|
Name |
Accession |
Description |
Interval |
E-value |
| 2A060601 |
TIGR00917 |
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in ... |
33-1293 |
0e+00 |
|
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. [Transport and binding proteins, Other]
Pssm-ID: 273337 [Multi-domain] Cd Length: 1205 Bit Score: 830.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 33 CAFYDECGKNPELSGslmtlsnVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTR 112
Cdd:TIGR00917 1 CAMYDICGARSDGKV-------LNCPYNIPSVKPPDLLSSLIQSLCQYSHPTISGNVCCTETQFDTLRSNVQQAIPFIVR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 113 CPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQlpAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVY 192
Cdd:TIGR00917 74 CPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKTNS--TVDGIQYYITDDFAAGMYNSCKNVKFGSSNSRALDFLGGGA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 193 GSAlCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQAvgSGIQPLNEGVARCNESQGDDVATCSCQDCAASCPAIARPQAL 272
Cdd:TIGR00917 152 KNF-KEWFNWIGQKAGVNLPGAPYGIAFLPTPCPVS--SGMRPMNVSIYSCGDESLGCSCGDCPSAATCSCKAKVPTQKK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 273 DS-TFYLGQMPGSLVLIIILcsvFAVVTILLVGFRVAPARDKSK------------------MVDPKKGTSLSDKLSFST 333
Cdd:TIGR00917 229 HScSIKLGVKCVDFILAILY---IVLVSVFLGGGLLHPVRGKKKtsqmgtlseadgeinsvnQQKDQNTPQRNWGQLSTV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 334 HTLLGQFFQGWGTWVASWPLTILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVILT 413
Cdd:TIGR00917 306 QGHLARFFGKYGIWVARHPTLVICLSVSVVLLLCVGLIRFKVETRPVKLWVAPGSRAALEKQYFDTHFGPFYRIEQLIIA 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 414 APNRSSYrydslllgpKNFSGILDLDLLLELLELQERLrhLQVWSPEAQRNISLQDICYAPLNPdntslYDCCINSLLQY 493
Cdd:TIGR00917 386 TVQTSSH---------EKAPEILTDDNLKLLFDIQKKV--SQLFANYEGELITLDSPCFKPNHP-----YNCFIYSTCKK 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 494 FQNNRTLLLLTANQTLMGqtsqVDWKDHFLYCANAPLtfkdgtalalSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMT 573
Cdd:TIGR00917 450 LQNMYSKLKPENYDDYGG----VDYVKYCFEHFTSPE----------SCLSAFGGPVDPTTVLGGFSGNNFSEASAFVVT 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 574 FSLNNYPAGDPRLAQAKLWEEAFLEEMRAFQRRMAgMFQVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGS 653
Cdd:TIGR00917 516 FPVNNFVNKTNKTEKAVAWEKAFIQLAKDELLPMV-QATISFSAERSIEDELKRESTADVITIAISYLVMFAYISLTLGD 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 654 YSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRLPRRPGEPR- 732
Cdd:TIGR00917 595 SPRLKSLYVTSKVLLGLSGILIVMLSVLGSVGVFSAVGLKSTLIIMEVIPFLVLAVGVDNIFILVFFYFYLEYFYRQVGv 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 733 --------EVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEA 804
Cdd:TIGR00917 675 dneqeltlERRLSRALMEVGPSITLASLSEILAFALGALIKMPAVRVFSMFAVLAVFLDFLLQITAFVALLVLDFKRTED 754
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 805 SRLDVCCCVKPQELPPPGQG------EGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALP 878
Cdd:TIGR00917 755 KRVDCFPCIKTSKSSISAEKgsgqrkAGLLTRYFKEVYAPVLLHWIVKIVVIAFFVGLLMAGIALSTRVEIGLDQQIVLP 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 879 KDSYLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGMNAICSSAGCNNFSFTQkiqyatEFPEQSYLAIPASSWVDDFI 958
Cdd:TIGR00917 835 QDSYLQIYFASLTPLLEVGPPFYIVIKGDYNYTDFESQNKLCTMGGCDKDSIVN------VFNNLSYIAKPASSWLDDYL 908
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 959 DWLTP-SSCCRLYisgPNKDKFCPSTVNSlnCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVN 1037
Cdd:TIGR00917 909 VWLSPqASCCCRK---FTNGTFCNGPDPQ--CFRCADLSSDAQGRPSTTQFKEKLPWFLNALPSADCAKGGHAAYSSAVD 983
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1038 LtsdgqvldtvailsprLEYSGTISAhcnlylldstSRFMAYHKPLKNSQDYTEALRAARELAANITADLrkvpgtdpAF 1117
Cdd:TIGR00917 984 L----------------QGYATIIQA----------SSFRTYHTPLNTQVDFINAMRAAQEFAAKVSRSS--------KM 1029
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1118 EVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLIN 1197
Cdd:TIGR00917 1030 EVYPYSVFYVFFEQYLTIWKTAIINLSIALGAIFIVCLFLLQLNALSVVNLIMSVGMAVVFCVGIMHLWSISLNAVSVVN 1109
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1198 LVSAVGMSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLG 1277
Cdd:TIGR00917 1110 SVMHKGIAIEFCTHINAQFSTGKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSRSEIFVVYYFRMYLALVLLG 1189
|
1290
....*....|....*.
gi 156231351 1278 LLHGLVFLPVILSYVG 1293
Cdd:TIGR00917 1190 FLHGLVFLPVLLSVLG 1205
|
|
| NPC1_N |
pfam16414 |
Niemann-Pick C1 N terminus; This is the N-terminal domain of Niemann-Pick C1 family proteins. ... |
31-283 |
4.39e-94 |
|
Niemann-Pick C1 N terminus; This is the N-terminal domain of Niemann-Pick C1 family proteins. This family of proteins mediates transport of cholesterol from the intestinal lumen to enterocytes. This domain contains a cholesterol-binding pocket.
Pssm-ID: 465110 Cd Length: 239 Bit Score: 302.60 E-value: 4.39e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 31 GYCAFYDECGKNPELSGSLmtlsnvSCLSNTPARKITGDHLILLQKICPRLYTGpNTQACCSAKQLVSLEASLSITKALL 110
Cdd:pfam16414 1 GRCAWYGECGKKSLFGKDL------PCPYNGPAKPLDDEVRDLLAELCPLLFAD-ETPVCCDADQLNTLRSNLKLAEGLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 111 TRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLpAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCG 190
Cdd:pfam16414 74 SRCPACKKNFANLFCEFTCSPNQSTFLNVTKTKKSVDGKE-YVTELDYYISEEYASGFYDSCKDVKFPATNGYAMDLICG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 191 VYgsalCNAQRWLNFQGDTGNGLAPLDITFHLlePGQAVGSGIQPLNEGVARCNESQGDDVAtCSCQDCAASCPAIARPQ 270
Cdd:pfam16414 153 GA----CNYTRWLKFMGDKKNGGSPFQINFPD--PPEEDPSGMVPLNPNTKDCNESYDASYA-CSCVDCPLSCPPPPQLP 225
|
250
....*....|....
gi 156231351 271 ALDS-TFYLGQMPG 283
Cdd:pfam16414 226 PPPHgPCKVGGLDG 239
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
558-797 |
9.82e-17 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 86.07 E-value: 9.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 558 GYKGKDYSE-AEALIMTFSLNNYPAGDPrLAQAKLWE--EAFLEEMRA--FQRRMAGMFQVTfmaersleDEINRTTAED 632
Cdd:COG1033 149 LYVGRLVSPdGKATLIVVTLDPDPLSSD-LDRKEVVAeiRAIIAKYEDpgVEVYLTGFPVLR--------GDIAEAIQSD 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 633 LPIF-ATSYIVIFLYISLALGSYSSWsrvmvdskatlgLGGVAVVLGAVMAAMGFFSYLGIRSSlVILQVVPFLVLSVGA 711
Cdd:COG1033 220 LAIFfPLALLLILLLLFLFFRSLRGV------------LLPLLVVLLAVIWTLGLMGLLGIPLS-PLTILVPPLLLAIGI 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 712 DNIFIFVLEYQRLpRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAF 791
Cdd:COG1033 287 DYGIHLLNRYREE-RRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLL 365
|
....*.
gi 156231351 792 VALLSL 797
Cdd:COG1033 366 PALLSL 371
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| 2A060601 |
TIGR00917 |
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in ... |
33-1293 |
0e+00 |
|
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. [Transport and binding proteins, Other]
Pssm-ID: 273337 [Multi-domain] Cd Length: 1205 Bit Score: 830.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 33 CAFYDECGKNPELSGslmtlsnVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTR 112
Cdd:TIGR00917 1 CAMYDICGARSDGKV-------LNCPYNIPSVKPPDLLSSLIQSLCQYSHPTISGNVCCTETQFDTLRSNVQQAIPFIVR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 113 CPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQlpAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVY 192
Cdd:TIGR00917 74 CPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKTNS--TVDGIQYYITDDFAAGMYNSCKNVKFGSSNSRALDFLGGGA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 193 GSAlCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQAvgSGIQPLNEGVARCNESQGDDVATCSCQDCAASCPAIARPQAL 272
Cdd:TIGR00917 152 KNF-KEWFNWIGQKAGVNLPGAPYGIAFLPTPCPVS--SGMRPMNVSIYSCGDESLGCSCGDCPSAATCSCKAKVPTQKK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 273 DS-TFYLGQMPGSLVLIIILcsvFAVVTILLVGFRVAPARDKSK------------------MVDPKKGTSLSDKLSFST 333
Cdd:TIGR00917 229 HScSIKLGVKCVDFILAILY---IVLVSVFLGGGLLHPVRGKKKtsqmgtlseadgeinsvnQQKDQNTPQRNWGQLSTV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 334 HTLLGQFFQGWGTWVASWPLTILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVILT 413
Cdd:TIGR00917 306 QGHLARFFGKYGIWVARHPTLVICLSVSVVLLLCVGLIRFKVETRPVKLWVAPGSRAALEKQYFDTHFGPFYRIEQLIIA 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 414 APNRSSYrydslllgpKNFSGILDLDLLLELLELQERLrhLQVWSPEAQRNISLQDICYAPLNPdntslYDCCINSLLQY 493
Cdd:TIGR00917 386 TVQTSSH---------EKAPEILTDDNLKLLFDIQKKV--SQLFANYEGELITLDSPCFKPNHP-----YNCFIYSTCKK 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 494 FQNNRTLLLLTANQTLMGqtsqVDWKDHFLYCANAPLtfkdgtalalSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMT 573
Cdd:TIGR00917 450 LQNMYSKLKPENYDDYGG----VDYVKYCFEHFTSPE----------SCLSAFGGPVDPTTVLGGFSGNNFSEASAFVVT 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 574 FSLNNYPAGDPRLAQAKLWEEAFLEEMRAFQRRMAgMFQVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGS 653
Cdd:TIGR00917 516 FPVNNFVNKTNKTEKAVAWEKAFIQLAKDELLPMV-QATISFSAERSIEDELKRESTADVITIAISYLVMFAYISLTLGD 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 654 YSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRLPRRPGEPR- 732
Cdd:TIGR00917 595 SPRLKSLYVTSKVLLGLSGILIVMLSVLGSVGVFSAVGLKSTLIIMEVIPFLVLAVGVDNIFILVFFYFYLEYFYRQVGv 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 733 --------EVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEA 804
Cdd:TIGR00917 675 dneqeltlERRLSRALMEVGPSITLASLSEILAFALGALIKMPAVRVFSMFAVLAVFLDFLLQITAFVALLVLDFKRTED 754
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 805 SRLDVCCCVKPQELPPPGQG------EGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALP 878
Cdd:TIGR00917 755 KRVDCFPCIKTSKSSISAEKgsgqrkAGLLTRYFKEVYAPVLLHWIVKIVVIAFFVGLLMAGIALSTRVEIGLDQQIVLP 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 879 KDSYLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGMNAICSSAGCNNFSFTQkiqyatEFPEQSYLAIPASSWVDDFI 958
Cdd:TIGR00917 835 QDSYLQIYFASLTPLLEVGPPFYIVIKGDYNYTDFESQNKLCTMGGCDKDSIVN------VFNNLSYIAKPASSWLDDYL 908
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 959 DWLTP-SSCCRLYisgPNKDKFCPSTVNSlnCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVN 1037
Cdd:TIGR00917 909 VWLSPqASCCCRK---FTNGTFCNGPDPQ--CFRCADLSSDAQGRPSTTQFKEKLPWFLNALPSADCAKGGHAAYSSAVD 983
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1038 LtsdgqvldtvailsprLEYSGTISAhcnlylldstSRFMAYHKPLKNSQDYTEALRAARELAANITADLrkvpgtdpAF 1117
Cdd:TIGR00917 984 L----------------QGYATIIQA----------SSFRTYHTPLNTQVDFINAMRAAQEFAAKVSRSS--------KM 1029
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1118 EVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLIN 1197
Cdd:TIGR00917 1030 EVYPYSVFYVFFEQYLTIWKTAIINLSIALGAIFIVCLFLLQLNALSVVNLIMSVGMAVVFCVGIMHLWSISLNAVSVVN 1109
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1198 LVSAVGMSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLG 1277
Cdd:TIGR00917 1110 SVMHKGIAIEFCTHINAQFSTGKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSRSEIFVVYYFRMYLALVLLG 1189
|
1290
....*....|....*.
gi 156231351 1278 LLHGLVFLPVILSYVG 1293
Cdd:TIGR00917 1190 FLHGLVFLPVLLSVLG 1205
|
|
| NPC1_N |
pfam16414 |
Niemann-Pick C1 N terminus; This is the N-terminal domain of Niemann-Pick C1 family proteins. ... |
31-283 |
4.39e-94 |
|
Niemann-Pick C1 N terminus; This is the N-terminal domain of Niemann-Pick C1 family proteins. This family of proteins mediates transport of cholesterol from the intestinal lumen to enterocytes. This domain contains a cholesterol-binding pocket.
Pssm-ID: 465110 Cd Length: 239 Bit Score: 302.60 E-value: 4.39e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 31 GYCAFYDECGKNPELSGSLmtlsnvSCLSNTPARKITGDHLILLQKICPRLYTGpNTQACCSAKQLVSLEASLSITKALL 110
Cdd:pfam16414 1 GRCAWYGECGKKSLFGKDL------PCPYNGPAKPLDDEVRDLLAELCPLLFAD-ETPVCCDADQLNTLRSNLKLAEGLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 111 TRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLpAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCG 190
Cdd:pfam16414 74 SRCPACKKNFANLFCEFTCSPNQSTFLNVTKTKKSVDGKE-YVTELDYYISEEYASGFYDSCKDVKFPATNGYAMDLICG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 191 VYgsalCNAQRWLNFQGDTGNGLAPLDITFHLlePGQAVGSGIQPLNEGVARCNESQGDDVAtCSCQDCAASCPAIARPQ 270
Cdd:pfam16414 153 GA----CNYTRWLKFMGDKKNGGSPFQINFPD--PPEEDPSGMVPLNPNTKDCNESYDASYA-CSCVDCPLSCPPPPQLP 225
|
250
....*....|....
gi 156231351 271 ALDS-TFYLGQMPG 283
Cdd:pfam16414 226 PPPHgPCKVGGLDG 239
|
|
| Sterol-sensing |
pfam12349 |
Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins ... |
661-814 |
1.45e-60 |
|
Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins (SREBPs) are membrane-bound transcription factors that promote lipid synthesis in animal cells. They are embedded in the membranes of the endoplasmic reticulum (ER) in a helical hairpin orientation and are released from the ER by a two-step proteolytic process. Proteolysis begins when the SREBPs are cleaved at Site-1, which is located at a leucine residue in the middle of the hydrophobic loop in the lumen of the ER. Upon proteolytic processing SREBP can activate the expression of genes involved in cholesterol biosynthesis and uptake. SCAP stimulates cleavage of SREBPs via fusion of the their two C-termini. This domain is the transmembrane region that traverses the membrane eight times and is the sterol-sensing domain of the cleavage protein. WD40 domains are found towards the C-terminus.
Pssm-ID: 463544 [Multi-domain] Cd Length: 153 Bit Score: 204.35 E-value: 1.45e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 661 MVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRLPRRPGEPRevHIGRAL 740
Cdd:pfam12349 1 MVKSKFGLGLAGVIIVLASVASSLGLCAYFGLPLTLIISEVIPFLVLAIGVDNIFLLVKAVVRTPRSLDVSE--RIAEAL 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 156231351 741 GRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVK 814
Cdd:pfam12349 79 GEVGPSITLTSLTEILAFLLGALTDMPAVQEFCLFAAVAVLFDFLLQMTFFVAVLSLDIRRLESNRLDVACCIR 152
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
598-1266 |
2.94e-53 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 201.43 E-value: 2.94e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 598 EEMRAFQRRMAGMF----------QVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGSYSSWSRVMVDSKAT 667
Cdd:pfam02460 171 EEDSKEWEDELSQLlhnkyasehiQFTIFHDQILNDELVRNALTLTPFFVIGFFLLLTFSIIVSVTLSSYTIDWVRSKPI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 668 LGLGGVAVVLGAVMAAMGFFSYLGIRSSlVILQVVPFLVLSVGADNIFIFVLEYQRLPRRPGEPREvhIGRALGRVAPSM 747
Cdd:pfam02460 251 LAALGLLSPVMAIVSSFGLLFWMGFPFN-SIVCVTPFLVLAIGVDDMFLMVAAWQRTTATLSVKKR--MGEALSEAGVSI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 748 LLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASR--LDVCCCVKPQEL------P 819
Cdd:pfam02460 328 TITSLTDVLSFGIGTYTPTPAIQLFCAYTAVAIFFDFIYQITFFAAIMAICAKPEAEGRhcLFVWATSSPQRIdsegseP 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 820 PPGQG-EGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDSYLLDYFLFLNRYFevga 898
Cdd:pfam02460 408 DKSHNiEQLKSRFFLDIYCPFLLNPSVRVCMLVLFVVYIAIAIYGCVNIKEGLEPDKLVLEDSPLVEYLSLREKHF---- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 899 pvyfvttlgynfsseagmnaicssagcnnfsftqkiqyateFPEqsYLAipasswvddfidwltpsscCRLYISGPnKDK 978
Cdd:pfam02460 484 -----------------------------------------WPE--GLQ-------------------IQVAVNNP-PNL 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 979 FCPSTVNSLNCLKNCMSITMGSVRPSVEQFhkYLPWFLNDRpnikcpkgglaaYSTSVNLTSDGQVLDTVAILSPRLEYS 1058
Cdd:pfam02460 501 TIPESRDRMNEMVDEFENTPYSLGPNSTLF--WLREYENFL------------STLNMEEEEDEEKEWSYGNLPSFLKAP 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1059 GTISAHCNLYLLDSTSRFMAYH-----KPLKNSQDYTEalraarelaanITADLRKVPGTDPAFEVFPYTITNVFYEQYL 1133
Cdd:pfam02460 567 GNSHWAGDLVWDDNTTMVTKFRftlagKGLSTWNDRTR-----------ALQEWRSIADQYPEFNVTVFDEDAPFADQYL 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1134 TILPEGLFMLSLCLVPTFAVsCLLLGLDLRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHIT 1213
Cdd:pfam02460 636 TILPSTIQNIVITLICMFIV-CFLFIPNPPCVFVITLAIASIDIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHIA 714
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 156231351 1214 RSFAISTKPTWLERAKEATISMGSAVFAGvAMTNLPGILVLGLAKAQLIQIFF 1266
Cdd:pfam02460 715 YHFVRSRGDTPAERVVDALEALGWPVFQG-GLSTILGVLVLLFVPSYMVVVFF 766
|
|
| 2A060602 |
TIGR00918 |
The Eukaryotic (Putative) Sterol Transporter (EST) Family; |
592-1299 |
6.98e-35 |
|
The Eukaryotic (Putative) Sterol Transporter (EST) Family;
Pssm-ID: 273338 [Multi-domain] Cd Length: 1145 Bit Score: 145.41 E-value: 6.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 592 WEEAFLEEMRAFQRRMAGmFQVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGSYSSwsrvmVDSKATLGLG 671
Cdd:TIGR00918 359 WQRNFSEEVQQSLPKNSS-QKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRWDC-----AKSQGSVGLA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 672 GVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEY-QRLPRRPGEPRevhIGRALGRVAPSMLLC 750
Cdd:TIGR00918 433 GVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFsETGQNIPFEER---TGECLKRTGASVVLT 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 751 SLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDV-CCCVKP------QELP---- 819
Cdd:TIGR00918 510 SISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIfCCFFSPcsarviQIEPqaya 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 820 -----------------------------------------------------PPGQGEGL------------------- 827
Cdd:TIGR00918 590 dgsappvysshmqstvqlrteydpgtqhyyttneprshlsvqpsdplscqspdIAGSTRDLlsqfedskaaclslpcarw 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 828 -LLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDSYLLDYFLFLNRYFEVgAPVYFVTTL 906
Cdd:TIGR00918 670 tLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNMYAVTQG 748
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 907 GYNFSSeagmnaicssagcnnfsftqkIQYATEFPEQSYLAIPA----------SSWVDDFIDWLtpssccrlyiSGPNK 976
Cdd:TIGR00918 749 NFDYPT---------------------QQQLLYDLHQSFSSVKYvlkedngqlpRMWLHYFRDWL----------QGLQK 797
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 977 --DKFCPSTVNSLNCLKNCMSITMGSVRPSVEQFHKYLPwflndrpnikcpkgglaaysTSVNLTSDGQVLDTVAILSPR 1054
Cdd:TIGR00918 798 afDEDWRDGRITKENYRNGSDDAVLAYKLLVQTGHRDKP--------------------VDKEQLTTQRLVNADGIINPN 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1055 LEYSGTISAHCNLYLLDSTSRFMAYHKP---LKNSQDYTEALRAARELAANITAD-------LRKVPGTDPAFE------ 1118
Cdd:TIGR00918 858 AFYIYLSAWVSNDPVAYAASQANIYPHPpewLHDKNDYDPENLRIPAAEPLEYAQfpfylngLRETSQFVEAIEhvraic 937
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1119 ---------VFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLgLDLRSGLLNLLSIVMILVDTVGFMALWGIS 1189
Cdd:TIGR00918 938 nnyegfglpSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLL-LNPWTAGLIVLVLALMTVELFGMMGLLGIK 1016
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1190 YNAVSLINLVSAVGMSVEFVSHITRSFAISTKptwlERAKEATISMgSAVFAGV---AMTNLPGILVLGLAKAQLIQIFF 1266
Cdd:TIGR00918 1017 LSAIPVVILIASVGIGVEFTVHIALGFLTAIG----DRNRRAVLAL-EHMFAPVldgALSTLLGVLMLAGSEFDFIVRYF 1091
|
810 820 830
....*....|....*....|....*....|....*
gi 156231351 1267 FRLNLLITLLGLLHGLVFLPVILSYVGP--DVNPA 1299
Cdd:TIGR00918 1092 FAVLAVLTCLGVLNGLVLLPVLLSMFGPepEVSPA 1126
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
558-797 |
9.82e-17 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 86.07 E-value: 9.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 558 GYKGKDYSE-AEALIMTFSLNNYPAGDPrLAQAKLWE--EAFLEEMRA--FQRRMAGMFQVTfmaersleDEINRTTAED 632
Cdd:COG1033 149 LYVGRLVSPdGKATLIVVTLDPDPLSSD-LDRKEVVAeiRAIIAKYEDpgVEVYLTGFPVLR--------GDIAEAIQSD 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 633 LPIF-ATSYIVIFLYISLALGSYSSWsrvmvdskatlgLGGVAVVLGAVMAAMGFFSYLGIRSSlVILQVVPFLVLSVGA 711
Cdd:COG1033 220 LAIFfPLALLLILLLLFLFFRSLRGV------------LLPLLVVLLAVIWTLGLMGLLGIPLS-PLTILVPPLLLAIGI 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 712 DNIFIFVLEYQRLpRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAF 791
Cdd:COG1033 287 DYGIHLLNRYREE-RRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLL 365
|
....*.
gi 156231351 792 VALLSL 797
Cdd:COG1033 366 PALLSL 371
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
286-797 |
3.52e-07 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 54.87 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 286 VLIIILCSVFaVVTILLVGFRVAPARDKSKmvdpkkgtslsdklsfSTHTLLGQFFQGWGTWVASWPLTILVLSVIPVVA 365
Cdd:COG1033 354 VLLAFLTSLT-LLPALLSLLPRPKPKTRRL----------------KKPPELGRLLAKLARFVLRRPKVILVVALVLAVV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 366 LAAGLVFTELTTDPVElWSAPNSQARSEKAFHDQHFG---PFFrtnqVILTAPNRSSYRYDSLLlgpknfsgildldlll 442
Cdd:COG1033 417 SLYGISRLKVEYDFED-YLPEDSPIRQDLDFIEENFGgsdPLE----VVVDTGEPDGLKDPEVL---------------- 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 443 ellelqERLRHLQVW---SPEAQRNISLQDIcyapLNPDNTSLYDccinsllqyfqNNRTLLLLTANQTLMGQtsqvdwk 519
Cdd:COG1033 476 ------KEIDRLQDYlesLPEVGKVLSLADL----VKELNQALNE-----------GDPKYYALPESRELLAQ------- 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 520 dhflycanapltfkdgtalalscmADYGAPVFPFLAIGGYKGKDYSEAealIMTFSLNNypagdprLAQAKLweEAFLEE 599
Cdd:COG1033 528 ------------------------LLLLLSSPPGDDLSRFVDEDYSAA---RVTVRLKD-------LDSEEI--KALVEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 600 MRAFQRRMAGMFQVTFMA--ERSLEDEINRTTAEDLP-IFATSYIVIFLYISLALGSYSswsrvmvdskatLGLGGVAVV 676
Cdd:COG1033 572 VRAFLAENFPPDGVEVTLtgSAVLFAAINESVIESQIrSLLLALLLIFLLLLLAFRSLR------------LGLISLIPN 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 677 LGAVMAAMGFFSYLGIRsslviLQVVPFLVLSV----GADNiFIFVLEYQRLPRRPGEPREVHIGRALGRVAPSMLLCSL 752
Cdd:COG1033 640 LLPILLTFGLMGLLGIP-----LNIATAVVASIalgiGVDY-TIHFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSL 713
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 156231351 753 SEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSL 797
Cdd:COG1033 714 TLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLL 758
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
613-818 |
6.51e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 54.07 E-value: 6.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 613 VTFMAERSLEDEINRTTAedlpifatsyIVIFLYISLALGSYSSWSRvmvdskatlGLGGVAVVLGAVMAAMGFFSYLGI 692
Cdd:TIGR00921 183 INYDIEREFGKDMGTTMA----------ISGILVVLVLLLDFKRWWR---------PLLPLVIILFGVAWVLGIMGWLGI 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 693 RSSLVILQVVPfLVLSVGADNIFIFVLEYQRlprrpgeprEVHIGRALG--------RVAPSMLLCSLSEAICFFLGALT 764
Cdd:TIGR00921 244 PLYATTLLAVP-MLIGVGIDYGIQTLNRYEE---------ERDIGRAKGeaivtavrRTGRAVLIALLTTSAGFAALALS 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 156231351 765 PMPAVRTFALTSGLAVILDFLLQMSAFVALL-SLDSKRQEASRLDVCCCVKPQEL 818
Cdd:TIGR00921 314 EFPMVSEFGLGLVAGLITAYLLTLLVLPALLqSIDIGREKVKKEIIAIGGKSSEI 368
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
666-801 |
2.22e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 51.52 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 666 ATLGLGGVAVVLGAVMAAMGFFSY---LGIRSSLVILQVVpfLVLSVGAD-NIFIfVLEYQRlPRRPGEPREVHIGRALG 741
Cdd:pfam03176 169 ALLPLLTVGLSLGAAQGLVAILAHilgIGLSTFALNLLVV--LLIAVGTDyALFL-VSRYRE-ELRAGEDREEAVIRAVR 244
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 742 RVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKR 801
Cdd:pfam03176 245 GTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLALLGRW 304
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
639-786 |
1.20e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 49.85 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 639 SYIVIFLYISLALGSyssWSRVmvdskatlgLGGVAVVLGAVMAAMGFFSYLGIRSSLVILqVVPFLVLSVGAD-NIFIf 717
Cdd:COG4258 648 ALLLILLLLLLRLRS---LRRA---------LRVLLPPLLAVLLTLAILGLLGIPLNLFHL-IALLLVLGIGIDyALFF- 713
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156231351 718 vleyQRLPRRPGEPRevhigralgRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLL 786
Cdd:COG4258 714 ----TEGLLDKGELA---------RTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLL 769
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
665-797 |
6.22e-05 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 47.52 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 665 KATLGLGGVAVVLGAVMAAMGFfsyLGIRSSLvILQVVPFLVLSVGADnIFIFVLEYQRLPRRPGEPREVhIGRALGRVA 744
Cdd:TIGR00921 593 KAVFPLIAIGSGILWAIGLMGL---RGIPSFL-AMATTISIILGLGMD-YSIHLAERYFEERKEHGPKEA-ITHTMERTG 666
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 156231351 745 PSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSL 797
Cdd:TIGR00921 667 PGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
1150-1265 |
6.54e-04 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 44.08 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1150 TFAVSCLLLGL---DLRSGLLNLLSIVMILVDTVGFMALWGISYNAVS--LINLVSAVGMS--VEFVSHITRSFAISTKP 1222
Cdd:COG1033 227 ALLLILLLLFLffrSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTilVPPLLLAIGIDygIHLLNRYREERRKGLDK 306
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 156231351 1223 TwlERAKEATISMGSAVFAgVAMTNLPGILVLGLAKAQLIQIF 1265
Cdd:COG1033 307 R--EALREALRKLGPPVLL-TSLTTAIGFLSLLFSDIPPIRDF 346
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
1156-1266 |
7.32e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 44.06 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 1156 LLLGLDLRS---GLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSF------------AIST 1220
Cdd:TIGR00921 208 LVLLLDFKRwwrPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYeeerdigrakgeAIVT 287
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 156231351 1221 KPTWLERAKEATISMGSAVFAGVAMTNLPGI------LVLGLAKAQLIQIFF 1266
Cdd:TIGR00921 288 AVRRTGRAVLIALLTTSAGFAALALSEFPMVsefglgLVAGLITAYLLTLLV 339
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
288-415 |
1.61e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 42.83 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156231351 288 IIILCSVFAVVTIL-----LVGFRV-APARDKSKMVDPKKGTslsdklsfsthtllgqFFQGWGTWVASWPLTILVLSVI 361
Cdd:COG2409 306 IGVAVAVLAALTLLpallaLLGRRVfWPRRPRRRRAAAPESG----------------FWRRLARAVVRRPVPVLVAAVA 369
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 156231351 362 PVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFhDQHFGPFFrTNQVILTAP 415
Cdd:COG2409 370 VLLALALPALGLRLGLPDADSLPADSPSRQGYDAL-AEHFPPGS-NGPLTVVVE 421
|
|
|