exosome complex component RRP40 isoform 1 [Homo sapiens]
exosome complex RNA-binding protein( domain architecture ID 16789758)
exosome complex RNA-binding protein such as exosome complex component RRP40, a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events
List of domain hits
Name | Accession | Description | Interval | E-value | |||
S1_Rrp40 | cd05790 | S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ... |
108-193 | 1.23e-53 | |||
S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". : Pssm-ID: 240216 Cd Length: 86 Bit Score: 168.59 E-value: 1.23e-53
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KH-I_Rrp40 | cd22526 | type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar ... |
196-273 | 1.07e-36 | |||
type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins; Rrp40, also called exosome component 3 (EXOSC3), or ribosomal RNA-processing protein 40, is a non-catalytic component of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Mutations of EXOSC3 gene are associated with neurological diseases. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif. : Pssm-ID: 411954 [Multi-domain] Cd Length: 78 Bit Score: 124.94 E-value: 1.07e-36
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Name | Accession | Description | Interval | E-value | ||||
S1_Rrp40 | cd05790 | S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ... |
108-193 | 1.23e-53 | ||||
S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Pssm-ID: 240216 Cd Length: 86 Bit Score: 168.59 E-value: 1.23e-53
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KH-I_Rrp40 | cd22526 | type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar ... |
196-273 | 1.07e-36 | ||||
type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins; Rrp40, also called exosome component 3 (EXOSC3), or ribosomal RNA-processing protein 40, is a non-catalytic component of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Mutations of EXOSC3 gene are associated with neurological diseases. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif. Pssm-ID: 411954 [Multi-domain] Cd Length: 78 Bit Score: 124.94 E-value: 1.07e-36
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KH_6 | pfam15985 | KH domain; KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause ... |
197-245 | 8.96e-14 | ||||
KH domain; KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. Pssm-ID: 464959 [Multi-domain] Cd Length: 47 Bit Score: 63.99 E-value: 8.96e-14
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PRK04163 | PRK04163 | exosome complex protein Rrp4; |
108-261 | 2.47e-05 | ||||
exosome complex protein Rrp4; Pssm-ID: 235233 [Multi-domain] Cd Length: 235 Bit Score: 44.50 E-value: 2.47e-05
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Rrp4 | COG1097 | Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Intracellular ... |
108-261 | 1.16e-03 | ||||
Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Intracellular trafficking, secretion, and vesicular transport]; Pssm-ID: 440714 [Multi-domain] Cd Length: 234 Bit Score: 39.45 E-value: 1.16e-03
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Name | Accession | Description | Interval | E-value | ||||
S1_Rrp40 | cd05790 | S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ... |
108-193 | 1.23e-53 | ||||
S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Pssm-ID: 240216 Cd Length: 86 Bit Score: 168.59 E-value: 1.23e-53
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KH-I_Rrp40 | cd22526 | type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar ... |
196-273 | 1.07e-36 | ||||
type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins; Rrp40, also called exosome component 3 (EXOSC3), or ribosomal RNA-processing protein 40, is a non-catalytic component of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Mutations of EXOSC3 gene are associated with neurological diseases. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif. Pssm-ID: 411954 [Multi-domain] Cd Length: 78 Bit Score: 124.94 E-value: 1.07e-36
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S1_Rrp4_like | cd04454 | S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in ... |
108-193 | 1.73e-34 | ||||
S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Pssm-ID: 239901 [Multi-domain] Cd Length: 82 Bit Score: 119.58 E-value: 1.73e-34
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KH-I_Rrp4_Rrp40 | cd22445 | type I K homology (KH) RNA-binding domain found in exosome complex components Rrp4, Rrp40 and ... |
197-273 | 4.71e-34 | ||||
type I K homology (KH) RNA-binding domain found in exosome complex components Rrp4, Rrp40 and similar proteins; The family includes two ribosomal RNA-processing proteins, Rrp4 and Rrp40. They are non-catalytic components of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Eukaryotic Rrp4 and Rrp40 contain a divergent KH domain that lacks the RNA-binding GXXG motif. Pssm-ID: 411873 [Multi-domain] Cd Length: 78 Bit Score: 118.52 E-value: 4.71e-34
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KH_6 | pfam15985 | KH domain; KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause ... |
197-245 | 8.96e-14 | ||||
KH domain; KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. Pssm-ID: 464959 [Multi-domain] Cd Length: 47 Bit Score: 63.99 E-value: 8.96e-14
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PRK04163 | PRK04163 | exosome complex protein Rrp4; |
108-261 | 2.47e-05 | ||||
exosome complex protein Rrp4; Pssm-ID: 235233 [Multi-domain] Cd Length: 235 Bit Score: 44.50 E-value: 2.47e-05
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S1_Rrp4 | cd05789 | S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ... |
108-177 | 1.51e-04 | ||||
S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Pssm-ID: 240215 [Multi-domain] Cd Length: 86 Bit Score: 39.45 E-value: 1.51e-04
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Rrp4 | COG1097 | Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Intracellular ... |
108-261 | 1.16e-03 | ||||
Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Intracellular trafficking, secretion, and vesicular transport]; Pssm-ID: 440714 [Multi-domain] Cd Length: 234 Bit Score: 39.45 E-value: 1.16e-03
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Blast search parameters | ||||
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