAQLQQEAQRILASLEAELE-ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-VAR 364
|
....*....
gi 291167747 768 EQLTSLVEK 776
Cdd:COG3206 365 ELYESLLQR 373
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
368-1251 |
6.07e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERR---NEYNLRKLDEEYKERIAALKNELRK---ER 441
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQlndLYHNHQRTVREKERELVDCQRELEKlnkER 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 442 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLE-NAEKLAEYENLTNKLQRNLENVLAEKFGDLD 520
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFErGPFSERQIKNFHTLVIERQEDEAKTAAQLCA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 521 PSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRlPLKNSPSEEVEANSGGIEPEHGLGSEECNP 600
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILELDQELRKAERELSKAEKNS 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 601 LNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQE-----NMKQRHENET------------ 662
Cdd:TIGR00606 495 LTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKdeqirKIKSRHSDELtsllgyfpnkkq 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 663 -----HTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcRHEEEKKQLQVKLEEEK-------THLQEKL-RLQHEMEL-- 727
Cdd:TIGR00606 575 ledwlHSKSKEINQTRDRLAKLNKELASLEQNKNHI--NNELESKEEQLSSYEDKlfdvcgsQDEESDLeRLKEEIEKss 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 728 --KARLTQAQASFEREREGL---------------QSSAWTEEKVRGLTQELEQF--HQEQLTSLVEKHTLEKEELRKeL 788
Cdd:TIGR00606 653 kqRAMLAGATAVYSQFITQLtdenqsccpvcqrvfQTEAELQEFISDLQSKLRLApdKLKSTESELKKKEKRRDEMLG-L 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 789 LEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQE--EMWQKTETVKQEnaaVQKMVENLKKQI 866
Cdd:TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEEsaKVCLTDVTIMER---FQMELKDVERKI 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 867 SELKIKNQQLDLENT--ELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCKVQSSTLVSS 944
Cdd:TIGR00606 809 AQQAAKLQGSDLDRTvqQVNQEKQEKQHELDTVVSKIELN---------RKLIQDQQEQIQHLKSKTNELKSEKLQIGTN 879
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 945 LeaelsevkiqthivQQENHLLKDELEKMKQLHRC-PDLSDFQQKISSVLSYNEKLLKEKEALSEElnscvdKLAKSSLL 1023
Cdd:TIGR00606 880 L--------------QRRQQFEEQLVELSTEVQSLiREIKDAKEQDSPLETFLEKDQQEKEELISS------KETSNKKA 939
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1024 EHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvnlQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAggk 1103
Cdd:TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKET------ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ--- 1010
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1104 swapeiathpsglhNQQKRLSWDKLDhLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSG 1183
Cdd:TIGR00606 1011 --------------KIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALG 1075
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 291167747 1184 TMNPTEQEKLSLKRECDQFQKEQSPANRKVSQMnsleqELETIHLENEGLKKKQVKLDEQLMEMQHLR 1251
Cdd:TIGR00606 1076 RQKGYEKEIKHFKKELREPQFRDAEEKYREMMI-----VMRTTELVNKDLDIYYKTLDQAIMKFHSMK 1138
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
370-1017 |
7.14e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 370 RHLLERVDQVVREKEKLRSDLDKAEKLK---SLMASEVDDHHAAIERR--------NEYN--LRKLDEEYKERIAALKNE 436
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNTLESAElrlSHLHFGYKSDETLIASRqeerqetsAELNqlLRTLDDQWKEKRDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 437 LRKEREQI------LQQAGKQRLELEQE-IEKAKTEENYIrDRLALSLKENSRLENELLENAEKL-AEYENLTNKLQRNL 508
Cdd:pfam12128 310 LSAADAAVakdrseLEALEDQHGAFLDAdIETAAADQEQL-PSWQSELENLEERLKALTGKHQDVtAKYNRRRSKIKEQN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 509 ENVLAEKFGDLDPSSAEFFLQeerLTQMRNEYERQCRVLQDQVDELQSELEEyRAQGRVLRLPlknspSEEVEANSGGIE 588
Cdd:pfam12128 389 NRDIAGIKDKLAKIREARDRQ---LAVAEDDLQALESELREQLEAGKLEFNE-EEYRLKSRLG-----ELKLRLNQATAT 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 589 PEHGLGSE----ECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHT 664
Cdd:pfam12128 460 PELLLQLEnfdeRIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHF 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 665 LEKQISDLKNEIAELQGQAAVLK-EAHHEATCRHEEEKKQL-QVKLEEEKthLQEKLRLQHEMELKARLTQAQASFERER 742
Cdd:pfam12128 540 LRKEAPDWEQSIGKVISPELLHRtDLDPEVWDGSVGGELNLyGVKLDLKR--IDVPEWAASEEELRERLDKAEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 743 EGL--------QSSAWTEEKVRGLTQELEQFHQEQLTslVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILR 814
Cdd:pfam12128 618 EKQaaaeeqlvQANGELEKASREETFARTALKNARLD--LRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLD 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 815 NEITTLNEEDSISNLKLGTlngSQEEMWQktETVKQENAAVQKMVENLKKQISELKIKNQQLDLEN-TELSQK--NSQNQ 891
Cdd:pfam12128 696 KKHQAWLEEQKEQKREART---EKQAYWQ--VVEGALDAQLALLKAAIAARRSGAKAELKALETWYkRDLASLgvDPDVI 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 892 EKLQELNQRLTEMLCQKEKEpGNSALEERE-------QEKFNLKEELERCKVQSSTLVSSLEAELSEVKI---------- 954
Cdd:pfam12128 771 AKLKREIRTLERKIERIAVR-RQEVLRYFDwyqetwlQRRPRLATQLSNIERAISELQQQLARLIADTKLrraklemerk 849
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291167747 955 ----QTHIVQQENHLLKDELEKMKQLHRCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKL 1017
Cdd:pfam12128 850 asekQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHF 916
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
721-1032 |
7.60e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 721 LQHEMELKARltQAQASFER-EREGLQSSawTEEKVRGLtqeleqfhqEQLTSLVEKHTLEKEELRKE--LLEKHQRELQ 797
Cdd:pfam17380 278 VQHQKAVSER--QQQEKFEKmEQERLRQE--KEEKAREV---------ERRRKLEEAEKARQAEMDRQaaIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 798 EGRYESEKLQQENSILRNEiTTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMveNLKKQISELKIKNQQLD 877
Cdd:pfam17380 345 ERERELERIRQEERKRELE-RIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKV--KILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 878 LENTELSQKNSQNQE---------------KLQELN-QRLTEMLCQKEKEPGNSALE-EREQEKFNLKEELERckvqsst 940
Cdd:pfam17380 422 MEQIRAEQEEARQREvrrleeeraremervRLEEQErQQQVERLRQQEEERKRKKLElEKEKRDRKRAEEQRR------- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 941 lvSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKS 1020
Cdd:pfam17380 495 --KILEKELEERKQAMIEEERKRKLLEKEMEERQK----AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
330
....*....|..
gi 291167747 1021 SLLEHRIATMKQ 1032
Cdd:pfam17380 569 EAMEREREMMRQ 580
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
656-788 |
9.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 656 QRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ-------VKLEEEKTHLQEKL--RLQHEME 726
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggdrlEQLEREIERLERELeeRERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291167747 727 LKARLTQAQASFEREREGL--QSSAWTEEkVRGLTQELEQFHQEQLTSLVEKHTLEKE--ELRKEL 788
Cdd:COG4913 364 LEALLAALGLPLPASAEEFaaLRAEAAAL-LEALEEELEALEEALAEAEAALRDLRRElrELEAEI 428
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
844-1243 |
1.22e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 844 KTETVKQENAaVQKMVENLKKQISELKIKNQQL-DLENTELSQKNSQNQ--EKLQELNQRLTEMLCQKEKEpgNSALEER 920
Cdd:TIGR04523 25 KNIANKQDTE-EKQLEKKLKTIKNELKNKEKELkNLDKNLNKDEEKINNsnNKIKILEQQIKDLNDKLKKN--KDKINKL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 921 EQEKFNLKEELERCKVQSSTL---VSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcpDLSDFQQKISSVLSYNE 997
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQKNKLeveLNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNN-----KYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 998 KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSwehqsasLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLR 1077
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS-------LESQISELKKQNNQLKDNIEKKQQEINEKTTEIS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1078 VTQQEKEALKQEVMSLHKQLQNAGGKSwapeiathpsglhNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAEL 1157
Cdd:TIGR04523 250 NTQTQLNQLKDEQNKIKKQLSEKQKEL-------------EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSEL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1158 THSREKVRQLESNLLPKHQKhlnpsgtMNPTEQEKLSLKRECDQFQKEQSPANRkvsQMNSLEQELETIHLENEGLKKKQ 1237
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQNNKI-------ISQLNEQISQLKKELTNSESENSEKQR---ELEEKQNEIEKLKKENQSYKQEI 386
|
....*.
gi 291167747 1238 VKLDEQ 1243
Cdd:TIGR04523 387 KNLESQ 392
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
772-933 |
1.24e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 772 SLVEKHTLEKEELRKELLEKHQRELQEGRYESE-KLQQENSILRNEIttlnEEDSISnlklgtlngsqeemwQKTETVKQ 850
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALlEAKEEIHKLRNEF----EKELRE---------------RRNELQKL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 851 ENAAVQKmVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEE 930
Cdd:PRK12704 88 EKRLLQK-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
...
gi 291167747 931 LER 933
Cdd:PRK12704 167 ARH 169
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
659-1104 |
1.33e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 659 ENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKqLQVKLEEEKthLQEKLRLQHEMELKARLTQAQASF 738
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELE--KELESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 739 EREREGLQSsawTEEKVRGLTQeleqfhqeqltslVEKHTLEKEELrKELLEKHQRELQEGRYESEKLQQENSILRNEIT 818
Cdd:PRK03918 269 EELKKEIEE---LEEKVKELKE-------------LKEKAEEYIKL-SEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 819 TLNEEDSisnlKLGTLNGSQEEMWQKTETVK------QENAAVQKMVENLKKQISELKIKNQQLDLEntELSQKNSQNQE 892
Cdd:PRK03918 332 ELEEKEE----RLEELKKKLKELEKRLEELEerhelyEEAKAKKEELERLKKRLTGLTPEKLEKELE--ELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 893 KLQELNQRLTEMlcQKEKEPGNSALEEreqekfnLKEELERCKVQSSTLVSSLEAEL-SEVKIQTHIVQQENHLLKDELE 971
Cdd:PRK03918 406 EISKITARIGEL--KKEIKELKKAIEE-------LKKAKGKCPVCGRELTEEHRKELlEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 972 KMKQLHRcpdlsdfqqKISSVLSYNEKLLKEKEaLSEELNScvdklAKSSLLEHRIATMKQEQKSWEhqsaSLKSQLVAS 1051
Cdd:PRK03918 477 KLRKELR---------ELEKVLKKESELIKLKE-LAEQLKE-----LEEKLKKYNLEELEKKAEEYE----KLKEKLIKL 537
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 291167747 1052 QEKVQNLEDTVQNVNLqmsrMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKS 1104
Cdd:PRK03918 538 KGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGFES 586
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
316-568 |
1.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 316 EEGIENSQEILKALDFSLDgninltELTLALENEllvtknsihQAALASFKAEIRHllERVDQVVREKEKLRSDLDKAEK 395
Cdd:TIGR02169 750 EQEIENVKSELKELEARIE------ELEEDLHKL---------EEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEA 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 396 lkslMASEVDDHHAAIERRNEYnLRKLDEEYKERIAALKNElRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAL 475
Cdd:TIGR02169 813 ----RLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 476 SLKENSRLENELLENAEKLAEYE---NLTNKLQRNLENVLAEKFGDL---------DPSSAEFFLQEERLTQMRNEYERQ 543
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEALEEELseiedpkgeDEEIPEEELSLEDVQAELQRVEEE 966
|
250 260 270
....*....|....*....|....*....|..
gi 291167747 544 CRVLQ-------DQVDELQSELEEYRAQGRVL 568
Cdd:TIGR02169 967 IRALEpvnmlaiQEYEEVLKRLDELKEKRAKL 998
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
665-914 |
1.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 665 LEKQISDLKNEIAELQGQAAVLKEAHHEATcrHEEEKKQLQVKLEEekthLQEKLRlqhemELKARLTQAQASFEREREG 744
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD--LSEEAKLLLQQLSE----LESQLA-----EARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 745 LQSSAWTEEKVrgLTQELEQFHQEQLTSLvekhTLEKEELRKELLEKHqrelqegryesEKLQQensiLRNEITTLNEEd 824
Cdd:COG3206 249 LGSGPDALPEL--LQSPVIQQLRAQLAEL----EAELAELSARYTPNH-----------PDVIA----LRAQIAALRAQ- 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 825 sisnlklgtlngSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQ---NQEKLQELNQRL 901
Cdd:COG3206 307 ------------LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREvevARELYESLLQRL 374
|
250
....*....|...
gi 291167747 902 TEMLCQKEKEPGN 914
Cdd:COG3206 375 EEARLAEALTVGN 387
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
782-1089 |
1.86e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 782 EELRKELLEKHQRELQE---GRYESEKLQQENSILR--------NEITTLNEEDSISNL-----KLGTLNGSQEEMWQKT 845
Cdd:COG5022 737 EDMRDAKLDNIATRIQRairGRYLRRRYLQALKRIKkiqviqhgFRLRRLVDYELKWRLfiklqPLLSLLGSRKEYRSYL 816
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 846 ETVKQenaaVQKMVENLKKQISELKiknQQLDLENTELSQK---NSQNQEKLQELNQRLTEMLCQKEkepgnsaLEEREQ 922
Cdd:COG5022 817 ACIIK----LQKTIKREKKLRETEE---VEFSLKAEVLIQKfgrSLKAKKRFSLLKKETIYLQSAQR-------VELAER 882
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 923 EKFNLKEELERckVQSSTLVSS-LEAELSEVKIQTHIVQQENHLLKDELEKM-KQLHRCPDLSDFQQKISSVLSYNEKLL 1000
Cdd:COG5022 883 QLQELKIDVKS--ISSLKLVNLeLESEIIELKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPSIEYVKLPELNKLH 960
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1001 KEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvNLQMSRMKSDLRVTQ 1080
Cdd:COG5022 961 EVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL----PVEVAELQSASKIIS 1036
|
....*....
gi 291167747 1081 QEKEALKQE 1089
Cdd:COG5022 1037 SESTELSIL 1045
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
754-1063 |
2.05e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.53 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 754 KVRGLTQELEQFhQEQLTSLVEKHTLEKEELRKELLEKHQRELQE---GRYESEKLQQENSILRNEITTLNEEDSISNLK 830
Cdd:PLN03229 430 PVRELEGEVEKL-KEQILKAKESSSKPSELALNEMIEKLKKEIDLeytEAVIAMGLQERLENLREEFSKANSQDQLMHPV 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 831 LGtlngsqeemwQKTETVKQE---NAAVQKMVENLKKQISELKIKNqqldlENTELSQKNSQNQEKLQELNQRLTEMLCQ 907
Cdd:PLN03229 509 LM----------EKIEKLKDEfnkRLSRAPNYLSLKYKLDMLNEFS-----RAKALSEKKSKAEKLKAEINKKFKEVMDR 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 908 KE-KEPGNSALEEREQEKFN--------LKEELERCKvqsstlvSSLEAELSEV----KIQTHIVQQENhllkdelekMK 974
Cdd:PLN03229 574 PEiKEKMEALKAEVASSGASsgdeldddLKEKVEKMK-------KEIELELAGVlksmGLEVIGVTKKN---------KD 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 975 QLHRCPDlSDFQQKIssvlsynekllkekEALSEELNSCVDKLAKSSLLEHRIATMKQEqkswehQSASLKSQLVASQEK 1054
Cdd:PLN03229 638 TAEQTPP-PNLQEKI--------------ESLNEEINKKIERVIRSSDLKSKIELLKLE------VAKASKTPDVTEKEK 696
|
....*....
gi 291167747 1055 VQNLEDTVQ 1063
Cdd:PLN03229 697 IEALEQQIK 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
424-564 |
2.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 424 EEYKERIAALKNELrKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 503
Cdd:COG4942 23 AEAEAELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291167747 504 LQRNLENVL--AEKFGDLDPS----SAEFFLQEERLTQMRNEYERQcrvLQDQVDELQSELEEYRAQ 564
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
839-1171 |
2.15e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 839 EEMWQKTETVKQENAAVQKMVENLKKqisELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcQKEKEPGNSALE 918
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKE---RYKRDREQWERQRRELESRVAELKEELRQSREKHEELE-EKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 919 EREQEKFNLKEELERckvqsstlvsslEAELSEVKIQTHIVQQENHLLKDELEKMKqlhrcpdlsDFQQKISSvlsynek 998
Cdd:pfam07888 113 LSEEKDALLAQRAAH------------EARIRELEEDIKTLTQRVLERETELERMK---------ERAKKAGA------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 999 LLKEKEALSEELNScvdKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRV 1078
Cdd:pfam07888 165 QRKEEEAERKQLQA---KLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 1079 TQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELT 1158
Cdd:pfam07888 242 LQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIE 321
|
330
....*....|...
gi 291167747 1159 HSREKVRQLESNL 1171
Cdd:pfam07888 322 KLSAELQRLEERL 334
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
367-467 |
3.50e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 367 AEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmASEVDDHHAAIERRneynLRKLDEEYKERIAALkNELRKEREQILQ 446
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEE----LEALKARWEAEKELI-EEIQELKEELEQ 482
|
90 100
....*....|....*....|.
gi 291167747 447 QAGKqRLELEQEIEKAKTEEN 467
Cdd:COG0542 483 RYGK-IPELEKELAELEEELA 502
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
789-971 |
4.47e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 789 LEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE 868
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 869 LKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSL 945
Cdd:COG4372 127 LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLqeeLAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAE 206
|
170 180
....*....|....*....|....*.
gi 291167747 946 EAELSEVKIQTHIVQQENHLLKDELE 971
Cdd:COG4372 207 KLIESLPRELAEELLEAKDSLEAKLG 232
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
466-1092 |
4.58e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 466 ENYIRDRLALSLKENSRLENELLENAEKlaEYENLTNKLQrnlenvlAEKFGDLDPSSAEFFLQEERLTqMRNEYERQCR 545
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLS-------HLHFGYKSDETLIASRQEERQE-TSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 546 VLQDQVDELQSEL-----------EEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEeCNPLNMSIEAElvieqm 614
Cdd:pfam12128 294 TLDDQWKEKRDELngelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE-LENLEERLKAL------ 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 615 kEQHHRDIcclrleledkVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEiaeLQGQAAVLKEAHHEAT 694
Cdd:pfam12128 367 -TGKHQDV----------TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD---LQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 695 CRHEEEKKQLQVKLEEEKTHL-------QEKLRLQHEMEL--KARLTQAQASFERER---EGLQSSAWTEEKVRGLTQEl 762
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLnqatatpELLLQLENFDERieRAREEQEAANAEVERlqsELRQARKRRDQASEALRQA- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 763 EQFHQEQLTSLVEKHTLEKEElRKELLEKHQRELQEGRYESEKLQQENSILRNEIT-TLNEEDSISNLKLGTLN------ 835
Cdd:pfam12128 512 SRRLEERQSALDELELQLFPQ-AGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDpEVWDGSVGGELNLYGVKldlkri 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 836 ------GSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNqrltemlcqke 909
Cdd:pfam12128 591 dvpewaASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLF----------- 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 910 kepgnsalEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLSDFQQKI 989
Cdd:pfam12128 660 --------DEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 990 SSVlsyNEKLLKEKEALSEELNSC----VDKLAKSSLLEHRIATMKQEQKSWEH--QSASLKSQLVASQEKVQN------ 1057
Cdd:pfam12128 732 ALL---KAAIAARRSGAKAELKALetwyKRDLASLGVDPDVIAKLKREIRTLERkiERIAVRRQEVLRYFDWYQetwlqr 808
|
650 660 670
....*....|....*....|....*....|....*...
gi 291167747 1058 ---LEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMS 1092
Cdd:pfam12128 809 rprLATQLSNIERAISELQQQLARLIADTKLRRAKLEM 846
|
|
| PRK01194 |
PRK01194 |
V-type ATP synthase subunit E; Provisional |
411-504 |
4.85e-03 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 100810 [Multi-domain] Cd Length: 185 Bit Score: 39.52 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 411 IERRNEYNLRKLDEEYKERIAALKNElRKEREQILQQAGKQRLELE------QEIEKAKTE-ENYIRDRLALSLKENSRL 483
Cdd:PRK01194 10 IEKSREEKKKEINDEYSKRIEKLEKE-CDSKIQSIKEYYEKKMRAEisrlkkSIIDKANIEaRSIKREKRREILKDYLDI 88
|
90 100
....*....|....*....|.
gi 291167747 484 ENELLENAEKLAEYENLTNKL 504
Cdd:PRK01194 89 AYEHLMNITKSKEYDSILNKM 109
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
431-689 |
5.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 431 AALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRNLEN 510
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-------ALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 511 VlaekfgdldpssaefflqEERLTQMRNEYERQCRVLQDQVDELQseleeyrAQGRVLRLPLKNSPSEEVEANSGGIEPE 590
Cdd:COG4942 88 L------------------EKEIAELRAELEAQKEELAELLRALY-------RLGRQPPLALLLSPEDFLDAVRRLQYLK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 591 HglgseecnpLNMSIEAElvIEQMKEQHhRDICCLRLELEDKVRHYEKQLDEtVVSCKKAQENMKQRHENETHTLEKQIS 670
Cdd:COG4942 143 Y---------LAPARREQ--AEELRADL-AELAALRAELEAERAELEALLAE-LEEERAALEALKAERQKLLARLEKELA 209
|
250
....*....|....*....
gi 291167747 671 DLKNEIAELQGQAAVLKEA 689
Cdd:COG4942 210 ELAAELAELQQEAEELEAL 228
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
662-900 |
5.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 662 THTLEKqiSDLKNEIAELQGQAAVLKEAHHEATcRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFERE 741
Cdd:COG4913 215 EYMLEE--PDTFEAADALVEHFDDLERAHEALE-DAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 742 REglqssawtEEKVRGLTQELEQFHQEqltslVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLN 821
Cdd:COG4913 292 LL--------EAELEELRAELARLEAE-----LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 822 E-----EDSISNLKLgTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELsqknsqnQEKLQE 896
Cdd:COG4913 359 RrrarlEALLAALGL-PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL-------EAEIAS 430
|
....
gi 291167747 897 LNQR 900
Cdd:COG4913 431 LERR 434
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-506 |
5.58e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLmasEVDDH--------HAAIERRNEYNLRKLD-----------EEYKE 428
Cdd:PRK05771 101 EIKELEEEISELENEIKELEQEIERLEPWGNF---DLDLSlllgfkyvSVFVGTVPEDKLEELKlesdvenveyiSTDKG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 429 RIAAL---KNELRKEREQILQQAGKQRLELeQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAE-----YENL 500
Cdd:PRK05771 178 YVYVVvvvLKELSDEVEEELKKLGFERLEL-EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEellalYEYL 256
|
....*.
gi 291167747 501 TNKLQR 506
Cdd:PRK05771 257 EIELER 262
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
843-1097 |
6.34e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 843 QKTETVKQENAAVQKMVENLKKQISELKiknqQLDLENTELSQknSQNQEKLQElnqrltemlcQKEKEPGNSALEEREQ 922
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKLKEQILKAK----ESSSKPSELAL--NEMIEKLKK----------EIDLEYTEAVIAMGLQ 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 923 EKF-NLKEELERCKVQSSTLVSSLEAELSEVK--IQTHIVQQENHL-LKDELEKMKQLHRCPDLSDFQQKissvlsynek 998
Cdd:PLN03229 486 ERLeNLREEFSKANSQDQLMHPVLMEKIEKLKdeFNKRLSRAPNYLsLKYKLDMLNEFSRAKALSEKKSK---------- 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 999 llkeKEALSEELNSCVDKLAKSSLLEHRIATMKQE-QKSWEHQSASLKSQLVASQEKVQN-----LEDTVQNVNLQMSRM 1072
Cdd:PLN03229 556 ----AEKLKAEINKKFKEVMDRPEIKEKMEALKAEvASSGASSGDELDDDLKEKVEKMKKeieleLAGVLKSMGLEVIGV 631
|
250 260
....*....|....*....|....*..
gi 291167747 1073 KSDLRVTQQEK--EALKQEVMSLHKQL 1097
Cdd:PLN03229 632 TKKNKDTAEQTppPNLQEKIESLNEEI 658
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
704-820 |
6.49e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 40.25 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 704 LQVKLEEEKTHLQ-EKLRLQHEMELKARLTQAQASfEREREGLQSSAWTEEKvrgLTQELEQFHQEQLTSLVEKHTLEKE 782
Cdd:cd16269 176 LQSKEAEAEAILQaDQALTEKEKEIEAERAKAEAA-EQERKLLEEQQRELEQ---KLEDQERSYEEHLRQLKEKMEEERE 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 291167747 783 ELRKELLEKHQRELQEGRYESEK-LQQENSILRNEITTL 820
Cdd:cd16269 252 NLLKEQERALESKLKEQEALLEEgFKEQAELLQEEIRSL 290
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
368-555 |
7.97e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 368 EIRHLLERVDQvvrekekLRSDLDKAEKLkslmaseVDDHHAAIERRNEYNLR-KLDEEYKERIAALKNELRKEREQILQ 446
Cdd:COG3096 506 SQQALAQRLQQ-------LRAQLAELEQR-------LRQQQNAERLLEEFCQRiGQQLDAAEELEELLAELEAQLEELEE 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 447 QA---GKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLEnvlaekfgdldpss 523
Cdd:COG3096 572 QAaeaVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-------------- 637
|
170 180 190
....*....|....*....|....*....|..
gi 291167747 524 aefflQEERLTQMRNEYERQCRVLQDQVDELQ 555
Cdd:COG3096 638 -----REREATVERDELAARKQALESQIERLS 664
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
840-1070 |
9.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 840 EMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEkLQELNQRltemlcqkekepgnsaLEE 919
Cdd:PRK11281 70 ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLS-LRQLESR----------------LAQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 920 REQEKFNLKEELERCKVQSSTLVSSLE---AELSEVKIQThivQQENHLLKDELEKMKQLHrcPDLSDF----QQKISSV 992
Cdd:PRK11281 133 TLDQLQNAQNDLAEYNSQLVSLQTQPEraqAALYANSQRL---QQIRNLLKGGKVGGKALR--PSQRVLlqaeQALLNAQ 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291167747 993 LSYNEKLLKEKEALSEELNSCVDKL-AKSSLLEHRIATMkqeqkswehQSASLKSQLVASQEKV---QNLEDTVQ----- 1063
Cdd:PRK11281 208 NDLQRKSLEGNTQLQDLLQKQRDYLtARIQRLEHQLQLL---------QEAINSKRLTLSEKTVqeaQSQDEAARiqanp 278
|
250
....*....|...
gi 291167747 1064 ------NVNLQMS 1070
Cdd:PRK11281 279 lvaqelEINLQLS 291
|
|
| |
