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Conserved domains on  [gi|7656969|ref|NP_056595|]
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complement factor H-related 1 precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 77-270 1.65e-15

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 75.46  E-value: 1.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    77 CTESGWSPTPKCL-RLCFFPF-VENGNSTSSGQTHveGDIVQVVCNQGYSL-QNNQSTITCAEEGWSI----TPKCISTn 149
Cdd:PHA02927  70 CTGTGWTLFNQCIkRRCPSPRdIDNGQLDIGGVDF--GSSITYSCNSGYQLiGESKSYCELGSTGSMVwnpeAPICESV- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   150 ptgKCGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCRNGKWSEPPTCiyPTGKCgPPPPIDNGDITSL 229
Cdd:PHA02927 147 ---KCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTC--QIVKC-PHPTISNGYLSSG 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 7656969   230 SLLEYEPLSSVEYQCQNYYVLKGKKTITCRNGKWSEP--PTCL 270
Cdd:PHA02927 220 FKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 77-270 1.65e-15

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 75.46  E-value: 1.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    77 CTESGWSPTPKCL-RLCFFPF-VENGNSTSSGQTHveGDIVQVVCNQGYSL-QNNQSTITCAEEGWSI----TPKCISTn 149
Cdd:PHA02927  70 CTGTGWTLFNQCIkRRCPSPRdIDNGQLDIGGVDF--GSSITYSCNSGYQLiGESKSYCELGSTGSMVwnpeAPICESV- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   150 ptgKCGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCRNGKWSEPPTCiyPTGKCgPPPPIDNGDITSL 229
Cdd:PHA02927 147 ---KCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTC--QIVKC-PHPTISNGYLSSG 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 7656969   230 SLLEYEPLSSVEYQCQNYYVLKGKKTITCRNGKWSEP--PTCL 270
Cdd:PHA02927 220 FKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 154-209 1.59e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.93  E-value: 1.59e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 7656969  154 CGPPPPIDNGDITSlSLPVYASLSSVEYQCQKYYLLKGNKTITCR-NGKWS-EPPTCI 209
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 215-269 1.77e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.22  E-value: 1.77e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969     215 CGPPPPIDNGDITSLSLlEYEPLSSVEYQCQNYYVLKGKKTITCR-NGKWS-EPPTC 269
Cdd:smart00032   1 CPPPPDIENGTVTSSSG-TYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
154-208 1.03e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.18  E-value: 1.03e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969    154 CGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCR-NGKWS-EPPTC 208
Cdd:pfam00084   1 CPPPPDIPNGKVSATK-NEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 77-270 1.65e-15

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 75.46  E-value: 1.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    77 CTESGWSPTPKCL-RLCFFPF-VENGNSTSSGQTHveGDIVQVVCNQGYSL-QNNQSTITCAEEGWSI----TPKCISTn 149
Cdd:PHA02927  70 CTGTGWTLFNQCIkRRCPSPRdIDNGQLDIGGVDF--GSSITYSCNSGYQLiGESKSYCELGSTGSMVwnpeAPICESV- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   150 ptgKCGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCRNGKWSEPPTCiyPTGKCgPPPPIDNGDITSL 229
Cdd:PHA02927 147 ---KCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTC--QIVKC-PHPTISNGYLSSG 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 7656969   230 SLLEYEPLSSVEYQCQNYYVLKGKKTITCRNGKWSEP--PTCL 270
Cdd:PHA02927 220 FKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 98-269 5.02e-15

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 73.92  E-value: 5.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    98 ENGNSTSSGQTHVEGDIVQVVCNQGYSLQNNQST-ITCAEEGWSITPKCISTnptgKCGPPPPIDNG--DITSLSLPvya 174
Cdd:PHA02927  33 KNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIyAKCTGTGWTLFNQCIKR----RCPSPRDIDNGqlDIGGVDFG--- 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   175 slSSVEYQCQKYYLLKGNKTITCRNGK-----WS-EPPTCiyPTGKCGPPPPIDNGDITSLSLLeYEPLSSVEYQCQNYY 248
Cdd:PHA02927 106 --SSITYSCNSGYQLIGESKSYCELGStgsmvWNpEAPIC--ESVKCQSPPSISNGRHNGYEDF-YTDGSVVTYSCNSGY 180

                        170       180
                 ....*....|....*....|.
gi 7656969   249 VLKGKKTITCRNGKWSEPPTC 269
Cdd:PHA02927 181 SLIGNSGVLCSGGEWSDPPTC 201
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 154-209 1.59e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.93  E-value: 1.59e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 7656969  154 CGPPPPIDNGDITSlSLPVYASLSSVEYQCQKYYLLKGNKTITCR-NGKWS-EPPTCI 209
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 215-269 3.09e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.16  E-value: 3.09e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969  215 CGPPPPIDNGDITSlSLLEYEPLSSVEYQCQNYYVLKGKKTITCR-NGKWS-EPPTC 269
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 215-269 1.77e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.22  E-value: 1.77e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969     215 CGPPPPIDNGDITSLSLlEYEPLSSVEYQCQNYYVLKGKKTITCR-NGKWS-EPPTC 269
Cdd:smart00032   1 CPPPPDIENGTVTSSSG-TYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 154-208 3.10e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 49.45  E-value: 3.10e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969     154 CGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCR-NGKWS-EPPTC 208
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 15-189 1.56e-07

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 52.40  E-value: 1.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    15 TSWFSTAKGEVSLCDFPKIRHGILYDEKKNEPFssvlsGKILYYSCEYNFASPSNSFwtrITCTESGWSPTPKCLRLCFF 94
Cdd:PHA02954 117 TSWNDTVTCPNAECQPLQLEHGSCQPVKEKYSF-----GEHITINCDVGYEVIGASY---ISCTANSWNVIPSCQQKCDI 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    95 PFVENGnsTSSGQTHVEGDIVQVVCNQGYSLQNNQSTiTCAEEGWS-ITPKCISTNPTGKCGPPPPIDNGDITSLSLPVY 173
Cdd:PHA02954 189 PSLSNG--LISGSTFSIGGVIHLSCKSGFTLTGSPSS-TCIDGKWNpVLPICVRSNEEFDPVDDGPDDETDLSKLSKDVV 265

                        170
                 ....*....|....*.
gi 7656969   174 ASLSSVEYQCQKYYLL 189
Cdd:PHA02954 266 QYEQEIESLEATYHII 281
Sushi pfam00084
Sushi repeat (SCR repeat);
154-208 1.03e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.18  E-value: 1.03e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969    154 CGPPPPIDNGDITSLSlPVYASLSSVEYQCQKYYLLKGNKTITCR-NGKWS-EPPTC 208
Cdd:pfam00084   1 CPPPPDIPNGKVSATK-NEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
215-269 1.17e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.18  E-value: 1.17e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969    215 CGPPPPIDNGDITSLSLlEYEPLSSVEYQCQNYYVLKGKKTITCR-NGKWS-EPPTC 269
Cdd:pfam00084   1 CPPPPDIPNGKVSATKN-EYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 154-269 4.84e-06

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 47.74  E-value: 4.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   154 CGPPPPIDNGDITSLsLPVYASLSSVEYQCQKYYLLKGNKTITC----RNGKWS-EPPTCIYPtgKCGPPPPIDNGDITS 228
Cdd:PHA02639  22 CDKPDDISNGFITEL-MEKYEIGKLIEYTCNTDYALIGDRFRTCikdkNNAIWSnKAPFCMLK--ECNDPPSIINGKIYN 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 7656969   229 LSLLeYEPLSSVEYQCQNY----YVLKGKKTITCRNGK-WS-EPPTC 269
Cdd:PHA02639  99 KREM-YKVGDEIYYVCNEHkgvqYSLVGNEKITCIQDKsWKpDPPIC 144
PHA02831 PHA02831
EEV host range protein; Provisional
 107-258 1.88e-05

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 45.75  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   107 QTHVEGDIVQVVCNQGYslqnNQSTITCAEEGWSITPKCISTNptgKCGPPPPIDNGDITSlSLPVYASLSSVEYQCQ-- 184
Cdd:PHA02831  38 KVYEENENLEYKCNNNF----DKVFVTCNNGSWSTKNMCIGKR---NCKDPVTILNGYIKN-KKDQYSFGDSVTYACKvn 109

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7656969   185 --KYYLLKGNKTITCRNGKW-SEPPTCIYPTGKCgppPPIDNGDITSLSLLEYEPlSSVEYQCQNYYVLKGKKTITC 258
Cdd:PHA02831 110 klEKYSIVGNETVKCINKQWvPKYPVCKLIRCKY---PALQNGFLNVFEKKFYYG-DIVNFKCKKGFILLGSSVSTC 182
PHA02639 PHA02639
EEV host range protein; Provisional
 97-279 2.05e-05

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 45.81  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969    97 VENGNSTSSGQTHVEGDIVQVVCNQGYSLQNNQSTiTCAEEG----WS-ITPKCIstnpTGKCGPPPPIDNGDITSlSLP 171
Cdd:PHA02639  28 ISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFR-TCIKDKnnaiWSnKAPFCM----LKECNDPPSIINGKIYN-KRE 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   172 VYASLSSVEYQCQKY----YLLKGNKTITCRNGK-WS-EPPTCIYPTGKCgppPPIDNGDITSL-SLLEYEPLSSVEYQC 244
Cdd:PHA02639 102 MYKVGDEIYYVCNEHkgvqYSLVGNEKITCIQDKsWKpDPPICKMINCRF---PALQNGYINGIpSNKKFYYKTRVGFSC 178

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 7656969   245 QNYYVLKGKKTITCR-NGKW-SEPPTCLSACVISEAI 279
Cdd:PHA02639 179 KSGFDLVGEKYSTCNiNATWfPSIPTCVRNKPIDDII 215
PHA02831 PHA02831
EEV host range protein; Provisional
 172-269 5.90e-05

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 44.21  E-value: 5.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   172 VYASLSSVEYQCQKYYllkgNKT-ITCRNGKWSEPPTCIYPTgKCGPPPPIDNGDITSlSLLEYEPLSSVEYQCQ----N 246
Cdd:PHA02831  39 VYEENENLEYKCNNNF----DKVfVTCNNGSWSTKNMCIGKR-NCKDPVTILNGYIKN-KKDQYSFGDSVTYACKvnklE 112

                         90       100
                 ....*....|....*....|....
gi 7656969   247 YYVLKGKKTITCRNGKW-SEPPTC 269
Cdd:PHA02831 113 KYSIVGNETVKCINKQWvPKYPVC 136
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 95-146 8.75e-05

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 39.75  E-value: 8.75e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 7656969   95 PFVENGNSTSSGQTHVEGDIVQVVCNQGYSLQNNqSTITCAEEG-WS-ITPKCI 146
Cdd:cd00033   5 PVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGS-STITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 95-145 2.32e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 38.66  E-value: 2.32e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 7656969      95 PFVENGNSTSSGQTHVEGDIVQVVCNQGYSLQNNqSTITCAEEG-WSIT-PKC 145
Cdd:smart00032   5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGS-STITCLENGtWSPPpPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 153-269 5.47e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 40.69  E-value: 5.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7656969   153 KCGPPPPIDNGDITSlSLPVYASLSSVEYQCQKY-----YLLKGNKTITC-RNGKWS-EPPTCIYPTGKCgppPPIDNG- 224
Cdd:PHA02817  23 KCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICeKDGKWNkEFPVCKIIRCRF---PALQNGf 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 7656969   225 --DITSLSLLEYEplSSVEYQCQNYYVLKGKKTITCR-NGKW-SEPPTC 269
Cdd:PHA02817  99 vnGIPDSKKFYYE--SEVSFSCKPGFVLIGTKYSVCGiNSSWiPKVPIC 145
PHA02817 PHA02817
EEV Host range protein; Provisional
 208-269 9.76e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 36.84  E-value: 9.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7656969   208 CIYPTGKCGPPPPIDNGDITSlSLLEYEPLSSVEYQCQNY-----YVLKGKKTITC-RNGKWS-EPPTC 269
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICeKDGKWNkEFPVC 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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