|
Name |
Accession |
Description |
Interval |
E-value |
| DOPA_deC_like |
cd06450 |
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
116-516 |
7.16e-135 |
|
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Pssm-ID: 99743 [Multi-domain] Cd Length: 345 Bit Score: 394.26 E-value: 7.16e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 116 FFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW--SSGDGIFCPGGSISNMYAVNLARYQ 193
Cdd:cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLpsEDADGVFTSGGSESNLLALLAARDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 194 RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGlgtDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSG 273
Cdd:cd06450 81 ARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD---VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 274 TTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQdtsnllk 353
Cdd:cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------- 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 354 rchgsqasylfqqdkfydvaldtgdkvvqcgrrvdCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME 433
Cdd:cd06450 231 -----------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 434 PEFVNVCFWFVPPSlrgkqespdyheRLSKVAPVLKERMVKEGSMMIGYQPHGTRgNFFRVVVANSALTCADMDFLLNEL 513
Cdd:cd06450 276 PNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-NVLRFVVTNPLTTRDDADALLEDI 342
|
...
gi 194294551 514 ERL 516
Cdd:cd06450 343 ERA 345
|
|
| GadA |
COG0076 |
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ... |
48-519 |
1.11e-133 |
|
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis
Pssm-ID: 439846 [Multi-domain] Cd Length: 460 Bit Score: 395.35 E-value: 1.11e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 48 LRAVFGVVVDEAIQKGTSVSQKVCEWkEPEELKQLLDLELRSQGESQKQILER-CRAVIRYSVKTGHPRFFNQLFSGLDP 126
Cdd:COG0076 2 FRALLHQALDLAADYLAGLDRPVFGP-SPEELRAALDEPLPEEGLPPEEALAElEDLVLPGSVDWNHPRFLAFVTGGTTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 127 HALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-DGIFCPGGSISNMYAVNLARYQRYP-DCKQRGLR 204
Cdd:COG0076 81 AALAADLLASALNQNMGDWDTSPAATELEREVVRWLADLLGLPEGaGGVFTSGGTEANLLALLAARDRALArRVRAEGLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 205 TLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLE 284
Cdd:COG0076 161 GAPRPRIVVSEEAHSSVDKAARLLGLGRDALRKVPVDEDGRMDPDALEAAIDEDRAAGLNPIAVVATAGTTNTGAIDPLA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 285 AIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSnLLKRCHGSQASYLF 364
Cdd:COG0076 241 EIADIAREHGLWLHVDAAYGGFALPSPELRHLLDGIERADSITVDPHKWLYVPYGCGAVLVRDPE-LLREAFSFHASYLG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 365 QQDkfyDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFV 444
Cdd:COG0076 320 PAD---DGVPNLGDYTLELSRRFRALKLWATLRALGREGYRELIERCIDLARYLAEGIAALPGFELLAPPELNIVCFRYK 396
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 194294551 445 PPslrGKQESPDYHERLSkvapvlkERMVKEGSMMIGYQPHGTRgNFFRVVVANSALTCADMDFLLNELERLGQD 519
Cdd:COG0076 397 PA---GLDEEDALNYALR-------DRLRARGRAFLSPTKLDGR-VVLRLVVLNPRTTEDDVDALLDDLREAAAE 460
|
|
| Pyridoxal_deC |
pfam00282 |
Pyridoxal-dependent decarboxylase conserved domain; |
76-444 |
3.31e-121 |
|
Pyridoxal-dependent decarboxylase conserved domain;
Pssm-ID: 395219 Cd Length: 373 Bit Score: 360.58 E-value: 3.31e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 76 PEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLM 154
Cdd:pfam00282 1 PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPACTEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 155 EEEVLRKLRALVGWS------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPP-----LALFTSKECHYSIQK 223
Cdd:pfam00282 81 ENVVMNWLGEMLGLPaeflgqEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSSgilakLVAYTSDQAHSSIEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 224 GAAFLGLGtdsVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAW 303
Cdd:pfam00282 161 AALYGGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVDAAY 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 304 GGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDtSNLLKRCHGSQASYLFQQDKFYdvalDTGDKVVQC 383
Cdd:pfam00282 238 GGSAFICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKD-KEALQQAFQFNPLYLGHTDSAY----DTGHKQIPL 312
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194294551 384 GRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFV 444
Cdd:pfam00282 313 SRRFRILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICAEVGLGLVCFRLK 373
|
|
| PLN02590 |
PLN02590 |
probable tyrosine decarboxylase |
75-460 |
4.92e-41 |
|
probable tyrosine decarboxylase
Pssm-ID: 178200 [Multi-domain] Cd Length: 539 Bit Score: 154.87 E-value: 4.92e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 75 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVL 153
Cdd:PLN02590 91 QPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQsPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 154 MEEEVLRKLRALVGW-----SSGDGifcpGGSISN-----MYAVNLARYQRYpdCKQRGLRTLPPLALFTSKECHYSIQK 223
Cdd:PLN02590 171 LEIIVLDWLAKLLQLpdhflSTGNG----GGVIQGtgceaVLVVVLAARDRI--LKKVGKTLLPQLVVYGSDQTHSSFRK 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 224 GAAFLGLGTDSVRVVKADERGK--MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 301
Cdd:PLN02590 245 ACLIGGIHEENIRLLKTDSSTNygMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDA 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 302 AWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKfYDVALDTGDKVV 381
Cdd:PLN02590 325 AYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK-KDTVVNYKDWQI 403
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194294551 382 QCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPpsLRGKQESPDYHER 460
Cdd:PLN02590 404 SLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP--VDGDEDQCNERNR 480
|
|
| PLN02880 |
PLN02880 |
tyrosine decarboxylase |
75-447 |
7.61e-40 |
|
tyrosine decarboxylase
Pssm-ID: 215475 [Multi-domain] Cd Length: 490 Bit Score: 150.83 E-value: 7.61e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 75 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVL 153
Cdd:PLN02880 43 QPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQsPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 154 MEEEVLRKLRALVG-----WSSGDGIFCPGGSISNMYAVNLARyQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 228
Cdd:PLN02880 123 LEMIVLDWLAKLLNlpeqfLSTGNGGGVIQGTASEAVLVVLLA-ARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 229 GLGTDSVRVVKADERGK--MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGS 306
Cdd:PLN02880 202 GIHPENCRLLKTDSSTNyaLAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGS 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 307 VLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRChGSQASYLFQQDKFYDVALDTGDKVVQCGRR 386
Cdd:PLN02880 282 ACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSL-STNPEFLKNKASQANSVVDYKDWQIPLGRR 360
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194294551 387 VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPS 447
Cdd:PLN02880 361 FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK 421
|
|
| PRK02769 |
PRK02769 |
histidine decarboxylase; Provisional |
178-426 |
3.33e-16 |
|
histidine decarboxylase; Provisional
Pssm-ID: 235068 [Multi-domain] Cd Length: 380 Bit Score: 80.47 E-value: 3.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 178 GGSISNMYAVNLARyQRYPDCkqrglrtlpplALFTSKECHYSIQKGAAFLGLGTdsvRVVKADERGKMVPEDLERQIgm 257
Cdd:PRK02769 92 GGTEGNLYGCYLAR-ELFPDG-----------TLYYSKDTHYSVSKIARLLRIKS---RVITSLPNGEIDYDDLISKI-- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 258 aEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL---WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLL 334
Cdd:PRK02769 155 -KENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIddyYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 335 AAGLQCSALllqdtsnLLKRCHGSQASylfqqdkfYDVA-LDTGDKVVQCGRR-VDCLKLWLMWKAQGDQGLERRIDQAF 412
Cdd:PRK02769 234 GSPMPCGIV-------LAKKKYVERIS--------VDVDyIGSRDQTISGSRNgHTALLLWAAIRSLGSKGLRQRVQHCL 298
|
250
....*....|....
gi 194294551 413 VLARYLVEEMKKRE 426
Cdd:PRK02769 299 DMAQYAVDRLQANG 312
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
155-336 |
2.53e-08 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 53.54 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 155 EEEVLRKLRALVGWSSGDGIFCPGGSISN-MYAVNLARYQRYpdckqrglrtlpplALFTSKECHYSIQKGAAFLGLGTD 233
Cdd:cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANeAALLALLGPGDE--------------VIVDANGHGSRYWVAAELAGAKPV 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 234 SVRVVKADERGKMVPEDLERQIGmaeaegAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGsvlLSQTH 313
Cdd:cd01494 68 PVPVDDAGYGGLDVAILEELKAK------PNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG---GASPA 138
|
170 180
....*....|....*....|...
gi 194294551 314 RHLLDGIQRADSVAWNPHKLLAA 336
Cdd:cd01494 139 PGVLIPEGGADVVTFSLHKNLGG 161
|
|
| Aminotran_5 |
pfam00266 |
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ... |
156-335 |
2.89e-08 |
|
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Pssm-ID: 425567 [Multi-domain] Cd Length: 368 Bit Score: 55.72 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 156 EEVLRKLRALVGWSSGDGI-FCPGGSIS-NMYAVNLARYQRYPDCkqrglrtlpplALFTSKEcHYSI----QKGAAFLG 229
Cdd:pfam00266 46 EEAREKVAEFINAPSNDEIiFTSGTTEAiNLVALSLGRSLKPGDE-----------IVITEME-HHANlvpwQELAKRTG 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 230 LgtdSVRVVKADERGKMVPEDLERQIgmaeAEGAVpfLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAwggsvll 309
Cdd:pfam00266 114 A---RVRVLPLDEDGLLDLDELEKLI----TPKTK--LVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA------- 177
|
170 180 190
....*....|....*....|....*....|
gi 194294551 310 sQT--HRHlLDgIQR--ADSVAWNPHKLLA 335
Cdd:pfam00266 178 -QAigHRP-ID-VQKlgVDFLAFSGHKLYG 204
|
|
| GLY1 |
COG2008 |
Threonine aldolase [Amino acid transport and metabolism]; |
156-303 |
1.27e-07 |
|
Threonine aldolase [Amino acid transport and metabolism];
Pssm-ID: 441611 [Multi-domain] Cd Length: 333 Bit Score: 53.53 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 156 EEVLRKLRALVGwsSGDGIFCPGGSISNMYAVN--LARYQrypdckqrglrtlpplALFTSKECHysIQK----GAAFL- 228
Cdd:COG2008 38 NRLEERVAELFG--KEAALFVPSGTMANQLALRahTRPGD----------------EVICHETAH--IYVdeggAPEALs 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194294551 229 GLgtdSVRVVkADERGKMVPEDLERQIGMAEAEGAVPFLVS---ATSGTTVLgAFDPLEAIADVCQRHGLWLHVDAAW 303
Cdd:COG2008 98 GV---KLLPV-PGEDGKLTPEDLEAAIRPGDVHFPQPGLVSlenTTEGGTVY-PLEELRAIAAVAREHGLPLHLDGAR 170
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
283-438 |
1.48e-06 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 50.88 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 283 LEAIADVCQRHGLWLHVDAAWGGsvllsqtHRHLLDGIQR------ADSVAWNPHKLLAAGLQCSALLLQDT---SNLLK 353
Cdd:COG1982 179 LKAIAELAHEHGIPVLVDEAHGA-------HFGFHPDLPRsameagADLVVQSTHKTLGALTQSSMLHVKGGrvdHERVN 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 354 RC---HGS-QASYLFqqdkfydVA-LDTgdkvvqcGRRvdclklwlMWKAQGdqglERRIDQAFVLARYLVEEMKKREGF 428
Cdd:COG1982 252 EAlmlLQStSPSYLL-------MAsLDV-------ARR--------QMAGEG----EELLDEALELAIEARKEINKIPGL 305
|
170
....*....|
gi 194294551 429 ElVMEPEFVN 438
Cdd:COG1982 306 Y-VFGPEDLG 314
|
|
| CsdA |
COG0520 |
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]; |
235-335 |
1.02e-05 |
|
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];
Pssm-ID: 440286 [Multi-domain] Cd Length: 396 Bit Score: 47.83 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 235 VRVVKADERGKMVPEDLERQIGmaeaEGAVpfLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAwggsvllsQT-- 312
Cdd:COG0520 131 VRVIPLDEDGELDLEALEALLT----PRTK--LVAVTHVSNVTGTVNPVKEIAALAHAHGALVLVDGA--------QSvp 196
|
90 100
....*....|....*....|....*..
gi 194294551 313 HRHL----LDgiqrADSVAWNPHKLLA 335
Cdd:COG0520 197 HLPVdvqaLG----CDFYAFSGHKLYG 219
|
|
| TA_like |
cd06502 |
Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP) ... |
155-302 |
1.52e-05 |
|
Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Pssm-ID: 99748 [Multi-domain] Cd Length: 338 Bit Score: 46.94 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 155 EEEVLRKLRALVGWSSGD--GIFCPGGSISNmyavnlaryqrypdckQRGLRTL--PPLALFTSKECHYSI--QKGAAFL 228
Cdd:cd06502 30 EDPTTAKLEARAAELFGKeaALFVPSGTAAN----------------QLALAAHtqPGGSVICHETAHIYTdeAGAPEFL 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194294551 229 GlgtdSVRVVKAD-ERGKMVPEDLERQI-GMAEAEGAVPFLVSATSgTTVLGAFDPLE---AIADVCQRHGLWLHVDAA 302
Cdd:cd06502 94 S----GVKLLPVPgENGKLTPEDLEAAIrPRDDIHFPPPSLVSLEN-TTEGGTVYPLDelkAISALAKENGLPLHLDGA 167
|
|
| PLN03032 |
PLN03032 |
serine decarboxylase; Provisional |
202-344 |
5.54e-05 |
|
serine decarboxylase; Provisional
Pssm-ID: 166673 [Multi-domain] Cd Length: 374 Bit Score: 45.59 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 202 GLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVkadERGKMVPEDLERQIgmAEAEGAvPFLVSATSGTTVLGAFD 281
Cdd:PLN03032 105 GREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTL---PSGEIDYDDLERAL--AKNRDK-PAILNVNIGTTVKGAVD 178
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194294551 282 PLEAIADVCQRHG-----LWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 344
Cdd:PLN03032 179 DLDRILRILKELGytedrFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVAL 246
|
|
| PLN02721 |
PLN02721 |
threonine aldolase |
173-326 |
1.37e-04 |
|
threonine aldolase
Pssm-ID: 178323 [Multi-domain] Cd Length: 353 Bit Score: 44.29 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 173 GIFCPGGSISNMYAVNLaryqrypDCKQRGLRtlpplaLFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLE 252
Cdd:PLN02721 58 ALFVPSGTMGNLISVLV-------HCDVRGSE------VILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 253 RQI-GMAEAEGAVPFLV-----SATSGttvlGAFDPLE---AIADVCQRHGLWLHVDAA--WGGSVLLSQTHRHLLdgiQ 321
Cdd:PLN02721 125 AAIrPKGDDHFPTTRLIclentHANCG----GRCLSVEytdKVGELAKRHGLKLHIDGAriFNASVALGVPVHRLV---K 197
|
....*
gi 194294551 322 RADSV 326
Cdd:PLN02721 198 AADSV 202
|
|
| Beta_elim_lyase |
pfam01212 |
Beta-eliminating lyase; |
145-302 |
4.80e-04 |
|
Beta-eliminating lyase;
Pssm-ID: 426128 [Multi-domain] Cd Length: 288 Bit Score: 42.20 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 145 YEIAPVFVLMEEEVlrklRALVGWSSGdgIFCPGGSISNmyavnlaryqrypdckQRGLRTL--PPLALFTSKECHYSI- 221
Cdd:pfam01212 28 YGGDPTVNRLEDRV----AELFGKEAA--LFVPSGTAAN----------------QLALMAHcqRGDEVICGEPAHIHFd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 222 -QKGAAFLGLGTdsVRVVKADERGKMVPEDLERQI-GMAEAEGAVPFLVSAT-----SGTTVLgAFDPLEAIADVCQRHG 294
Cdd:pfam01212 86 eTGGHAELGGVQ--PRPLDGDEAGNMDLEDLEAAIrEVGADIFPPTGLISLEnthnsAGGQVV-SLENLREIAALAREHG 162
|
....*...
gi 194294551 295 LWLHVDAA 302
Cdd:pfam01212 163 IPVHLDGA 170
|
|
| SufS_like |
cd06453 |
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP) ... |
234-302 |
5.98e-04 |
|
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Pssm-ID: 99746 [Multi-domain] Cd Length: 373 Bit Score: 42.07 E-value: 5.98e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194294551 234 SVRVVKADERGKMVPEDLERQIGMAEAegavpfLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA 302
Cdd:cd06453 115 KLKVVPVDDDGQLDLEALEKLLTERTK------LVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGA 177
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
283-365 |
1.26e-03 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 40.69 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 283 LEAIADVCQRHGLWLHVDAAWGGsvllsqtHRHLLDGIQR------ADSVAWNPHKLLAAGLQCSALLLQDtsNLLKRCH 356
Cdd:cd00615 172 LRKIVEEAHHRGLPVLVDEAHGA-------HFRFHPILPSsaamagADIVVQSTHKTLPALTQGSMIHVKG--DLVNPDR 242
|
....*....
gi 194294551 357 GSQASYLFQ 365
Cdd:cd00615 243 VNEALNLHQ 251
|
|
| NifS |
COG1104 |
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino ... |
156-302 |
2.33e-03 |
|
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino acid transport and metabolism];
Pssm-ID: 440721 [Multi-domain] Cd Length: 381 Bit Score: 40.42 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 156 EEVLRKLRALVGWSSGDGIFCPGGSISNmyavNLA---RYQRYPDCKQRglrtlpplaLFTSK-EcHYSIQKGAAFL-GL 230
Cdd:COG1104 48 EEAREQVAALLGADPEEIIFTSGGTEAN----NLAikgAARAYRKKGKH---------IITSAiE-HPAVLETARFLeKE 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 194294551 231 GTDsVRVVKADERGKMVPEDLERQIgmaeAEGAVpfLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA 302
Cdd:COG1104 114 GFE-VTYLPVDEDGRVDLEALEAAL----RPDTA--LVSVMHANNETGTIQPIAEIAEIAKEHGVLFHTDAV 178
|
|
| PLN02263 |
PLN02263 |
serine decarboxylase |
202-305 |
2.76e-03 |
|
serine decarboxylase
Pssm-ID: 177904 [Multi-domain] Cd Length: 470 Bit Score: 40.18 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194294551 202 GLRTLPPLALFTSKECHYSIQKGAAFLglgtdSVRVVKAD--ERGKMVPEDLERQIgMAEAEGavPFLVSATSGTTVLGA 279
Cdd:PLN02263 172 GREVFPDGILYASRESHYSVFKAARMY-----RMECVKVDtlVSGEIDCADFKAKL-LANKDK--PAIINVNIGTTVKGA 243
|
90 100 110
....*....|....*....|....*....|.
gi 194294551 280 FDPLEAIADVCQRHG-----LWLHVDAAWGG 305
Cdd:PLN02263 244 VDDLDLVIKTLEECGfsqdrFYIHCDGALFG 274
|
|
| KBL_like |
cd06454 |
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate ... |
248-302 |
3.67e-03 |
|
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Pssm-ID: 99747 [Multi-domain] Cd Length: 349 Bit Score: 39.47 E-value: 3.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 194294551 248 PEDLERQIgmAEA-EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA 302
Cdd:cd06454 117 MEDLEKLL--REArRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEA 170
|
|
|