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Conserved domains on  [gi|9628122|ref|NP_042708|]
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pU104L precursor [African swine fever virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
v110 super family cl03291
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 21-100 1.02e-17

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


The actual alignment was detected with superfamily member pfam01639:

Pssm-ID: 279910  Cd Length: 102  Bit Score: 71.44  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9628122     21 STDNLLEEELRYWCQYVKNCRFCWTCQDGLCKNKVLKDMSSVQEHSYpMEHCMIHR---QCKYIRDGPIFQVECTMQTSD 97
Cdd:pfam01639  18 ITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDY-IRDCWVSRwpnKCSYYIEKIYYHNTHIMECSQ 96


                  ...
gi 9628122     98 ATH 100
Cdd:pfam01639  97 PTH 99
 
Name Accession Description Interval E-value
v110 pfam01639
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 21-100 1.02e-17

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


Pssm-ID: 279910  Cd Length: 102  Bit Score: 71.44  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9628122     21 STDNLLEEELRYWCQYVKNCRFCWTCQDGLCKNKVLKDMSSVQEHSYpMEHCMIHR---QCKYIRDGPIFQVECTMQTSD 97
Cdd:pfam01639  18 ITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDY-IRDCWVSRwpnKCSYYIEKIYYHNTHIMECSQ 96


                  ...
gi 9628122     98 ATH 100
Cdd:pfam01639  97 PTH 99
 
Name Accession Description Interval E-value
v110 pfam01639
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 21-100 1.02e-17

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


Pssm-ID: 279910  Cd Length: 102  Bit Score: 71.44  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9628122     21 STDNLLEEELRYWCQYVKNCRFCWTCQDGLCKNKVLKDMSSVQEHSYpMEHCMIHR---QCKYIRDGPIFQVECTMQTSD 97
Cdd:pfam01639  18 ITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDY-IRDCWVSRwpnKCSYYIEKIYYHNTHIMECSQ 96


                  ...
gi 9628122     98 ATH 100
Cdd:pfam01639  97 PTH 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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