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Conserved domains on  [gi|9627699|ref|NP_042222|]
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hypothetical protein VARVgp178 [Variola virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02634 PHA02634
hypothetical protein; Provisional
 49-97 3.06e-22

hypothetical protein; Provisional


:

Pssm-ID: 165017  Cd Length: 49  Bit Score: 81.36  E-value: 3.06e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 9627699   49 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 97
Cdd:PHA02634  1 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 49
 
Name Accession Description Interval E-value
PHA02634 PHA02634
hypothetical protein; Provisional
 49-97 3.06e-22

hypothetical protein; Provisional


Pssm-ID: 165017  Cd Length: 49  Bit Score: 81.36  E-value: 3.06e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 9627699   49 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 97
Cdd:PHA02634  1 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 49
Poxvirus_B22R pfam04395
Poxvirus B22R protein; This is highly conserved C-rich, central region of poxvirus proteins ...
 24-92 2.42e-06

Poxvirus B22R protein; This is highly conserved C-rich, central region of poxvirus proteins from eg, Fowlpox virus, Myxoma virus, Lumpy skin disease, Variola virus and other members of the Poxviridae family of double-stranded, no-RNA stage poxviruses. There are three pairs of conserved cysteine residues.


Pssm-ID: 282277  Cd Length: 204  Bit Score: 43.56  E-value: 2.42e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9627699     24 INSCVNSSLSLQIAVVRIPVLFNKTMEQLGITLGSDLEAYFMCKLQ-ELNCDASILLNKASKNVMDRQLS 92
Cdd:pfam04395   1 TSNCEKCSMELMAEVVGVPEEFNNTLKNLGIKSDNLTELYYLCMLTgNPDCGNYIFLNAKTKVITLEVLS 70
 
Name Accession Description Interval E-value
PHA02634 PHA02634
hypothetical protein; Provisional
 49-97 3.06e-22

hypothetical protein; Provisional


Pssm-ID: 165017  Cd Length: 49  Bit Score: 81.36  E-value: 3.06e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 9627699   49 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 97
Cdd:PHA02634  1 MEQLGITLGSDLEAYFMCKLQELNCDASILLNKASKNVMDRQLSKTPTR 49
Poxvirus_B22R pfam04395
Poxvirus B22R protein; This is highly conserved C-rich, central region of poxvirus proteins ...
 24-92 2.42e-06

Poxvirus B22R protein; This is highly conserved C-rich, central region of poxvirus proteins from eg, Fowlpox virus, Myxoma virus, Lumpy skin disease, Variola virus and other members of the Poxviridae family of double-stranded, no-RNA stage poxviruses. There are three pairs of conserved cysteine residues.


Pssm-ID: 282277  Cd Length: 204  Bit Score: 43.56  E-value: 2.42e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9627699     24 INSCVNSSLSLQIAVVRIPVLFNKTMEQLGITLGSDLEAYFMCKLQ-ELNCDASILLNKASKNVMDRQLS 92
Cdd:pfam04395   1 TSNCEKCSMELMAEVVGVPEEFNNTLKNLGIKSDNLTELYYLCMLTgNPDCGNYIFLNAKTKVITLEVLS 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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