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Conserved domains on  [gi|54111428|ref|NP_057087|]
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WD repeat domain phosphoinositide-interacting protein 2 isoform b [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 9.51e-13

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 69.55  E-value: 9.51e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAYpGSATiGEVQVFDTINLRAANMIPAHDSPLAALAFDASGT 197
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLAS-GSDD-GTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGK 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 198 KLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLETvkekpPEEPTTWTGYF 277
Cdd:COG2319 218 LLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLAT-----GELLRTLTGHS 288

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 278 GKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLATIQKIPRLLVGAADGYLYMYN 340
Cdd:COG2319 289 GGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLWD 358


                ..
gi 54111428 341 LD 342
Cdd:COG2319 359 LA 360
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 9.51e-13

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 69.55  E-value: 9.51e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAYpGSATiGEVQVFDTINLRAANMIPAHDSPLAALAFDASGT 197
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLAS-GSDD-GTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGK 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 198 KLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLETvkekpPEEPTTWTGYF 277
Cdd:COG2319 218 LLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLAT-----GELLRTLTGHS 288

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 278 GKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLATIQKIPRLLVGAADGYLYMYN 340
Cdd:COG2319 289 GGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLWD 358


                ..
gi 54111428 341 LD 342
Cdd:COG2319 359 LA 360
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 13-265 3.71e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 54.65  E-value: 3.71e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428  13 GQLLFANFNQDNTSLAVGSKSGykffSLSSVDKLEQIYECTDTE-DVCIVERLFSSSLVAIVSLKAPRKLKVchFKKGTE 91
Cdd:cd00200  10 GGVTCVAFSPDGKLLATGSGDG----TIKVWDLETGELLRTLKGhTGPVRDVAASADGTYLASGSSDKTIRL--WDLETG 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428  92 ICNYSY---SNTILAVKLNRQRLIVC---LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSATIGE 165
Cdd:cd00200  84 ECVRTLtghTSYVSSVAFSPDGRILSsssRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVA--SSSQDGT 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 166 VQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFRRgvkRCVSICSLAFSMDGMFL 245
Cdd:cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLL 234

                       250       260
                ....*....|....*....|
gi 54111428 246 SASSNTETVHIFKLETVKEK 265
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECV 254
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 9.51e-13

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 69.55  E-value: 9.51e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAYpGSATiGEVQVFDTINLRAANMIPAHDSPLAALAFDASGT 197
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLAS-GSDD-GTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGK 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 198 KLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLETvkekpPEEPTTWTGYF 277
Cdd:COG2319 218 LLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLAT-----GELLRTLTGHS 288

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 278 GKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLATIQKIPRLLVGAADGYLYMYN 340
Cdd:COG2319 289 GGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLWD 358


                ..
gi 54111428 341 LD 342
Cdd:COG2319 359 LA 360
WD40 COG2319
WD40 repeat [General function prediction only];
121-280 1.68e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 65.70  E-value: 1.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 121 IHNIRDMKVLHTIRetpPNPAGLCALSINNDNCYLAYpGSATiGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLA 200
Cdd:COG2319 230 LWDLATGKLLRTLT---GHSGSVRSVAFSPDGRLLAS-GSAD-GTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLA 304

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 201 TASEKGTViRVFSIPEGQKLFEFRRGVKRcvsICSLAFSMDGMFLSASSNTETVHIFKLETvkekpPEEPTTWTGYFGKV 280
Cdd:COG2319 305 SGSDDGTV-RLWDLATGKLLRTLTGHTGA---VRSVAFSPDGKTLASGSDDGTVRLWDLAT-----GELLRTLTGHTGAV 375
WD40 COG2319
WD40 repeat [General function prediction only];
118-261 7.07e-10

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 60.70  E-value: 7.07e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 118 SLYIHNIRDMKVLHTIRetpPNPAGLCALSINNDNCYLAYpGSATiGEVQVFDTINLRAANMIPAHDSPLAALAFDASGT 197
Cdd:COG2319 269 TVRLWDLATGELLRTLT---GHSGGVNSVAFSPDGKLLAS-GSDD-GTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGK 343

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 54111428 198 KLATASEKGTViRVFSIPEGQKLFEFRRGVKRcvsICSLAFSMDGMFLSASSNTETVHIFKLET 261
Cdd:COG2319 344 TLASGSDDGTV-RLWDLATGELLRTLTGHTGA---VTSVAFSPDGRTLASGSADGTVRLWDLAT 403
WD40 COG2319
WD40 repeat [General function prediction only];
164-280 1.77e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.15  E-value: 1.77e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 164 GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTViRVFSIPEGQKLFEFrRGVKRCVSicSLAFSMDGM 243
Cdd:COG2319 100 GTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTV-RLWDLATGKLLRTL-TGHSGAVT--SVAFSPDGK 175

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 54111428 244 FLSASSNTETVHIFKLETvkekpPEEPTTWTGYFGKV 280
Cdd:COG2319 176 LLASGSDDGTVRLWDLAT-----GKLLRTLTGHTGAV 207
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 13-265 3.71e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 54.65  E-value: 3.71e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428  13 GQLLFANFNQDNTSLAVGSKSGykffSLSSVDKLEQIYECTDTE-DVCIVERLFSSSLVAIVSLKAPRKLKVchFKKGTE 91
Cdd:cd00200  10 GGVTCVAFSPDGKLLATGSGDG----TIKVWDLETGELLRTLKGhTGPVRDVAASADGTYLASGSSDKTIRL--WDLETG 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428  92 ICNYSY---SNTILAVKLNRQRLIVC---LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSATIGE 165
Cdd:cd00200  84 ECVRTLtghTSYVSSVAFSPDGRILSsssRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVA--SSSQDGT 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 166 VQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFRRgvkRCVSICSLAFSMDGMFL 245
Cdd:cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLL 234

                       250       260
                ....*....|....*....|
gi 54111428 246 SASSNTETVHIFKLETVKEK 265
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECV 254
WD40 COG2319
WD40 repeat [General function prediction only];
160-280 2.14e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 49.52  E-value: 2.14e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 160 SATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFS 239
Cdd:COG2319  54 GAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTV-RLWDLATGLLLRTLTGHTG---AVRSVAFS 129

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 54111428 240 MDGMFLSASSNTETVHIFKLETvkekpPEEPTTWTGYFGKV 280
Cdd:COG2319 130 PDGKTLASGSADGTVRLWDLAT-----GKLLRTLTGHSGAV 165
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 180-355 9.04e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 47.33  E-value: 9.04e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 180 IPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFR---RGVKRCVSICslafsmDGMFLSASSNTETVHI 256
Cdd:cd00200   5 LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLKghtGPVRDVAASA------DGTYLASGSSDKTIRL 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 257 FKLETvkekpPEEPTTWTGYFGKVL---------MASTSYLPSQV----TEMFNQGRAFAtvrlpfcGHKN-ICSLATIQ 322
Cdd:cd00200  78 WDLET-----GECVRTLTGHTSYVSsvafspdgrILSSSSRDKTIkvwdVETGKCLTTLR-------GHTDwVNSVAFSP 145

                       170       180       190
                ....*....|....*....|....*....|...
gi 54111428 323 KIPRLLVGAADGYLYMYNLDpqEGGECALMKQH 355
Cdd:cd00200 146 DGTFVASSSQDGTIKLWDLR--TGKCVATLTGH 176
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
102-217 5.74e-05

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 44.30  E-value: 5.74e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 102 LAVKLNRQRLIVCLEES--LYIHNIRDMKVLHTIrETPPNPAGLcALSINNDNCYLAYPGSATIGE-VQVFDTINLRAAN 178
Cdd:COG3391 115 LAVDPDGGRLYVADSGNgrVSVIDTATGKVVATI-PVGAGPHGI-AVDPDGKRLYVANSGSNTVSViVSVIDTATGKVVA 192

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 54111428 179 MIPAHDSPLaALAFDASGTKL-------ATASEKGTVIRVFSIPEG 217
Cdd:COG3391 193 TIPVGGGPV-GVAVSPDGRRLyvanrgsNTSNGGSNTVSVIDLATL 237
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 98-213 1.51e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 43.48  E-value: 1.51e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428  98 SNTILAVKL--NRQRLIVC-LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSATIGEVQVFDTINL 174
Cdd:cd00200 177 TGEVNSVAFspDGEKLLSSsSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLA--SGSEDGTIRVWDLRTG 251

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 54111428 175 RAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFS 213
Cdd:cd00200 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT-IRIWD 289
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
164-257 5.49e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 41.22  E-value: 5.49e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54111428 164 GEVQVFDTINLRAANMIPAHDSPlAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGvkrcVSICSLAFSMDGM 243
Cdd:COG3391  90 GRVSVIDLATGKVVATIPVGGGP-RGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVG----AGPHGIAVDPDGK 164

                        90
                ....*....|....*
gi 54111428 244 FL-SASSNTETVHIF 257
Cdd:COG3391 165 RLyVANSGSNTVSVI 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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