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large ribosomal subunit protein uL18m isoform 1 [Homo sapiens]
50S ribosomal protein L18( domain architecture ID 10087302)
50S ribosomal protein L18 is part of the 5S rRNA/L5/L18/L25 subcomplex; it contacts 5S and 23S rRNAs
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L18_L5e | cd00432 | Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of ... |
68-170 | 4.82e-30 | |||
Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. : Pssm-ID: 238246 Cd Length: 103 Bit Score: 105.70 E-value: 4.82e-30
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L18_L5e | cd00432 | Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of ... |
68-170 | 4.82e-30 | |||
Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Pssm-ID: 238246 Cd Length: 103 Bit Score: 105.70 E-value: 4.82e-30
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RplR | COG0256 | Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18 ... |
80-141 | 8.60e-11 | |||
Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18 is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440026 Cd Length: 119 Bit Score: 56.26 E-value: 8.60e-11
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rpl18 | CHL00139 | ribosomal protein L18; Validated |
80-146 | 2.45e-08 | |||
ribosomal protein L18; Validated Pssm-ID: 214373 Cd Length: 109 Bit Score: 49.64 E-value: 2.45e-08
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Ribosomal_L18p | pfam00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast; This family includes the large ... |
80-146 | 1.03e-06 | |||
Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast; This family includes the large subunit ribosomal proteins from bacteria, archaea, the mitochondria and the chloroplast. It does not include the 60S L18 or L5 proteins from Metazoa. Pssm-ID: 395691 Cd Length: 116 Bit Score: 45.43 E-value: 1.03e-06
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L18_L5e | cd00432 | Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of ... |
68-170 | 4.82e-30 | |||
Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Pssm-ID: 238246 Cd Length: 103 Bit Score: 105.70 E-value: 4.82e-30
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RplR | COG0256 | Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18 ... |
80-141 | 8.60e-11 | |||
Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18 is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440026 Cd Length: 119 Bit Score: 56.26 E-value: 8.60e-11
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rpl18 | CHL00139 | ribosomal protein L18; Validated |
80-146 | 2.45e-08 | |||
ribosomal protein L18; Validated Pssm-ID: 214373 Cd Length: 109 Bit Score: 49.64 E-value: 2.45e-08
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Ribosomal_L18p | pfam00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast; This family includes the large ... |
80-146 | 1.03e-06 | |||
Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast; This family includes the large subunit ribosomal proteins from bacteria, archaea, the mitochondria and the chloroplast. It does not include the 60S L18 or L5 proteins from Metazoa. Pssm-ID: 395691 Cd Length: 116 Bit Score: 45.43 E-value: 1.03e-06
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Blast search parameters | ||||
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