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Conserved domains on  [gi|112382239|ref|NP_056101|]
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synemin isoform B [Homo sapiens]

Protein Classification

intermediate filament family protein( domain architecture ID 705869)

intermediate filament (IF) family protein is a primordial component of the cytoskeleton and the nuclear envelope; such as type I keratins

CATH:  1.20.5.170
Gene Ontology:  GO:0005882
PubMed:  2183847|12596228|28101862

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Filament super family cl25641
Intermediate filament protein;
11-318 2.65e-23

Intermediate filament protein;


The actual alignment was detected with superfamily member pfam00038:

Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 102.31  E-value: 2.65e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    11 EKAELQELNARLYDYVCRVRELERENLLLEEELRGRRGREGLWAEGQARCAE-EARSLRQQLDELSWATALAEGERDALR 89
Cdd:pfam00038    2 EKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEkEIEDLRRQLDTLTVERARLQLELDNLR 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    90 RELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRAR 169
Cdd:pfam00038   82 LAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEMD 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   170 ATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRA 249
Cdd:pfam00038  162 AARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKA 241

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112382239   250 RLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEVATYRALLEGE 318
Cdd:pfam00038  242 SLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
11-318 2.65e-23

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 102.31  E-value: 2.65e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    11 EKAELQELNARLYDYVCRVRELERENLLLEEELRGRRGREGLWAEGQARCAE-EARSLRQQLDELSWATALAEGERDALR 89
Cdd:pfam00038    2 EKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEkEIEDLRRQLDTLTVERARLQLELDNLR 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    90 RELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRAR 169
Cdd:pfam00038   82 LAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEMD 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   170 ATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRA 249
Cdd:pfam00038  162 AARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKA 241

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112382239   250 RLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEVATYRALLEGE 318
Cdd:pfam00038  242 SLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 55-316 9.19e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.50  E-value: 9.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   55 EGQARCAEEARSLRQQLDELSWATALAEgeRDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALL 134
Cdd:COG1196   206 ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  135 GRLQAERRGLDAAHERDVRELRARAASLTmhfRARAtgpaapppRLREvhdsyALLVAESWRETVQLYEDEVRELEEALR 214
Cdd:COG1196   284 EEAQAEEYELLAELARLEQDIARLEERRR---ELEE--------RLEE-----LEEELAELEEELEELEEELEELEEELE 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  215 RGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEygiQAEERQRVIDcLEDEKATLTLAMADWLRDY 294
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA---AAELAAQLEE-LEEAEEALLERLERLEEEL 423

                         250       260
                  ....*....|....*....|..
gi 112382239  295 QDLLQVKTGLSLEVATYRALLE 316
Cdd:COG1196   424 EELEEALAELEEEEEEEEEALE 445
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 63-297 6.37e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.46  E-value: 6.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    63 EARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERR 142
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   143 GLDAAHErdvrELRARAASLTMHFRARATGPAAPPPRLREVHDSyallvAESWRETVQLYEDEVRELEEALRRGQESRLQ 222
Cdd:TIGR02168  758 ELEAEIE----ELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRERLES 828

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112382239   223 AEEETRLCAQEAEALRREALGLEQLRARLEDALlrmrEEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDL 297
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEI----EELEELIEELESELEALLNERASLEEALALLRSELEEL 899
PRK09039 PRK09039
peptidoglycan -binding protein;
66-162 1.29e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 45.73  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   66 SLRQQLDELSWATALAEGERDALRRELRELQRL--DAEERAarGRLDAELGAQQRELQEALGARAAL----EALLGRLQA 139
Cdd:PRK09039   78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAgaAAEGRA--GELAQELDSEKQVSARALAQVELLnqqiAALRRQLAA 155

                          90       100
                  ....*....|....*....|...
gi 112382239  140 ERRGLDAAHERDvRELRARAASL 162
Cdd:PRK09039  156 LEAALDASEKRD-RESQAKIADL 177
CHAD smart00880
The CHAD domain is an alpha-helical domain functionally associated with some members of the ...
 65-214 5.63e-04

The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family; It has conserved histidines that may chelate metals.


Pssm-ID: 214880 [Multi-domain]  Cd Length: 262  Bit Score: 43.15  E-value: 5.63e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239     65 RSLRQQLDELswataLAEGERDALRRELRELQRLDAEERAargrLDAELGAQQRELQEALGARAALEALLGRLQAERrgl 144
Cdd:smart00880   36 RSALRLFRPV-----LPREAAAALRAELRWLARELGPLRD----LDVLLERLLELLAALLPELPALDALVAALEARR--- 103

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112382239    145 DAAHERDVRELRARAASLTMH-----FRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALR 214
Cdd:smart00880  104 AAARRALLAALDSARYTALLLdlsrwLATPPWQPAADDKAARPLADFAAKALRRLLRKLRRAFPAARALLDDEAL 178
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
11-318 2.65e-23

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 102.31  E-value: 2.65e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    11 EKAELQELNARLYDYVCRVRELERENLLLEEELRGRRGREGLWAEGQARCAE-EARSLRQQLDELSWATALAEGERDALR 89
Cdd:pfam00038    2 EKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEkEIEDLRRQLDTLTVERARLQLELDNLR 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    90 RELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRAR 169
Cdd:pfam00038   82 LAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEMD 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   170 ATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRA 249
Cdd:pfam00038  162 AARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKA 241

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112382239   250 RLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEVATYRALLEGE 318
Cdd:pfam00038  242 SLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 55-316 9.19e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.50  E-value: 9.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   55 EGQARCAEEARSLRQQLDELSWATALAEgeRDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALL 134
Cdd:COG1196   206 ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  135 GRLQAERRGLDAAHERDVRELRARAASLTmhfRARAtgpaapppRLREvhdsyALLVAESWRETVQLYEDEVRELEEALR 214
Cdd:COG1196   284 EEAQAEEYELLAELARLEQDIARLEERRR---ELEE--------RLEE-----LEEELAELEEELEELEEELEELEEELE 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  215 RGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEygiQAEERQRVIDcLEDEKATLTLAMADWLRDY 294
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA---AAELAAQLEE-LEEAEEALLERLERLEEEL 423

                         250       260
                  ....*....|....*....|..
gi 112382239  295 QDLLQVKTGLSLEVATYRALLE 316
Cdd:COG1196   424 EELEEALAELEEEEEEEEEALE 445
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 57-317 8.13e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 8.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   57 QARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGR 136
Cdd:COG1196   262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  137 LQAERRGLDAAHERDVRELRARAASLTMHFRARAtgpaappPRLREVHDSYALLVAEswRETVQLYEDEVRELEEALRRG 216
Cdd:COG1196   342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELA-------EAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEAL 412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  217 QESRLQAEEETrlcAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDcLEDEKATLTLAMADWLRDYQD 296
Cdd:COG1196   413 LERLERLEEEL---EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE-LLEEAALLEAALAELLEELAE 488

                         250       260
                  ....*....|....*....|.
gi 112382239  297 LLQVKTGLSLEVATYRALLEG 317
Cdd:COG1196   489 AAARLLLLLEAEADYEGFLEG 509
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 11-271 3.11e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.49  E-value: 3.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   11 EKAELQELNARLYdyvcrvrelerenllleeelrGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRR 90
Cdd:COG1196   279 LELELEEAQAEEY---------------------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   91 ELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERrgldAAHERDVRELRARAASLTMHFRARA 170
Cdd:COG1196   338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL----LEALRAAAELAAQLEELEEAEEALL 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  171 tgpaapppRLREVHDSYallvAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRAR 250
Cdd:COG1196   414 --------ERLERLEEE----LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481

                         250       260
                  ....*....|....*....|.
gi 112382239  251 LEDALLRMREEYGIQAEERQR 271
Cdd:COG1196   482 LLEELAEAAARLLLLLEAEAD 502
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 63-297 6.37e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.46  E-value: 6.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    63 EARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERR 142
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   143 GLDAAHErdvrELRARAASLTMHFRARATGPAAPPPRLREVHDSyallvAESWRETVQLYEDEVRELEEALRRGQESRLQ 222
Cdd:TIGR02168  758 ELEAEIE----ELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRERLES 828

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112382239   223 AEEETRLCAQEAEALRREALGLEQLRARLEDALlrmrEEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDL 297
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEI----EELEELIEELESELEALLNERASLEEALALLRSELEEL 899
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
62-261 1.64e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 59.16  E-value: 1.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   62 EEARSLRQQLDELSWATALAEgERDALRRELRELQRLDA-----EERAARGRLDAELGAQQRELQEALGARAALEALLGR 136
Cdd:COG4913   242 EALEDAREQIELLEPIRELAE-RYAAARERLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  137 LQAERRGLDAAHE----RDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALlVAESWRETVQLYEDEVRELEEA 212
Cdd:COG4913   321 LREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA-SAEEFAALRAEAAALLEALEEE 399

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 112382239  213 LRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREE 261
Cdd:COG4913   400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
COG3903 COG3903
Predicted ATPase [General function prediction only];
49-316 5.89e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443109 [Multi-domain]  Cd Length: 933  Bit Score: 57.33  E-value: 5.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   49 REGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARA 128
Cdd:COG3903   563 EGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAA 642

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  129 ALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRE 208
Cdd:COG3903   643 AAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAA 722

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  209 LEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMA 288
Cdd:COG3903   723 AAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAA 802

                         250       260
                  ....*....|....*....|....*...
gi 112382239  289 DWLRDYQDLLQVKTGLSLEVATYRALLE 316
Cdd:COG3903   803 AAAAAAAAAAAAALAAAAAAAAAAAAAL 830
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 57-283 9.24e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.99  E-value: 9.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    57 QARCAEEARSLRQQLDELSWATAL-------------------AEGERDALRRELRELQRLDAEERAARGRLDAELGAQQ 117
Cdd:TIGR02168  208 QAEKAERYKELKAELRELELALLVlrleelreeleelqeelkeAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   118 RELQEALGARAALEALLGRLQAERRGLDAAHER-------------------------------DVRELRARAASLTMHF 166
Cdd:TIGR02168  288 KELYALANEISRLEQQKQILRERLANLERQLEEleaqleeleskldelaeelaeleekleelkeELESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   167 RARATGPAAPPPRLREVHDSYALLV--AESWRETVQLYEDEVRELEEalRRGQESRLQAEEETRLCAQEAEALRREALGL 244
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLElqIASLNNEIERLEARLERLED--RRERLQQEIEELLKKLEEAELKELQAELEEL 445

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 112382239   245 EQLRARLEDALLRMREEYGIQAEER---QRVIDCLEDEKATL 283
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELeeaEQALDAAERELAQL 487
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 54-319 7.28e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.84  E-value: 7.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   54 AEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRldaeeraargrldaELGAQQRELQEALGARAALEAL 133
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER--------------RIAALARRIRALEQELAALEAE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  134 LGRLQAERRGLDAAHERDVRELRARAASLTMHFRaratgpaAPPPRLrevhdsyaLLVAESWRETV---QLYEDEVRELE 210
Cdd:COG4942    85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR-------QPPLAL--------LLSPEDFLDAVrrlQYLKYLAPARR 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  211 EALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALlrmreeygiqaEERQRVIDCLEDEKATLTLAMADW 290
Cdd:COG4942   150 EQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALK-----------AERQKLLARLEKELAELAAELAEL 218

                         250       260
                  ....*....|....*....|....*....
gi 112382239  291 LRDYQDLLQVKTGLSLEVATYRALLEGES 319
Cdd:COG4942   219 QQEAEELEALIARLEAEAAAAAERTPAAG 247
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 54-336 4.30e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.09  E-value: 4.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   54 AEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRE--------LQRLDAEERAARGRLDAELGAQQRELQEALG 125
Cdd:COG1196   448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaarllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  126 ARAALEALLGRLQAERRGLDAAH--ERDVRELRARAASLTMHFRARAT---------GPAAPPPRLREVHDSYALLVAES 194
Cdd:COG1196   528 VLIGVEAAYEAALEAALAAALQNivVEDDEVAAAAIEYLKAAKAGRATflpldkiraRAALAAALARGAIGAAVDLVASD 607

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  195 WRE----------TVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGI 264
Cdd:COG1196   608 LREadaryyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112382239  265 QAEERQRVID---CLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEVATYRALLEGESNPEIVIWAEHVENMPSE 336
Cdd:COG1196   688 LAEEELELEEallAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
COG3903 COG3903
Predicted ATPase [General function prediction only];
53-318 5.28e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443109 [Multi-domain]  Cd Length: 933  Bit Score: 50.79  E-value: 5.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   53 WAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAA--------RGRLDAELGAQQRELQEAL 124
Cdd:COG3903   497 YYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAalapfwflRGLLREGRRWLERALAAAG 576

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  125 GARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYED 204
Cdd:COG3903   577 EAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAA 656

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  205 EVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLT 284
Cdd:COG3903   657 AAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAAL 736

                         250       260       270
                  ....*....|....*....|....*....|....
gi 112382239  285 LAMADWLRDYQDLLQVKTGLSLEVATYRALLEGE 318
Cdd:COG3903   737 AAAAAAAALALAAAAAAAAAAAAAAALAAAAAAA 770
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
85-299 1.09e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.91  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   85 RDALRRELRELQRLDAEERAARGRLDAELgAQQRELQEALGAR----------AALEALLGRLQAERRGLDAAHErDVRE 154
Cdd:COG4913   612 LAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLaeyswdeidvASAEREIAELEAELERLDASSD-DLAA 689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  155 LRARAAsltmhfRARAtgpaapppRLREVHDSYALLVAESWR--ETVQLYEDEVRELEEALRRGqESRLQAEEETRLCAQ 232
Cdd:COG4913   690 LEEQLE------ELEA--------ELEELEEELDELKGEIGRleKELEQAEEELDELQDRLEAA-EDLARLELRALLEER 754

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112382239  233 EAEALRREAlgLEQLRARLEDALLRMREEygiQAEERQRVIDCLEDEKATLTLAMADW------LRDYQDLLQ 299
Cdd:COG4913   755 FAAALGDAV--ERELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLdadlesLPEYLALLD 822
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
89-269 1.21e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.91  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   89 RRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLtmhfra 168
Cdd:COG4913   595 RRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER------ 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  169 ratgpaapppRLREVHDSYALLVAESwrETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREalgLEQLR 248
Cdd:COG4913   669 ----------EIAELEAELERLDASS--DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE---LDELQ 733

                         170       180
                  ....*....|....*....|.
gi 112382239  249 ARLEDALLRMREEYGIQAEER 269
Cdd:COG4913   734 DRLEAAEDLARLELRALLEER 754
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 12-279 1.27e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 1.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    12 KAELQELNARLYDYVCRVRELERENLLLEEELRGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRE 91
Cdd:TIGR02168  704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    92 LRELQRLDAEERAARGRLDAELGAQQRELQ----EALGARAALEALLGRLQAERRGLDAAHERdVRELRARAASLTmHFR 167
Cdd:TIGR02168  784 IEELEAQIEQLKEELKALREALDELRAELTllneEAANLRERLESLERRIAATERRLEDLEEQ-IEELSEDIESLA-AEI 861

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   168 ARATgpaAPPPRLREVHDSyALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQL 247
Cdd:TIGR02168  862 EELE---ELIEELESELEA-LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937

                          250       260       270
                   ....*....|....*....|....*....|..
gi 112382239   248 RARLEDALlrmREEYGIQAEERQRVIDCLEDE 279
Cdd:TIGR02168  938 IDNLQERL---SEEYSLTLEEAEALENKIEDD 966
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 5-253 1.89e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.28  E-value: 1.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239     5 RLQTGPEKAELQELNARLYDYVCRVRELERENLLLEEELRGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGE 84
Cdd:TIGR02168  273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    85 RDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTm 164
Cdd:TIGR02168  353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE- 431

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   165 hfraratgpaapPPRLREVHDSyallVAESWRETVQLYEdEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGL 244
Cdd:TIGR02168  432 ------------EAELKELQAE----LEELEEELEELQE-ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494


                   ....*....
gi 112382239   245 EQLRARLED 253
Cdd:TIGR02168  495 ERLQENLEG 503
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 58-283 2.35e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 2.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    58 ARCAEEARSLRQQLDELSWATALAEGErdaLRRELRELQRLDAEERAARGRLdAELGAQQRELQEalgARAALEALLGRL 137
Cdd:TIGR02169  691 SSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQLEQEEEKLKERL-EELEEDLSSLEQ---EIENVKSELKEL 763

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   138 QAERrgldAAHERDVRELRARAASLTMHFRaratgpaapPPRLREVHDSYallvaESWRETVQLYEDEVRELEEALRRGQ 217
Cdd:TIGR02169  764 EARI----EELEEDLHKLEEALNDLEARLS---------HSRIPEIQAEL-----SKLEEEVSRIEARLREIEQKLNRLT 825

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112382239   218 ESRLQAEEETrlcaQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATL 283
Cdd:TIGR02169  826 LEKEYLEKEI----QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
FUSC pfam04632
Fusaric acid resistance protein family; This family includes a conserved region found in two ...
 53-161 2.72e-05

Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.


Pssm-ID: 428044 [Multi-domain]  Cd Length: 655  Bit Score: 48.43  E-value: 2.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    53 WAEGQARCAEEARSLRQQLDEL-SWATALAE----GERDALRRELRELQRLDAEERAARGRLDAELGAqqrELQEALGAR 127
Cdd:pfam04632  241 LARLRTEGAGTVPELAALLDELaAWEAALAAealqAALAALRARLRALRPALPLDFDTAAELLARLAD---LLAELAEAL 317

                           90       100       110
                   ....*....|....*....|....*....|....
gi 112382239   128 AALEALLGRLQAERRGLDAAHERDVRELRARAAS 161
Cdd:pfam04632  318 ASCRALRHPIAQGARPARLARHRDHGAALLNGLR 351
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 11-309 3.64e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.39  E-value: 3.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   11 EKAELQELNARLydyvcrvrELERENLLLEEELRGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRR 90
Cdd:COG1196   450 EEAELEEEEEAL--------LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   91 ELRELQRLDAEERAARGRLDAELGA--QQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRA 168
Cdd:COG1196   522 LAGAVAVLIGVEAAYEAALEAALAAalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  169 RATGPAAPPPRLREVHDSYALLVAESW-----------RETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEAL 237
Cdd:COG1196   602 DLVASDLREADARYYVLGDTLLGRTLVaarleaalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112382239  238 RREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDcLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEVA 309
Cdd:COG1196   682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
58-261 4.87e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.99  E-value: 4.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   58 ARCAEEARSLRQQLDEL----SWATALAEgERDALRRELRELQRLDAEERAARGRLDAELGA---QQRELQEALGARAAL 130
Cdd:COG4913   664 ASAEREIAELEAELERLdassDDLAALEE-QLEELEAELEELEEELDELKGEIGRLEKELEQaeeELDELQDRLEAAEDL 742

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  131 EALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAApppRLREVHDSYallvAESWRETVQLYEDEVRELE 210
Cdd:COG4913   743 ARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEE---ELERAMRAF----NREWPAETADLDADLESLP 815

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 112382239  211 EALRRGQesRLQAEEETRLCAQEAEALRREALG-LEQLRARLEDALLRMREE 261
Cdd:COG4913   816 EYLALLD--RLEEDGLPEYEERFKELLNENSIEfVADLLSKLRRAIREIKER 865
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 64-177 5.41e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.07  E-value: 5.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   64 ARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRG 143
Cdd:COG4942   145 APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224

                          90       100       110
                  ....*....|....*....|....*....|....
gi 112382239  144 LDAAHERDVRELRARAASLTMHFRARATGPAAPP 177
Cdd:COG4942   225 LEALIARLEAEAAAAAERTPAAGFAALKGKLPWP 258
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 90-304 1.04e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.30  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   90 RELRELQRLDAEE---RAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLdaahERDVRELRARAAsltmhf 166
Cdd:COG1579     7 RALLDLQELDSELdrlEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL----ELEIEEVEARIK------ 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  167 RARAtgpaapppRLREVHDSyallvaeswREtvqlYEDEVRELEEALRRgqesRLQAEEETRLCAQEAEALRREALGLEQ 246
Cdd:COG1579    77 KYEE--------QLGNVRNN---------KE----YEALQKEIESLKRR----ISDLEDEILELMERIEELEEELAELEA 131

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 112382239  247 LRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAM-ADWLRDYQDLLQVKTGL 304
Cdd:COG1579   132 ELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIpPELLALYERIRKRKNGL 190
PRK09039 PRK09039
peptidoglycan -binding protein;
66-162 1.29e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 45.73  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   66 SLRQQLDELSWATALAEGERDALRRELRELQRL--DAEERAarGRLDAELGAQQRELQEALGARAAL----EALLGRLQA 139
Cdd:PRK09039   78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAgaAAEGRA--GELAQELDSEKQVSARALAQVELLnqqiAALRRQLAA 155

                          90       100
                  ....*....|....*....|...
gi 112382239  140 ERRGLDAAHERDvRELRARAASL 162
Cdd:PRK09039  156 LEAALDASEKRD-RESQAKIADL 177
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
69-256 1.43e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 46.30  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   69 QQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLdAELGAQQRELQEALGARAA---LEALLGRLQAERRGLD 145
Cdd:COG4717    71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-EELREELEKLEKLLQLLPLyqeLEALEAELAELPERLE 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  146 AAHERdVRELRARAASLTMHFRARAtgpaapppRLREVHDSYALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEE 225
Cdd:COG4717   150 ELEER-LEELRELEEELEELEAELA--------ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220

                         170       180       190
                  ....*....|....*....|....*....|.
gi 112382239  226 ETRLCAQEAEALRREALgLEQLRARLEDALL 256
Cdd:COG4717   221 ELEELEEELEQLENELE-AAALEERLKEARL 250
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1-283 1.71e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.91  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    1 MLSWRLQTGPEKAELQELNARLYDYVCRVrelerenllleEELRGRRGREGLWAEGQARCAEEARSLRQQLDELswATAL 80
Cdd:COG4717   120 KLEKLLQLLPLYQELEALEAELAELPERL-----------EELEERLEELRELEEELEELEAELAELQEELEEL--LEQL 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   81 AEGERDALRRELRELQRLDAEERAARgrldAELGAQQRELQEALGARAALEALLGRLQAERRgLDAAherdvrELRARAA 160
Cdd:COG4717   187 SLATEEELQDLAEELEELQQRLAELE----EELEEAQEELEELEEELEQLENELEAAALEER-LKEA------RLLLLIA 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  161 SLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRRE 240
Cdd:COG4717   256 AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLS 335

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 112382239  241 ALGLEQLRARLEDALLRMREeygIQAEERQRVIDCLEDEKATL 283
Cdd:COG4717   336 PEELLELLDRIEELQELLRE---AEELEEELQLEELEQEIAAL 375
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 62-273 1.84e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.83  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    62 EEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAER 141
Cdd:TIGR02169  287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   142 RGLdaahERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQL---------YEDEVRELEEA 212
Cdd:TIGR02169  367 EDL----RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELadlnaaiagIEAKINELEEE 442

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112382239   213 LRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYgIQAEERQRVI 273
Cdd:TIGR02169  443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-AEAEAQARAS 502
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
54-316 3.51e-04

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 44.96  E-value: 3.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   54 AEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEAL 133
Cdd:COG4995   189 AALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLA 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  134 LGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEAL 213
Cdd:COG4995   269 ALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAA 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  214 RRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMADWLRD 293
Cdd:COG4995   349 LAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAA 428

                         250       260
                  ....*....|....*....|....*....
gi 112382239  294 YQDLLQ------VKTGLSLEVATYRALLE 316
Cdd:COG4995   429 RLALLAlieyiiLPDRLYAFVQLYQLLIA 457
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 45-262 5.57e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 5.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    45 GRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEAL 124
Cdd:TIGR02168  285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   125 GARAALEALLGRLQAERRGLdaahERDVRELRARAASLTMHF---RARATGPAAPPPRLREVHDSYALLVAESWRETVQL 201
Cdd:TIGR02168  365 AELEELESRLEELEEQLETL----RSKVAQLELQIASLNNEIerlEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112382239   202 YEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALG-LEQLRARLeDALLRMREEY 262
Cdd:TIGR02168  441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEReLAQLQARL-DSLERLQENL 501
CHAD smart00880
The CHAD domain is an alpha-helical domain functionally associated with some members of the ...
 65-214 5.63e-04

The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family; It has conserved histidines that may chelate metals.


Pssm-ID: 214880 [Multi-domain]  Cd Length: 262  Bit Score: 43.15  E-value: 5.63e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239     65 RSLRQQLDELswataLAEGERDALRRELRELQRLDAEERAargrLDAELGAQQRELQEALGARAALEALLGRLQAERrgl 144
Cdd:smart00880   36 RSALRLFRPV-----LPREAAAALRAELRWLARELGPLRD----LDVLLERLLELLAALLPELPALDALVAALEARR--- 103

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112382239    145 DAAHERDVRELRARAASLTMH-----FRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEALR 214
Cdd:smart00880  104 AAARRALLAALDSARYTALLLdlsrwLATPPWQPAADDKAARPLADFAAKALRRLLRKLRRAFPAARALLDDEAL 178
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
62-313 8.43e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 8.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   62 EEARSLRQQLDELSWATALAEGERDALRReLRELQRLDAEERAARGRLDA-ELGAQQRELQEALGARAALEALLGRLQAE 140
Cdd:COG4913   225 EAADALVEHFDDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAE 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  141 RRGLDAAherdVRELRARAASLtmhfraratgpaappprlrevhdsyallvaeswretvqlyEDEVRELEEALRR---GQ 217
Cdd:COG4913   304 LARLEAE----LERLEARLDAL----------------------------------------REELDELEAQIRGnggDR 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  218 ESRLQAEEETRlcAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMADWLRDYQDL 297
Cdd:COG4913   340 LEQLEREIERL--ERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417

                         250
                  ....*....|....*.
gi 112382239  298 LQVKTGLSLEVATYRA 313
Cdd:COG4913   418 RRELRELEAEIASLER 433
HepA COG0553
Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, ...
 53-295 1.21e-03

Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, and repair];


Pssm-ID: 440319 [Multi-domain]  Cd Length: 682  Bit Score: 43.29  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   53 WAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEA 132
Cdd:COG0553     2 LLLLLLLALGALGLLLTELLLLLRLGALLLELVLARELLLLLLAADALLLLALLLLLELLLLLAALLLLALLLLALSALA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  133 LLGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQLYEDEVRELEEA 212
Cdd:COG0553    82 LLLLRLLLALLLLALLLLLAGLLALALLLLALLGLLLSLALLLLLLLLLLLLLLALLLVLLAALLLLLLLLLLLALLLGR 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  213 LRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQR--VIDCLEDEKATLTLAMADW 290
Cdd:COG0553   162 LLLLALLLLALEALLLLGLLLALALLALLELALLAAEAELLLLLELLLELELLAEAAVDafRLRRLREALESLPAGLKAT 241


                  ....*
gi 112382239  291 LRDYQ 295
Cdd:COG0553   242 LRPYQ 246
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
85-289 1.48e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   85 RDALRRELRELQRLDAEERAargRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAhERDVRELRARAASLTm 164
Cdd:COG4717    48 LERLEKEADELFKPQGRKPE---LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-EAELEELREELEKLE- 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  165 hfraratgpaapppRLREVHDSYallvaESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREALGL 244
Cdd:COG4717   123 --------------KLLQLLPLY-----QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELL 183

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 112382239  245 EQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKATLTLAMAD 289
Cdd:COG4717   184 EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
FUSC pfam04632
Fusaric acid resistance protein family; This family includes a conserved region found in two ...
 137-290 1.61e-03

Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.


Pssm-ID: 428044 [Multi-domain]  Cd Length: 655  Bit Score: 42.66  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   137 LQAERRGL-DAAH---ERDVRELRARAASLTMHFRARAtgPAAPPPRLREVHDSYALLVAEswRETVQLYEDEVRELEEA 212
Cdd:pfam04632  508 LRALRRDLaRAARrraAGARARFESRMLDRLAQLAPRL--AAAPPARRRALRDGLAALRLG--RAVIRLRRALARALPAP 583

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 112382239   213 LRRGQESRLQAEEETRLCAQEAEALRRealgLEQLRARLEDALLRMREEygIQAEERQRVIDCLEDekatLTLAMADW 290
Cdd:pfam04632  584 ARAALDRVLRALARAPAAGRLARRLRA----PARLLRELDAALAALAAD--GAPSALRRALAALHF----LRLALLDP 651
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
57-163 1.73e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   57 QARCAEEARSLRQQLDELSWAtalAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGR 136
Cdd:COG4913   354 LEERERRRARLEALLAALGLP---LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430

                          90       100
                  ....*....|....*....|....*..
gi 112382239  137 LQAeRRGLDAAHERDVRELRARAASLT 163
Cdd:COG4913   431 LER-RKSNIPARLLALRDALAEALGLD 456
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
62-260 2.01e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 42.33  E-value: 2.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   62 EEARSLRQQLDELSWATALAEGERDALRRELREL--QRLDAEERAARGRLDAELGAQQrelQEALGARaaLEALLGRLQA 139
Cdd:PRK02224  251 EELETLEAEIEDLRETIAETEREREELAEEVRDLreRLEELEEERDDLLAEAGLDDAD---AEAVEAR--REELEDRDEE 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  140 ERRGLD------AAHERDVRELRARAASLtmhfRARATGPAAPPPRLREVHDSYALLVAESwRETVQLYEDEVRELEEAL 213
Cdd:PRK02224  326 LRDRLEecrvaaQAHNEEAESLREDADDL----EERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELRERF 400

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 112382239  214 RRGQESRLQAEEETRLCAQEAEALRREalgLEQLRARLEDALLRMRE 260
Cdd:PRK02224  401 GDAPVDLGNAEDFLEELREERDELRER---EAELEATLRTARERVEE 444
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 55-258 2.52e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.41  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    55 EGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQrldAEERaargRLDAELGAQQRELQEALGARAALEALL 134
Cdd:pfam15921  755 EAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLR---SQER----RLKEKVANMEVALDKASLQFAECQDII 827

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   135 GRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREV--HDSYALLVAESWRETVQLYEDEVRELEEA 212
Cdd:pfam15921  828 QRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVpsSQSTASFLSHHSRKTNALKEDPTRDLKQL 907

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 112382239   213 LrrgQESRLQAEEETRLCAQEAEALRReALGLEQLRARLEDALLRM 258
Cdd:pfam15921  908 L---QELRSVINEEPTVQLSKAEDKGR-APSLGALDDRVRDCIIES 949
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 57-282 2.67e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 42.25  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   57 QARCA-EEARSLrQQLDELSWATAlaEGERDALRRELREL--QRLDAEERAArgrlDAELGAQQRElqEALgarAALEAL 133
Cdd:COG3096   417 QAVQAlEKARAL-CGLPDLTPENA--EDYLAAFRAKEQQAteEVLELEQKLS----VADAARRQFE--KAY---ELVCKI 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  134 LGRLQAERRGlDAAHE--RDVRELRARAASLTmHFRARAtgpAAPPPRLREVHDSYALLVAESWRETVQLyeDEVRELEE 211
Cdd:COG3096   485 AGEVERSQAW-QTAREllRRYRSQQALAQRLQ-QLRAQL---AELEQRLRQQQNAERLLEEFCQRIGQQL--DAAEELEE 557

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  212 ALRRGQESRLQAEEETRLCAQEAEALRREalgLEQLRAR-------------LEDALLRMREEYGIQAEERQRVIDC--- 275
Cdd:COG3096   558 LLAELEAQLEELEEQAAEAVEQRSELRQQ---LEQLRARikelaarapawlaAQDALERLREQSGEALADSQEVTAAmqq 634


                  ....*...
gi 112382239  276 -LEDEKAT 282
Cdd:COG3096   635 lLEREREA 642
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 59-282 2.75e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 2.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    59 RCAEEARSLRQQLDELSwATALAEGERDALRRElRELQRLDAEERAARgrldaelgaQQRELQEALGARAALEALLGRLQ 138
Cdd:pfam17380  316 RKLEEAEKARQAEMDRQ-AAIYAEQERMAMERE-RELERIRQEERKRE---------LERIRQEEIAMEISRMRELERLQ 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   139 AERRgldAAHERDVRELRA-RAASLTMHFRARATgpaapPPRLREVHDSYALLVAESWRETVQLYEDEVRELE-----EA 212
Cdd:pfam17380  385 MERQ---QKNERVRQELEAaRKVKILEEERQRKI-----QQQKVEMEQIRAEQEEARQREVRRLEEERAREMErvrleEQ 456

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112382239   213 LRRGQESRL-QAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEYGIQAEERQRVIDCLEDEKAT 282
Cdd:pfam17380  457 ERQQQVERLrQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQK 527
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
61-163 3.58e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   61 AEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARG---------RLDAELGAQQRELQEALG------ 125
Cdd:COG3206   211 SEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPellqspviqQLRAQLAELEAELAELSArytpnh 290

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 112382239  126 -----ARAALEALLGRLQAERRGLDAAHERDVRELRARAASLT 163
Cdd:COG3206   291 pdviaLRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ 333
mukB PRK04863
chromosome partition protein MukB;
62-253 3.96e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.48  E-value: 3.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   62 EEARSLRQQLDELSwatALAEgERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEAlgarAALEALLGRLQAER 141
Cdd:PRK04863  496 DVARELLRRLREQR---HLAE-QLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE----DELEQLQEELEARL 567

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  142 RGLDAAherdVRELRARAASLTMH---FRARATGPAAPPPRLREVHDSYALLVAESWR--ETVQLYEDEVRELEEALRRG 216
Cdd:PRK04863  568 ESLSES----VSEARERRMALRQQleqLQARIQRLAARAPAWLAAQDALARLREQSGEefEDSQDVTEYMQQLLEREREL 643

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 112382239  217 QESRLQAEEETRLCAQEAEAL-RREALGLEQLRARLED 253
Cdd:PRK04863  644 TVERDELAARKQALDEEIERLsQPGGSEDPRLNALAER 681
COG3920 COG3920
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ...
 28-240 4.88e-03

Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];


Pssm-ID: 443125 [Multi-domain]  Cd Length: 495  Bit Score: 41.04  E-value: 4.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   28 RVRELERENLLLEEELRGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARG 107
Cdd:COG3920    89 LLLLLAAAALALALLLAALAGLLLLAALLLLRLVALLAALALLALLLLLLLLLAILALAELAVALAELAAALLLLAEELA 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  108 RLDAELGAQQRELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSY 187
Cdd:COG3920   169 ALRLAAAALLLLLAALLDLGLALAALAAAALLALLLALELLLALLLLLLLLLALLLVLLAALLRLRAAVLEELERRRRAR 248

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 112382239  188 ALLVAESWRETVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRRE 240
Cdd:COG3920   249 GLGRLLLLLLLLLLLLRALLLLAAGIRLVITERKRAEEELEASLEEKELLLRE 301
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
58-262 5.07e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 5.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   58 ARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLD-AELGAQQRELQEALGArAALEALLGR 136
Cdd:COG4717   312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGV-EDEEELRAA 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  137 LQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLvaeswRETVQLYEDEVRELEEALRRG 216
Cdd:COG4717   391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEL-----EEELEELREELAELEAELEQL 465

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 112382239  217 QESRL--QAEEETRLCAQEAEALRREALGLEQLRARLEDALLRMREEY 262
Cdd:COG4717   466 EEDGElaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 77-261 7.23e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 40.81  E-value: 7.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   77 ATALAEGErdaLRRELRELQrldaeerAARGRLDAElgaQQRELQEALGARAALEALLGRLQAERRGLDAaHERDVRELR 156
Cdd:PRK10929   20 ATAPDEKQ---ITQELEQAK-------AAKTPAQAE---IVEALQSALNWLEERKGSLERAKQYQQVIDN-FPKLSAELR 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  157 ARAASLTMHFRARATGPAAPP-----------------------PRLREVHDSYALLVaeswretvQLYEDEVRELEEAL 213
Cdd:PRK10929   86 QQLNNERDEPRSVPPNMSTDAleqeilqvssqlleksrqaqqeqDRAREISDSLSQLP--------QQQTEARRQLNEIE 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 112382239  214 RR--GQESRLQAEEETRLCAQEAEALRREA----LGLEQLRARLEDALLRMREE 261
Cdd:PRK10929  158 RRlqTLGTPNTPLAQAQLTALQAESAALKAlvdeLELAQLSANNRQELARLRSE 211
FUSC pfam04632
Fusaric acid resistance protein family; This family includes a conserved region found in two ...
 64-229 8.39e-03

Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.


Pssm-ID: 428044 [Multi-domain]  Cd Length: 655  Bit Score: 40.35  E-value: 8.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    64 ARSLRQQLDELS-WATALAEGERDALRRElRELQRL-----------------DAEERAARGRLDAELGAQQRELQEALG 125
Cdd:pfam04632  158 RARLRARLRDALrLAAAALAGAPGAEAFE-AARLRLaadilalealrshaafeSPRGRARARALRRLLARMLALLPRLRS 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   126 ARAALEALLGRLQAERRGLDAAherdVRELRARAASLTMHfrARATGPAAPPPRLREVHDSYALLVAESWRETVQLYE-- 203
Cdd:pfam04632  237 LARLLARLRTEGAGTVPELAAL----LDELAAWEAALAAE--ALQAALAALRARLRALRPALPLDFDTAAELLARLADll 310

                          170       180
                   ....*....|....*....|....*.
gi 112382239   204 DEVRELEEALRRGQESRLQAEEETRL 229
Cdd:pfam04632  311 AELAEALASCRALRHPIAQGARPARL 336
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
62-251 8.83e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 8.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   62 EEARSLRQQLDELSWATALAEGERDALRRELRELQRLDA--EERAARGRLDAELGAQQRELQEALGARAALEALLGRLQa 139
Cdd:COG4717    88 EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEERLEELRELEEELE- 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239  140 errgldaAHERDVRELRARAASLTMHFRARAtgpaappprlrEVHDSYALLVAESWRETVQLYEDEVRELEEALRRgQES 219
Cdd:COG4717   167 -------ELEAELAELQEELEELLEQLSLAT-----------EEELQDLAEELEELQQRLAELEEELEEAQEELEE-LEE 227

                         170       180       190
                  ....*....|....*....|....*....|..
gi 112382239  220 RLQAEEETRLCAQEAEALRREALGLEQLRARL 251
Cdd:COG4717   228 ELEQLENELEAAALEERLKEARLLLLIAAALL 259
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 57-210 9.10e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 9.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   57 QARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLgR 136
Cdd:COG1196   629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-R 707

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112382239  137 LQAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLrEVHDSYALLVAESWRETVQLYEDEVRELE 210
Cdd:COG1196   708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPDLEELERELERLEREIEALG 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 3-261 9.63e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 9.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239     3 SWRLQTGPEKAELQELNARLYDYVCRVRELERENLLLEEELRgrrgreglwaegqaRCAEEARSLRQQLDELSWATALAE 82
Cdd:TIGR02168  800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE--------------DLEEQIEELSEDIESLAAEIEELE 865

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239    83 GERDALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERrgldAAHERDVRELRARAASL 162
Cdd:TIGR02168  866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL----AQLELRLEGLEVRIDNL 941

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112382239   163 TMHFRARATGPAAPPPRLREVHDSYallvaeswretVQLYEDEVRELEEALRRGQESRLQAEEETRLCAQEAEALRREAL 242
Cdd:TIGR02168  942 QERLSEEYSLTLEEAEALENKIEDD-----------EEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010

                          250
                   ....*....|....*....
gi 112382239   243 GLEQLRARLEDALLRMREE 261
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEIDRE 1029
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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